Psyllid ID: psy4165
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 242 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NVR9 | 594 | ATPase family AAA domain- | yes | N/A | 0.876 | 0.356 | 0.754 | 2e-98 | |
| Q58E76 | 593 | ATPase family AAA domain- | N/A | N/A | 0.876 | 0.357 | 0.754 | 3e-98 | |
| Q6PAX2 | 593 | ATPase family AAA domain- | N/A | N/A | 0.876 | 0.357 | 0.754 | 1e-97 | |
| A7YWC4 | 586 | ATPase family AAA domain- | yes | N/A | 0.876 | 0.361 | 0.731 | 1e-94 | |
| Q925I1 | 591 | ATPase family AAA domain- | yes | N/A | 0.876 | 0.358 | 0.726 | 5e-94 | |
| Q3KRE0 | 591 | ATPase family AAA domain- | yes | N/A | 0.938 | 0.384 | 0.685 | 8e-94 | |
| Q9NVI7 | 634 | ATPase family AAA domain- | no | N/A | 0.876 | 0.334 | 0.712 | 4e-93 | |
| Q5T9A4 | 648 | ATPase family AAA domain- | no | N/A | 0.876 | 0.327 | 0.683 | 2e-86 | |
| Q5T2N8 | 411 | ATPase family AAA domain- | no | N/A | 0.909 | 0.535 | 0.651 | 1e-84 | |
| Q20748 | 595 | ATPase family AAA domain- | yes | N/A | 0.876 | 0.356 | 0.612 | 6e-78 |
| >sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 358 bits (918), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 189/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS +A +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSDLAQLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+L EAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILNEAMIDARVADAIRQHQQKMEW 567
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 191/212 (90%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS+++ +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSELSKLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+LTEAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILTEAMIDARVADAIRQHQQKMAW 567
|
Xenopus laevis (taxid: 8355) |
| >sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis GN=atad3-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 190/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HS MDYAIMTGGDVAPMG GVTA+HKVFDWA +S++GL+LF+DEADAFLRK
Sbjct: 356 LFAKKLAMHSSMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS+E ISE LRATLNAFLYRTGEQS+KFMLVLASN P+QFDWA+NDR+DE+V F LP L
Sbjct: 416 RSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDK+VLQPA++GK+RLKVA FDY CS++A +TEG+SGREI+KLGVAWQA
Sbjct: 476 ERERLVRLYFDKYVLQPASEGKQRLKVAQFDYGKKCSELATLTEGMSGREISKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDG+LTEAM+ ++V D+IR H+ K+ W
Sbjct: 536 AAYASEDGILTEAMIDARVADAIRQHQQKMEW 567
|
Xenopus laevis (taxid: 8355) |
| >sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus GN=ATAD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 155/212 (73%), Positives = 188/212 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGKKCSEIAQLTEGMSGREISQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
AYASEDGVLTEAM+ ++V+D+I+ H+ K++W
Sbjct: 539 MAYASEDGVLTEAMMDARVQDAIQQHRQKMQW 570
|
Bos taurus (taxid: 9913) |
| >sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus GN=Atad3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 154/212 (72%), Positives = 188/212 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +TEG+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQW 570
|
Mus musculus (taxid: 10090) |
| >sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus GN=Atad3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 159/232 (68%), Positives = 197/232 (84%), Gaps = 5/232 (2%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S+KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +T G+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTAGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPSH 232
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W + E P+S + S P H
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQW-LKVERPDS----EASKPPH 585
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 151/212 (71%), Positives = 189/212 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 408 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 467
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFMLVLASN P+QFDWA+NDR++EMV F LP
Sbjct: 468 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQE 527
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 528 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 587
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYASEDGVLTEAM+ ++V+D+++ H+ K+ W
Sbjct: 588 TAYASEDGVLTEAMMDTRVQDAVQQHQQKMCW 619
|
Homo sapiens (taxid: 9606) |
| >sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens GN=ATAD3B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 182/212 (85%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 360 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRK 419
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E IS+ LRATLNAFLY G+ S+KFMLVLASN P+QFD A+N R+D MV F LP
Sbjct: 420 RATEEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQE 479
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRL+FD VL+PA +GKRRLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 480 ERERLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 539
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
+AYAS+DGVLTEAM+ + V+D+++ ++ K+RW
Sbjct: 540 TAYASKDGVLTEAMMDACVQDAVQQYRQKMRW 571
|
Homo sapiens (taxid: 9606) |
| >sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens GN=ATAD3C PE=2 SV=2 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 144/221 (65%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 185 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 244
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFML+LAS P+QFDWA+N +D MV F LP
Sbjct: 245 RATEKISEDLRATLNAFLYRTGQHSNKFMLILASCHPEQFDWAINACIDVMVHFDLPGQE 304
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ER RLVR+Y +++VL+PA +GKRRLK+A FDY C +IA +TEG+S R+IA+L V+WQA
Sbjct: 305 ERARLVRMYLNEYVLKPATEGKRRLKLAQFDYGRKCLEIARLTEGMSCRKIAQLAVSWQA 364
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW-QSEQESPE 220
+AYAS+DGVLTEAM+ + V+D ++ H+ +RW + E+ PE
Sbjct: 365 TAYASKDGVLTEAMMDACVQDFVQQHQQMMRWLKGERPGPE 405
|
Homo sapiens (taxid: 9606) |
| >sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis elegans GN=atad-3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 131/214 (61%), Positives = 169/214 (78%), Gaps = 2/214 (0%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAK LA HSG+DYA++TGGD+AP+G GV+AIHKVFDWAS SRKGL++FIDEADAFL+K
Sbjct: 357 LFAKSLAQHSGLDYAVLTGGDIAPLGRDGVSAIHKVFDWASKSRKGLIVFIDEADAFLQK 416
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RS +SE RA LNAFL+RTGEQS KFMLV+ASN P+QFDWAVNDR D++VEF LP +
Sbjct: 417 RSKNGMSEDTRAALNAFLFRTGEQSRKFMLVVASNQPEQFDWAVNDRFDQLVEFTLPGME 476
Query: 121 ERERLVRLYFDKFVLQPAAQGKR--RLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAW 178
ERER++ YF++ ++ PA G R RLK+ FD+ + C+++A T G+SGRE++KL + W
Sbjct: 477 ERERILLQYFNEHIVTPATSGSRSQRLKLDNFDWVAKCNEVAKKTSGMSGRELSKLVIGW 536
Query: 179 QASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW 212
QASAYASE GVLTEA+V D++ H+ K+ W
Sbjct: 537 QASAYASETGVLTEAIVDRNTADAMVQHEHKMEW 570
|
Essential for mitochondrial network organization, mitochondrial metabolism and cell growth at organism and cellular level. Important during development for the up-regulation of mitochondrial activity during the transition to higher larval stages. May play an important in mitochondrial protein synthesis. May also participate in mitochondrial DNA replication. May bind to mitochondrial DNA D-loops and contribute to nucleoid stability. Caenorhabditis elegans (taxid: 6239) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 242 | ||||||
| 242009116 | 615 | conserved hypothetical protein [Pediculu | 0.909 | 0.357 | 0.809 | 1e-104 | |
| 91083895 | 619 | PREDICTED: similar to ATPase family AAA | 0.913 | 0.357 | 0.782 | 1e-103 | |
| 307183935 | 613 | ATPase family AAA domain-containing prot | 0.913 | 0.360 | 0.800 | 1e-103 | |
| 350418804 | 610 | PREDICTED: ATPase family AAA domain-cont | 0.913 | 0.362 | 0.782 | 1e-103 | |
| 340723214 | 610 | PREDICTED: ATPase family AAA domain-cont | 0.913 | 0.362 | 0.778 | 1e-102 | |
| 321464194 | 606 | hypothetical protein DAPPUDRAFT_306868 [ | 0.896 | 0.358 | 0.788 | 1e-102 | |
| 322799184 | 540 | hypothetical protein SINV_05400 [Solenop | 0.913 | 0.409 | 0.787 | 1e-102 | |
| 332025393 | 614 | ATPase family AAA domain-containing prot | 0.913 | 0.359 | 0.791 | 1e-102 | |
| 383849798 | 614 | PREDICTED: ATPase family AAA domain-cont | 0.913 | 0.359 | 0.787 | 1e-102 | |
| 380014524 | 608 | PREDICTED: LOW QUALITY PROTEIN: ATPase f | 0.913 | 0.363 | 0.769 | 1e-101 |
| >gi|242009116|ref|XP_002425338.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509123|gb|EEB12600.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/220 (80%), Positives = 198/220 (90%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGDVAPMG GVTAIHKVFDWA++SR+GL+LF+DEADAFLRK
Sbjct: 356 MFAKKLALHSGMDYAILTGGDVAPMGRDGVTAIHKVFDWATTSRRGLLLFVDEADAFLRK 415
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSETISE LRA LNAFLYRTGEQS+KFMLVLASNTP+QFDWAVNDRLDEMVEF LP L
Sbjct: 416 RSSETISEDLRAALNAFLYRTGEQSNKFMLVLASNTPEQFDWAVNDRLDEMVEFTLPGLE 475
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVL+PA +G +RLKV FDY++LCSK+A +TEG+SGREIAKLGVAWQA
Sbjct: 476 ERERLVRLYFDKFVLEPALEGAKRLKVGQFDYSALCSKMAEMTEGMSGREIAKLGVAWQA 535
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPE 220
+AYAS DGVLTE MVM +V D+IR HK KV WQSEQE +
Sbjct: 536 AAYASSDGVLTEKMVMDRVYDAIRQHKQKVDWQSEQEKTD 575
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91083895|ref|XP_974479.1| PREDICTED: similar to ATPase family AAA domain-containing protein 3 [Tribolium castaneum] gi|270007948|gb|EFA04396.1| hypothetical protein TcasGA2_TC014695 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/221 (78%), Positives = 197/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAK+LA HSGMDYAI+TGGDVAPMG GVTAIHKVFDWA S+RKGL+LF+DEADAFLRK
Sbjct: 364 MFAKRLAKHSGMDYAILTGGDVAPMGRDGVTAIHKVFDWAHSTRKGLLLFVDEADAFLRK 423
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRATLNAFLYR+GEQS KFMLVLASNTP+QFDWAVNDRLDEMV+F LP L
Sbjct: 424 RSSEHISEDLRATLNAFLYRSGEQSQKFMLVLASNTPEQFDWAVNDRLDEMVQFGLPGLE 483
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERL+RLYFDKFVL+PA +GKRRLKV FDY +LCS++A +T+G+SGREIAKLGVAWQA
Sbjct: 484 ERERLIRLYFDKFVLEPATEGKRRLKVDNFDYGALCSQMARMTKGMSGREIAKLGVAWQA 543
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE MV+ + D+++ H+ KV WQSEQE ES
Sbjct: 544 AAYASEDGVLTEKMVLDRCRDAVKQHRQKVEWQSEQEKKES 584
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307183935|gb|EFN70523.1| ATPase family AAA domain-containing protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/221 (80%), Positives = 197/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA +SRKGL+LFIDEADAFLRK
Sbjct: 360 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWALTSRKGLLLFIDEADAFLRK 419
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFMLVLASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 420 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLVLASNTPEQFDWAVNDRLDEMVEFRLPGRE 479
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLKVA FDY+SLCSK+A +TEG+SGRE+AKLGV WQA
Sbjct: 480 ERERLVRLYFDKFVLQPAIEGNKRLKVAQFDYSSLCSKMADLTEGMSGRELAKLGVTWQA 539
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE MVM + ++I+ HK KV+WQSEQE ES
Sbjct: 540 AAYASEDGVLTEKMVMYRCLEAIKQHKQKVQWQSEQEKQES 580
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418804|ref|XP_003491972.1| PREDICTED: ATPase family AAA domain-containing protein 3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/221 (78%), Positives = 197/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA++SRKGL+LFIDEADAFLRK
Sbjct: 357 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWAATSRKGLLLFIDEADAFLRK 416
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFML+LASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 417 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLILASNTPEQFDWAVNDRLDEMVEFHLPGRA 476
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLKVA FDY +LCSK+A +TEG+SGRE+AKLGV WQA
Sbjct: 477 ERERLVRLYFDKFVLQPAIEGNKRLKVAQFDYNALCSKVAEITEGMSGRELAKLGVTWQA 536
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE MV+ K ++++ HK KV+WQSEQE E+
Sbjct: 537 AAYASEDGVLTEQMVIDKCNEAVKQHKQKVQWQSEQEKQEA 577
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723214|ref|XP_003399989.1| PREDICTED: ATPase family AAA domain-containing protein 3-A-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/221 (77%), Positives = 197/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA++SRKGL+LFIDEADAFLRK
Sbjct: 357 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWAATSRKGLLLFIDEADAFLRK 416
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFML+LASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 417 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLILASNTPEQFDWAVNDRLDEMVEFHLPGRA 476
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLKVA FDY +LCSK+A +TEG+SGRE+AKLGV WQA
Sbjct: 477 ERERLVRLYFDKFVLQPAIEGNKRLKVAQFDYNALCSKVAEITEGMSGRELAKLGVTWQA 536
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASE+GVLTE MV+ K ++++ HK KV+WQSEQE E+
Sbjct: 537 AAYASENGVLTEQMVIDKCNEAVKQHKQKVQWQSEQEKQEA 577
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321464194|gb|EFX75204.1| hypothetical protein DAPPUDRAFT_306868 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/217 (78%), Positives = 196/217 (90%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSG+DYAI+TGGD++P+G GVTAIHKVFDWA+ SR+GL+LF+DEADAFLRK
Sbjct: 364 LFAKKLAKHSGLDYAILTGGDISPLGRDGVTAIHKVFDWANGSRRGLLLFVDEADAFLRK 423
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRATLNAFLYRTGEQS+KFM+VLASNTP+QFDWAVNDRLDEMVEF LP L
Sbjct: 424 RSSEKISEDLRATLNAFLYRTGEQSNKFMMVLASNTPEQFDWAVNDRLDEMVEFMLPGLE 483
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKF+LQPAA+GKRRLKVA FDY +LC+KIA +G+SGREIAKLGVAWQA
Sbjct: 484 ERERLVRLYFDKFILQPAAEGKRRLKVAQFDYGALCTKIASEVKGMSGREIAKLGVAWQA 543
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQE 217
SAYAS DG+LTE MVM KV+D+++ H KV WQSE+E
Sbjct: 544 SAYASSDGILTEKMVMEKVKDAVQQHCQKVEWQSEEE 580
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322799184|gb|EFZ20614.1| hypothetical protein SINV_05400 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/221 (78%), Positives = 197/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVT+IHKVFDWA +SRKGL+LFIDEADAFLRK
Sbjct: 293 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTSIHKVFDWALTSRKGLLLFIDEADAFLRK 352
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFMLVLASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 353 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLVLASNTPEQFDWAVNDRLDEMVEFRLPGRE 412
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLK+A FDY+SLC+K+A +TEG+SGRE+AKLGV WQA
Sbjct: 413 ERERLVRLYFDKFVLQPAIEGNKRLKIAQFDYSSLCTKMADLTEGMSGRELAKLGVTWQA 472
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE MVM + ++I+ HK KV+WQSEQE ES
Sbjct: 473 AAYASEDGVLTEKMVMDRCLEAIKQHKQKVQWQSEQEKQES 513
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332025393|gb|EGI65560.1| ATPase family AAA domain-containing protein 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/221 (79%), Positives = 196/221 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA +SRKGL+LFIDEADAFLRK
Sbjct: 364 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWALTSRKGLLLFIDEADAFLRK 423
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFMLVLASNTP+QFDWAVNDRLDEMVEF P
Sbjct: 424 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLVLASNTPEQFDWAVNDRLDEMVEFRFPGRE 483
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLK+A FDY+SLCSK+A +TEG+SGRE+AKLGV WQA
Sbjct: 484 ERERLVRLYFDKFVLQPAIEGNKRLKIAQFDYSSLCSKMADLTEGMSGRELAKLGVTWQA 543
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE MVM + ++I+ HK KV+WQSEQE ES
Sbjct: 544 AAYASEDGVLTEKMVMDRCLEAIKQHKQKVQWQSEQEKQES 584
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849798|ref|XP_003700523.1| PREDICTED: ATPase family AAA domain-containing protein 3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/221 (78%), Positives = 195/221 (88%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA++SRKGL+LFIDEADAFLRK
Sbjct: 360 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWAATSRKGLLLFIDEADAFLRK 419
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFMLVLASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 420 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLVLASNTPEQFDWAVNDRLDEMVEFRLPGRE 479
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLKVA FDY LCSKIA +TEG+SGRE+AKL V WQA
Sbjct: 480 ERERLVRLYFDKFVLQPAIEGNKRLKVAQFDYGMLCSKIAAMTEGMSGRELAKLAVTWQA 539
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYASEDGVLTE M++ K ++I+ H+ KV+WQSEQE ES
Sbjct: 540 AAYASEDGVLTEQMILDKCTEAIKQHRQKVQWQSEQEKQES 580
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380014524|ref|XP_003691279.1| PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 3-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/221 (76%), Positives = 198/221 (89%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMDYAI+TGGD+AP+G GVTAIHKVFDWA++SRKGL+LFIDEADAFLRK
Sbjct: 357 MFAKKLAEHSGMDYAIVTGGDLAPLGRDGVTAIHKVFDWAATSRKGLLLFIDEADAFLRK 416
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRTGEQS+KFML+LASNTP+QFDWAVNDRLDEMVEF LP
Sbjct: 417 RSSEHISEDLRAMLNAFLYRTGEQSNKFMLILASNTPEQFDWAVNDRLDEMVEFRLPGRE 476
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVRLYFDKFVLQPA +G +RLK+A FDY++LCSKIA +T+G+SGRE+AKLGV WQA
Sbjct: 477 ERERLVRLYFDKFVLQPAIEGNKRLKIAQFDYSALCSKIAEITDGMSGRELAKLGVTWQA 536
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPES 221
+AYAS DG+LTE MV+ K +++++ HK KV+WQSEQE E+
Sbjct: 537 TAYASGDGILTEQMVIDKCKEAVKQHKQKVQWQSEQEKQEA 577
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 242 | ||||||
| UNIPROTKB|A7YWC4 | 586 | ATAD3 "ATPase family AAA domai | 0.904 | 0.373 | 0.713 | 9.1e-84 | |
| UNIPROTKB|E2QZ61 | 591 | ATAD3A "Uncharacterized protei | 0.909 | 0.372 | 0.714 | 1.2e-83 | |
| MGI|MGI:1919214 | 591 | Atad3a "ATPase family, AAA dom | 0.958 | 0.392 | 0.675 | 1.2e-83 | |
| RGD|1305964 | 591 | Atad3a "ATPase family, AAA dom | 0.958 | 0.392 | 0.675 | 1.2e-83 | |
| UNIPROTKB|Q3KRE0 | 591 | Atad3 "ATPase family AAA domai | 0.958 | 0.392 | 0.675 | 1.2e-83 | |
| UNIPROTKB|E1BRY8 | 604 | ATAD3A "Uncharacterized protei | 0.929 | 0.372 | 0.693 | 1.5e-83 | |
| UNIPROTKB|F1RJE4 | 593 | LOC100525876 "Uncharacterized | 0.904 | 0.369 | 0.709 | 6.4e-83 | |
| FB|FBgn0040237 | 604 | bor "belphegor" [Drosophila me | 0.896 | 0.359 | 0.723 | 1e-82 | |
| UNIPROTKB|H0Y2W2 | 572 | ATAD3A "ATPase family AAA doma | 0.938 | 0.396 | 0.683 | 1e-82 | |
| UNIPROTKB|Q9NVI7 | 634 | ATAD3A "ATPase family AAA doma | 0.938 | 0.358 | 0.683 | 1e-82 |
| UNIPROTKB|A7YWC4 ATAD3 "ATPase family AAA domain-containing protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 157/220 (71%), Positives = 192/220 (87%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGKKCSEIAQLTEGMSGREISQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW-QSEQESP 219
AYASEDGVLTEAM+ ++V+D+I+ H+ K++W ++E P
Sbjct: 539 MAYASEDGVLTEAMMDARVQDAIQQHRQKMQWLKAEGSQP 578
|
|
| UNIPROTKB|E2QZ61 ATAD3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 158/221 (71%), Positives = 193/221 (87%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWAVNDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAVNDRIDEMVRFDLPGRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGKKCSEIAQLTEGMSGREISQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW-QSEQESPE 220
AYASEDGVLTEAM+ ++V+D+++ H+ K++W ++E PE
Sbjct: 539 MAYASEDGVLTEAMMDARVQDAMQQHQQKMQWLKAEGTRPE 579
|
|
| MGI|MGI:1919214 Atad3a "ATPase family, AAA domain containing 3A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 160/237 (67%), Positives = 198/237 (83%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +TEG+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPSHNQIQS 237
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W + E P+S + P H + S
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQWL-KVERPDS----QTNKPPHPSLLS 590
|
|
| RGD|1305964 Atad3a "ATPase family, AAA domain containing 3A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 160/237 (67%), Positives = 199/237 (83%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S+KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +T G+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTAGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPSHNQIQS 237
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W + E P+S + S P H + S
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQWL-KVERPDS----EASKPPHPSLLS 590
|
|
| UNIPROTKB|Q3KRE0 Atad3 "ATPase family AAA domain-containing protein 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 160/237 (67%), Positives = 199/237 (83%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S+KFMLVLASN P+QFDWA+NDR+DEMV F LP
Sbjct: 419 RATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLKVA FDY CS++A +T G+SGREIA+L VAWQA
Sbjct: 479 ERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTAGMSGREIAQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPSHNQIQS 237
AY+SEDGVLTEAM+ ++V+D+++ H+ K++W + E P+S + S P H + S
Sbjct: 539 MAYSSEDGVLTEAMMDARVQDAVQQHQQKMQWL-KVERPDS----EASKPPHPSLLS 590
|
|
| UNIPROTKB|E1BRY8 ATAD3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 156/225 (69%), Positives = 193/225 (85%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTAIHK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 367 LFAKKLAVHSGMDYAIMTGGDVAPMGREGVTAIHKLFDWANTSRRGLLLFVDEADAFLRK 426
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFL+RTG+ S+KFMLVLASN P+QFDWA+NDR+DEMV F LP L
Sbjct: 427 RATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVNFDLPQLE 486
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFD+ VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 487 ERERLVRMYFDRHVLKPATEGKQRLKLAQFDYGKKCSEIARLTEGMSGREISQLAVAWQA 546
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGV 225
+AYASEDGVLTEAM+ ++V D+++ H+ K+ W + + S GV
Sbjct: 547 AAYASEDGVLTEAMIDARVADAVQQHRQKMEWLKAEGAEASKEGV 591
|
|
| UNIPROTKB|F1RJE4 LOC100525876 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 156/220 (70%), Positives = 191/220 (86%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HKVFDWAS+SR+GL+LF+DEADAFLRK
Sbjct: 359 LFAKKLALHSGMDYAIMTGGDVAPMGRDGVTAVHKVFDWASTSRRGLLLFVDEADAFLRK 418
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRA LNAFL+RTG+ S KFMLVLASN P+QFDWA+NDR+DE+V F LP
Sbjct: 419 RATEKISEGLRAPLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEIVSFDLPRRE 478
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK VL+PA +GK+RLK+A FDY CS+IA +TEG+SGREI++L VAWQA
Sbjct: 479 ERERLVRMYFDKHVLKPATEGKQRLKLAQFDYGKKCSEIAELTEGMSGREISQLAVAWQA 538
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRW-QSEQESP 219
AYASEDGVLTEAM+ ++V+D+I+ H+ K++W ++E SP
Sbjct: 539 MAYASEDGVLTEAMMDARVQDAIQQHRQKMQWLKAEAASP 578
|
|
| FB|FBgn0040237 bor "belphegor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 157/217 (72%), Positives = 184/217 (84%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
MFAKKLA HSGMD+AIMTGGDVAPMG GVTAIHKVFDW+ +SR+GL+LF+DEADAFLRK
Sbjct: 366 MFAKKLAEHSGMDFAIMTGGDVAPMGKEGVTAIHKVFDWSHTSRRGLLLFVDEADAFLRK 425
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
RSSE ISE LRA LNAFLYRT EQ+ KFMLVLASNTP+QFD+A+NDRLDEMVEF LP L
Sbjct: 426 RSSEKISEDLRAALNAFLYRTSEQNPKFMLVLASNTPEQFDYAINDRLDEMVEFTLPGLE 485
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERL+RLYFDK+VLQPAA G +R K+ FDY CSK+A + EG+SGREI+KLGV+WQA
Sbjct: 486 ERERLLRLYFDKYVLQPAAAGAKRFKLDTFDYGKTCSKMAALCEGMSGREISKLGVSWQA 545
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQE 217
+ YASEDG+LTE MV+ + + + HK K+ W S+QE
Sbjct: 546 AVYASEDGLLTEKMVLDRCYSAAQQHKQKMAWLSDQE 582
|
|
| UNIPROTKB|H0Y2W2 ATAD3A "ATPase family AAA domain-containing protein 3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 158/231 (68%), Positives = 198/231 (85%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 346 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 405
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFMLVLASN P+QFDWA+NDR++EMV F LP
Sbjct: 406 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQE 465
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 466 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 525
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231
+AYASEDGVLTEAM+ ++V+D+++ H+ K+ W + E P G D+ SPS
Sbjct: 526 TAYASEDGVLTEAMMDTRVQDAVQQHQQKMCWL-KAEGPGR--G-DEPSPS 572
|
|
| UNIPROTKB|Q9NVI7 ATAD3A "ATPase family AAA domain-containing protein 3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 158/231 (68%), Positives = 198/231 (85%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+FAKKLA HSGMDYAIMTGGDVAPMG GVTA+HK+FDWA++SR+GL+LF+DEADAFLRK
Sbjct: 408 LFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRK 467
Query: 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLN 120
R++E ISE LRATLNAFLYRTG+ S+KFMLVLASN P+QFDWA+NDR++EMV F LP
Sbjct: 468 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQE 527
Query: 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQA 180
ERERLVR+YFDK+VL+PA +GK+RLK+A FDY CS++A +TEG+SGREIA+L V+WQA
Sbjct: 528 ERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQA 587
Query: 181 SAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231
+AYASEDGVLTEAM+ ++V+D+++ H+ K+ W + E P G D+ SPS
Sbjct: 588 TAYASEDGVLTEAMMDTRVQDAVQQHQQKMCWL-KAEGPGR--G-DEPSPS 634
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q20748 | ATAD3_CAEEL | No assigned EC number | 0.6121 | 0.8760 | 0.3563 | yes | N/A |
| A7YWC4 | ATAD3_BOVIN | No assigned EC number | 0.7311 | 0.8760 | 0.3617 | yes | N/A |
| Q3KRE0 | ATAD3_RAT | No assigned EC number | 0.6853 | 0.9380 | 0.3840 | yes | N/A |
| Q6NVR9 | ATAD3_XENTR | No assigned EC number | 0.7547 | 0.8760 | 0.3569 | yes | N/A |
| Q925I1 | ATAD3_MOUSE | No assigned EC number | 0.7264 | 0.8760 | 0.3587 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 242 | |||
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 4e-16 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 8e-13 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 3e-11 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 5e-06 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 2e-05 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 3e-05 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 0.001 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 0.003 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.003 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-16
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTA--IHKVFDWASSSRKGLVLFIDEADAFL 58
AK +A G + ++G ++ G + + ++F+ A V+FIDE DA
Sbjct: 13 TLAKAVAKELGAPFIEISGSELVSK-YVGESEKRLRELFEAAKKLAPC-VIFIDEIDALA 70
Query: 59 RKRSSETISESLRATLNAFLYRT-GEQSD--KFMLVLASNTPQQFDWAV-NDRLDEMVEF 114
R S SES R +N L G S K +++ A+N P + D A+ R D ++EF
Sbjct: 71 GSRGSGGDSESRR-VVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEF 129
Query: 115 PL 116
PL
Sbjct: 130 PL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-13
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A S + + G ++ G S I ++F+ A ++FIDE D+
Sbjct: 291 LLAKAVALESRSRFISVKGSELLSKWVGESE-KNIRELFEKARKL-APSIIFIDEIDSLA 348
Query: 59 RKRSSETISESLRATLNAFLY-RTG-EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEF 114
R R + L G E+++ +++ A+N P D A+ R D ++
Sbjct: 349 SGRGPSEDGSGRRV-VGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
PLP L ER + +++ R K P ++A +TEG SG +IA L
Sbjct: 408 PLPDLEERLEIFKIHL-------------RDKKPPLAEDVDLEELAEITEGYSGADIAAL 454
Query: 175 G 175
Sbjct: 455 V 455
|
Length = 494 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFML 90
IH++++ A + ++FIDE DA R + + + +NA L ++++ +
Sbjct: 199 IHELYERARKAAP-CIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257
Query: 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150
+ A+N P+ D A+ R +E +EF LP ER ++ Y KF L + A
Sbjct: 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--------VD-ADL 308
Query: 151 DYTSLCSKIAHVTEGLSGREI 171
Y +A T+G+SGR+I
Sbjct: 309 RY------LAAKTKGMSGRDI 323
|
Length = 368 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 35/213 (16%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +AH + + + G + V G + ++F+ A + ++FIDE DA
Sbjct: 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAA 229
Query: 60 KRSSETISE---------SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV--NDRL 108
KR+ S L A L+ F + ++ A+N P D A+ R
Sbjct: 230 KRTDSGTSGDREVQRTLMQLLAELDGF-----DPRGNVKVIAATNRPDILDPALLRPGRF 284
Query: 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSLCSKIAHVTEGLS 167
D ++E PLP R +++++ R++K+A D IA +TEG S
Sbjct: 285 DRIIEVPLPDFEGRLEILKIH------------TRKMKLAEDVDL----EAIAKMTEGAS 328
Query: 168 GREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200
G ++ + A E +T + VE
Sbjct: 329 GADLKAICTEAGMFAIREERDYVTMDDFIKAVE 361
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 48 VLFIDEADAFLRKRSSETISES---------LRATLNAFLYRTGEQSDKFMLVLASNTPQ 98
++FIDE DA KR S L L+ F + +++A+N P
Sbjct: 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF-----DPRGNVKVIMATNRPD 301
Query: 99 QFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSL 155
D A+ R D +EFPLP R +++++ R++ +A D
Sbjct: 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH------------TRKMNLADDVDL--- 346
Query: 156 CSKIAHVTEGLSGREIA 172
+A +TEG SG ++
Sbjct: 347 -ELLARLTEGFSGADLK 362
|
Length = 406 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 3e-05
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A + + + ++G D M G + + +F+ A + ++FIDE DA R
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGR 258
Query: 60 KRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
LP + RE++++++ RR+ P + IA T G SG ++A
Sbjct: 319 VGLPDVRGREQILKVHM------------RRV---PLAPDIDAAIIARGTPGFSGADLAN 363
Query: 174 LGVAWQASAYASEDGVLTEAMV-MSKVEDSI 203
L +A+ +A+ +MV K +D I
Sbjct: 364 L--VNEAALFAARGNKRVVSMVEFEKAKDKI 392
|
Length = 644 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
M AK +AHH+ + + G + V G + VF A + ++ FIDE D+
Sbjct: 194 MLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSII-FIDEVDSIAT 252
Query: 60 KR-SSETIS--ESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR ++T + E R L G +Q+ +++A+N D A+ RLD +E
Sbjct: 253 KRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 312
Query: 114 FPLPTLNERERLVRLYF 130
FPLP + R++ RL F
Sbjct: 313 FPLP--DRRQK--RLIF 325
|
Length = 398 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 44 RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP--QQFD 101
K VLFIDE D+ S +L L + ++ A+N P D
Sbjct: 83 AKPGVLFIDEIDSL-----SRGAQNALLRVLETLND-LRIDRENVRVIGATNRPLLGDLD 136
Query: 102 WAVNDRLDEMVEFPL 116
A+ DRLD + PL
Sbjct: 137 RALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.0 bits (85), Expect = 0.003
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 12 MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71
+D ++ SG + A + VL +DE + L +
Sbjct: 46 LDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-VLILDEITSLLDAEQEALLLLLEE 104
Query: 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA-VNDRLDEMVEFPLPT 118
L L ++L +N + A + R D + L
Sbjct: 105 LRLLLLLKSEK----NLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 242 | |||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0734|consensus | 752 | 100.0 | ||
| KOG0730|consensus | 693 | 100.0 | ||
| KOG0738|consensus | 491 | 100.0 | ||
| KOG0733|consensus | 802 | 100.0 | ||
| KOG0733|consensus | 802 | 100.0 | ||
| KOG0731|consensus | 774 | 100.0 | ||
| KOG0736|consensus | 953 | 100.0 | ||
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| KOG0739|consensus | 439 | 100.0 | ||
| KOG0728|consensus | 404 | 100.0 | ||
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0737|consensus | 386 | 100.0 | ||
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0652|consensus | 424 | 99.98 | ||
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.98 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.97 | |
| KOG0735|consensus | 952 | 99.97 | ||
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.97 | |
| KOG0740|consensus | 428 | 99.97 | ||
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.97 | |
| KOG0726|consensus | 440 | 99.97 | ||
| KOG0727|consensus | 408 | 99.97 | ||
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.97 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.97 | |
| KOG0729|consensus | 435 | 99.97 | ||
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.97 | |
| KOG0742|consensus | 630 | 99.96 | ||
| KOG0730|consensus | 693 | 99.96 | ||
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.96 | |
| KOG0651|consensus | 388 | 99.95 | ||
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.95 | |
| KOG0741|consensus | 744 | 99.94 | ||
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.93 | |
| KOG0732|consensus | 1080 | 99.91 | ||
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.91 | |
| KOG0736|consensus | 953 | 99.75 | ||
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.75 | |
| KOG0735|consensus | 952 | 99.73 | ||
| KOG0744|consensus | 423 | 99.72 | ||
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.6 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.57 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.56 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.53 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.52 | |
| KOG0743|consensus | 457 | 99.5 | ||
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.48 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.47 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.4 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.38 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.36 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.34 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.33 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.28 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.16 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.16 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.14 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.12 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.12 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.12 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.1 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.09 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.09 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.08 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.08 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.07 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.07 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.06 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.06 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.04 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.03 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.02 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.01 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 98.99 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.99 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 98.98 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 98.98 | |
| KOG2028|consensus | 554 | 98.97 | ||
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 98.96 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 98.96 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 98.95 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 98.95 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 98.95 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 98.91 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 98.9 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 98.89 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 98.89 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 98.89 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 98.89 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 98.89 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 98.88 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 98.88 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.85 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 98.85 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 98.85 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 98.85 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 98.85 | |
| KOG2004|consensus | 906 | 98.85 | ||
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 98.84 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 98.83 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 98.81 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 98.8 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 98.8 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 98.8 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 98.78 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 98.78 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.78 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 98.78 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 98.74 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 98.74 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 98.74 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 98.74 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 98.72 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 98.7 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 98.68 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 98.68 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 98.67 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 98.64 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 98.64 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 98.64 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 98.63 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 98.63 | |
| PRK08727 | 233 | hypothetical protein; Validated | 98.63 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 98.61 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 98.6 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 98.6 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 98.59 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 98.52 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 98.48 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 98.47 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.44 | |
| PRK06620 | 214 | hypothetical protein; Validated | 98.43 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 98.38 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 98.32 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 98.31 | |
| KOG0989|consensus | 346 | 98.3 | ||
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.28 | |
| PRK09087 | 226 | hypothetical protein; Validated | 98.28 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 98.26 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.26 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 98.25 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.23 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 98.21 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 98.2 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.16 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 98.14 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.14 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 98.13 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 98.13 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 98.1 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.07 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 98.07 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 98.05 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 98.05 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 98.01 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 97.98 | |
| PHA02244 | 383 | ATPase-like protein | 97.95 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 97.92 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 97.92 | |
| KOG0741|consensus | 744 | 97.92 | ||
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 97.91 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 97.91 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.91 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 97.89 | |
| KOG1969|consensus | 877 | 97.88 | ||
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.88 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 97.87 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 97.86 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 97.84 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.83 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 97.83 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 97.72 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 97.72 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 97.72 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 97.68 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 97.67 | |
| KOG1514|consensus | 767 | 97.67 | ||
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 97.65 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 97.59 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 97.58 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.52 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.49 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 97.47 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 97.46 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 97.43 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 97.43 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 97.43 | |
| KOG2227|consensus | 529 | 97.41 | ||
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 97.4 | |
| KOG0745|consensus | 564 | 97.4 | ||
| PRK15115 | 444 | response regulator GlrR; Provisional | 97.36 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 97.33 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 97.32 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.32 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 97.29 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.27 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 97.25 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 97.24 | |
| KOG2035|consensus | 351 | 97.21 | ||
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 97.19 | |
| KOG1942|consensus | 456 | 97.18 | ||
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 97.14 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 97.14 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 97.13 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 97.12 | |
| KOG2680|consensus | 454 | 97.08 | ||
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 97.01 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.0 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 96.99 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 96.96 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 96.95 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 96.9 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 96.8 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 96.77 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 96.74 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 96.74 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 96.7 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 96.63 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 96.52 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 96.48 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 96.48 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 96.46 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 96.41 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 96.39 | |
| KOG1051|consensus | 898 | 96.21 | ||
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 96.19 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 96.17 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 96.12 | |
| KOG2228|consensus | 408 | 96.12 | ||
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 95.9 | |
| PRK08116 | 268 | hypothetical protein; Validated | 95.88 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 95.68 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 95.5 | |
| PF13173 | 128 | AAA_14: AAA domain | 95.48 | |
| PF05729 | 166 | NACHT: NACHT domain | 95.39 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 95.02 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 94.89 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 94.87 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 94.76 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 94.71 | |
| KOG0990|consensus | 360 | 94.63 | ||
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 94.51 | |
| KOG1968|consensus | 871 | 93.96 | ||
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 93.81 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 93.65 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 93.09 | |
| KOG0478|consensus | 804 | 93.07 | ||
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 93.02 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 93.01 | |
| PRK08181 | 269 | transposase; Validated | 92.96 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 92.52 | |
| PHA00012 | 361 | I assembly protein | 92.43 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.91 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 91.63 | |
| KOG0991|consensus | 333 | 91.45 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 91.11 | |
| PRK06526 | 254 | transposase; Provisional | 91.06 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 90.98 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 90.87 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 90.64 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 90.46 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 89.89 | |
| PF05872 | 502 | DUF853: Bacterial protein of unknown function (DUF | 89.27 | |
| KOG1051|consensus | 898 | 88.96 | ||
| KOG0481|consensus | 729 | 88.63 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 88.5 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.19 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 87.25 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 86.86 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 86.57 | |
| PRK13853 | 789 | type IV secretion system protein VirB4; Provisiona | 86.0 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 85.95 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 85.06 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 84.45 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 83.76 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 82.08 | |
| KOG0479|consensus | 818 | 81.64 | ||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 81.55 | |
| KOG0482|consensus | 721 | 80.57 |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=298.65 Aligned_cols=191 Identities=23% Similarity=0.386 Sum_probs=173.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||||+|+++++.|+.|.+|.|..|| |++.+.++++|..|+..+ ||||||||||+++.+|.+.+. ..+.++.+-+|
T Consensus 200 LLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 200 LLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred HHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 999999999999999977653 34578999999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ...++|-||+|||+++-|||||+ ||||++|+||+||.+.|.+||+.|.+++.+. +++||
T Consensus 279 L~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-----------~dvd~- 346 (406)
T COG1222 279 LNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-----------DDVDL- 346 (406)
T ss_pred HHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-----------cCcCH-
Confidence 99998 55678999999999999999999 9999999999999999999999999875443 34777
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
+.||+.|+|+|||||+++|.+|-..+...++..+|++||++|.+++.....
T Consensus 347 ---e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 347 ---ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred ---HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 999999999999999999997766677777889999999999999986543
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=306.34 Aligned_cols=209 Identities=26% Similarity=0.369 Sum_probs=188.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|+|.|+|||+.+++++-.++ |.+.++++.+|..|++.+ ||||||||||+++++|...+.+ ..++.+|+||.
T Consensus 352 lLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLv 429 (752)
T KOG0734|consen 352 LLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLV 429 (752)
T ss_pred HHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHH
Confidence 69999999999999999999999876 999999999999999998 9999999999999999887755 78999999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| ..+.+|+|||+||.|+.||+||. ||||++|.+|.||...|.+||+.|+.++.+. +++|.
T Consensus 430 EmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-----------~~VD~--- 495 (752)
T KOG0734|consen 430 EMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-----------EDVDP--- 495 (752)
T ss_pred HhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-----------cCCCH---
Confidence 998 56778999999999999999999 8999999999999999999999999975443 35676
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC--CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCC
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDG--VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKS 228 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (242)
.-||+-|.||+||||.|+|+ +|+..+..++ .+++.+++.|-.+++.+..++....+.+.....+||+.|+
T Consensus 496 -~iiARGT~GFsGAdLaNlVN--qAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GH 567 (752)
T KOG0734|consen 496 -KIIARGTPGFSGADLANLVN--QAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGH 567 (752)
T ss_pred -hHhccCCCCCchHHHHHHHH--HHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCc
Confidence 89999999999999999999 6777666665 8999999999999999988887788877777777776654
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=300.82 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=165.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|+|||+|++++++|+.++++++.++| |++|+.++++|++|+..+ ||||||||||++++.|+++. ++...+++++||+
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLt 560 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLT 560 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCc-cchHHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999998 99999999999999998544 4778899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| +...+|+|||+||||+.||+|++ ||||+.|+||+||.+.|++||+.+++++++. +++|+
T Consensus 561 EmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-----------~~vdl--- 626 (693)
T KOG0730|consen 561 EMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-----------EDVDL--- 626 (693)
T ss_pred HcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-----------ccccH---
Confidence 997 45568999999999999999999 7999999999999999999999999986554 23566
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC----CCccHHHHHHHHHHHHHh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASED----GVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~----~~~~~~~~~~a~~~~~~~ 205 (242)
.+||+.|+|||||||.++|++ |+.++.++ ..++.++|++|+..+...
T Consensus 627 -~~La~~T~g~SGAel~~lCq~--A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 627 -EELAQATEGYSGAEIVAVCQE--AALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -HHHHHHhccCChHHHHHHHHH--HHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 999999999999999999994 44444433 378999999999877544
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=280.67 Aligned_cols=188 Identities=20% Similarity=0.320 Sum_probs=165.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|.|||..||.|+.+.+.+|| |++|+.++-+|+.|+.++ |++|||||||+|+.+|++.+.++..+++.++||.
T Consensus 260 lLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLv 338 (491)
T KOG0738|consen 260 LLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLV 338 (491)
T ss_pred HHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 79999999999999999999999999 999999999999999998 9999999999999999999999999999999999
Q ss_pred Hhcc---CCCC---eEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 80 RTGE---QSDK---FMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 80 ~l~~---~~~~---v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+||. .... |+|+++||.||+||.||++||.+.|+||+|+.+.|..+++..|+...+. +++++
T Consensus 339 QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----------~~~~~- 406 (491)
T KOG0738|consen 339 QMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----------DPVNL- 406 (491)
T ss_pred HhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----------CCccH-
Confidence 9972 2223 8999999999999999999999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh--------------cC---CCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYAS--------------ED---GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~--------------~~---~~~~~~~~~~a~~~~~~ 204 (242)
+.||++++||||+||.++|++|-..+... ++ ..++..+|+.|+.++..
T Consensus 407 ---~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 407 ---EDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred ---HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 99999999999999999999765544431 11 25888899999887753
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=287.45 Aligned_cols=189 Identities=25% Similarity=0.353 Sum_probs=163.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||||+|+|.|++|+.|.+++|++|| ||+|+.++++|..|+.++ ||||||||+|+|++.|+.++ .+...+++|+||+
T Consensus 560 LlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 560 LLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLT 637 (802)
T ss_pred HHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 99999999999999999877 6668899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc-CCCChhH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV-APFDYTS 154 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~-~~~d~~~ 154 (242)
+|| +...+|+|||+||||+-||||++ ||||..+++++|+.++|..||+.+++. .+.++ +++|+
T Consensus 638 ElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----------~k~pl~~dVdl-- 705 (802)
T KOG0733|consen 638 ELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----------TKPPLSSDVDL-- 705 (802)
T ss_pred HhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----------CCCCCCcccCH--
Confidence 998 45668999999999999999999 999999999999999999999999983 12333 34666
Q ss_pred hHHHHHHhCC--CCCHHHHHHHHHHHHHHHhhh--------cC--------CCccHHHHHHHHHHHHHh
Q psy4165 155 LCSKIAHVTE--GLSGREIAKLGVAWQASAYAS--------ED--------GVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 155 ~l~~la~~t~--g~s~adi~~lv~~a~~~~~~~--------~~--------~~~~~~~~~~a~~~~~~~ 205 (242)
+.||..+. |||||||..||++|...++.. .. -.++..+|++|++++...
T Consensus 706 --~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 706 --DEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred --HHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 99999887 999999999999554333321 00 046778999999887543
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=272.26 Aligned_cols=161 Identities=25% Similarity=0.408 Sum_probs=145.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+|||+|+|+||+.++++++.+.+ |++|+.|+++|++|+.++ |||+||||||++.++|...+ .+-.++++.+||+
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt 315 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLT 315 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHH
Confidence 58999999999999999999999976 999999999999999998 99999999999999998854 4446799999999
Q ss_pred Hhcc------CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 80 RTGE------QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 80 ~l~~------~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
.||+ .+.+|+||||||||+.|||+|+ ||||+.|.++.|+..+|.+||+...+++.+.+ ++|
T Consensus 316 ~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----------~~d 384 (802)
T KOG0733|consen 316 SMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----------DFD 384 (802)
T ss_pred hhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----------CcC
Confidence 9972 2457999999999999999999 99999999999999999999999998765442 466
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAW 178 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a 178 (242)
+ ..||+.|+||+||||..||..|
T Consensus 385 ~----~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 385 F----KQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred H----HHHHhcCCCccchhHHHHHHHH
Confidence 6 9999999999999999999833
|
|
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=279.41 Aligned_cols=215 Identities=25% Similarity=0.317 Sum_probs=185.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccC---CCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRS---SETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~---~~~~~~~~~~~l~~ 76 (242)
|||||+|+|.|+||+.++++++...+ |.+..+++.+|..|+.++ ||||||||||+++..|+ ....+.+....+|+
T Consensus 359 LLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 359 LLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred HHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 69999999999999999999999864 777899999999999998 99999999999999995 22345567789999
Q ss_pred HHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 77 FLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 77 lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
||.+|| ..+.+|+|+++||+++-||+|++ ||||+.|.+++|+..+|.+|++.|+++..+ ..+.+|+
T Consensus 438 ll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~----------~~e~~dl 507 (774)
T KOG0731|consen 438 LLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL----------DDEDVDL 507 (774)
T ss_pred HHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC----------CcchhhH
Confidence 999998 44567999999999999999999 999999999999999999999999987433 2234555
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCC
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSP 230 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 230 (242)
..+|.+|+||+|+||.++|++|...+.+.....++..+++.|+++++.+...+......+....++||.+++.+
T Consensus 508 ----~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~ 581 (774)
T KOG0731|consen 508 ----SKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAV 581 (774)
T ss_pred ----HHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchh
Confidence 77999999999999999999666666666677999999999999999887666666666777788888777655
|
|
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=270.38 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=162.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc-hHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS-ESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~-~~~~~~l~~lL 78 (242)
|||||+|.||+..|++|.++++.++| |++|.++|++|++|+..+ ||||||||+|+++|+|+..+++ +.+.+++++||
T Consensus 720 LlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 720 LLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred HHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999887 9999999999999999887654 55889999999
Q ss_pred HHhcc----CCCCeEEEEecCCcccccHHHh--cccccEEEeCCC-CHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 79 YRTGE----QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 79 ~~l~~----~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
.+||. ....|+||||||||+.|||||+ ||||+-++++++ |.+.+..+|+...+++.++ +++|
T Consensus 799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-----------edVd 867 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-----------EDVD 867 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-----------CCcC
Confidence 99972 4457999999999999999999 999999999998 8899999999999875443 2355
Q ss_pred hhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhc-------------CC----CccHHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASE-------------DG----VLTEAMVMSKVEDSI 203 (242)
Q Consensus 152 ~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~-------------~~----~~~~~~~~~a~~~~~ 203 (242)
+ .++|+++ ..|||||+..+|.+|..++..+. .. .++++||.+++++..
T Consensus 868 L----~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 868 L----VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred H----HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 5 9999999 56999999999998766655321 11 688999999887763
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=273.11 Aligned_cols=213 Identities=24% Similarity=0.325 Sum_probs=185.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
|||||+|+|.++||+.++++++..++ |-+...+|.+|.+|++++ ||||||||||+++..|+.+ +.+.+..+.++++
T Consensus 198 LLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQl 276 (596)
T COG0465 198 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 276 (596)
T ss_pred HHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHH
Confidence 69999999999999999999999976 999999999999999998 9999999999999998643 3355567899999
Q ss_pred HHHhccCC--CCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGEQS--DKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~~~--~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+||... .+|++|++||||+-+||||+ ||||+.|.++.||...|++|++.|+++.+++ .++|+
T Consensus 277 LvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-----------~~Vdl- 344 (596)
T COG0465 277 LVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-----------EDVDL- 344 (596)
T ss_pred HhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-----------CcCCH-
Confidence 99998554 67999999999999999999 8999999999999999999999999874433 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCC
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSS 229 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (242)
..+|+.|.||+|+|+.+++++|-..+.......+++.++.+++++++.+..++...+....-...+||.+++.
T Consensus 345 ---~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagha 417 (596)
T COG0465 345 ---KKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHA 417 (596)
T ss_pred ---HHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHH
Confidence 8899999999999999999954444444455599999999999999999887777777788888888866543
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=240.29 Aligned_cols=185 Identities=24% Similarity=0.377 Sum_probs=167.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|+|||+|+++++||+.++.+.+... +|++.+.++++|+.|++.+ |||+||||+|+++-.|.-+.-.+....++|.||+
T Consensus 166 m~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLT 244 (368)
T COG1223 166 MMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLT 244 (368)
T ss_pred HHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH
Confidence 6899999999999999999999975 5999999999999999998 9999999999999998877777788999999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
+|| +.+.+|+.|++||+|+.||+|+++||...|+|.+|+.++|.+|++.|.+++++.- +..+.
T Consensus 245 elDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---------------~~~~~ 309 (368)
T COG1223 245 ELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---------------DADLR 309 (368)
T ss_pred hccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---------------ccCHH
Confidence 998 6677899999999999999999999999999999999999999999999876542 33358
Q ss_pred HHHHhCCCCCHHHHHHHH-HHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 158 KIAHVTEGLSGREIAKLG-VAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv-~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++.+|.||||+||..-+ ..|...+.+.....++.+|++.|+.+
T Consensus 310 ~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 310 YLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 999999999999998655 56777788888889999999999987
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=247.16 Aligned_cols=162 Identities=24% Similarity=0.390 Sum_probs=147.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
||+|+|.|.|-.||.|+.++|+++| |++|+.++++|+.|+++. |+||||||||++++.|+.+. ++..+++..+||.+
T Consensus 182 LAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQ 259 (439)
T KOG0739|consen 182 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQ 259 (439)
T ss_pred HHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHh
Confidence 8999999999999999999999998 999999999999999998 99999999999999887765 77789999999999
Q ss_pred hc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 81 TG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 81 l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
|. +.+.+|+|+|+||-||.||.|+++||++.|++|+|+...|..+|+.++...+ ..+.+-|+ .
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp----------~~LT~~d~----~ 325 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP----------HVLTEQDF----K 325 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCc----------cccchhhH----H
Confidence 94 6677899999999999999999999999999999999999999999997643 23556666 9
Q ss_pred HHHHhCCCCCHHHHHHHHHHHH
Q psy4165 158 KIAHVTEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv~~a~ 179 (242)
+|++.|+||||+||.-+|+++.
T Consensus 326 eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 326 ELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred HHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999988887443
|
|
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=233.74 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=167.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|+|++..|.|+.|+++++..+| |++.+.++++|-.|++++ |+|||+||||+++..|..++ +.++.++.+.+|
T Consensus 196 LlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 196 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred HHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 68999999999999999999999877 999999999999999999 99999999999999886543 356688889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++| +...+|-||++||+.+-|||||+ ||+|++|+||+|+.+.|.+||+.+-+++++. ..+++
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-----------rgi~l- 342 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-----------RGINL- 342 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-----------cccCH-
Confidence 99998 55668999999999999999999 8999999999999999999999999876554 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|+...|.||++++.+|.+|-.-++..++-++|++||+-|+.++...
T Consensus 343 ---~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 343 ---RKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ---HHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999999999999999999955555555666699999999999888754
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=255.32 Aligned_cols=190 Identities=19% Similarity=0.275 Sum_probs=165.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|++||+++|+||+.++++.+.+++ |+++.+++++|..|+..+ ||||||||||.++.++...+.++...+++++||+
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~ 352 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFIT 352 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHH
Confidence 58999999999999999999998866 999999999999999888 9999999999999876655556778899999999
Q ss_pred HhccCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHH
Q psy4165 80 RTGEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCS 157 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~ 157 (242)
+|+....+|+||+|||+++.||++++ ||||..|+|++|+.++|.+||+.|+.+.... ...++|+ +
T Consensus 353 ~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---------~~~~~dl----~ 419 (489)
T CHL00195 353 WLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---------SWKKYDI----K 419 (489)
T ss_pred HHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---------cccccCH----H
Confidence 99877888999999999999999998 6999999999999999999999999874221 1234565 8
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 158 KIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 158 ~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
.+|+.|+||||+||+++|++|...++.. ...++.+++..++......
T Consensus 420 ~La~~T~GfSGAdI~~lv~eA~~~A~~~-~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 420 KLSKLSNKFSGAEIEQSIIEAMYIAFYE-KREFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCC
Confidence 9999999999999999999766555543 3468999999999888653
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=242.18 Aligned_cols=161 Identities=27% Similarity=0.415 Sum_probs=146.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||+|+|++.|++|+.|+.+.+.++| |++++.++.+|..|.+.+ ||||||||+|++++.| ..++++.+..+-++|+.
T Consensus 142 mlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~ 219 (386)
T KOG0737|consen 142 MLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMA 219 (386)
T ss_pred HHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence 69999999999999999999999987 999999999999999998 9999999999999999 55558888899999999
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|| +.+..|+|+||||||.+||.|+++|+.+.++++.|+.++|++||+.+|++-.++ +++|+
T Consensus 220 ~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----------~~vD~--- 285 (386)
T KOG0737|consen 220 LWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----------DDVDL--- 285 (386)
T ss_pred HhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----------cccCH---
Confidence 997 334469999999999999999999999999999999999999999999873332 34666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAW 178 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a 178 (242)
..+|..|+||||+||+++|+.|
T Consensus 286 -~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 286 -DEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred -HHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999999999843
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=239.31 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=164.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++.+..++ |++++.++++|..|+..+ ||||||||+|.++.+|.+.. ......+.+.+|
T Consensus 194 ~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~L 272 (398)
T PTZ00454 194 MLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLEL 272 (398)
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHH
Confidence 58999999999999999999988766 999999999999999887 99999999999998875433 233566788999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ...+++||+|||+++.|||+++ ||||.+|+|++|+.++|..||+.++.++++. .++|+
T Consensus 273 L~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-----------~dvd~- 340 (398)
T PTZ00454 273 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-----------EEVDL- 340 (398)
T ss_pred HHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-----------cccCH-
Confidence 999973 3457999999999999999998 6999999999999999999999999864332 24555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..|+||||+||+++|++|...+.......++.+||.+|++++.....
T Consensus 341 ---~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~ 391 (398)
T PTZ00454 341 ---EDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTD 391 (398)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccc
Confidence 899999999999999999997766666666679999999999999876643
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=248.68 Aligned_cols=187 Identities=23% Similarity=0.336 Sum_probs=163.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
|||+|+|++++.+|+.+..+++.++| |+++++++++|..|+..+ ||||||||+|++++.|+... .+...+++++||+
T Consensus 291 ~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~ 368 (494)
T COG0464 291 LLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLT 368 (494)
T ss_pred HHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCC-chHHHHHHHHHHH
Confidence 68999999999999999999999987 999999999999999888 99999999999999998765 3334789999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|+ +...+|+||+|||+|+.+|+|+++ |||..|+|++||.++|.+||+.++.+... ....++|+
T Consensus 369 ~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~---------~~~~~~~~--- 436 (494)
T COG0464 369 ELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP---------PLAEDVDL--- 436 (494)
T ss_pred HhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC---------cchhhhhH---
Confidence 996 666679999999999999999995 99999999999999999999999985211 11234555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASE-DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-~~~~~~~~~~~a~~~~ 202 (242)
+.+++.|+||||+||..+|++|...+.... ...++.+++..|+...
T Consensus 437 -~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 437 -EELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 999999999999999999997766666655 5689999999999873
|
|
| >KOG0652|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=222.41 Aligned_cols=192 Identities=21% Similarity=0.318 Sum_probs=170.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|+|||.|...+..|+.+-++.+..++ |++.+.++..|..|++.+ |+||||||+|+++.+|.+++. ..+.++.+.+|
T Consensus 220 lmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLEL 298 (424)
T KOG0652|consen 220 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 298 (424)
T ss_pred HHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHH
Confidence 68999999999999999999999977 999999999999999988 999999999999999977653 34577888999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++|. .+..|-||++||+.+-|||||+ ||+|++|+||.|+.+.|.+|++.|-++++.. ++++|
T Consensus 299 LNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-----------~DvNf- 366 (424)
T KOG0652|consen 299 LNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-----------DDVNF- 366 (424)
T ss_pred HHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-----------CCCCH-
Confidence 999984 4557999999999999999999 8999999999999999999999999875443 35666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKM 208 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 208 (242)
++||+.|++|+|++.+.+|.+|-..++......++.++|++++..+......
T Consensus 367 ---eELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka 418 (424)
T KOG0652|consen 367 ---EELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKA 418 (424)
T ss_pred ---HHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999977777777777799999999999888654433
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=253.84 Aligned_cols=188 Identities=20% Similarity=0.326 Sum_probs=161.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|+++|++++++|+.++++++.++| |++++.++++|..|+... ||||||||+|.+++.|+.........+++++||+
T Consensus 502 ~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~ 580 (733)
T TIGR01243 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLT 580 (733)
T ss_pred HHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999888 9999999999999988765545567789999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|+ ....+++||+|||+|+.||++++ ||||..|++|+|+.++|.+||+.++++.++. .++|+
T Consensus 581 ~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-----------~~~~l--- 646 (733)
T TIGR01243 581 EMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-----------EDVDL--- 646 (733)
T ss_pred HhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-----------ccCCH---
Confidence 997 35668999999999999999999 6999999999999999999999998764332 23555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------------cCCCccHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------------EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------------~~~~~~~~~~~~a~~~~~~ 204 (242)
..+|+.|+||||+||.++|+.|...+... ....++.+||.+|+.+...
T Consensus 647 -~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 647 -EELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred -HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 89999999999999999999665444331 0126889999999976643
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=263.17 Aligned_cols=187 Identities=11% Similarity=0.155 Sum_probs=153.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc------------------------------------------chHHH--HHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG------------------------------------------SSGVT--AIHKV 36 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~------------------------------------------g~~e~--~l~~~ 36 (242)
+||||+|+++++||+.++++++.+++ ++++. .++.+
T Consensus 1645 lLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~l 1724 (2281)
T CHL00206 1645 YLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQ 1724 (2281)
T ss_pred HHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHHH
Confidence 58999999999999999999987532 12333 48999
Q ss_pred HHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-----CCCCeEEEEecCCcccccHHHh--cccc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-----QSDKFMLVLASNTPQQFDWAVN--DRLD 109 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-----~~~~v~vI~tTn~~~~ld~al~--~Rfd 109 (242)
|+.|++++ ||||||||||+++.+.. ....+++||++|+. ...+|+||||||+|+.|||||+ ||||
T Consensus 1725 FelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFD 1796 (2281)
T CHL00206 1725 FELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLN 1796 (2281)
T ss_pred HHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCC
Confidence 99999998 99999999999987521 12347888899863 2457999999999999999999 7999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC--CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA--PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~--~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+.|+++.|+..+|++++..++... ++.++ .+|+ +.+|+.|.|||||||.+||++|...+...+.
T Consensus 1797 R~I~Ir~Pd~p~R~kiL~ILl~tk----------g~~L~~~~vdl----~~LA~~T~GfSGADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1797 TCIKIRRLLIPQQRKHFFTLSYTR----------GFHLEKKMFHT----NGFGSITMGSNARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred eEEEeCCCCchhHHHHHHHHHhhc----------CCCCCcccccH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998654321 12222 2455 8999999999999999999987777777888
Q ss_pred CCccHHHHHHHHHHHHHhhhhh
Q psy4165 188 GVLTEAMVMSKVEDSIRAHKMK 209 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~ 209 (242)
..++..++..|++++..+...+
T Consensus 1863 s~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1863 SIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred CccCHHHHHHHHHHHHhhhhhc
Confidence 8999999999999998775544
|
|
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=243.70 Aligned_cols=166 Identities=23% Similarity=0.377 Sum_probs=148.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||.|+|..+++.|+.|.++++.+|| |.+|.+++.+|+.|+..+ |||+||||+|+++|+|+..+ .+...+++|+||+
T Consensus 716 ~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLT 793 (952)
T KOG0735|consen 716 LLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLT 793 (952)
T ss_pred HHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCC-CCchHHHHHHHHH
Confidence 58999999999999999999999988 999999999999999887 99999999999999998876 5668899999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+|| +.-.+|.|+|+|.||+.|||||+ ||+|+.++-++|+..+|.+|++.....+.. .+++|+
T Consensus 794 elDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----------~~~vdl--- 859 (952)
T KOG0735|consen 794 ELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----------DTDVDL--- 859 (952)
T ss_pred hhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----------ccccch---
Confidence 997 44558999999999999999999 899999999999999999999998765322 234565
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
+.+|..|+|||||||+.|+-.|..++.
T Consensus 860 -~~~a~~T~g~tgADlq~ll~~A~l~av 886 (952)
T KOG0735|consen 860 -ECLAQKTDGFTGADLQSLLYNAQLAAV 886 (952)
T ss_pred -HHHhhhcCCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999987665543
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=245.27 Aligned_cols=189 Identities=24% Similarity=0.358 Sum_probs=160.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|+++++||+.++++++.+.+ |.+++.++.+|..|+..+ ||||||||+|.++.++.... ......+.+++|
T Consensus 103 ~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 181 (495)
T TIGR01241 103 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 181 (495)
T ss_pred HHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHH
Confidence 48999999999999999999998865 899999999999999887 99999999999998876532 234466889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. ..++++||+|||+|+.|||+++ +|||+.|++++|+.++|.+||+.++.+.+.. .++++
T Consensus 182 L~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----------~~~~l- 249 (495)
T TIGR01241 182 LVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----------PDVDL- 249 (495)
T ss_pred HhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----------cchhH-
Confidence 999973 4457999999999999999999 6999999999999999999999999763221 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|..|.||||+||+++|++|...+.......++.++++.|+++...+
T Consensus 250 ---~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 250 ---KAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999965444444455689999999999988754
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=235.73 Aligned_cols=187 Identities=26% Similarity=0.336 Sum_probs=156.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
||++|||.|+++.|+.+++++|.+|| |++|+.++.+|..|+..+ |+||||||+|+++..| .++.++..++...+||.
T Consensus 201 mL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~q-PsvifidEidslls~R-s~~e~e~srr~ktefLi 278 (428)
T KOG0740|consen 201 MLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLL 278 (428)
T ss_pred HHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhc-CCcccccchhhhhHHHh
Confidence 69999999999999999999999988 999999999999999887 9999999999999999 44446667888899988
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+++ ...++|+||||||+||.+|.++++||...++||+|+.+.|..+|+.++.+. ...+.+.|+
T Consensus 279 q~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----------~~~l~~~d~--- 345 (428)
T KOG0740|consen 279 QFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----------PNGLSDLDI--- 345 (428)
T ss_pred hhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----------CCCccHHHH---
Confidence 875 445589999999999999999999999999999999999999999999873 233444555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-------------cCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS-------------EDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~-------------~~~~~~~~~~~~a~~~~~ 203 (242)
+.+++.|+|||++||..+|.+|...-... .-..++..++..+++.+.
T Consensus 346 -~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 346 -SLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred -HHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhc
Confidence 89999999999999999998553222211 112566667777766553
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=248.37 Aligned_cols=189 Identities=24% Similarity=0.350 Sum_probs=162.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
++|+++|+++++||+.++++++.+.+ |.+...++.+|..|+... ||||||||+|.++.+|+.. +.+....+.+++|
T Consensus 200 ~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred HHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 47999999999999999999998865 888999999999999887 9999999999999888653 2344566889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. ...+++||+|||+|+.||++++ +|||+.|+|++|+.++|.+||+.|+.+.++. .++|+
T Consensus 279 L~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-----------~~~d~- 346 (644)
T PRK10733 279 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----------PDIDA- 346 (644)
T ss_pred HHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-----------CcCCH-
Confidence 999973 3457999999999999999999 6999999999999999999999999875432 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|+.|.||||+||.++|++|...+.......++..++++|++++..+
T Consensus 347 ---~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 347 ---AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ---HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 8899999999999999999966555555556689999999999887654
|
|
| >KOG0726|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-32 Score=223.79 Aligned_cols=189 Identities=19% Similarity=0.315 Sum_probs=166.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc--hHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS--ESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~--~~~~~~l~~l 77 (242)
|||+|+|+...+.|+.+-++++..+| |++.+.++++|..|..++ |+|+||||||+++.+|-+.+.. .+.++.+.+|
T Consensus 234 LLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLEL 312 (440)
T KOG0726|consen 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 312 (440)
T ss_pred HHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHH
Confidence 69999999999999999999999877 999999999999999999 9999999999999999665533 3466778899
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|+++| ...+.|-||++||+.+.|||||+ ||+|++|+||.||...++.||..|..++.+. +++.+
T Consensus 313 LNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-----------~dVnl- 380 (440)
T KOG0726|consen 313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-----------EDVNL- 380 (440)
T ss_pred HHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-----------ccccH-
Confidence 99997 44567999999999999999999 8999999999999999999999999864332 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+...-+.+|||||+++|.+|-..++...+-.++.+||.+|.+.+...
T Consensus 381 ---e~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 381 ---EELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ---HHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7888888889999999999977777777777799999999999998754
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=214.72 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=168.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|+|++..+.|+.|.++++..+| |++.+.++.+|..|++++ |+||||||+|+++.+|-+.+. ..+.++++-+|
T Consensus 204 ml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena-psiifideidaiatkrfdaqtgadrevqril~el 282 (408)
T KOG0727|consen 204 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIATKRFDAQTGADREVQRILIEL 282 (408)
T ss_pred HHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhhhhccccccccHHHHHHHHHH
Confidence 79999999999999999999999887 999999999999999998 999999999999999876543 34578899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|-||++||+.+.|||||+ ||+|++|+||+|+.-+++-+|.....++++. +++|+
T Consensus 283 lnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-----------~~vdl- 350 (408)
T KOG0727|consen 283 LNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-----------DEVDL- 350 (408)
T ss_pred HHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-----------cccCH-
Confidence 99998 44567999999999999999999 8999999999999999999999999876554 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+..+-+..||+||..+|++|-..+....+..+...+|+++-...++.
T Consensus 351 ---e~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 351 ---EDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred ---HHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 8999999999999999999977666666777799999999998877654
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=228.76 Aligned_cols=191 Identities=22% Similarity=0.359 Sum_probs=163.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.++++++.+++ |++++.++.+|..|+..+ ||||||||+|.+++.|.+... .....+.+.+|
T Consensus 180 ~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~l 258 (389)
T PRK03992 180 LLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 258 (389)
T ss_pred HHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 999999999999988765432 23456778889
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ..++++||+|||+++.+|++++ ||||..|+|++|+.++|.+||+.++.++++. .++++
T Consensus 259 L~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-----------~~~~~- 326 (389)
T PRK03992 259 LAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-----------DDVDL- 326 (389)
T ss_pred HHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-----------CcCCH-
Confidence 888863 3457999999999999999999 6999999999999999999999999864332 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..+|..|+||||+||+++|++|...+.......++.+||++|+..+.....
T Consensus 327 ---~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 327 ---EELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 899999999999999999997766666666678999999999999865433
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=242.04 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=161.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||+++|+++++||+.++++++...+ |.+...++.+|..|+... ||||||||+|.++..|+.. +.+....+.+++|
T Consensus 231 ~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 309 (638)
T CHL00176 231 LLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQL 309 (638)
T ss_pred HHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHH
Confidence 48999999999999999999998755 788889999999999887 9999999999999877543 2344566889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+. .+.+++||+|||+++.+|++++ ||||+.|+|++|+.++|.+||+.++++.... . +
T Consensus 310 L~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-----------~----d 374 (638)
T CHL00176 310 LTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-----------P----D 374 (638)
T ss_pred HhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-----------h----h
Confidence 999973 3457999999999999999999 7999999999999999999999999862211 1 4
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKM 208 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 208 (242)
.++..+|..|.||||+||+++|++|...+.......++.+++..|+++++.+..+
T Consensus 375 ~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~ 429 (638)
T CHL00176 375 VSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEG 429 (638)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhcc
Confidence 4559999999999999999999965444444555689999999999998766443
|
|
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=213.88 Aligned_cols=195 Identities=19% Similarity=0.321 Sum_probs=171.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|+|||+|+..++.|+.|-++++..+| |++.+.++++|+.|+... -|||||||||++++.|-+.+ +..+.++.+.++
T Consensus 226 l~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk-aciiffdeidaiggarfddg~ggdnevqrtmlel 304 (435)
T KOG0729|consen 226 LCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL 304 (435)
T ss_pred HHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc-eEEEEeeccccccCccccCCCCCcHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999776 79999999999999997653 455678888999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
++++| ...++|-|+++||+|+.|||||+ ||+|++++|.+|+.+.|..||+.|.+.+... .++-|
T Consensus 305 i~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-----------rdir~- 372 (435)
T KOG0729|consen 305 INQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-----------RDIRF- 372 (435)
T ss_pred HHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-----------cchhH-
Confidence 99997 56678999999999999999999 8999999999999999999999998764332 12334
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVR 211 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (242)
+-||+.|..-||++|+.+|.+|-.-+...++...|+.+|..|+++++.++.+...
T Consensus 373 ---ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kfsa 427 (435)
T KOG0729|consen 373 ---ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFSA 427 (435)
T ss_pred ---HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccC
Confidence 7799999999999999999966666666778899999999999999999876544
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=226.49 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=162.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++++.+++ |++++.++.+|..|+... ||||||||||.++.+|.... ......+.+.+|
T Consensus 232 ~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~L 310 (438)
T PTZ00361 232 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLEL 310 (438)
T ss_pred HHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHH
Confidence 58999999999999999999998866 999999999999999887 99999999999998875433 233456778889
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ...++.||+|||+++.||++++ ||||++|+|++|+.++|.+||+.++.++.+. +++|+
T Consensus 311 L~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-----------~dvdl- 378 (438)
T PTZ00361 311 LNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-----------EDVDL- 378 (438)
T ss_pred HHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-----------cCcCH-
Confidence 999863 3557999999999999999998 7999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..++..|+||||+||+++|++|...+.......++.+|+.+|++++...
T Consensus 379 ---~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 379 ---EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred ---HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 8999999999999999999976666666666799999999999998654
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=211.75 Aligned_cols=215 Identities=56% Similarity=0.925 Sum_probs=198.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
|+||-||.++|+.+-.+.+.++.-...+....|.++|+.|+...++-+|||||.|.|+..|+...+++..+..+|.||-.
T Consensus 399 m~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR 478 (630)
T KOG0742|consen 399 MFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 478 (630)
T ss_pred HHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH
Confidence 68999999999999999999998877788889999999999998899999999999999999999999999999999988
Q ss_pred hccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc------------cccccC
Q psy4165 81 TGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK------------RRLKVA 148 (242)
Q Consensus 81 l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~------------~~~~~~ 148 (242)
-+..+..++++.+||+|.++|.|+..|||..|+||+|..++|..||..||.++-..+..+++ .++.++
T Consensus 479 TGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~ 558 (630)
T KOG0742|consen 479 TGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLA 558 (630)
T ss_pred hcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeec
Confidence 88888899999999999999999999999999999999999999999999998877777774 678888
Q ss_pred CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhccccc
Q psy4165 149 PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQ 216 (242)
Q Consensus 149 ~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (242)
.++++..|.+.|+.|+||||++|..|+..+++++++..+.+++...+.+.+...+.....+. |...+
T Consensus 559 ~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~-~La~e 625 (630)
T KOG0742|consen 559 GFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRM-WLAAE 625 (630)
T ss_pred cchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 88988899999999999999999999999999999999999999999999999888777666 55433
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=223.48 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=154.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++++|+|++.++.++.++++.+.+++ |++++++++.|++|..++.|+||||||+|+++++|...+. ..++++.++++
T Consensus 233 ~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqllt 310 (693)
T KOG0730|consen 233 FLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLT 310 (693)
T ss_pred HHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHH
Confidence 58999999999999999999999876 9999999999999998877999999999999999987663 57788999999
Q ss_pred Hhcc--CCCCeEEEEecCCcccccHHHh-cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTGE--QSDKFMLVLASNTPQQFDWAVN-DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~~--~~~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+. ..++++||++||+|+.||++++ ||||+.++++.|+..+|.+|++.++++++.. + +.++
T Consensus 311 L~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-----------~----~~~l 375 (693)
T KOG0730|consen 311 LLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-----------S----DVDL 375 (693)
T ss_pred HHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-----------c----hhhH
Confidence 9974 3478999999999999999999 6999999999999999999999999875432 2 3445
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..+|..|.||+|+||..+|..|...+... +++++..|+...
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i 416 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGI 416 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcC
Confidence 99999999999999999998554444332 566666665443
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=207.46 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhC----CCcEEEEEecccccccccCCCccchHHHHHH-
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSS----RKGLVLFIDEADAFLRKRSSETISESLRATL- 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l- 74 (242)
++|+|||+++|++++.+++++|.++| ||+|+.|+++|..|+.. .+||||||||||+++++|++.+ .....+++
T Consensus 163 llAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~-~tv~~qiV~ 241 (413)
T PLN00020 163 FQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ-YTVNNQMVN 241 (413)
T ss_pred HHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC-cchHHHHHH
Confidence 58999999999999999999999987 99999999999999853 2599999999999999987543 33334454
Q ss_pred HHHHHHhcc--------------CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchh
Q psy4165 75 NAFLYRTGE--------------QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 75 ~~lL~~l~~--------------~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~ 138 (242)
.+||+.||. ...+|+||+|||+|+.|||+|+ ||||+.+ ..|+.++|.+||+.++++.++
T Consensus 242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--- 316 (413)
T PLN00020 242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--- 316 (413)
T ss_pred HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC---
Confidence 789988763 2456999999999999999999 6999864 589999999999999986322
Q ss_pred hhcccccccCCCChhHhHHHHHHhCCC----CCHHHHHHHHH
Q psy4165 139 AQGKRRLKVAPFDYTSLCSKIAHVTEG----LSGREIAKLGV 176 (242)
Q Consensus 139 ~~~~~~~~~~~~d~~~~l~~la~~t~g----~s~adi~~lv~ 176 (242)
+ ..++..|++.+.| |.||--..++.
T Consensus 317 ---------~----~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 317 ---------S----REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ---------C----HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 2 3445888888877 56665555554
|
|
| >KOG0651|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=203.93 Aligned_cols=187 Identities=22% Similarity=0.367 Sum_probs=160.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch--HHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE--SLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~--~~~~~l~~l 77 (242)
++|+++|...|++|+.+..+.+.+++ ||+.+.|++.|..|+... ||||||||||++++++.++..+. ..++.+-++
T Consensus 181 lla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 181 LLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred HHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 99999999999999996665333 366778889
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ +.-++|-+|+|||+|+.|||+|+ ||.|+.+++|.|+...|..|++.+-..+.. ..++|+
T Consensus 260 lnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-----------~Geid~- 327 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-----------HGEIDD- 327 (388)
T ss_pred HHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-----------cccccH-
Confidence 99997 45568999999999999999999 899999999999999999999988766433 245666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh--cCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYAS--EDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+.+..+||.|+|+++.|. ++-.++. .+..+-.++++.++.++...
T Consensus 328 ---eaivK~~d~f~gad~rn~~t--Eag~Fa~~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 328 ---EAILKLVDGFNGADLRNVCT--EAGMFAIPEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred ---HHHHHHHhccChHHHhhhcc--cccccccchhhHHHhHHHHHHHHHHHHHH
Confidence 89999999999999999999 4444443 33477788999988877543
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=206.51 Aligned_cols=186 Identities=25% Similarity=0.394 Sum_probs=158.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
++|+++|++++.+|+.+.++++..++ |++...++.+|..++... |+||||||+|.++..+..... .....+.+.++
T Consensus 171 ~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred HHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 48999999999999999998887765 899999999999999877 999999999999987754332 23456677888
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+++. ..+++.||+|||+++.+|++++ +|||+.|+|++|+.++|.+||+.++.+..+. .++++
T Consensus 250 l~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-----------~~~~~- 317 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-----------EDVDL- 317 (364)
T ss_pred HHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-----------ccCCH-
Confidence 888863 3468999999999999999999 6999999999999999999999998764322 23555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..++..|+||+|+||+++|++|...+.......++.+|+.+|+..+
T Consensus 318 ---~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 318 ---EAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 8999999999999999999977777777777799999999999765
|
Many proteins may score above the trusted cutoff because an internal |
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-27 Score=207.31 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=159.9
Q ss_pred ChHHHHHHhcCC-cEEEEecCCccccc-chHHHHHHHHHHHHHhC-------CCcEEEEEecccccccccCCCcc-chHH
Q psy4165 1 MFAKKLAHHSGM-DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSS-------RKGLVLFIDEADAFLRKRSSETI-SESL 70 (242)
Q Consensus 1 llA~aiA~e~~~-~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~-------~~p~Il~iDeiD~l~~~r~~~~~-~~~~ 70 (242)
|+||.|.+.+|+ +--.|+++++++|| |++|.+++++|..|.+- +.-.||+|||||++|.+|++..+ .+..
T Consensus 271 LiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh 350 (744)
T KOG0741|consen 271 LIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH 350 (744)
T ss_pred HHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc
Confidence 579999999887 56778999999987 99999999999988641 12589999999999999988664 5556
Q ss_pred HHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc
Q psy4165 71 RATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK 146 (242)
Q Consensus 71 ~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~ 146 (242)
..++|+||..|| +.-++|+|||.|||.+.||.||+ |||..++++.+||++.|.+|++.|.+++.-+ ++-
T Consensus 351 D~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~-------~~l 423 (744)
T KOG0741|consen 351 DTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN-------NKL 423 (744)
T ss_pred HHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc-------CCC
Confidence 789999999997 56678999999999999999999 8999999999999999999999999876322 233
Q ss_pred cCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----c-----------CCCccHHHHHHHHHHHH
Q psy4165 147 VAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS----E-----------DGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 147 ~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~-----------~~~~~~~~~~~a~~~~~ 203 (242)
-+++|+ ++||.+|..||||+|+.||+.|..-+... . .-.++..||..|++.+.
T Consensus 424 ~~dVdl----~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 424 SADVDL----KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred CCCcCH----HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 344565 99999999999999999999776555422 0 11688999999988653
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=204.29 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=148.2
Q ss_pred ChHHHHHHhcCCc----------EEEEecCCccccc-chHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHSGMD----------YAIMTGGDVAPMG-SSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~~~~----------~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|+++|++++.+ |+.++++++.+++ |++++.++.+|..|+.. ..||||||||+|.++.+|+.+..
T Consensus 231 ~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s 310 (512)
T TIGR03689 231 LIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS 310 (512)
T ss_pred HHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc
Confidence 4899999998654 6677888888876 99999999999999864 14999999999999998876544
Q ss_pred chHHHHHHHHHHHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhc-cccchhhhc
Q psy4165 67 SESLRATLNAFLYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDK-FVLQPAAQG 141 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~-~~~~~~~~~ 141 (242)
++..+.++++||+.|+. ..++++||+|||+++.||||++ ||||.+|+|++|+.++|++||+.|+.+ +++......
T Consensus 311 ~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~ 390 (512)
T TIGR03689 311 SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAE 390 (512)
T ss_pred chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHH
Confidence 44456788999999973 3467999999999999999999 599999999999999999999999874 222111000
Q ss_pred ccccccCCCChhHhHHHHH-------------------------HhCCCCCHHHHHHHHHHHHHHHhh----hcCCCccH
Q psy4165 142 KRRLKVAPFDYTSLCSKIA-------------------------HVTEGLSGREIAKLGVAWQASAYA----SEDGVLTE 192 (242)
Q Consensus 142 ~~~~~~~~~d~~~~l~~la-------------------------~~t~g~s~adi~~lv~~a~~~~~~----~~~~~~~~ 192 (242)
.......++...+..+. ..++.+||++|+++|..|+..+.. .....++.
T Consensus 391 --~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~ 468 (512)
T TIGR03689 391 --FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRI 468 (512)
T ss_pred --hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCH
Confidence 00000111111111111 125678899999999877655542 23357888
Q ss_pred HHHHHHHHHHHHh
Q psy4165 193 AMVMSKVEDSIRA 205 (242)
Q Consensus 193 ~~~~~a~~~~~~~ 205 (242)
+++..|+......
T Consensus 469 ~~l~~a~~~e~~~ 481 (512)
T TIGR03689 469 EHLLAAVLDEFRE 481 (512)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888766433
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=202.93 Aligned_cols=166 Identities=22% Similarity=0.365 Sum_probs=141.1
Q ss_pred ChHHHHHHhcC-----CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHSG-----MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~-----~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|.|+|+|..+. +.|+.-+++++.++| |+.|+.++.+|++|++.. |+|||+||||-+++.|++.. ......++
T Consensus 314 l~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskq-Eqih~SIv 391 (1080)
T KOG0732|consen 314 LMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQ-EQIHASIV 391 (1080)
T ss_pred HHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchH-HHhhhhHH
Confidence 47899998876 468888899999988 999999999999999998 99999999999999997754 22244667
Q ss_pred HHHHHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 75 NAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 75 ~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
.+||.-|+ ...+.|+||||||||+.+|||++ ||||+.++|++|+.+.|..|+..+..+.... +
T Consensus 392 STLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~-------------i 458 (1080)
T KOG0732|consen 392 STLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP-------------I 458 (1080)
T ss_pred HHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC-------------C
Confidence 88888886 56678999999999999999998 8999999999999999999999999875321 1
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
. ...+..+|+.|.||-|+||+.+|. +|+..+
T Consensus 459 ~-~~l~~~la~~t~gy~gaDlkaLCT--eAal~~ 489 (1080)
T KOG0732|consen 459 S-RELLLWLAEETSGYGGADLKALCT--EAALIA 489 (1080)
T ss_pred C-HHHHHHHHHhccccchHHHHHHHH--HHhhhh
Confidence 1 445688999999999999999998 444444
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=198.08 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=152.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||++||++++.+++.++++++.+++ |+++..++.+|+.|.... |+||||||+|.+++++.... .+..++++++|+.
T Consensus 227 ~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~ 304 (733)
T TIGR01243 227 LLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLT 304 (733)
T ss_pred HHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 99999999999998876543 3334677888888
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ...++++||++||+++.||++++ +||+..+++++|+.++|.+||+.++..+.+. .+.++
T Consensus 305 ~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-----------~d~~l--- 370 (733)
T TIGR01243 305 LMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-----------EDVDL--- 370 (733)
T ss_pred HhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-----------cccCH---
Confidence 886 34567999999999999999999 6999999999999999999999888753321 23444
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-------------------cCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS-------------------EDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~-------------------~~~~~~~~~~~~a~~~~~ 203 (242)
+.++..|+||+++||..+|+.+...+... ..-.++.+++..++..+.
T Consensus 371 -~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 371 -DKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred -HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcc
Confidence 89999999999999999998654443321 111467788888877554
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=151.85 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=152.9
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH-
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY- 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~- 79 (242)
+++++|.++|+|++.++|.++.+.. +.+|..+...|..|+... |+|||+-++|.|...+.++. .-.....+..++.
T Consensus 447 ~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dgge-d~rl~~~i~~~ls~ 524 (953)
T KOG0736|consen 447 VVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDGGE-DARLLKVIRHLLSN 524 (953)
T ss_pred HHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCCch-hHHHHHHHHHHHhc
Confidence 6899999999999999999998765 788999999999999998 99999999999985544422 2223334444443
Q ss_pred Hhc-cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHH
Q psy4165 80 RTG-EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSK 158 (242)
Q Consensus 80 ~l~-~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 158 (242)
+.. ....+++||+||+..+.+++.+++-|-..|.++.|+.++|.+||++|+....++. +..++.
T Consensus 525 e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~---------------~v~~k~ 589 (953)
T KOG0736|consen 525 EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ---------------DVNLKQ 589 (953)
T ss_pred ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch---------------HHHHHH
Confidence 221 2445799999999999999999999999999999999999999999998644332 455599
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHh----hhc----------------CCCccHHHHHHHHHHHHHhh--------hhhh
Q psy4165 159 IAHVTEGLSGREIAKLGVAWQASAY----ASE----------------DGVLTEAMVMSKVEDSIRAH--------KMKV 210 (242)
Q Consensus 159 la~~t~g~s~adi~~lv~~a~~~~~----~~~----------------~~~~~~~~~~~a~~~~~~~~--------~~~~ 210 (242)
++.+|.|||.+|++.++...-.++. ... ...++++||.+++.+.-... -+++
T Consensus 590 ~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV 669 (953)
T KOG0736|consen 590 LARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNV 669 (953)
T ss_pred HHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCcc
Confidence 9999999999999999864411111 111 12789999999998664332 3346
Q ss_pred hcccccC
Q psy4165 211 RWQSEQE 217 (242)
Q Consensus 211 ~~~~~~~ 217 (242)
.|-|..+
T Consensus 670 ~WdDVGG 676 (953)
T KOG0736|consen 670 SWDDVGG 676 (953)
T ss_pred chhcccC
Confidence 6666554
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=125.01 Aligned_cols=114 Identities=29% Similarity=0.433 Sum_probs=98.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+|+++|+.++.+++.++++.+.+.+ +++++.+.++|..++...+||||||||+|.+++.. +..........+..|+..
T Consensus 14 l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~ 92 (132)
T PF00004_consen 14 LARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSL 92 (132)
T ss_dssp HHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccccccccccceeeec
Confidence 7999999999999999999998655 89999999999999877558999999999999988 333456677788888888
Q ss_pred hccCC---CCeEEEEecCCcccccHHHh-cccccEEEeCC
Q psy4165 81 TGEQS---DKFMLVLASNTPQQFDWAVN-DRLDEMVEFPL 116 (242)
Q Consensus 81 l~~~~---~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~ 116 (242)
++... .+++||+|||.++.+|++++ +||+..|++|+
T Consensus 93 l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 93 LDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 86333 46999999999999999999 99999999974
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=144.07 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=153.1
Q ss_pred hHHHHHHhcC----CcEEEEecCCcccc-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc-cchHHHHHHH
Q psy4165 2 FAKKLAHHSG----MDYAIMTGGDVAPM-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET-ISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~~----~~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~-~~~~~~~~l~ 75 (242)
||+++++++. +++..++|+.+... .....+.++.+|.+|-.++ |+||++|++|.+++..++++ ..+.....+.
T Consensus 447 L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla 525 (952)
T KOG0735|consen 447 LVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLA 525 (952)
T ss_pred HHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHH
Confidence 7899998865 56788999998753 4666788999999999888 99999999999998443332 2344556667
Q ss_pred HHHHHh----ccCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRT----GEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l----~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.||+++ ...+..|.||+|.+....|+|-|. ++|+.++.++.|+..+|.+||+..+++.... ..
T Consensus 526 ~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~----------~~- 594 (952)
T KOG0735|consen 526 AFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSD----------IT- 594 (952)
T ss_pred HHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhh----------hh-
Confidence 777665 356667899999999999999999 8999999999999999999999999863211 11
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHHHHHhhhhhh
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS----EDGVLTEAMVMSKVEDSIRAHKMKV 210 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (242)
..+|+-++..|+||.+.|+.-+|.+|...++-. ....+|.++|.++++.+.....+..
T Consensus 595 ---~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 595 ---MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGI 656 (952)
T ss_pred ---hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhc
Confidence 223456999999999999999999887777622 2228999999999999876655543
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=134.66 Aligned_cols=202 Identities=18% Similarity=0.213 Sum_probs=150.0
Q ss_pred hHHHHHHhcCC---------cEEEEecCCccccc-chHHHHHHHHHHHHHhCC--C--cEEEEEecccccccccCC---C
Q psy4165 2 FAKKLAHHSGM---------DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSR--K--GLVLFIDEADAFLRKRSS---E 64 (242)
Q Consensus 2 lA~aiA~e~~~---------~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~--~--p~Il~iDeiD~l~~~r~~---~ 64 (242)
|+||+|..+.+ .++++++..+.+|| +|+-+.+.++|++..+.- + -..++|||+++++..|.+ .
T Consensus 193 LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~ 272 (423)
T KOG0744|consen 193 LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSR 272 (423)
T ss_pred HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcC
Confidence 78999998764 57899999999998 999999999999887642 1 356789999999988733 3
Q ss_pred ccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccch---hh
Q psy4165 65 TISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQP---AA 139 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~---~~ 139 (242)
+...+.-+++|.+|++|| ....+|++++|+|-.+.||.|+..|-|.+.++++|+.+.|.+|++..+..+-... ..
T Consensus 273 ~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~ 352 (423)
T KOG0744|consen 273 NEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFH 352 (423)
T ss_pred CCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeee
Confidence 345567789999999998 5566788889999999999999999999999999999999999999987642111 00
Q ss_pred hcccccccCCCCh-hHhHHHHHHh-CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhh
Q psy4165 140 QGKRRLKVAPFDY-TSLCSKIAHV-TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAH 206 (242)
Q Consensus 140 ~~~~~~~~~~~d~-~~~l~~la~~-t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 206 (242)
....+.... ..+ ......+... +.|+||+-|+.|-. .+.+.-.+...++.+.|..++...++..
T Consensus 353 ~~s~~~~~~-i~~~~~~~~~~~~~~~~gLSGRtlrkLP~--Laha~y~~~~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 353 QRSTGVKEF-IKYQKALRNILIELSTVGLSGRTLRKLPL--LAHAEYFRTFTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred ccchhhhHH-hHhhHhHHHHHHHHhhcCCccchHhhhhH--HHHHhccCCCccChHHHHHHHHHHHHHH
Confidence 000001000 111 1122334444 48999999999875 3344444456899999999988877654
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=123.14 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=116.7
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.+. .+++.++.+++.+.+ |+++.....+|+.|. ++||||||+|.+...++.. .....
T Consensus 74 ~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~---~~~~e 146 (287)
T CHL00181 74 TVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNER---DYGSE 146 (287)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCcc---chHHH
Confidence 47899988742 369999999988755 888777888888864 6899999999997643321 22356
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.+..|+..|+...++++||++++... .++|++.+||+..|+|++++.+++.+|++.++.+... .+
T Consensus 147 ~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~----------~l 216 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY----------QL 216 (287)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC----------CC
Confidence 77888888877777788888876421 3469999999999999999999999999999987422 22
Q ss_pred CCCChhHhHHHHHHhC--CCCC-HHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVT--EGLS-GREIAKLGVAWQ 179 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t--~g~s-~adi~~lv~~a~ 179 (242)
++-.....++.+.+.. +.|. ++++++++..+.
T Consensus 217 ~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 217 TPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred ChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 2211222233344332 3455 899999997543
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=127.44 Aligned_cols=186 Identities=22% Similarity=0.280 Sum_probs=151.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++++++|.+ +.+++.++++.+.+++ |+++..++.+|..++..+ |+++++||+|.+.+.+.. ........++.+++.
T Consensus 33 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~ 109 (494)
T COG0464 33 LLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA-PSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLA 109 (494)
T ss_pred HHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC-CCeEeechhhhcccCccc-cccchhhHHHHHHHH
Confidence 468889988 7777888899988876 999999999999999998 899999999999999888 435556778888888
Q ss_pred HhccC-CCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTGEQ-SDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~~~-~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.++.. ...+++++.||++..+|++++ +||+..++++.|+...|.+|+......+... ...+.
T Consensus 110 ~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~-----------~~~~~---- 174 (494)
T COG0464 110 LMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLG-----------PPGTG---- 174 (494)
T ss_pred hcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCc-----------ccccH----
Confidence 87521 334888899999999999999 8999999999999999999999998754322 13444
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhc------CCCccHHHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASE------DGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~------~~~~~~~~~~~a~~~~~~ 204 (242)
..++..+.||+++|+..++..+........ ...++.+++.++++.+..
T Consensus 175 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 175 KTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 899999999999999999975433333222 226788888888887643
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=134.40 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=126.7
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ ++.++.++++.+.. ++ |+.+..++++|+.++... |+||||||+|.+++.+...+++.
T Consensus 219 l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~~~~~ 297 (731)
T TIGR02639 219 IAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEP-NAILFIDEIHTIVGAGATSGGSM 297 (731)
T ss_pred HHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccC-CeEEEEecHHHHhccCCCCCccH
Confidence 688888887 78899999988873 44 999999999999998776 89999999999998654333222
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... +.|...+. ++.+.+||+||.. ..+|+++.+||+ .|+|+.|+.+++.+||+....++... .
T Consensus 298 ~~~---~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~------~ 365 (731)
T TIGR02639 298 DAS---NLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEF------H 365 (731)
T ss_pred HHH---HHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhc------c
Confidence 222 22333333 5679999999863 468999999997 79999999999999999877653211 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCCHH-----HHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLSGR-----EIAKLGVAWQASAYAS----EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s~a-----di~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~~ 202 (242)
++..+ +..+..++..+..|-+. ---.++.+|.+..... ....++.+++...+...
T Consensus 366 ~v~i~----~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 366 HVKYS----DEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred CcccC----HHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 11112 34456777777666543 2234555333322211 12357777777776665
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=116.69 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=99.8
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|..+. -+++.++++++.+.+ |+++..++.+|++|. ++||||||+|.+.+.+.. ......
T Consensus 73 ~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~---~~~~~~ 145 (284)
T TIGR02880 73 TVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNE---RDYGQE 145 (284)
T ss_pred HHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCc---cchHHH
Confidence 36878777653 279999998888755 888888889998875 699999999999754332 222346
Q ss_pred HHHHHHHHhccCCCCeEEEEecCC--ccc---ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNT--PQQ---FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~--~~~---ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
.+..|+..|+....+++||++++. ++. ++|+|.+||+..|+||+++.+++.+|++.++.+.
T Consensus 146 ~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 146 AIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 677888888777778888888754 333 4799999999999999999999999999999874
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=113.83 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=98.5
Q ss_pred ChHHHHHHhc---C----CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHS---G----MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~---~----~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+++ + .+++.++++++.+.+ |+++..++++|+.|. ++||||||+|.|... .. ......
T Consensus 57 tlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~--~~--~~~~~~ 128 (261)
T TIGR02881 57 TVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARG--GE--KDFGKE 128 (261)
T ss_pred HHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccC--Cc--cchHHH
Confidence 4788998863 2 378899999998866 999999999998875 689999999999632 11 122356
Q ss_pred HHHHHHHHhccCCCCeEEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.+..|+..|+...+.+++|++++. ...++|++.+||+..|+||.++.+++.+|++.++..
T Consensus 129 ~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 129 AIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 778899999877777777776543 234788999999999999999999999999999975
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0743|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=120.15 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=111.8
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc-----c-hHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI-----S-ESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~-----~-~~~~~~l~ 75 (242)
++-|+|++++..++.++.+.+.. +++ |+.++..+.. .+||+|+|||+-+..+..... . ....-.++
T Consensus 251 ~IaAmAn~L~ydIydLeLt~v~~---n~d--Lr~LL~~t~~---kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlS 322 (457)
T KOG0743|consen 251 FIAAMANYLNYDIYDLELTEVKL---DSD--LRHLLLATPN---KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLS 322 (457)
T ss_pred HHHHHHhhcCCceEEeeeccccC---cHH--HHHHHHhCCC---CcEEEEeecccccccccccccccccccCCcceeehH
Confidence 57899999999999998877632 333 8888887763 499999999998764433221 1 11234577
Q ss_pred HHHHHhc----cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRTG----EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l~----~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-||+.+| ..++.-++|+|||+++.|||||+ ||.|.+|+++..+.++-+.+++.||.-- ++
T Consensus 323 GLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~--------------~~ 388 (457)
T KOG0743|consen 323 GLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE--------------ED 388 (457)
T ss_pred HhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC--------------CC
Confidence 7888886 34445699999999999999999 7999999999999999999999999631 01
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
.++-..++.+...++ .||||+...+
T Consensus 389 h~L~~eie~l~~~~~-~tPA~V~e~l 413 (457)
T KOG0743|consen 389 HRLFDEIERLIEETE-VTPAQVAEEL 413 (457)
T ss_pred cchhHHHHHHhhcCc-cCHHHHHHHH
Confidence 233333344444444 7999998765
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=116.59 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=140.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
.||+.||+.++++|..+++.. .+.+.++++|+.|+... +..|||+|||+.|-. .....|
T Consensus 63 TlA~liA~~~~~~f~~~sAv~------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------~QQD~l 124 (436)
T COG2256 63 TLARLIAGTTNAAFEALSAVT------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------AQQDAL 124 (436)
T ss_pred HHHHHHHHhhCCceEEecccc------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------hhhhhh
Confidence 389999999999999999865 46789999999997654 259999999999943 233567
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh-hH
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY-TS 154 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~-~~ 154 (242)
|-.++ ++.|++|||| |....|.+||++|.. ++++.+.+.++..++++.-+.... +++....+.+ +.
T Consensus 125 Lp~vE--~G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~--------rgl~~~~~~i~~~ 193 (436)
T COG2256 125 LPHVE--NGTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEE--------RGLGGQIIVLDEE 193 (436)
T ss_pred hhhhc--CCeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhh--------cCCCcccccCCHH
Confidence 77775 6678999877 889999999999985 899999999999999999543321 1222112222 22
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCCC
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG-VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 231 (242)
.++.++.. +.+|.+.+++.++.+..+.+.+ .++.+.+++.+++..... .+.....++-..+...+..||.|.
T Consensus 194 a~~~l~~~----s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 194 ALDYLVRL----SNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARF-DKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHh----cCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHhhccCCcC
Confidence 33555555 6679999999888887776555 455777777777665432 233344444444555556666554
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=124.34 Aligned_cols=183 Identities=13% Similarity=0.114 Sum_probs=121.6
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|... ++.++.++.+.+.. ++ |+.+..++.+|..++... |+||||||+|.+++.+...+...
T Consensus 223 lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~ 301 (758)
T PRK11034 223 IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQV 301 (758)
T ss_pred HHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHH
Confidence 677777653 66777777776652 44 899999999999998776 89999999999998765433222
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
....++..+| ..+.+.+||+||.++ ..|++|.+||+ .|+++.|+.+++..||+.+..++....
T Consensus 302 d~~nlLkp~L-----~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h------ 369 (758)
T PRK11034 302 DAANLIKPLL-----SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHH------ 369 (758)
T ss_pred HHHHHHHHHH-----hCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhcc------
Confidence 2333333333 356799999999865 57999999997 899999999999999999877653321
Q ss_pred ccccCCCChhHhHHHHHHhCC-----CCCHHHHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTE-----GLSGREIAKLGVAWQASAYA----SEDGVLTEAMVMSKVED 201 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~-----g~s~adi~~lv~~a~~~~~~----~~~~~~~~~~~~~a~~~ 201 (242)
++..+ +..+..++..+. .+-|...-.++.+|.+...- .....++.+++.+.+.+
T Consensus 370 ~v~i~----~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 370 DVRYT----AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred CCCcC----HHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 12112 222233333332 35566777777755433211 11224666666665443
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=124.03 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=91.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc---------ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA---------PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~---------~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++|++||++++.+++.++.+.+. ..| |.....+.+.|..+...+ | ||||||||.+.+...+ + .
T Consensus 362 ~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~-~-villDEidk~~~~~~~-~----~ 434 (775)
T TIGR00763 362 SLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKN-P-LFLLDEIDKIGSSFRG-D----P 434 (775)
T ss_pred HHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCC-C-EEEEechhhcCCccCC-C----H
Confidence 47999999999999999866442 123 666677888888887665 5 8899999999854221 1 1
Q ss_pred HHHHHHHHHHhcc---------------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 71 RATLNAFLYRTGE---------------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 71 ~~~l~~lL~~l~~---------------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.+.||..|+. ..+++++|+|||.++.||++|++||+ .|+|+.|+.+++.+|++.|+.
T Consensus 435 ---~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 435 ---ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ---HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH
Confidence 1233333321 12478999999999999999999996 899999999999999999884
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=105.12 Aligned_cols=170 Identities=19% Similarity=0.242 Sum_probs=118.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
.||+++|++++.++..++++.+. ....+..++... ..++||||||+|.+... ....+..++..
T Consensus 66 ~la~~ia~~l~~~~~~~~~~~~~-----~~~~l~~~l~~l---~~~~vl~IDEi~~l~~~---------~~e~l~~~~e~ 128 (328)
T PRK00080 66 TLANIIANEMGVNIRITSGPALE-----KPGDLAAILTNL---EEGDVLFIDEIHRLSPV---------VEEILYPAMED 128 (328)
T ss_pred HHHHHHHHHhCCCeEEEeccccc-----ChHHHHHHHHhc---ccCCEEEEecHhhcchH---------HHHHHHHHHHh
Confidence 37999999999998887766542 223345555443 23799999999998431 12222222221
Q ss_pred h------cc---------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 T------GE---------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l------~~---------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
. +. .-.++.+|++||++..++++|++||...++|++|+.+++.+|++......+.
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---------- 198 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV---------- 198 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----------
Confidence 1 10 1134789999999999999999999999999999999999999998876322
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
..+ +..++.|++.+.| +++.+..++..+...+.....+.++.+++..++...
T Consensus 199 ~~~----~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 199 EID----EEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CcC----HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 222 3345889999986 557888888754444444445688999988888654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-11 Score=116.47 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=110.9
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+.+|..+ +.+++.++.+.+.. .+ |+.+..++++|+.++....++||||||++.+.+.++..+ +.
T Consensus 224 l~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~ 302 (852)
T TIGR03345 224 VVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QG 302 (852)
T ss_pred HHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-cc
Confidence 567777654 35688888887763 34 999999999999998654489999999999998765432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... +.|+..+ ..+.+.+||||+.. ..+|+||.+||. .|+++.|+.+++..||+.+...+... .
T Consensus 303 d~~---n~Lkp~l--~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~------~ 370 (852)
T TIGR03345 303 DAA---NLLKPAL--ARGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKH------H 370 (852)
T ss_pred cHH---HHhhHHh--hCCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhc------C
Confidence 111 2233333 35679999999864 459999999996 89999999999999987776653221 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCC-----HHHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLS-----GREIAKLGVAWQA 180 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s-----~adi~~lv~~a~~ 180 (242)
++..+ +..+..++..+.+|- |.---.|+.+|.+
T Consensus 371 ~v~i~----d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 371 GVLIL----DEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred CCeeC----HHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 11112 344577777777663 3333445554433
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=100.98 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=114.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
.||+++|++++.++..+.++.+.. ...+...+.. ...+.||||||+|.+.+. ....+..++..
T Consensus 45 ~la~~ia~~~~~~~~~~~~~~~~~-----~~~l~~~l~~---~~~~~vl~iDEi~~l~~~---------~~e~l~~~~~~ 107 (305)
T TIGR00635 45 TLAHIIANEMGVNLKITSGPALEK-----PGDLAAILTN---LEEGDVLFIDEIHRLSPA---------VEELLYPAMED 107 (305)
T ss_pred HHHHHHHHHhCCCEEEeccchhcC-----chhHHHHHHh---cccCCEEEEehHhhhCHH---------HHHHhhHHHhh
Confidence 379999999999987776554321 1223333332 223789999999998532 11122222211
Q ss_pred h------c---------cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 T------G---------EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l------~---------~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
. + ....++++|++||++..+++++++||...+++++|+.+++.++++......+ +
T Consensus 108 ~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~----------~ 177 (305)
T TIGR00635 108 FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN----------V 177 (305)
T ss_pred hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC----------C
Confidence 1 0 0123478999999999999999999998999999999999999998886522 1
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
. ++ +..++.+++.+.| .++.+.+++..+...+.......++.+.+..++..
T Consensus 178 ~---~~-~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 178 E---IE-PEAALEIARRSRG-TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred C---cC-HHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 1 22 3445789999987 44777778874433333344457899999888876
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-12 Score=121.19 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=98.9
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCcc--ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVA--PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~--~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+++|..+ |.+++.++.+.+. .++ |+.+..++++|..+.....|+||||||+|.+.+.+.+.+ +
T Consensus 214 ~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~ 292 (857)
T PRK10865 214 AIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-A 292 (857)
T ss_pred HHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-c
Confidence 3678888887 7899999988876 345 999999999999876544489999999999997765433 2
Q ss_pred hHHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 68 ESLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
.....++..+ + ..+.+.+||||+..+ .+|+|+.+||+ .|.++.|+.+++..||+.+..++.
T Consensus 293 ~d~~~~lkp~---l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 293 MDAGNMLKPA---L--ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred hhHHHHhcch---h--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 2222233222 2 366899999998876 48999999998 689999999999999998876653
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=117.81 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=97.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCcc--ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVA--PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~--~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ +.+++.++.+.+. .++ |+.+..++.+|..+....+|+||||||+|.+++.+...+ ..
T Consensus 210 l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~ 288 (852)
T TIGR03346 210 IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM 288 (852)
T ss_pred HHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh
Confidence 577777764 7889999888875 344 899999999999997654489999999999987554332 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
. . ..+|..+ ...+.+.+||+|+..+ .+|+++.+||+ .|.++.|+.+++..||+.+..++..
T Consensus 289 d---~-~~~Lk~~-l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 289 D---A-GNMLKPA-LARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred H---H-HHHhchh-hhcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 1 2 2233322 2466799999998774 58999999997 6899999999999999998777544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=96.35 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=110.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
+||+++|+.++.+|+.+++... +...++.+++.+... .++.||||||+|.+.. ...+.|
T Consensus 51 tLA~~ia~~~~~~~~~l~a~~~------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------~~q~~L 112 (413)
T PRK13342 51 TLARIIAGATDAPFEALSAVTS------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------AQQDAL 112 (413)
T ss_pred HHHHHHHHHhCCCEEEEecccc------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------HHHHHH
Confidence 4799999999999999987643 344566677766432 2379999999999842 223455
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
+..++ .+.+++|++| |....+++++++|+ ..+.|++|+.++...+++..+..... +. -.++ +..
T Consensus 113 L~~le--~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~--------~~--i~i~-~~a 178 (413)
T PRK13342 113 LPHVE--DGTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER--------GL--VELD-DEA 178 (413)
T ss_pred HHHhh--cCcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc--------CC--CCCC-HHH
Confidence 55554 3557777765 44568999999999 58999999999999999998865210 11 0122 334
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
++.+++.+.| .++.+.+++ +.+... ...++.+++...+....
T Consensus 179 l~~l~~~s~G-d~R~aln~L---e~~~~~--~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 179 LDALARLANG-DARRALNLL---ELAALG--VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHhCCC-CHHHHHHHH---HHHHHc--cCCCCHHHHHHHHhhhh
Confidence 4677777633 444444444 333332 55788888888877643
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=98.38 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=109.9
Q ss_pred ChHHHHHHhcCC------------------------cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEec
Q psy4165 1 MFAKKLAHHSGM------------------------DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~------------------------~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDe 53 (242)
++|+++|+.+++ .++.++++. ..+...++++.+.+... ++..||||||
T Consensus 51 TlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE 125 (472)
T PRK14962 51 TVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDE 125 (472)
T ss_pred HHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEC
Confidence 479999999876 355555432 12234566666665532 2257999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+|.+. ...++.||..++..++.+++|++|+.+..+++++.+|+. .++|.+|+.++...+++..+...
T Consensus 126 ~h~Lt------------~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 126 VHMLT------------KEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred hHHhH------------HHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHc
Confidence 99983 234577888888777788888888888999999999996 89999999999999999888652
Q ss_pred ccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 134 VLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 134 ~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+ +.. + +..++.|++.+. +|++.+++..+...... .+.+|.+++.+++
T Consensus 193 g----------i~i---~-~eal~~Ia~~s~----GdlR~aln~Le~l~~~~-~~~It~e~V~~~l 239 (472)
T PRK14962 193 G----------IEI---D-REALSFIAKRAS----GGLRDALTMLEQVWKFS-EGKITLETVHEAL 239 (472)
T ss_pred C----------CCC---C-HHHHHHHHHHhC----CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 2 222 2 334577888754 34444444333332222 2348888877665
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=108.67 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|... +.+++.++.+.+.. ++ |+.+..++.+|+.++... |+||||||+|.+++.+...+ ..
T Consensus 216 l~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~g-~~ 293 (821)
T CHL00095 216 IAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENN-NIILVIDEVHTLIGAGAAEG-AI 293 (821)
T ss_pred HHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcC-CeEEEEecHHHHhcCCCCCC-cc
Confidence 677777765 47899999988763 45 999999999999998766 89999999999998765432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
....++... + ..+.+.+||+|+... ..|+++.+||. .|+++.|+.++...|++.....+... .
T Consensus 294 ~~a~lLkp~---l--~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~------~ 361 (821)
T CHL00095 294 DAANILKPA---L--ARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKH------H 361 (821)
T ss_pred cHHHHhHHH---H--hCCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHH------c
Confidence 122222222 2 256789999998764 57999999997 68999999999999998765432110 1
Q ss_pred ccccCCCChhHhHHHHHHhCCCCCH-----HHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEGLSG-----REIAKLGVAWQA 180 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g~s~-----adi~~lv~~a~~ 180 (242)
++. +. +..+..++..+.||.+ .---.++.+|.+
T Consensus 362 ~v~---i~-deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 362 NLS---IS-DKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred CCC---CC-HHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 111 22 3345677777777654 333445554433
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-09 Score=95.34 Aligned_cols=135 Identities=20% Similarity=0.181 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. ..+..|+||||+|.+. ....+.||..|++....+++|++|+.++.|.+++++|
T Consensus 104 d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 104 ENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 455665555442 1235799999999993 3467888999988888999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .+.|.+++.++-.+.++..+.+.+ +. ++ +..+..|++.++| +.+|.-+++. +..+.+ .
T Consensus 172 Cq-~~~f~~ls~~~i~~~L~~i~~~Eg----------i~---~e-~eAL~~Ia~~S~G-d~RdAL~lLe--q~i~~~--~ 231 (484)
T PRK14956 172 CQ-DFIFKKVPLSVLQDYSEKLCKIEN----------VQ---YD-QEGLFWIAKKGDG-SVRDMLSFME--QAIVFT--D 231 (484)
T ss_pred hh-eeeecCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcCC-hHHHHHHHHH--HHHHhC--C
Confidence 96 789999999988888888876522 21 22 3445778877664 4555555554 222222 3
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+.+.+
T Consensus 232 ~~it~~~V~~ 241 (484)
T PRK14956 232 SKLTGVKIRK 241 (484)
T ss_pred CCcCHHHHHH
Confidence 3466666544
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=89.76 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=93.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||+.||+++|++|..++++.+.. ...+..++...+ ++.|||||||+.+- +.+...|+..
T Consensus 65 TLA~IIA~e~~~~~~~~sg~~i~k-----~~dl~~il~~l~---~~~ILFIDEIHRln------------k~~qe~Llpa 124 (233)
T PF05496_consen 65 TLARIIANELGVNFKITSGPAIEK-----AGDLAAILTNLK---EGDILFIDEIHRLN------------KAQQEILLPA 124 (233)
T ss_dssp HHHHHHHHHCT--EEEEECCC--S-----CHHHHHHHHT-----TT-EEEECTCCC--------------HHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEeccchhhhh-----HHHHHHHHHhcC---CCcEEEEechhhcc------------HHHHHHHHHH
Confidence 489999999999999999876522 234555554443 36899999999993 2333455555
Q ss_pred hccC---------C---------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc
Q psy4165 81 TGEQ---------S---------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK 142 (242)
Q Consensus 81 l~~~---------~---------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~ 142 (242)
|++. . .+..+||||++...|.++|+.||.....+...+.++-.+|++.....++..
T Consensus 125 mEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~------ 198 (233)
T PF05496_consen 125 MEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE------ 198 (233)
T ss_dssp HHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E------
T ss_pred hccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC------
Confidence 5311 1 248899999999999999999999888999999999999999887664332
Q ss_pred cccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 143 RRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 143 ~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++ +....++|+++.| +|+---++++
T Consensus 199 ----i~----~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 199 ----ID----EDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----E-----HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred ----cC----HHHHHHHHHhcCC-ChHHHHHHHH
Confidence 22 2334789999985 7777666665
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-09 Score=95.54 Aligned_cols=140 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 29 GVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
+...++.+++.+... ++..|++|||+|.+. ...++.||+.+++.+..+++|++|+.++.+++.+.
T Consensus 109 ~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 109 SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 456788888877643 124799999999883 23567888888887888888888999999999999
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
+|+. .++|.+++.++...+++..+.+.+. . ++ +..+..++..++| +.+++-+++. ++..++.
T Consensus 177 SRc~-~~ef~~ls~~el~~~L~~i~~~egi----------~---ie-~eAL~~Ia~~s~G-slR~al~~Ld--kai~~~~ 238 (507)
T PRK06645 177 SRCQ-RYDLRRLSFEEIFKLLEYITKQENL----------K---TD-IEALRIIAYKSEG-SARDAVSILD--QAASMSA 238 (507)
T ss_pred hcce-EEEccCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhhc
Confidence 9995 8999999999999999999976321 1 12 3445789988875 8888888887 4444443
Q ss_pred c-CCCccHHHHHHH
Q psy4165 186 E-DGVLTEAMVMSK 198 (242)
Q Consensus 186 ~-~~~~~~~~~~~a 198 (242)
+ .+.+|.+++.+.
T Consensus 239 ~~~~~It~~~V~~l 252 (507)
T PRK06645 239 KSDNIISPQVINQM 252 (507)
T ss_pred cCCCCcCHHHHHHH
Confidence 2 335666665544
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=103.70 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=106.3
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHHhCC-----CcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR-----KGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~-----~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+|||+++ +.+++.+++++.. +...++++...+.... +.-|++|||+|.+. .
T Consensus 582 ~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt------------~ 644 (846)
T PRK04132 582 AALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPIGGASFKIIFLDEADALT------------Q 644 (846)
T ss_pred HHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC------------H
Confidence 789999997 5689999999852 2345666665543322 13699999999993 2
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..|+.+++.+.+|++||.+..+.++|++|+. .+.|++|+.++-...++....+. ++..+
T Consensus 645 ~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~~~E----------gi~i~--- 710 (846)
T PRK04132 645 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENE----------GLELT--- 710 (846)
T ss_pred HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHHHHHHHHhc----------CCCCC---
Confidence 34677888888888899999999999999999999985 89999999999998888877642 22211
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..+..++..+. +|++.+++..+.++
T Consensus 711 -~e~L~~Ia~~s~----GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 711 -EEGLQAILYIAE----GDMRRAINILQAAA 736 (846)
T ss_pred -HHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 334567776654 46666665444433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-09 Score=91.61 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ++..|++|||+|.+. ....+.||+.+++.+..+.+|++|+.++.+.+++.+|
T Consensus 102 ~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 102 EEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 4566666655422 124699999999883 2345678888887777888888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++..++++..+.+.+. .. + +..+..++..+.| +++++.+++. .+..+ ..
T Consensus 170 c~-~~~~~~l~~~el~~~L~~~~~~~g~----------~i---~-~~al~~ia~~s~G-~~R~al~~l~--~~~~~--~~ 229 (363)
T PRK14961 170 CL-QFKLKIISEEKIFNFLKYILIKESI----------DT---D-EYALKLIAYHAHG-SMRDALNLLE--HAINL--GK 229 (363)
T ss_pred ce-EEeCCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 94 8999999999999999998876321 11 1 3345778888765 7777777775 22233 35
Q ss_pred CCccHHHHHHHH
Q psy4165 188 GVLTEAMVMSKV 199 (242)
Q Consensus 188 ~~~~~~~~~~a~ 199 (242)
+.++.+++.+.+
T Consensus 230 ~~It~~~v~~~l 241 (363)
T PRK14961 230 GNINIKNVTDML 241 (363)
T ss_pred CCCCHHHHHHHH
Confidence 567777776654
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-09 Score=96.04 Aligned_cols=162 Identities=21% Similarity=0.218 Sum_probs=109.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC-----CCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS-----RKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~-----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.+|+++|+++|.+++.+++++..+ ...++.+...+... .++.||+|||+|.+.++.. ...+.
T Consensus 54 tla~ala~el~~~~ielnasd~r~-----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~ 120 (482)
T PRK04195 54 SLAHALANDYGWEVIELNASDQRT-----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGAR 120 (482)
T ss_pred HHHHHHHHHcCCCEEEEccccccc-----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHH
Confidence 379999999999999999987642 22344444333321 1378999999999865211 12234
Q ss_pred HHHHHhccCCCCeEEEEecCCcccccH-HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQFDW-AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~ld~-al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
.|+..+... +..+|+++|.+..+++ .+++|+. .|+|++|+..+...+++..+.+.+ +.+ + +.
T Consensus 121 aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~eg----------i~i---~-~e 183 (482)
T PRK04195 121 AILELIKKA--KQPIILTANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEG----------IEC---D-DE 183 (482)
T ss_pred HHHHHHHcC--CCCEEEeccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcC----------CCC---C-HH
Confidence 555555433 3356778899999888 6666664 899999999999999999987632 222 2 34
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
.++.|++.+ ++|++.+++..+. ++...+.++.+++...
T Consensus 184 aL~~Ia~~s----~GDlR~ain~Lq~--~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 184 ALKEIAERS----GGDLRSAINDLQA--IAEGYGKLTLEDVKTL 221 (482)
T ss_pred HHHHHHHHc----CCCHHHHHHHHHH--HhcCCCCCcHHHHHHh
Confidence 457788875 4589998885555 4444556777666433
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-09 Score=95.32 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=114.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chH-HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSG-VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~-e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+++++ +..++++++.++...+ ... ...+..+....+ .+.+|+|||+|.+.++. .....+
T Consensus 152 L~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~-------~~~~~l 221 (405)
T TIGR00362 152 LLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR---SVDLLLIDDIQFLAGKE-------RTQEEF 221 (405)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH---hCCEEEEehhhhhcCCH-------HHHHHH
Confidence 688898876 6788899887765432 111 112222222222 15799999999986432 122223
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+.. .++.+||.++..|.. +++.+.+||. ..++|++|+.++|..|++..+...+ +.++
T Consensus 222 ~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~----------~~l~- 289 (405)
T TIGR00362 222 FHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG----------LELP- 289 (405)
T ss_pred HHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC----------CCCC-
Confidence 333333322 234466666666665 5578889996 4799999999999999999987632 2222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||+++. -+.++|..+++...+.+.. ....+|.+.+.+++.....
T Consensus 290 ---~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~-~~~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 290 ---DEVLEFIAKNIR-SNVRELEGALNRLLAYASL-TGKPITLELAKEALKDLLR 339 (405)
T ss_pred ---HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc
Confidence 344588998886 5889999998855444332 3356899888888877643
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=89.72 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=108.8
Q ss_pred hHHHHHHhcC---------CcEEEEecCCccccc--------------------c-hHHHHHHHHHHHHHhCCCcEEEEE
Q psy4165 2 FAKKLAHHSG---------MDYAIMTGGDVAPMG--------------------S-SGVTAIHKVFDWASSSRKGLVLFI 51 (242)
Q Consensus 2 lA~aiA~e~~---------~~~~~v~~~~l~~~~--------------------g-~~e~~l~~~f~~A~~~~~p~Il~i 51 (242)
+++++++++. +++++++|....+.. | .....+..++.......+|.||+|
T Consensus 56 l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvI 135 (365)
T TIGR02928 56 VTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVL 135 (365)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5666766542 578888876543210 1 122345556665554445899999
Q ss_pred ecccccccccCCCccchHHHHHHHHHHHH--hc-cCCCCeEEEEecCCcc---cccHHHhcccc-cEEEeCCCCHHHHHH
Q psy4165 52 DEADAFLRKRSSETISESLRATLNAFLYR--TG-EQSDKFMLVLASNTPQ---QFDWAVNDRLD-EMVEFPLPTLNERER 124 (242)
Q Consensus 52 DeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l~-~~~~~v~vI~tTn~~~---~ld~al~~Rfd-~~i~~~~P~~~~R~~ 124 (242)
||+|.+... . ...+..|+.. .. ....++.+|++||.++ .+++.+.+||. ..++|++++.++..+
T Consensus 136 DE~d~L~~~--~-------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~ 206 (365)
T TIGR02928 136 DEIDYLVGD--D-------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRD 206 (365)
T ss_pred CchhhhccC--C-------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHH
Confidence 999999721 1 1244555544 22 2236789999999886 58888888885 679999999999999
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHH---HHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSK---IAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~---la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|++..+..- . ....++ +..++. ++..+.|. .+.+-++|..|...+.......++.+++.+|+..
T Consensus 207 il~~r~~~~-~----------~~~~~~-~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 207 ILENRAEKA-F----------YDGVLD-DGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred HHHHHHHhh-c----------cCCCCC-hhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999988621 0 001122 222233 34443432 3333345543333233344457999999998876
Q ss_pred H
Q psy4165 202 S 202 (242)
Q Consensus 202 ~ 202 (242)
.
T Consensus 274 ~ 274 (365)
T TIGR02928 274 I 274 (365)
T ss_pred H
Confidence 6
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-08 Score=90.17 Aligned_cols=181 Identities=17% Similarity=0.106 Sum_probs=113.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccc------------------cc-hHHHHHHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPM------------------GS-SGVTAIHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~------------------~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
+++.+++++ ++.++++++....+. .| .....+..+++......++.||+|||+|.+
T Consensus 71 l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 71 TVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 567777765 678899988654220 01 123344444455444444799999999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCcc---cccHHHhcccc-cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 58 LRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQ---QFDWAVNDRLD-EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 58 ~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~---~ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.... . ...+..|+..++.. ..++.+|+++|.++ .+++.+.+||. ..|+|++++.++..+|++..+..
T Consensus 151 ~~~~-~-------~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 151 FEKE-G-------NDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred hccC-C-------chHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 7221 1 12455666555432 33788888888763 57788887774 57899999999999999998853
Q ss_pred cccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHH---HHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA---KLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~---~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
. .....++ +..++.+++.+.+.+ +|++ .+|..|...+.......++.+++.+|+....
T Consensus 223 -~----------~~~~~~~-~~~l~~i~~~~~~~~-Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 223 -G----------FYPGVVD-DEVLDLIADLTAREH-GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred -h----------cccCCCC-HhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 1 1011122 334567777775432 3555 4454332223333445799999999988763
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-09 Score=96.33 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=112.0
Q ss_pred ChHHHHHHhcCC------------------------cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEec
Q psy4165 1 MFAKKLAHHSGM------------------------DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~------------------------~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDe 53 (242)
++|+++|+.++| .++.+++++- .+...++++...+... ++..|++|||
T Consensus 52 TlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~VddIReli~~~~y~P~~gk~KV~IIDE 126 (702)
T PRK14960 52 TIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TKVEDTRELLDNVPYAPTQGRFKVYLIDE 126 (702)
T ss_pred HHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CCHHHHHHHHHHHhhhhhcCCcEEEEEec
Confidence 378999999887 3444444321 1234566666655321 2357999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+|.+-. ...+.||+.|++.++.+.+|++|+.+..+++.+++|+. .++|.+++.++-...++..+.+.
T Consensus 127 Vh~LS~------------~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 127 VHMLST------------HSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred hHhcCH------------HHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHc
Confidence 999832 35678888888777888899999999999999999995 99999999999999999988763
Q ss_pred ccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 134 VLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 134 ~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+ +..+ ...+..|++.+.| +.+++-+++. ++.++ ..+.++.+++..
T Consensus 194 g----------I~id----~eAL~~IA~~S~G-dLRdALnLLD--QaIay--g~g~IT~edV~~ 238 (702)
T PRK14960 194 Q----------IAAD----QDAIWQIAESAQG-SLRDALSLTD--QAIAY--GQGAVHHQDVKE 238 (702)
T ss_pred C----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cCCCcCHHHHHH
Confidence 2 2222 3445788888765 7777777765 33333 345666666644
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-09 Score=97.08 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... .+..|+||||+|.|. ....+.||+.|++....+.+|++||.+..|.+.|++
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 34567777665422 125799999999993 234688899998888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .+.|..++.++..+.|+..+.+. ++..+ +..+..|++.++| +.+|.-+++.
T Consensus 169 RCq-~f~Fk~Ls~eeIv~~L~~Il~~E----------gI~id----~eAL~lIA~~A~G-smRdALsLLd 222 (830)
T PRK07003 169 RCL-QFNLKQMPAGHIVSHLERILGEE----------RIAFE----PQALRLLARAAQG-SMRDALSLTD 222 (830)
T ss_pred heE-EEecCCcCHHHHHHHHHHHHHHc----------CCCCC----HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 995 99999999999999999988752 22222 3445778888875 4566666655
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=95.39 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=114.5
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chHH-HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGV-TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e-~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+|+++ +..++++++.++.+.+ +... .....+.+..+ . +.+|+|||+|.+.+++. ....+
T Consensus 164 L~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~dlLiiDDi~~l~~~~~-------~~~~l 233 (450)
T PRK00149 164 LLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--S-VDVLLIDDIQFLAGKER-------TQEEF 233 (450)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--c-CCEEEEehhhhhcCCHH-------HHHHH
Confidence 788999886 6678889888775432 1111 11222222222 2 68999999999864321 22223
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+-. .++.++|+++..|.. +++.+.+||. ..+++++|+.++|..|++..+...+ +.++
T Consensus 234 ~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~----------~~l~- 301 (450)
T PRK00149 234 FHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG----------IDLP- 301 (450)
T ss_pred HHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC----------CCCC-
Confidence 333333322 234466666666655 6789999996 5899999999999999999987522 1122
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||..+. =+.++|..+++...+.+.. ....+|.+.+.+++.....
T Consensus 302 ---~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~-~~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 302 ---DEVLEFIAKNIT-SNVRELEGALNRLIAYASL-TGKPITLELAKEALKDLLA 351 (450)
T ss_pred ---HHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhhc
Confidence 344588999886 4788888888855443332 2346899999999887653
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-09 Score=96.64 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+.. ..+..|+||||+|.+. ....|.||+.|++..+++++|++||.++.|.+.|++
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 3456666655442 2225799999999993 245688999999888899999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .+.|+.++.++..+.|+..+.+.+ +.. + +..++.|++.++ -++++..+++.
T Consensus 174 RCq-~f~f~~ls~eei~~~L~~Il~~Eg----------i~~---d-~eAL~~IA~~A~-Gs~RdALsLLd 227 (700)
T PRK12323 174 RCL-QFNLKQMPPGHIVSHLDAILGEEG----------IAH---E-VNALRLLAQAAQ-GSMRDALSLTD 227 (700)
T ss_pred HHH-hcccCCCChHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 994 899999999999999998886521 111 1 233467787776 47777777775
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=88.96 Aligned_cols=137 Identities=23% Similarity=0.295 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++++.+... ++.-||+|||+|.+.. ...+.||..+++.+..+++|++|+.++.+.+++++
T Consensus 99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 34577888877643 1246999999998831 24577888887777788888889999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|++|+.++..++++.++++.+. .. + +..+..++..+.| +++.+.+.+. +...+.
T Consensus 167 r~~-~~~~~~~~~~~l~~~l~~~~~~~g~----------~i---~-~~a~~~l~~~~~g-~~~~a~~~le--kl~~~~-- 226 (355)
T TIGR02397 167 RCQ-RFDFKRIPLEDIVERLKKILDKEGI----------KI---E-DEALELIARAADG-SLRDALSLLD--QLISFG-- 226 (355)
T ss_pred hee-EEEcCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-ChHHHHHHHH--HHHhhc--
Confidence 995 8999999999999999999876322 12 2 3344677877764 6666666664 333332
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++.+.
T Consensus 227 ~~~it~~~v~~~ 238 (355)
T TIGR02397 227 NGNITYEDVNEL 238 (355)
T ss_pred CCCCCHHHHHHH
Confidence 234676666544
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=94.23 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=111.3
Q ss_pred hHHHHHHhcCCc------------------------EEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecc
Q psy4165 2 FAKKLAHHSGMD------------------------YAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~~~~------------------------~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDei 54 (242)
+|+++|+.++|. ++.+++++ ..+...++++.+.+... ++..|++|||+
T Consensus 54 ~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~ 128 (509)
T PRK14958 54 ISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEV 128 (509)
T ss_pred HHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEECh
Confidence 789999988873 45554432 12234466666555421 12469999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
|.+. ....+.||+.|++.+..+.+|++|+.+..+.+.+++|+. .++|.+++.++-...++..+.+.+
T Consensus 129 ~~ls------------~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 129 HMLS------------GHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred HhcC------------HHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcC
Confidence 9994 234688999998888888899999999999999999984 889999999998888888887632
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+..+ +..+..+++.+.| +.+++.+++. ++.++ ..+.++.+++...
T Consensus 196 ----------i~~~----~~al~~ia~~s~G-slR~al~lLd--q~ia~--~~~~It~~~V~~~ 240 (509)
T PRK14958 196 ----------VEFE----NAALDLLARAANG-SVRDALSLLD--QSIAY--GNGKVLIADVKTM 240 (509)
T ss_pred ----------CCCC----HHHHHHHHHHcCC-cHHHHHHHHH--HHHhc--CCCCcCHHHHHHH
Confidence 2222 3345778888764 7788888876 33344 2455666655543
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-09 Score=95.67 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=73.7
Q ss_pred eEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC
Q psy4165 88 FMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS 167 (242)
Q Consensus 88 v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s 167 (242)
.++++|||.|+.|+|++++|+. .|.|++++.+++.+|++..+++.+. ..+ +..++.++..+ ++
T Consensus 235 rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i----------~is----~~al~~I~~y~--~n 297 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGI----------NLE----KHALELIVKYA--SN 297 (531)
T ss_pred EEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCC----------CcC----HHHHHHHHHhh--hh
Confidence 4555677899999999999996 8899999999999999999987432 122 23346677665 48
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 168 GREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 168 ~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++++.++++.|...+....+..++.++++..++..
T Consensus 298 ~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 298 GREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 99999999855444444445589999999998644
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=95.71 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC---cccccHHH
Q psy4165 29 GVTAIHKVFDWASS-SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT---PQQFDWAV 104 (242)
Q Consensus 29 ~e~~l~~~f~~A~~-~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~---~~~ld~al 104 (242)
+...+..+|..... ....+||+|||||.|... ...++-.|+.+......+++|||++|. +..|+|.+
T Consensus 852 S~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRL 922 (1164)
T PTZ00112 852 SFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRC 922 (1164)
T ss_pred HHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhh
Confidence 34567777776532 222579999999999753 123444555444445667999999986 56778888
Q ss_pred hccccc-EEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 105 NDRLDE-MVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 105 ~~Rfd~-~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
.+||.. .|.|++++.+++.+||+.-+.... ..++ +..++.+|+... ...+|++.++.-.+.++.
T Consensus 923 RSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-------------gVLd-DdAIELIArkVA-q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 923 RSRLAFGRLVFSPYKGDEIEKIIKERLENCK-------------EIID-HTAIQLCARKVA-NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hhccccccccCCCCCHHHHHHHHHHHHHhCC-------------CCCC-HHHHHHHHHhhh-hcCCHHHHHHHHHHHHHh
Confidence 888764 488999999999999999887420 1133 444566777554 445799998876666655
Q ss_pred hhcCCCccHHHHHHHHHHHH
Q psy4165 184 ASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 184 ~~~~~~~~~~~~~~a~~~~~ 203 (242)
..+...++.+++.+|+....
T Consensus 988 ikegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH
Confidence 55556899999999986653
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-08 Score=91.73 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++.+.+... ++.-|++|||+|.+. ...++.||+.+++.+..+++|++|+.++.|++.+
T Consensus 99 ~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 99 NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 3455677777776632 235799999999883 2356788988988888888888888999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
++|+. .++|++|+.++-...++..+.+.+ +..+ +..+..++..+.| +.++..+++. +...+.
T Consensus 167 ~SRc~-~~~f~~~~~~ei~~~L~~i~~~eg----------i~i~----~~al~~ia~~s~G-~~R~al~~Ld--q~~~~~ 228 (559)
T PRK05563 167 LSRCQ-RFDFKRISVEDIVERLKYILDKEG----------IEYE----DEALRLIARAAEG-GMRDALSILD--QAISFG 228 (559)
T ss_pred HhHhe-EEecCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc
Confidence 99996 789999999999999999887632 2222 3345778888775 7777777776 333332
Q ss_pred hcCCCccHHHHH
Q psy4165 185 SEDGVLTEAMVM 196 (242)
Q Consensus 185 ~~~~~~~~~~~~ 196 (242)
.+.++.+++.
T Consensus 229 --~~~It~~~V~ 238 (559)
T PRK05563 229 --DGKVTYEDAL 238 (559)
T ss_pred --cCCCCHHHHH
Confidence 3456655443
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=82.42 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=101.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|+|+++ +....+++.... .....++++..+ +..+|+|||++.+.+.+ .....+..++
T Consensus 55 L~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~~~~~~~---~~dlLilDDi~~~~~~~-------~~~~~l~~l~ 117 (229)
T PRK06893 55 LLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPAVLENLE---QQDLVCLDDLQAVIGNE-------EWELAIFDLF 117 (229)
T ss_pred HHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHHHHhhcc---cCCEEEEeChhhhcCCh-------HHHHHHHHHH
Confidence 678888875 233344443221 111122333332 26799999999986432 1223345555
Q ss_pred HHhccCCCCeEEEEecCCccccc---HHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQFD---WAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~ld---~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+.+...+..++++.++..|..++ +.+.+|+ ...+++++|+.++|.+|++...... ++.++ +
T Consensus 118 n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~----------~l~l~----~ 183 (229)
T PRK06893 118 NRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR----------GIELS----D 183 (229)
T ss_pred HHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 55533334455666777788776 7888765 5799999999999999999888642 22222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++.|+++.+ =+.+.+..++.....+.. .....+|.+.+++.+
T Consensus 184 ~v~~~L~~~~~-~d~r~l~~~l~~l~~~~~-~~~~~it~~~v~~~L 227 (229)
T PRK06893 184 EVANFLLKRLD-RDMHTLFDALDLLDKASL-QAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHh
Confidence 34478998876 467777777765433333 223468888877665
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=92.68 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=87.6
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|+||||+|.+. ....+.||+.|++.++.+.+|++|+.+..|.+.|++|+
T Consensus 103 diR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 103 DTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 45555554432 2225799999999983 34678999999988888999999999999999999998
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
..++|++++.++-...|+..+.+.+ +..+ ...+..|+..+.| +.++.-+++.
T Consensus 171 -~~~~f~~Ls~~ei~~~L~~il~~e~----------i~~e----~~aL~~Ia~~s~G-s~R~Al~lld 222 (647)
T PRK07994 171 -LQFHLKALDVEQIRQQLEHILQAEQ----------IPFE----PRALQLLARAADG-SMRDALSLTD 222 (647)
T ss_pred -eEeeCCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5999999999999999998886522 1111 3345678877664 6667777765
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=92.47 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... .+--|++|||+|.+. ....+.||+.+++.++.+.+|++|+.+..+.+.+++
T Consensus 106 Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 106 VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred HHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 34567777665522 113599999999983 234678999998888888888888899999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..++|..++.++..+.++..+.+.+. ..+ ...+..|++.+.| +.+++.+++. ++.++.
T Consensus 174 Rc-~~~~f~~Ls~eei~~~L~~i~~~egi----------~ie----~~AL~~La~~s~G-slR~al~lLd--q~ia~~-- 233 (618)
T PRK14951 174 RC-LQFNLRPMAPETVLEHLTQVLAAENV----------PAE----PQALRLLARAARG-SMRDALSLTD--QAIAFG-- 233 (618)
T ss_pred hc-eeeecCCCCHHHHHHHHHHHHHHcCC----------CCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--
Confidence 98 49999999999999999988875322 221 3345788888775 7777777775 333332
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++.+.
T Consensus 234 ~~~It~~~V~~~ 245 (618)
T PRK14951 234 SGQLQEAAVRQM 245 (618)
T ss_pred CCCcCHHHHHHH
Confidence 445666555443
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=88.04 Aligned_cols=175 Identities=17% Similarity=0.251 Sum_probs=118.9
Q ss_pred ChHHHHHHhcCCc---EEEEecCCcccccchHHHHHHHHHHHHHhCC----CcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMD---YAIMTGGDVAPMGSSGVTAIHKVFDWASSSR----KGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~---~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~----~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
.|||.|++...-+ |+.++... ...+.++.+|+.++... +..|||||||+.|.. ..
T Consensus 177 tlArlia~tsk~~SyrfvelSAt~------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------sQ 238 (554)
T KOG2028|consen 177 TLARLIASTSKKHSYRFVELSATN------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------SQ 238 (554)
T ss_pred HHHHHHHhhcCCCceEEEEEeccc------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------hh
Confidence 3789999887776 77777655 34578999999998632 479999999999943 22
Q ss_pred HHHHHHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC--
Q psy4165 74 LNAFLYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-- 149 (242)
Q Consensus 74 l~~lL~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~-- 149 (242)
...||-.++ .+.|++||+| |....|..+|++|+- ++.+...+.+.-..||.+-+..++..- ..--.++...
T Consensus 239 QD~fLP~VE--~G~I~lIGATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dse--r~~~~l~n~s~~ 313 (554)
T KOG2028|consen 239 QDTFLPHVE--NGDITLIGATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSE--RPTDPLPNSSMF 313 (554)
T ss_pred hhcccceec--cCceEEEecccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhcccc--ccCCCCCCcchh
Confidence 345665553 6679999977 888899999999985 777888888999999988665332111 0001222222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH--HhhhcCC-----CccHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS--AYASEDG-----VLTEAMVMSKVEDSI 203 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~--~~~~~~~-----~~~~~~~~~a~~~~~ 203 (242)
++ +..++.++..++| |-+..++..+.. ..+.+.+ .++.+|+.+.+++.-
T Consensus 314 ve-~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 314 VE-DSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred hh-HHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 22 4456788888775 444444433333 3333333 899999999887654
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=98.83 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=103.1
Q ss_pred hHHHHHHhcCCcEEEEecCCccc----------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP----------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~----------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+++.+|+.++.+++.++.+.... +.|.....+.+.+..+...+ .||||||+|.+...... + .
T Consensus 365 l~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~--~villDEidk~~~~~~g-~----~- 436 (784)
T PRK10787 365 LGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN--PLFLLDEIDKMSSDMRG-D----P- 436 (784)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC--CEEEEEChhhcccccCC-C----H-
Confidence 78999999999999988665432 22555556666676666554 48999999999754221 1 1
Q ss_pred HHHHHHHHHhcc---------------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccc
Q psy4165 72 ATLNAFLYRTGE---------------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQ 136 (242)
Q Consensus 72 ~~l~~lL~~l~~---------------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~ 136 (242)
...||.-++. .-+++++|+|||.. .|+++|++||. .|+|+.++.++..+|.+.|+-.....
T Consensus 437 --~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 437 --ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred --HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 2334433331 22679999999987 59999999996 89999999999999999999421000
Q ss_pred hhhhcccccccCCCCh-hHhHHHHHHh-CCCCCHHHHHHHHHH
Q psy4165 137 PAAQGKRRLKVAPFDY-TSLCSKIAHV-TEGLSGREIAKLGVA 177 (242)
Q Consensus 137 ~~~~~~~~~~~~~~d~-~~~l~~la~~-t~g~s~adi~~lv~~ 177 (242)
..+.....+.+ +..+..+++. +..+-.+.|+.++..
T Consensus 513 -----~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~ 550 (784)
T PRK10787 513 -----RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISK 550 (784)
T ss_pred -----HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHH
Confidence 00111112222 2233455543 344666777777653
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=91.76 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=112.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
|++|||+++ |..++++++.++...+ ..........|..-- ..+.+|+||||+.+.++.. ....+-
T Consensus 330 LL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y--~~~DLLlIDDIq~l~gke~-------tqeeLF 400 (617)
T PRK14086 330 LLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY--REMDILLVDDIQFLEDKES-------TQEEFF 400 (617)
T ss_pred HHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh--hcCCEEEEehhccccCCHH-------HHHHHH
Confidence 788999876 5688999988876543 221111122233222 2268999999999965321 222333
Q ss_pred HHHHHhccCCCCeEEEEecCCc----ccccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP----QQFDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~----~~ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.+++.+.+.+ +-+|| |+|.+ ..+++.|.+|| ...+++..|+.+.|..||+..+...+ +.++
T Consensus 401 ~l~N~l~e~g-k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~----------l~l~- 467 (617)
T PRK14086 401 HTFNTLHNAN-KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ----------LNAP- 467 (617)
T ss_pred HHHHHHHhcC-CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC----------CCCC-
Confidence 4444443222 33444 55543 35788899998 56679999999999999999987632 2222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
...++.|+.+.. =+.++|..+++...+.+.. ....+|.+..+..+.....
T Consensus 468 ---~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~-~~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 468 ---PEVLEFIASRIS-RNIRELEGALIRVTAFASL-NRQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred ---HHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhhc
Confidence 334588999986 4788898888754333322 3346888888877766543
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-08 Score=84.39 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=81.6
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
+|+++|++.+.+++.+++++ .. .......+............+.||+|||+|.+.. ...... |...+
T Consensus 59 la~~l~~~~~~~~~~i~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~---L~~~l 125 (316)
T PHA02544 59 VAKALCNEVGAEVLFVNGSD-CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRH---LRSFM 125 (316)
T ss_pred HHHHHHHHhCccceEeccCc-cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHH---HHHHH
Confidence 78999999999999999887 22 2111122322222111112379999999998731 112222 33335
Q ss_pred ccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 82 GEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 82 ~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
+....++.+|++||.+..+++++++||. .+.|+.|+.+++..+++.++..
T Consensus 126 e~~~~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 126 EAYSKNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred HhcCCCceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 5556677899999999999999999996 8899999999999998877654
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=94.68 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccE
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~ 111 (242)
.+.+.+...-...+..||||||+|.+. ....+.||..|++....+++|++||.+..+.+.|++|+. .
T Consensus 106 ~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq-~ 172 (624)
T PRK14959 106 RLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ-H 172 (624)
T ss_pred HHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhh-c
Confidence 344444433322335899999999983 234688898898777788999999999999999999986 7
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
|+|++++.++-..+|+..+.+.+.. ++ ...++.+++.+. +|++.+++.....+ ....+.++
T Consensus 173 i~F~pLs~~eL~~~L~~il~~egi~-------------id-~eal~lIA~~s~----GdlR~Al~lLeqll-~~g~~~It 233 (624)
T PRK14959 173 FTFTRLSEAGLEAHLTKVLGREGVD-------------YD-PAAVRLIARRAA----GSVRDSMSLLGQVL-ALGESRLT 233 (624)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCC-------------CC-HHHHHHHHHHcC----CCHHHHHHHHHHHH-HhcCCCcC
Confidence 8999999999999999887653211 22 333466776654 44444444333222 23444667
Q ss_pred HHHHHH
Q psy4165 192 EAMVMS 197 (242)
Q Consensus 192 ~~~~~~ 197 (242)
.+++..
T Consensus 234 ~d~V~~ 239 (624)
T PRK14959 234 IDGARG 239 (624)
T ss_pred HHHHHH
Confidence 666543
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-08 Score=82.55 Aligned_cols=174 Identities=19% Similarity=0.243 Sum_probs=124.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||..||+|+|+.+-..+++.+ +....+-.++...+. .-|+|||||+.+.+.- .+-....+..|--.
T Consensus 67 TLA~IIA~Emgvn~k~tsGp~l-----eK~gDlaaiLt~Le~---~DVLFIDEIHrl~~~v-----EE~LYpaMEDf~lD 133 (332)
T COG2255 67 TLAHIIANELGVNLKITSGPAL-----EKPGDLAAILTNLEE---GDVLFIDEIHRLSPAV-----EEVLYPAMEDFRLD 133 (332)
T ss_pred HHHHHHHHHhcCCeEecccccc-----cChhhHHHHHhcCCc---CCeEEEehhhhcChhH-----HHHhhhhhhheeEE
Confidence 4899999999999999999887 445567777766553 5899999999995421 01111122222111
Q ss_pred h--cc-C--------CCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 81 T--GE-Q--------SDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 81 l--~~-~--------~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
+ ++ . -.+..+||+|.+...|...|+.||.....+...+.++-.+|+...-..++.. +++
T Consensus 134 I~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~----------i~~ 203 (332)
T COG2255 134 IIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE----------IDE 203 (332)
T ss_pred EEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC----------CCh
Confidence 1 11 1 1358899999999999999999999999999999999999999998765333 222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
....++|+++.| ||+=--+|+++..--+.-.+.+.++.+...+++...
T Consensus 204 ----~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 204 ----EAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred ----HHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 334789999986 677666777755544555566788887777776544
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-08 Score=91.92 Aligned_cols=138 Identities=21% Similarity=0.201 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 29 GVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
+...+++++..+... .+..||||||+|.+. ...++.||+.|++..+.+.+|++|+.+..+.+.++
T Consensus 100 gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 100 GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred CHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 345677777765422 225799999999872 23567899999877788889999999999999999
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
+|+. .+.|+.++.++-...|+..+.+.+ +.. + ...+..|++.+. -+.+++.+++. ++..+.
T Consensus 168 SRC~-~f~f~~Ls~eeI~~~L~~Il~kEg----------i~i---d-~eAL~~Ia~~A~-GslRdAlnLLD--qaia~g- 228 (709)
T PRK08691 168 SRCL-QFVLRNMTAQQVADHLAHVLDSEK----------IAY---E-PPALQLLGRAAA-GSMRDALSLLD--QAIALG- 228 (709)
T ss_pred HHHh-hhhcCCCCHHHHHHHHHHHHHHcC----------CCc---C-HHHHHHHHHHhC-CCHHHHHHHHH--HHHHhc-
Confidence 9994 889999999999999999887632 222 2 334578888875 57778877776 333332
Q ss_pred cCCCccHHHHHHH
Q psy4165 186 EDGVLTEAMVMSK 198 (242)
Q Consensus 186 ~~~~~~~~~~~~a 198 (242)
.+.|+.+++...
T Consensus 229 -~g~It~e~V~~l 240 (709)
T PRK08691 229 -SGKVAENDVRQM 240 (709)
T ss_pred -CCCcCHHHHHHH
Confidence 445666655544
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-08 Score=94.06 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=79.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
..|+||||+|.|. ....+.||+.|++....+++|++|+.++.|.+.|++|+. .++|..++.++..++
T Consensus 121 ~KV~IIDEad~lt------------~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~ 187 (824)
T PRK07764 121 YKIFIIDEAHMVT------------PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGY 187 (824)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHH
Confidence 5799999999993 245688999999888889999999999999999999985 899999999999999
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+..+.+.++ .. + ...+..|++.+.| +.+++.+++.
T Consensus 188 L~~il~~EGv----------~i---d-~eal~lLa~~sgG-dlR~Al~eLE 223 (824)
T PRK07764 188 LERICAQEGV----------PV---E-PGVLPLVIRAGGG-SVRDSLSVLD 223 (824)
T ss_pred HHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9988875322 11 1 2234566767654 6666666665
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-08 Score=85.61 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=101.8
Q ss_pred hHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHH---HHHHHh---CCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKV---FDWASS---SRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~---f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|+++.+ .++.+++++..+ ...++.. |..... ..++.||+|||+|.+..
T Consensus 50 la~~la~~l~~~~~~~~~~eln~sd~~~-----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------- 113 (319)
T PLN03025 50 SILALAHELLGPNYKEAVLELNASDDRG-----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------- 113 (319)
T ss_pred HHHHHHHHHhcccCccceeeeccccccc-----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------
Confidence 78999998733 366666665422 1123332 222211 11268999999999842
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
...+.|+..|+.++....+|.+||.+..+.++|++|+. .++|++|+.++....++..+.+.+ +..+
T Consensus 114 -~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~eg----------i~i~-- 179 (319)
T PLN03025 114 -GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEK----------VPYV-- 179 (319)
T ss_pred -HHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcC----------CCCC--
Confidence 12344555566555666778889999999999999985 899999999999999999887632 2222
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+..++.++..+ ++|++.+++..+.... ..+.++.+++.+
T Consensus 180 --~~~l~~i~~~~----~gDlR~aln~Lq~~~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 180 --PEGLEAIIFTA----DGDMRQALNNLQATHS--GFGFVNQENVFK 218 (319)
T ss_pred --HHHHHHHHHHc----CCCHHHHHHHHHHHHh--cCCCCCHHHHHH
Confidence 33346777764 4577777775554332 234566655543
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=86.46 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=106.4
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFM 89 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~ 89 (242)
.++.+++++- .+...++++.+.+... ++.-|++|||+|.+. ...++.||+.|++.+..+.
T Consensus 86 Dv~eidaas~-----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 86 DVIEIDAASN-----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred CEEEEecccC-----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHhCCCCCeE
Confidence 3455555421 2345677777776532 235799999999883 2356889999988888889
Q ss_pred EEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 90 LVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 90 vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
+|++|+.++.|.+.+++|+. .++|.+++.++....++..+.+.+ +..+ +..++.|++.++| +.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Eg----------i~i~----~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKEN----------IEHD----EESLKLIAENSSG-SMR 212 (491)
T ss_pred EEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-CHH
Confidence 99999999999999999995 799999999999999999887632 2222 3445788888864 778
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
++.+++. ++..+.. +.+|.+++.+.
T Consensus 213 ~alslLd--qli~y~~--~~It~e~V~~l 237 (491)
T PRK14964 213 NALFLLE--QAAIYSN--NKISEKSVRDL 237 (491)
T ss_pred HHHHHHH--HHHHhcC--CCCCHHHHHHH
Confidence 8877776 3334432 35677666553
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=91.88 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+... ++..|+||||+|.+- ...++.||+.|++.++.+.+|++|+.+..|.+.|++|
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 3455555544321 224799999999992 4567899999998888889999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+. .++|++++.++-...|+..+...+ +. ++ +..+..|++.+.| +++++-+++.
T Consensus 170 Cq-~f~fkpLs~eEI~~~L~~il~~Eg----------I~---~e-deAL~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 170 CL-QFNLKSLTQDEIGTQLNHILTQEQ----------LP---FE-AEALTLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred he-EEeCCCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 84 899999999999999998886521 11 11 3345677877664 6667777775
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-08 Score=90.44 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.++.. ++.-|++|||+|.+. ....+.||+.|++..+.+++|++|+.++.|.+.|++
T Consensus 101 v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S 168 (576)
T PRK14965 101 VDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168 (576)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH
Confidence 45677777766532 123699999999883 235688999998888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|..++.++-...+...+.+.+. ..+ ...+..+++.+.| +.+++.+++. +...+..
T Consensus 169 Rc~-~~~f~~l~~~~i~~~L~~i~~~egi----------~i~----~~al~~la~~a~G-~lr~al~~Ld--qliay~g- 229 (576)
T PRK14965 169 RCQ-RFDFRRIPLQKIVDRLRYIADQEGI----------SIS----DAALALVARKGDG-SMRDSLSTLD--QVLAFCG- 229 (576)
T ss_pred hhh-hhhcCCCCHHHHHHHHHHHHHHhCC----------CCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc-
Confidence 986 8999999999998888888876322 222 3345778888764 6666666665 3333332
Q ss_pred CCCccHHHHH
Q psy4165 187 DGVLTEAMVM 196 (242)
Q Consensus 187 ~~~~~~~~~~ 196 (242)
+.++.+++.
T Consensus 230 -~~It~edV~ 238 (576)
T PRK14965 230 -DAVGDDDVA 238 (576)
T ss_pred -CCCCHHHHH
Confidence 235555543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.8e-08 Score=88.36 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+.. ..++.||+|||+|.+. ...++.||..+++.+..+++|++|+.+..+++.+.+|
T Consensus 99 d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 99 EDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred HHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 345555444432 2236899999999762 2456788888987777888888999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++-...++..+.+.+. .. + ...+..+++.+.| +.+++.+++. ..... .
T Consensus 167 c~-~~~f~~ls~~el~~~L~~i~~~egi----------~i---~-~~Al~~ia~~s~G-dlR~aln~Le---kl~~~--~ 225 (504)
T PRK14963 167 TQ-HFRFRRLTEEEIAGKLRRLLEAEGR----------EA---E-PEALQLVARLADG-AMRDAESLLE---RLLAL--G 225 (504)
T ss_pred eE-EEEecCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH---HHHhc--C
Confidence 86 8999999999999999999876322 11 1 3344677777653 4444444443 33222 3
Q ss_pred CCccHHHHHHH
Q psy4165 188 GVLTEAMVMSK 198 (242)
Q Consensus 188 ~~~~~~~~~~a 198 (242)
+.+|.+++.+.
T Consensus 226 ~~It~~~V~~~ 236 (504)
T PRK14963 226 TPVTRKQVEEA 236 (504)
T ss_pred CCCCHHHHHHH
Confidence 46777766554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-08 Score=94.30 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=106.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
.+|+++|+.++.+|+.+++... +.+.+++.+..+.. ..++.||||||+|.+.. .....
T Consensus 67 TLA~aIA~~~~~~f~~lna~~~------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~qQda 128 (725)
T PRK13341 67 TLARIIANHTRAHFSSLNAVLA------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQQDA 128 (725)
T ss_pred HHHHHHHHHhcCcceeehhhhh------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HHHHH
Confidence 3799999999999998887532 22334455544421 22368999999999842 12234
Q ss_pred HHHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 77 FLYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
|+..++ .+.+++|++| |....+++++++|+. .++|++++.+++..|++.++....... +..++ .++ +.
T Consensus 129 LL~~lE--~g~IiLI~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~---g~~~v---~I~-de 198 (725)
T PRK13341 129 LLPWVE--NGTITLIGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGY---GDRKV---DLE-PE 198 (725)
T ss_pred HHHHhc--CceEEEEEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhc---CCccc---CCC-HH
Confidence 555554 3557777765 445679999999874 799999999999999999987421100 00011 122 33
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh---cCC--CccHHHHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYAS---EDG--VLTEAMVMSKVEDSI 203 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~---~~~--~~~~~~~~~a~~~~~ 203 (242)
.++.|++.+ ++|++.+.+..+.+.... ..+ .++.+.+.+.+.+..
T Consensus 199 aL~~La~~s----~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 199 AEKHLVDVA----NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 456777765 445665555444433321 112 377777777776643
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=87.30 Aligned_cols=177 Identities=11% Similarity=0.133 Sum_probs=110.9
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchH--HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSG--VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~--e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
|++|+|+++ +..++++++.++...+..+ ...+..+.+.-+ .. +.+|+|||++.+.+... ....+
T Consensus 146 Ll~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~-~dvLlIDDi~~l~~~~~-------~q~el 216 (440)
T PRK14088 146 LLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KK-VDVLLIDDVQFLIGKTG-------VQTEL 216 (440)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hc-CCEEEEechhhhcCcHH-------HHHHH
Confidence 688888875 5678888887765432111 112223222222 23 78999999999864321 12222
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+.. .++.+||++.+.|.. +++.+.+|| ...+.+++|+.+.|..|++..+... ++.++
T Consensus 217 f~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~----------~~~l~- 284 (440)
T PRK14088 217 FHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE----------HGELP- 284 (440)
T ss_pred HHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc----------CCCCC-
Confidence 233333322 234466666667665 456677888 4678899999999999999988642 22222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.||+.+.| +.++|..+++...+.+.. ....+|.+...+++.....
T Consensus 285 ---~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~-~~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 285 ---EEVLNFVAENVDD-NLRRLRGAIIKLLVYKET-TGEEVDLKEAILLLKDFIK 334 (440)
T ss_pred ---HHHHHHHHhcccc-CHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhc
Confidence 3345889998874 788888888744333332 3346888888888877643
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=82.86 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=102.2
Q ss_pred hHHHHHHhcC-----CcEEEEecCCccccc--------------ch-------HHHHHHHHHHHHHhC----CCcEEEEE
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMG--------------SS-------GVTAIHKVFDWASSS----RKGLVLFI 51 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~--------------g~-------~e~~l~~~f~~A~~~----~~p~Il~i 51 (242)
+|+++|+++. .+++.++++++.... +. ....++.+....... .++.+|+|
T Consensus 52 la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlil 131 (337)
T PRK12402 52 AVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILL 131 (337)
T ss_pred HHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Confidence 7888888874 356788876653210 11 122344443333222 22469999
Q ss_pred ecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 52 DEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 52 DeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
||+|.+.. .. .+.|+..++.......+|.+|+.+..+.+.+.+|+. .+++++|+.++...+++..+.
T Consensus 132 De~~~l~~---------~~---~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 132 DNAEALRE---------DA---QQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred eCcccCCH---------HH---HHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHH
Confidence 99998832 11 233444444334445566677777888889998984 899999999999999999887
Q ss_pred ccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 132 KFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+.+. . ++ +..+..++..+ ++|++.+++.+...+ ...+.+|.+++.+.+.
T Consensus 199 ~~~~----------~---~~-~~al~~l~~~~----~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 199 AEGV----------D---YD-DDGLELIAYYA----GGDLRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred HcCC----------C---CC-HHHHHHHHHHc----CCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 6322 2 22 33446777765 456666666444333 3344688887776543
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=86.80 Aligned_cols=178 Identities=10% Similarity=0.093 Sum_probs=106.6
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
|++|+++++ +..+++++...+...+ ......-...|..... .+.+|+|||++.+.++.. ....+-.+
T Consensus 157 Ll~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k~~-------~qeelf~l 227 (445)
T PRK12422 157 LMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGKGA-------TQEEFFHT 227 (445)
T ss_pred HHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCChh-------hHHHHHHH
Confidence 678888865 6788888876664322 1000000112333222 268999999999854321 12222233
Q ss_pred HHHhccCCCCeEEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 78 LYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
++.+.. .++.+++.+++.|. .+++.|.+||. ..+.+++|+.++|..|++......+ +.++
T Consensus 228 ~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~----------~~l~---- 292 (445)
T PRK12422 228 FNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS----------IRIE---- 292 (445)
T ss_pred HHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC----------CCCC----
Confidence 333312 23445555555554 46788899995 7999999999999999999887632 1121
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHH-HHhhh-cCCCccHHHHHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQA-SAYAS-EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~-~~~~~-~~~~~~~~~~~~a~~~~~~ 204 (242)
+..++.|+.... -+.+.|...+..... .+++. ....+|.+..++.+.....
T Consensus 293 ~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 293 ETALDFLIEALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 334467888766 356666666653321 13332 3347899999888877643
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=85.73 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=92.3
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|++|||+|.+. ....+.||..|++.++.+++|++|+.+..+.+.+++|+
T Consensus 103 ~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 103 ETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred HHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 45555554442 2235799999999983 23567899999888788888888888999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG 188 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~ 188 (242)
..++|.+++.++-...++..+.+.+. .. + ...+..++..+. -+.+++-+++. ++..+.. +
T Consensus 171 -~~~~f~~Ls~~eI~~~L~~il~~egi----------~~---e-~~Al~~Ia~~s~-GdlR~alnlLe--k~i~~~~--~ 230 (546)
T PRK14957 171 -IQLHLKHISQADIKDQLKIILAKENI----------NS---D-EQSLEYIAYHAK-GSLRDALSLLD--QAISFCG--G 230 (546)
T ss_pred -eeEEeCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcC-CCHHHHHHHHH--HHHHhcc--C
Confidence 49999999999999888888876322 11 1 334466777764 45556656654 2233322 4
Q ss_pred CccHHHHHH
Q psy4165 189 VLTEAMVMS 197 (242)
Q Consensus 189 ~~~~~~~~~ 197 (242)
.++.+++.+
T Consensus 231 ~It~~~V~~ 239 (546)
T PRK14957 231 ELKQAQIKQ 239 (546)
T ss_pred CCCHHHHHH
Confidence 566666554
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=88.28 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++..|++|||+|.+. ....+.||+.+++.++.+++|++|+.+..+.+.+++
T Consensus 101 vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 101 VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 44577777766532 124699999999883 235678999998888888999989889999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..++|++|+.++-...+...+.+.+ +.. + ...+..+++.+. -+.+++.+++. ++.++ .
T Consensus 169 Rc-~~~~f~~l~~~~i~~~L~~il~~eg----------i~~---~-~~al~~la~~s~-Gslr~al~lld--qai~~--~ 228 (527)
T PRK14969 169 RC-LQFNLKQMPPPLIVSHLQHILEQEN----------IPF---D-ATALQLLARAAA-GSMRDALSLLD--QAIAY--G 228 (527)
T ss_pred HH-HHHhcCCCCHHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHcC-CCHHHHHHHHH--HHHHh--c
Confidence 98 5899999999999988888886522 111 1 334467777765 46777777776 33333 3
Q ss_pred CCCccHHHHHHH
Q psy4165 187 DGVLTEAMVMSK 198 (242)
Q Consensus 187 ~~~~~~~~~~~a 198 (242)
.+.++.+++...
T Consensus 229 ~~~I~~~~v~~~ 240 (527)
T PRK14969 229 GGTVNESEVRAM 240 (527)
T ss_pred CCCcCHHHHHHH
Confidence 456666665554
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=87.84 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+...+... .+.-|++|||+|.+-. ...+.||..|++.+..+++|++|+.+..|.+.+++|
T Consensus 102 d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 102 DEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred HHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 4466666655532 1246999999998831 245788988988888889999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++....++..+.+.+. . ++ ...+..++..+.| +++++.+++. ....+..
T Consensus 170 cq-~ieF~~Ls~~eL~~~L~~il~kegi----------~---Is-~eal~~La~lS~G-dlR~AlnlLe--kL~~y~~-- 229 (605)
T PRK05896 170 CQ-RYNFKKLNNSELQELLKSIAKKEKI----------K---IE-DNAIDKIADLADG-SLRDGLSILD--QLSTFKN-- 229 (605)
T ss_pred hh-hcccCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-cHHHHHHHHH--HHHhhcC--
Confidence 97 8999999999999999988875321 1 12 3334677777764 6666666665 2233322
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+++.+
T Consensus 230 ~~It~e~V~e 239 (605)
T PRK05896 230 SEIDIEDINK 239 (605)
T ss_pred CCCCHHHHHH
Confidence 2266665554
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=90.46 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred hHHHHHHhcCCcEEEEecCCcc------c----ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVA------P----MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~------~----~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+||.||..+|..||.++.+-+. . |+|.-...+-+-+...+..+ -+++|||||.++. ...++..+..-
T Consensus 454 I~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~N--PliLiDEvDKlG~-g~qGDPasALL 530 (906)
T KOG2004|consen 454 IAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTEN--PLILIDEVDKLGS-GHQGDPASALL 530 (906)
T ss_pred HHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCC--ceEEeehhhhhCC-CCCCChHHHHH
Confidence 6899999999999999865443 1 44777788888888999887 5889999999982 12222122111
Q ss_pred HHH-----HHHHHH-hc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 72 ATL-----NAFLYR-TG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 72 ~~l-----~~lL~~-l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.++ ..|+.+ |+ -.-++|++|+|+|..+.||++|+.|.. .|+++-...++...|-+.||-.
T Consensus 531 ElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 531 ELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred HhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhh
Confidence 111 122222 12 123579999999999999999999997 8999999999999999999854
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-08 Score=86.88 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++++.+... ++..|+||||+|.+.. ...+.||+.|++.+.++++|.+|+.++.|.|.+++|
T Consensus 100 ~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 100 DEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh
Confidence 4577888777642 1246999999999942 234778888887777777777777799999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~ 173 (242)
+. .++|++|+.++..+.|..... . + ...+..++..+.|..+.-++.
T Consensus 168 c~-~i~f~~~~~~~i~~~L~~~~~---~---------------~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 168 CR-HVALRTPSVEAVAEVLVRRDG---V---------------D-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred Ce-EEECCCCCHHHHHHHHHHhcC---C---------------C-HHHHHHHHHHcCCCHHHHHHH
Confidence 95 999999999998777763211 1 1 223356888888877655443
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-07 Score=80.45 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=103.6
Q ss_pred hHHHHHHhcCCcEEEEecCCc----c--cc-cchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDV----A--PM-GSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l----~--~~-~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|+.++++.....+..+ . +. ...+...++.+++.+... +++.||+|||+|.+..
T Consensus 55 ~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------ 122 (367)
T PRK14970 55 CARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------ 122 (367)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------
Confidence 678888887653221111100 0 01 112345677878776532 2357999999998732
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
..++.|+..+++.+...++|++|+.+..+.+++.+|+. .+++++|+.++...++...+.+.+ +..+
T Consensus 123 ~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g----------~~i~--- 188 (367)
T PRK14970 123 AAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEG----------IKFE--- 188 (367)
T ss_pred HHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcC----------CCCC---
Confidence 23577888787666666777778888999999999986 789999999999999998887632 2222
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
...++.++..+.| +.+.+.+.+. ....++.+ . +|.+++...
T Consensus 189 -~~al~~l~~~~~g-dlr~~~~~le--kl~~y~~~-~-it~~~v~~~ 229 (367)
T PRK14970 189 -DDALHIIAQKADG-ALRDALSIFD--RVVTFCGK-N-ITRQAVTEN 229 (367)
T ss_pred -HHHHHHHHHhCCC-CHHHHHHHHH--HHHHhcCC-C-CCHHHHHHH
Confidence 3344777777653 5555555554 22333322 2 555555444
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-07 Score=75.95 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=103.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||+++++++ +.++++++++.+..+. ..++.... ++.+|+|||+|.+... ......+..++
T Consensus 54 la~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~---~~~lLvIDdi~~l~~~-------~~~~~~L~~~l 116 (226)
T TIGR03420 54 LLQAACAAAEERGKSAIYLPLAELAQAD-------PEVLEGLE---QADLVCLDDVEAIAGQ-------PEWQEALFHLY 116 (226)
T ss_pred HHHHHHHHHHhcCCcEEEEeHHHHHHhH-------HHHHhhcc---cCCEEEEeChhhhcCC-------hHHHHHHHHHH
Confidence 678888765 4678888887764321 23333322 2469999999998432 11123344455
Q ss_pred HHhccCCCCeEEEEecCCccccc---HHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQFD---WAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~ld---~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
..+...+ ..+|+.++..+..++ +.+.+|| ...+++|+|+.+++..+++.+..+.+ +.++ .
T Consensus 117 ~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~----------~~~~----~ 181 (226)
T TIGR03420 117 NRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG----------LQLP----D 181 (226)
T ss_pred HHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC----------CCCC----H
Confidence 4443222 334554444554443 7778787 47899999999999999998876422 1111 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..+..|+... +-+++++.+++..+..++.. ..+.++.+.+.+.+
T Consensus 182 ~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 182 EVADYLLRHG-SRDMGSLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 3457788864 47899999999866654444 33568877766554
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=86.31 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++.-|++|||+|.+. ....+.||..+++.+..+++|++|+.+..|.++|++
T Consensus 101 vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 101 VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 34566665554422 235799999999883 235678999998888888999999989999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|.+|+.++..+.++..+.+. ++..+ ...+..|++.+.| +.+++.+++. +...++
T Consensus 169 Rc~-~~~f~~l~~~el~~~L~~i~~~e----------gi~id----~eAl~lLa~~s~G-dlR~alslLd--klis~~-- 228 (563)
T PRK06647 169 RCQ-HFNFRLLSLEKIYNMLKKVCLED----------QIKYE----DEALKWIAYKSTG-SVRDAYTLFD--QVVSFS-- 228 (563)
T ss_pred hce-EEEecCCCHHHHHHHHHHHHHHc----------CCCCC----HHHHHHHHHHcCC-CHHHHHHHHH--HHHhhc--
Confidence 997 78999999999999999887652 22222 3344778888765 7777777776 333332
Q ss_pred CCCccHHHHHH
Q psy4165 187 DGVLTEAMVMS 197 (242)
Q Consensus 187 ~~~~~~~~~~~ 197 (242)
.+.++.+++..
T Consensus 229 ~~~It~e~V~~ 239 (563)
T PRK06647 229 DSDITLEQIRS 239 (563)
T ss_pred CCCCCHHHHHH
Confidence 24566665554
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-07 Score=83.22 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+.+.+... +++.|++|||+|.+. ....+.||..+++.+..+++|.+|+.++.+++++.+|
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 3455555555432 235799999999883 2345778888887777778888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|++|+.++....++..+.+.+.. . + ...+..++..+.| +.+++.+++. .+..+ ..
T Consensus 170 c~-~i~f~~ls~~el~~~L~~i~k~egi~----------i---d-~~al~~La~~s~G-~lr~al~~Ld--kl~~~--~~ 229 (486)
T PRK14953 170 CQ-RFIFSKPTKEQIKEYLKRICNEEKIE----------Y---E-EKALDLLAQASEG-GMRDAASLLD--QASTY--GE 229 (486)
T ss_pred ce-EEEcCCCCHHHHHHHHHHHHHHcCCC----------C---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 86 79999999999999999988763221 1 1 2334677777653 4556655554 22233 24
Q ss_pred CCccHHHHHHH
Q psy4165 188 GVLTEAMVMSK 198 (242)
Q Consensus 188 ~~~~~~~~~~a 198 (242)
+.+|.+++.+.
T Consensus 230 ~~It~~~V~~~ 240 (486)
T PRK14953 230 GKVTIKVVEEF 240 (486)
T ss_pred CCcCHHHHHHH
Confidence 56776666653
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-08 Score=86.84 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=103.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccch--HHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISE--SLR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~--~~~ 71 (242)
++|+++|..+++||+.++++.+.. +.|+. +..+..++..+ .... ++||||||||.+..++.+..... ...
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~-~gIi~iDEIdkl~~~~~~~~~~~d~s~~ 201 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQ-RGIVYIDEIDKIARKSENPSITRDVSGE 201 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcC-CcEEEEechhhhccccCCCCcCCCcccH
Confidence 489999999999999999988764 34654 45556655432 2233 89999999999987643321100 011
Q ss_pred HHHHHHHHHhccC-------------CCCeEEEEecCCcc----------------------------------------
Q psy4165 72 ATLNAFLYRTGEQ-------------SDKFMLVLASNTPQ---------------------------------------- 98 (242)
Q Consensus 72 ~~l~~lL~~l~~~-------------~~~v~vI~tTn~~~---------------------------------------- 98 (242)
.+.+.||..|+.. ....++|.|+|-..
T Consensus 202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 281 (412)
T PRK05342 202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL 281 (412)
T ss_pred HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence 3445555555311 01235555555411
Q ss_pred ------------cccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCCh-hHhHHHHHH
Q psy4165 99 ------------QFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDY-TSLCSKIAH 161 (242)
Q Consensus 99 ------------~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~-~~~l~~la~ 161 (242)
.+.|.|++|+|..+.|.+.+.++..+|+.. .++++...... .++. +.+ +..++.|++
T Consensus 282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~---~~i~---L~~t~~al~~Ia~ 355 (412)
T PRK05342 282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEM---DGVE---LEFTDEALEAIAK 355 (412)
T ss_pred HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---CCcE---EEECHHHHHHHHH
Confidence 146788899999999999999999999984 33322110000 0111 111 334567777
Q ss_pred h--CCCCCHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGV 176 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~ 176 (242)
. ..++-.+-|+.++.
T Consensus 356 ~~~~~~~GAR~Lrriie 372 (412)
T PRK05342 356 KAIERKTGARGLRSILE 372 (412)
T ss_pred hCCCCCCCCchHHHHHH
Confidence 6 34566788888876
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-07 Score=82.61 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+... ++.-|++|||+|.+. ....+.||..|++.+..+.+|++|+.+..|.+++++|
T Consensus 100 d~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 100 DDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 4566666554321 223699999999883 2456788999987777788888888899999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
.. .++|.+++.++-...++..+.+.+ +..+ ...+..+++...| +.+++.+++. ++..++ .
T Consensus 168 c~-~~~F~~Ls~~ei~~~L~~Il~~EG----------i~i~----~~Al~~Ia~~s~G-dlR~alnlLd--qai~~~--~ 227 (535)
T PRK08451 168 TQ-HFRFKQIPQNSIISHLKTILEKEG----------VSYE----PEALEILARSGNG-SLRDTLTLLD--QAIIYC--K 227 (535)
T ss_pred ce-eEEcCCCCHHHHHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcCC-cHHHHHHHHH--HHHHhc--C
Confidence 75 999999999999998888887532 2121 3445778887765 7777777765 333343 3
Q ss_pred CCccHHHHH
Q psy4165 188 GVLTEAMVM 196 (242)
Q Consensus 188 ~~~~~~~~~ 196 (242)
+.+|.+++.
T Consensus 228 ~~It~~~V~ 236 (535)
T PRK08451 228 NAITESKVA 236 (535)
T ss_pred CCCCHHHHH
Confidence 345555444
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-07 Score=85.43 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++..|++|||+|.+.. ...+.||..|++.+..+++|++|+.++.|++.+++
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh
Confidence 45577777776643 2357999999999832 35788999998888888999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|.+|+.++....++..+.+.+.. .+ ...+..+|..+. -+.+++..++. ....+.
T Consensus 168 Rcq-~ieF~~L~~eeI~~~L~~il~kegI~----------id----~eAl~~LA~lS~-GslR~AlslLe--kl~~y~-- 227 (725)
T PRK07133 168 RVQ-RFNFRRISEDEIVSRLEFILEKENIS----------YE----KNALKLIAKLSS-GSLRDALSIAE--QVSIFG-- 227 (725)
T ss_pred hce-eEEccCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHcC-CCHHHHHHHHH--HHHHhc--
Confidence 996 89999999999999999887753221 11 223467777765 45666666665 223332
Q ss_pred CCCccHHHHHH
Q psy4165 187 DGVLTEAMVMS 197 (242)
Q Consensus 187 ~~~~~~~~~~~ 197 (242)
.+.++.+++.+
T Consensus 228 ~~~It~e~V~e 238 (725)
T PRK07133 228 NNKITLKNVEE 238 (725)
T ss_pred cCCCCHHHHHH
Confidence 33466665544
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-07 Score=76.43 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=84.3
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~ 121 (242)
.+|+|||++.+.++ ......+-.+++.+-+.+..-+++.+++.|.. +.|.|++|+. ..+++++|+.++
T Consensus 99 dlliiDdi~~~~~~-------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 99 SLVCIDNIECIAGD-------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred CEEEEeChhhhcCC-------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 58999999998542 12233344444443222222355566667666 5799999985 799999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
|.++++...... ++.++ +..++.|+++.+ =+.+.+..++......+.. ....+|.+.+.+.+
T Consensus 172 ~~~~l~~~a~~~----------~~~l~----~~v~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 172 KLQALQLRARLR----------GFELP----EDVGRFLLKRLD-REMRTLFMTLDQLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHHHHc----------CCCCC----HHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 999999866542 22222 334578999987 4777888887744322322 23458888777665
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-07 Score=84.72 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++-+.+... .+.-|++|||+|.+- ....+.||+.|++.+..+++|++|+.+..|.+.|++
T Consensus 100 vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 100 VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 34455555544321 224799999999983 236788999999888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|.. .++|..++.++-.+.++..+.+.+ +. ++ +..+..+++... -+.+++.+++. +...+. .
T Consensus 168 Rc~-~~~F~~l~~~~i~~~L~~i~~~eg----------i~---i~-~~al~~Ia~~s~-GdlR~aln~Ld--ql~~~~-~ 228 (584)
T PRK14952 168 RTH-HYPFRLLPPRTMRALIARICEQEG----------VV---VD-DAVYPLVIRAGG-GSPRDTLSVLD--QLLAGA-A 228 (584)
T ss_pred hce-EEEeeCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHcC-CCHHHHHHHHH--HHHhcc-C
Confidence 974 899999999999999988887632 11 22 233455666543 56666666665 323332 2
Q ss_pred CCCccHHHHH
Q psy4165 187 DGVLTEAMVM 196 (242)
Q Consensus 187 ~~~~~~~~~~ 196 (242)
.+.+|.+++.
T Consensus 229 ~~~It~~~v~ 238 (584)
T PRK14952 229 DTHVTYQRAL 238 (584)
T ss_pred CCCcCHHHHH
Confidence 3445554443
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=83.80 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=59.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCcccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~~~ld~al~~Rfd~~ 111 (242)
-.||||||||.++.+..+.+..-....+...||.-++ -...+|++|++. ..|.+|=|.|.|||...
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 4699999999999765322211112235556666653 124578999865 46888999999999999
Q ss_pred EEeCCCCHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLV 126 (242)
Q Consensus 112 i~~~~P~~~~R~~Il 126 (242)
+++.+++.++-.+||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999888
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=82.85 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=104.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|+++|..+++||..++++.+.. +.|+. +..+..++..+ .... |+||||||+|.+.+++.+...... -.
T Consensus 131 ~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~-~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 131 LLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQ-KGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcc-cceEEecccchhchhhccccccccccch
Confidence 489999999999999999988763 33653 45555555432 1233 899999999999886543221110 01
Q ss_pred HHHHHHHHHhcc-------C------CCCeEEEEecCCc---------------------------c-------------
Q psy4165 72 ATLNAFLYRTGE-------Q------SDKFMLVLASNTP---------------------------Q------------- 98 (242)
Q Consensus 72 ~~l~~lL~~l~~-------~------~~~v~vI~tTn~~---------------------------~------------- 98 (242)
.+.+.||+-|+. . ..+.++|.|+|-. .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 289 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLR 289 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHH
Confidence 234445544421 0 1235677777651 0
Q ss_pred ----------cccHHHhcccccEEEeCCCCHHHHHHHHHHH----HhccccchhhhcccccccCCC--Ch-hHhHHHHHH
Q psy4165 99 ----------QFDWAVNDRLDEMVEFPLPTLNERERLVRLY----FDKFVLQPAAQGKRRLKVAPF--DY-TSLCSKIAH 161 (242)
Q Consensus 99 ----------~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~----l~~~~~~~~~~~~~~~~~~~~--d~-~~~l~~la~ 161 (242)
.+.|+|++|+|.++.|.+.+.++..+|+... ++++.. .+....+ .+ +..++.|++
T Consensus 290 ~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~--------~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 290 QVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQA--------LFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred HHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHH--------HhccCCeEEEECHHHHHHHHH
Confidence 1457788999999999999999999999874 332110 0111111 11 334577887
Q ss_pred h--CCCCCHHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGVA 177 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~~ 177 (242)
. ..++-.+-|+.++..
T Consensus 362 ~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 362 KALERKTGARGLRSIVEG 379 (413)
T ss_pred hCCCCCCCchHHHHHHHH
Confidence 6 345678888888863
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=90.20 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=94.7
Q ss_pred hHHHHHHhcCCcEEEEecCCccc----------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP----------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~----------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
|++.||..+|..|+.++.+-+.. |.|.-...+-+-+.+|+..+ -+++|||||.+...- .++..+..-
T Consensus 366 LgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N--Pv~LLDEIDKm~ss~-rGDPaSALL 442 (782)
T COG0466 366 LGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN--PVFLLDEIDKMGSSF-RGDPASALL 442 (782)
T ss_pred HHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcC--CeEEeechhhccCCC-CCChHHHHH
Confidence 78999999999999998655431 34777788888899999887 588999999997642 122122111
Q ss_pred HHH-----HHHHHH-hc--cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 72 ATL-----NAFLYR-TG--EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 72 ~~l-----~~lL~~-l~--~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.++ +.|..+ ++ -.-++|++|+|+|..+.||.+|+.|.. .|+++-.+.++..+|-+.||=
T Consensus 443 EVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 443 EVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhcc
Confidence 111 122221 11 123469999999999999999999997 999999999999999999984
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-07 Score=81.33 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=85.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
...||+|||+|.+.. ...+.|+..|++.++.+++|++||.+..|.+++++|+. .++|++|+.++-..
T Consensus 121 ~~kvvIIdead~lt~------------~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~ 187 (451)
T PRK06305 121 RYKIYIIDEVHMLTK------------EAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIID 187 (451)
T ss_pred CCEEEEEecHHhhCH------------HHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHH
Confidence 378999999998832 24578888898777788888889999999999999996 89999999999999
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
.++..+.+.+ +.. + ...+..|+..+.| +.+++.+.+. ....+. .+.++.+++.+.
T Consensus 188 ~L~~~~~~eg----------~~i---~-~~al~~L~~~s~g-dlr~a~~~Le--kl~~~~--~~~It~~~V~~l 242 (451)
T PRK06305 188 KLALIAKQEG----------IET---S-REALLPIARAAQG-SLRDAESLYD--YVVGLF--PKSLDPDSVAKA 242 (451)
T ss_pred HHHHHHHHcC----------CCC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--cCCcCHHHHHHH
Confidence 8888876532 112 1 2334667777653 4444444443 222222 234666665543
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-07 Score=81.82 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=59.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCcccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~~~ld~al~~Rfd~~ 111 (242)
-.||||||||.++.+.++.+..-....+...||.-++ -...+|++|++. ..|.+|-|.|.|||...
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR 329 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 3699999999999775432211112335556666653 234578999754 56888999999999999
Q ss_pred EEeCCCCHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLV 126 (242)
Q Consensus 112 i~~~~P~~~~R~~Il 126 (242)
+++.+++.++-.+||
T Consensus 330 v~L~~L~~~dL~~IL 344 (443)
T PRK05201 330 VELDALTEEDFVRIL 344 (443)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999988
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.1e-07 Score=83.93 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++.+.+... .+.-|++|||+|.+- ....+.||+.|++....+++|++|+++..+-+.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 3456788888777632 224799999999983 2356888999988888888999899999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++|+. .++|+.|+.++-...+.....+.+. . ++ ...+..+++.+.| +.+++.+++.
T Consensus 169 rSRc~-~~~f~~l~~~ei~~~L~~ia~kegi----------~---is-~~al~~La~~s~G-~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQ-RFDFRRIPLEAMVQHLSEIAEKESI----------E---IE-PEALTLVAQRSQG-GLRDAESLLD 224 (620)
T ss_pred Hhhee-EEEecCCCHHHHHHHHHHHHHHhCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99995 7899999888888777777665221 1 11 2334677777654 3455555554
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=80.26 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=111.0
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchH-H---HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSG-V---TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~-e---~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
|++|+++++ +..++++++.++...+-.+ . ..+..+.+..+ .+.+|+|||++.+.++ .....
T Consensus 157 Ll~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~---~~dvLiIDDiq~l~~k-------~~~~e 226 (450)
T PRK14087 157 LLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC---QNDVLIIDDVQFLSYK-------EKTNE 226 (450)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc---cCCEEEEeccccccCC-------HHHHH
Confidence 678888854 4678889888876543111 1 12222222222 2679999999988542 12233
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.+-.+++.+.... +-+||.+...|.. +++.|.+|| ...+.+.+|+.++|..|++..+...++ ..
T Consensus 227 ~lf~l~N~~~~~~-k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl----------~~ 295 (450)
T PRK14087 227 IFFTIFNNFIEND-KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI----------KQ 295 (450)
T ss_pred HHHHHHHHHHHcC-CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC----------CC
Confidence 4444444443222 3344443344443 478888898 478889999999999999999975321 00
Q ss_pred CCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE-DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-~~~~~~~~~~~a~~~~ 202 (242)
.++ +..++.|+..+.| +++.+..+++.+...+.... ...+|.+.+.+++...
T Consensus 296 -~l~-~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 296 -EVT-EEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred -CCC-HHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 122 4456889998875 88888888885553333332 2578999888888765
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-07 Score=72.45 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. .++..||+|||+|.+.. ...+.||..|++.+...++|++||.+..|++++.+|
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 456666666654 23368999999999842 235678888877777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
+. .++|++|+.++..++++..
T Consensus 147 ~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 147 CQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred cE-EeeCCCCCHHHHHHHHHHc
Confidence 95 8999999999988877765
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=81.48 Aligned_cols=138 Identities=21% Similarity=0.174 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.++.. ++.-|++|||+|.+. ....+.||+.|++....+++|++|+.++.+.+.+++
T Consensus 114 vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 114 VDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 34677777776532 235799999999983 235688999998888888888888989999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+. .++|..|+.++-...++..+.+.+. .. + ...++.|++.+.| +.+++.+++. +...+.
T Consensus 182 Rcq-~~~f~~l~~~el~~~L~~i~~kegi----------~i---~-~eAl~lIa~~a~G-dlr~al~~Ld--kli~~g-- 241 (598)
T PRK09111 182 RCQ-RFDLRRIEADVLAAHLSRIAAKEGV----------EV---E-DEALALIARAAEG-SVRDGLSLLD--QAIAHG-- 241 (598)
T ss_pred hee-EEEecCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHcCC-CHHHHHHHHH--HHHhhc--
Confidence 995 8999999999999999998876322 11 1 2344677888764 7777777776 333332
Q ss_pred CCCccHHHHHHHH
Q psy4165 187 DGVLTEAMVMSKV 199 (242)
Q Consensus 187 ~~~~~~~~~~~a~ 199 (242)
.+.+|.+++...+
T Consensus 242 ~g~It~e~V~~ll 254 (598)
T PRK09111 242 AGEVTAEAVRDML 254 (598)
T ss_pred CCCcCHHHHHHHh
Confidence 3457776666543
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-06 Score=81.45 Aligned_cols=138 Identities=19% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++.+.+.+. ..++.-|++|||+|.+.. ...+.||+.|++.++.+++|++|+.+..|.+.+.+|
T Consensus 110 d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR 177 (620)
T PRK14954 110 DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 (620)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 45566555542 122247999999999832 246789999988777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh---
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA--- 184 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~--- 184 (242)
.. .++|.+|+.++-...++..+.+.+ +.. + ...++.++..+.| +.+++.+.+. +...++
T Consensus 178 c~-~vef~~l~~~ei~~~L~~i~~~eg----------i~I---~-~eal~~La~~s~G-dlr~al~eLe--KL~~y~~~~ 239 (620)
T PRK14954 178 CQ-RFNFKRIPLDEIQSQLQMICRAEG----------IQI---D-ADALQLIARKAQG-SMRDAQSILD--QVIAFSVGS 239 (620)
T ss_pred ce-EEecCCCCHHHHHHHHHHHHHHcC----------CCC---C-HHHHHHHHHHhCC-CHHHHHHHHH--HHHHhcccc
Confidence 85 999999999998888888776522 111 2 3344677877754 5556666555 344444
Q ss_pred hcCCCccHHHHHHH
Q psy4165 185 SEDGVLTEAMVMSK 198 (242)
Q Consensus 185 ~~~~~~~~~~~~~a 198 (242)
...+.|+.+++.+.
T Consensus 240 ~~~~~It~~~V~~l 253 (620)
T PRK14954 240 EAEKVIAYQGVAEL 253 (620)
T ss_pred ccCCccCHHHHHHH
Confidence 22446777666553
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-06 Score=69.77 Aligned_cols=159 Identities=11% Similarity=0.115 Sum_probs=96.6
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||+++++++ +.+++.+++.++.. .+... .. +.+|+|||+|.+.. .....+..++
T Consensus 58 La~ai~~~~~~~~~~~~~i~~~~~~~-----------~~~~~--~~-~~~liiDdi~~l~~---------~~~~~L~~~~ 114 (227)
T PRK08903 58 LLQALVADASYGGRNARYLDAASPLL-----------AFDFD--PE-AELYAVDDVERLDD---------AQQIALFNLF 114 (227)
T ss_pred HHHHHHHHHHhCCCcEEEEehHHhHH-----------HHhhc--cc-CCEEEEeChhhcCc---------hHHHHHHHHH
Confidence 677887764 56777777655421 01111 12 57999999998732 1223344444
Q ss_pred HHhccCCCCeEEEEecC-Ccc--cccHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASN-TPQ--QFDWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn-~~~--~ld~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
..+... +..++|.+++ .+. .+.+.+.+|| ...+++++|+.+++..+++.+..+.+ +.++ .
T Consensus 115 ~~~~~~-~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~----------v~l~----~ 179 (227)
T PRK08903 115 NRVRAH-GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG----------LQLA----D 179 (227)
T ss_pred HHHHHc-CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC----------CCCC----H
Confidence 444332 3333444443 332 3557777787 46999999999999999998776532 2222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
..++.|++..+ =+.+++.++++.....+. .....+|...+.+.+.
T Consensus 180 ~al~~L~~~~~-gn~~~l~~~l~~l~~~~~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 180 EVPDYLLTHFR-RDMPSLMALLDALDRYSL-EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHh
Confidence 34577888654 488888888874333222 3446888888887764
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=78.16 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+. ..++..|++|||+|.+.. ...+.||..+++.+...++|++|+.+..+-+++.+
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~s 176 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS 176 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------HHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHH
Confidence 345666555553 122247999999999832 24567888887777777778788888999999998
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh-
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS- 185 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~- 185 (242)
|+. .++|++++.++-...++..+.+.+. . ++ ...++.++..+.| +.+.+.+.+. +...++.
T Consensus 177 R~~-~v~f~~l~~~ei~~~l~~~~~~~g~----------~---i~-~~al~~l~~~s~g-~lr~a~~~L~--kl~~~~~~ 238 (397)
T PRK14955 177 RCQ-RFNFKRIPLEEIQQQLQGICEAEGI----------S---VD-ADALQLIGRKAQG-SMRDAQSILD--QVIAFSVE 238 (397)
T ss_pred HHH-HhhcCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhccc
Confidence 886 8999999999988888888765221 1 22 3344667777653 5556666655 3334432
Q ss_pred --cCCCccHHHHHHH
Q psy4165 186 --EDGVLTEAMVMSK 198 (242)
Q Consensus 186 --~~~~~~~~~~~~a 198 (242)
....++.+++.+.
T Consensus 239 ~~~~~~It~~~v~~~ 253 (397)
T PRK14955 239 SEGEGSIRYDKVAEL 253 (397)
T ss_pred cCCCCccCHHHHHHH
Confidence 2346777766554
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=74.10 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=100.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc------ccc-chH-HHHHHH-------------------HHHHHHhCCCcEEEEEec
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA------PMG-SSG-VTAIHK-------------------VFDWASSSRKGLVLFIDE 53 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~------~~~-g~~-e~~l~~-------------------~f~~A~~~~~p~Il~iDe 53 (242)
++|+++|..+|.+++.++++.-. ..+ |.. ...+.. .+..|... +.+|+|||
T Consensus 36 ~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~--g~~lllDE 113 (262)
T TIGR02640 36 TLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE--GFTLVYDE 113 (262)
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHc--CCEEEEcc
Confidence 48999999999999999876422 111 111 111111 11223322 68999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHh----cc---------CCCCeEEEEecCCc-----ccccHHHhcccccEEEeC
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRT----GE---------QSDKFMLVLASNTP-----QQFDWAVNDRLDEMVEFP 115 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l----~~---------~~~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~ 115 (242)
+|.+- ......+..+|.+- .+ ...++.||+|+|.. ..+++++..|| ..++++
T Consensus 114 i~r~~---------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~ 183 (262)
T TIGR02640 114 FTRSK---------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMD 183 (262)
T ss_pred hhhCC---------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc-EEEECC
Confidence 99973 33344444444321 00 11245789999976 36799999999 589999
Q ss_pred CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC----CCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 116 LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE----GLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 116 ~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~----g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
.|+.++-.+|++.+.. .. +-. -..+-.++..+. -..++ ++..+..++++........++
T Consensus 184 ~P~~~~e~~Il~~~~~---~~------------~~~-~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~ 246 (262)
T TIGR02640 184 YPDIDTETAILRAKTD---VA------------EDS-AATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIPVDVD 246 (262)
T ss_pred CCCHHHHHHHHHHhhC---CC------------HHH-HHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999998752 11 000 001111211111 12333 555555444444444456778
Q ss_pred HHHHHHHHHHHH
Q psy4165 192 EAMVMSKVEDSI 203 (242)
Q Consensus 192 ~~~~~~a~~~~~ 203 (242)
.+++.+....++
T Consensus 247 ~~~~~~~~~~~~ 258 (262)
T TIGR02640 247 DEDFVDLCIDIL 258 (262)
T ss_pred cHHHHHHHHHHh
Confidence 888887776665
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-07 Score=86.81 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=99.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc------cchHH-----HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM------GSSGV-----TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~------~g~~e-----~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
.+|+++|..++.+|+.++++++... .|... ..-..+.+..+... .+||||||+|.+-+
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p-~sVlllDEieka~~---------- 571 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHP-HAVLLLDEIEKAHP---------- 571 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCC-CcEEEeccHhhhhH----------
Confidence 3799999999999999998876431 12110 00112222333333 69999999999832
Q ss_pred HHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------------------------ccccHHHhcccccEEE
Q psy4165 70 LRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------------------------QQFDWAVNDRLDEMVE 113 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------------------------~~ld~al~~Rfd~~i~ 113 (242)
.+.+.||+.|++. -.++++|+|||.- ..+.|.|++|+|.+|.
T Consensus 572 --~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~ 649 (758)
T PRK11034 572 --DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649 (758)
T ss_pred --HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEE
Confidence 2445555555411 1357899999822 2366888899999999
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
|++.+.++..+|+..++.++...... .++.+. ++ +..++.|++.. .+|-.+.|+.++.
T Consensus 650 f~~L~~~~l~~I~~~~l~~~~~~l~~---~~i~l~-~~-~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 650 FDHLSTDVIHQVVDKFIVELQAQLDQ---KGVSLE-VS-QEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCce-EC-HHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 99999999999999998764322111 111111 11 23446677652 2345677777775
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-06 Score=70.65 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=95.9
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|++++ -|...++++..++ ...+.+.++.... ..+|+|||+|.+..... ....+-.++
T Consensus 57 L~~a~~~~~~~~~~~~~y~~~~~~-------~~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~-------~~~~lf~l~ 119 (233)
T PRK08727 57 LALALCAAAEQAGRSSAYLPLQAA-------AGRLRDALEALEG---RSLVALDGLESIAGQRE-------DEVALFDFH 119 (233)
T ss_pred HHHHHHHHHHHcCCcEEEEeHHHh-------hhhHHHHHHHHhc---CCEEEEeCcccccCChH-------HHHHHHHHH
Confidence 56666554 3445555554332 2234444544432 57999999998864321 122333454
Q ss_pred HHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
...... +.-+++.+...|..+ ++++.+|| ...+++++|+.++|.+|++...... ++.++ +
T Consensus 120 n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~----------~l~l~----~ 184 (233)
T PRK08727 120 NRARAA-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR----------GLALD----E 184 (233)
T ss_pred HHHHHc-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 444222 222444455567766 68999997 6689999999999999999876542 22222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
..++.|+++++ =+.+.+.+++......+... ...+|.+.+.+.+.
T Consensus 185 e~~~~La~~~~-rd~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 185 AAIDWLLTHGE-RELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 34478888865 23333333354333323332 34788888877664
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-06 Score=74.26 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=97.9
Q ss_pred hHHHHHHhcC-----CcEEEEecCCcccccchHHHHHHHHH-HHHHhC----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMGSSGVTAIHKVF-DWASSS----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~g~~e~~l~~~f-~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+++++++++. .+++.+++++-.. ...++..+ ..+... ..+.+|+|||+|.+.. .
T Consensus 54 ~~~~l~~~l~~~~~~~~~i~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~-- 117 (319)
T PRK00440 54 AALALARELYGEDWRENFLELNASDERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------D-- 117 (319)
T ss_pred HHHHHHHHHcCCccccceEEeccccccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------H--
Confidence 6788888763 3455555443211 11222222 222221 2257999999998832 1
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
....|+..++.......+|.++|.+..+.+++.+|+. .++|++|+.++...+++.++.+.+. . ++
T Consensus 118 -~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~----------~---i~ 182 (319)
T PRK00440 118 -AQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGI----------E---IT 182 (319)
T ss_pred -HHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCC----------C---CC
Confidence 1234555555555556777788888899999999987 6999999999999999999876322 1 22
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
...++.+++.+. +|++.+.+..+.+.. ....+|.+++..++
T Consensus 183 -~~al~~l~~~~~----gd~r~~~~~l~~~~~--~~~~it~~~v~~~~ 223 (319)
T PRK00440 183 -DDALEAIYYVSE----GDMRKAINALQAAAA--TGKEVTEEAVYKIT 223 (319)
T ss_pred -HHHHHHHHHHcC----CCHHHHHHHHHHHHH--cCCCCCHHHHHHHh
Confidence 334577877754 455555543333322 23467777766654
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=85.18 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=101.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
.||+++|..++.+++.++++++... .|.. .-..+.+..+.. +.+||+|||+|.+-+
T Consensus 499 ~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~--~~~~l~~~~~~~-p~~VvllDEieka~~-------- 567 (731)
T TIGR02639 499 ELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFE--QGGLLTEAVRKH-PHCVLLLDEIEKAHP-------- 567 (731)
T ss_pred HHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccc--hhhHHHHHHHhC-CCeEEEEechhhcCH--------
Confidence 3799999999999999998776431 1211 112233333433 379999999998732
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcc-------------------------cccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQ-------------------------QFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~-------------------------~ld~al~~Rfd~~ 111 (242)
.+.+.||+-|++. -.+.++|+|||... .+.|.|++|||.+
T Consensus 568 ----~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 568 ----DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred ----HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeE
Confidence 2445555555421 12478899998632 2578888999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
|.|.+.+.++..+|++..+.++...... .++.+. ++ +..++.|++. ...|-.+.|+.++.
T Consensus 644 i~F~pLs~e~l~~Iv~~~L~~l~~~l~~---~~~~l~-i~-~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 644 IHFNPLSEEVLEKIVQKFVDELSKQLNE---KNIKLE-LT-DDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHh---CCCeEE-eC-HHHHHHHHHhCCCcccCchHHHHHHH
Confidence 9999999999999999999764221110 111111 11 2344667775 34466788888875
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-06 Score=79.46 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++.+...+... ++.-|++|||+|.+. ....+.||..|++.+...++|++|+.+..|-+.|++
T Consensus 103 vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 45677777776533 123599999999983 234678999998877778888888888999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+. .++|.+++.++-...++..+.+.+. ..+ ...++.|+..+. -+.+++.+++.
T Consensus 171 Rc~-iv~f~~ls~~ei~~~L~~ia~~egi----------~i~----~~al~~La~~s~-gdlr~al~~Le 224 (614)
T PRK14971 171 RCQ-IFDFNRIQVADIVNHLQYVASKEGI----------TAE----PEALNVIAQKAD-GGMRDALSIFD 224 (614)
T ss_pred hhh-eeecCCCCHHHHHHHHHHHHHHcCC----------CCC----HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 986 7999999999999999888876322 222 223477888874 35556655554
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-06 Score=71.09 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++|+|+++ +..+++++..++... ...+.+..+. .-+|+|||++.+.++. .....+-.++
T Consensus 61 Ll~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~~~---~d~LiiDDi~~~~~~~-------~~~~~Lf~l~ 123 (234)
T PRK05642 61 LLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNLEQ---YELVCLDDLDVIAGKA-------DWEEALFHLF 123 (234)
T ss_pred HHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhhhh---CCEEEEechhhhcCCh-------HHHHHHHHHH
Confidence 567777643 456666766655332 1223333332 2589999999885432 1222334444
Q ss_pred HHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 79 YRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+.+. ..++.++|+++..|..+ .|.+++|| ...+.+.+|+.++|..+++...... ++.++ +
T Consensus 124 n~~~-~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~----------~~~l~----~ 188 (234)
T PRK05642 124 NRLR-DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR----------GLHLT----D 188 (234)
T ss_pred HHHH-hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----------CCCCC----H
Confidence 4432 23456777777666544 68888998 4678889999999999999665442 12222 3
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++.|+++.+ -+++.+..++......+.. ....+|...+.+.+
T Consensus 189 ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 189 EVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 44578888876 5888888888755433333 23568887777665
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-06 Score=77.42 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ...-||+|||+|.+.. ..++.||+.+++.....++|++|+.++.+.+.+.+|
T Consensus 103 d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 103 DDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 3455555444321 2357999999998831 346778888887777778888888889999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+. .++|+.++..+...+++..+.+.+. . ++ ...+..++..+.| +.+++.+.+. +...+ ..
T Consensus 171 ~~-~i~f~~l~~~el~~~L~~~a~~egl----------~---i~-~eal~~La~~s~G-dlr~al~~Le--kL~~y--~~ 230 (585)
T PRK14950 171 CQ-RFDFHRHSVADMAAHLRKIAAAEGI----------N---LE-PGALEAIARAATG-SMRDAENLLQ--QLATT--YG 230 (585)
T ss_pred cc-eeeCCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHHcCC-CHHHHHHHHH--HHHHh--cC
Confidence 86 7899999999999999888765322 1 11 2345778888765 7777777776 22333 34
Q ss_pred CCccHHHHHH
Q psy4165 188 GVLTEAMVMS 197 (242)
Q Consensus 188 ~~~~~~~~~~ 197 (242)
+.++.+++.+
T Consensus 231 ~~It~e~V~~ 240 (585)
T PRK14950 231 GEISLSQVQS 240 (585)
T ss_pred CCCCHHHHHH
Confidence 4677766544
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.5e-07 Score=84.87 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=89.8
Q ss_pred cCCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 10 SGMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
-+..++.++.+.+.. +| |+.|.+++.+.++.++.. +.|||||||+.+.+.....++......++.-.| -.+
T Consensus 225 ~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARG 298 (786)
T COG0542 225 KDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARG 298 (786)
T ss_pred cCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcC
Confidence 456789999888874 66 999999999999999888 999999999999987655331122222332222 255
Q ss_pred CeEEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 87 KFMLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 87 ~v~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
.+-+||+|.. .-.=|+||-+||. .|.+.-|+.++-..||+..-.++
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 6778887743 3356999999998 89999999999999999877664
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=76.90 Aligned_cols=127 Identities=25% Similarity=0.321 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH
Q psy4165 28 SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al 104 (242)
.+...++++-+.+.-. .+.-|.+|||++-+ ....+|.||+.+++.+..|++|.+|..++.+++-+
T Consensus 99 ~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 99 TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 4556788888877632 12579999999887 46688999999999999999999999999999999
Q ss_pred hcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 105 ~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
++|+. .+.|..-+.++....|+..+.+-+. ..+ +..|.-+|+..+| |.+|...++. ++..++
T Consensus 167 lSRcq-~f~fkri~~~~I~~~L~~i~~~E~I----------~~e----~~aL~~ia~~a~G-s~RDalslLD--q~i~~~ 228 (515)
T COG2812 167 LSRCQ-RFDFKRLDLEEIAKHLAAILDKEGI----------NIE----EDALSLIARAAEG-SLRDALSLLD--QAIAFG 228 (515)
T ss_pred hhccc-cccccCCCHHHHHHHHHHHHHhcCC----------ccC----HHHHHHHHHHcCC-ChhhHHHHHH--HHHHcc
Confidence 99986 7889999999999999999876322 222 3445778888875 7789988888 444444
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-06 Score=72.62 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. .++.-|++||++|.+. ....|.||+.+++.++++++|.+|+.++.|.|.+++|
T Consensus 89 d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred HHHHHHHHHHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 345555444432 2235788999999993 3467899999998888999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l 130 (242)
+. .+.|++|+.++-.+.+....
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhc
Confidence 97 69999999998887777643
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-05 Score=66.01 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=80.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc--ccHHHhcccc--cEEEeCCCCHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ--FDWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~--ld~al~~Rfd--~~i~~~~P~~~~ 121 (242)
..+|+|||||.+- + ..+-.+++.+.+ .++.++|+++..|.. + |+|++|+. ..+++.+|+.+.
T Consensus 86 ~d~lliDdi~~~~---------~---~~lf~l~N~~~e-~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 86 YNAFIIEDIENWQ---------E---PALLHIFNIINE-KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred CCEEEEeccccch---------H---HHHHHHHHHHHh-cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHH
Confidence 4689999999541 1 133344444433 345677777765554 6 78888885 369999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+..+++......+ +.++ +..++.|+++++ =+.+.+.+++....+.+.. ....+|.+.+.+.+
T Consensus 152 ~~~~l~k~~~~~~----------l~l~----~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 152 IKILIFKHFSISS----------VTIS----RQIIDFLLVNLP-REYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHcC----------CCCC----HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 9999999887522 2222 344578888876 4777777777643322222 33468887777654
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-06 Score=67.69 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=70.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc---ccHHHhccccc--EEEeCCCCHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLDE--MVEFPLPTLN 120 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd~--~i~~~~P~~~ 120 (242)
.-+|+|||+|.+.++ ......+-.+++.+... ++-+||.+-..|.. +++.|.+||.. .+++.+|+.+
T Consensus 98 ~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp SSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred CCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 479999999999642 22344555555555333 34466665555554 57788888754 8999999999
Q ss_pred HHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 121 ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 121 ~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
.|.+|++......+. .++ +..++.|+++.+ -+.++|..+++.
T Consensus 170 ~r~~il~~~a~~~~~----------~l~----~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 170 DRRRILQKKAKERGI----------ELP----EEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHHHHHHTT------------S-----HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----------CCc----HHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 999999999986432 222 344578999976 588888888873
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=78.89 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=97.2
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------chHHH-----HHHHHHHHHHhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SSGVT-----AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~~e~-----~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
.+|++||..+ +.+++.++++.+.... |.... .-..+....+... .+||||||||.+-
T Consensus 610 ~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p-~~vlllDeieka~-------- 680 (852)
T TIGR03346 610 ELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP-YSVVLFDEVEKAH-------- 680 (852)
T ss_pred HHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-CcEEEEeccccCC--------
Confidence 3789999876 4689999887764311 10000 0122333344333 5899999999872
Q ss_pred chHHHHHHHHHHHHhccC-----------CCCeEEEEecCCccc-------------------------ccHHHhccccc
Q psy4165 67 SESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQ-------------------------FDWAVNDRLDE 110 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~-------------------------ld~al~~Rfd~ 110 (242)
. .+.+.||+-+++. -.+.+||+|||.... +.|.|+.|+|.
T Consensus 681 -~---~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~ 756 (852)
T TIGR03346 681 -P---DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE 756 (852)
T ss_pred -H---HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCe
Confidence 2 2344555544311 134788999997221 34667789999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 111 MVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 111 ~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
++.|.+++.+...+|+...+..+...... .++.. .++ +..++.|++.. ..+..+.|++++.
T Consensus 757 IivF~PL~~e~l~~I~~l~L~~l~~~l~~---~~~~l-~i~-~~a~~~L~~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 757 IVVFHPLGREQIARIVEIQLGRLRKRLAE---RKITL-ELS-DAALDFLAEAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred EEecCCcCHHHHHHHHHHHHHHHHHHHHH---CCCee-cCC-HHHHHHHHHhCCCCCCCchhHHHHHH
Confidence 99999999999999999998754321111 11111 122 33446777762 2466788888886
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=73.64 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=84.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc---cchHHHH----------HHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM---GSSGVTA----------IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~---~g~~e~~----------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+.+|..+|.+++.++++...+. .|...-. ....+..|... |++|++||+|..-
T Consensus 79 tla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~--g~illlDEin~a~--------- 147 (327)
T TIGR01650 79 THIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH--NVALCFDEYDAGR--------- 147 (327)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC--CeEEEechhhccC---------
Confidence 3799999999999999987765542 2432111 11234445433 7999999999872
Q ss_pred hHHHHHHHHHHHH---h--cc------CCCCeEEEEecCCcc------------cccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 68 ESLRATLNAFLYR---T--GE------QSDKFMLVLASNTPQ------------QFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 68 ~~~~~~l~~lL~~---l--~~------~~~~v~vI~tTn~~~------------~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
......++.+|.. + .+ ....+.||+|+|... .+++|++.||-..+.+++|+.++-.+
T Consensus 148 p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~ 227 (327)
T TIGR01650 148 PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAA 227 (327)
T ss_pred HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHH
Confidence 3345566667652 1 11 223577899999865 46899999998888999999999999
Q ss_pred HHHHHHh
Q psy4165 125 LVRLYFD 131 (242)
Q Consensus 125 Il~~~l~ 131 (242)
|+.....
T Consensus 228 Il~~~~~ 234 (327)
T TIGR01650 228 IVLAKAK 234 (327)
T ss_pred HHHhhcc
Confidence 9987654
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-06 Score=70.82 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred hHHHHHHhcCCc------EEEEecCCccccc--chHHHHHHHHHHHHHh-----CCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHSGMD------YAIMTGGDVAPMG--SSGVTAIHKVFDWASS-----SRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~~~~------~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~-----~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
.|+|+|.+++++ +..++.++-.+.. .+..++..++-..-.. +.++-||+|||+|++.
T Consensus 73 talafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt---------- 142 (346)
T KOG0989|consen 73 TALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT---------- 142 (346)
T ss_pred HHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh----------
Confidence 478888888872 3344555544321 2322333332222211 1112799999999994
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA 148 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~ 148 (242)
....+.|..-|+.++..+.+|..||+++.|+..+.+|.. ++.|++...+.....|+....+-
T Consensus 143 --sdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E--------------- 204 (346)
T KOG0989|consen 143 --SDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKE--------------- 204 (346)
T ss_pred --HHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHh---------------
Confidence 234566777788888889999999999999999999997 78888888888888888877652
Q ss_pred CCCh-hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 149 PFDY-TSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 149 ~~d~-~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
++++ +..++.|++. |++||+..+...+....
T Consensus 205 ~v~~d~~al~~I~~~----S~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 205 GVDIDDDALKLIAKI----SDGDLRRAITTLQSLSL 236 (346)
T ss_pred CCCCCHHHHHHHHHH----cCCcHHHHHHHHHHhhc
Confidence 2222 2334666666 66788887765444443
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-05 Score=74.37 Aligned_cols=190 Identities=17% Similarity=0.081 Sum_probs=111.0
Q ss_pred ChHHHHHHhcCC--cEEEEecCCcccc-cchHHHHHHHHHHHHH---------hCCCcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGDVAPM-GSSGVTAIHKVFDWAS---------SSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~l~~~-~g~~e~~l~~~f~~A~---------~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++|++++..++. ||+.+..+..... .|.. .+.+.+.... ... ..+||+||++.+-+
T Consensus 31 ~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~-~GvL~lDEi~rl~~--------- 98 (589)
T TIGR02031 31 ALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAP-RGVLYVDMANLLDD--------- 98 (589)
T ss_pred HHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCC-CCcEeccchhhCCH---------
Confidence 478999987754 6888875322222 2321 1111111100 011 46999999999932
Q ss_pred HHHHHHHHHHHHhccC-------------CCCeEEEEecCCcc---cccHHHhcccccEEEeCC-CCHHHHHHHHHHHHh
Q psy4165 69 SLRATLNAFLYRTGEQ-------------SDKFMLVLASNTPQ---QFDWAVNDRLDEMVEFPL-PTLNERERLVRLYFD 131 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~-------------~~~v~vI~tTn~~~---~ld~al~~Rfd~~i~~~~-P~~~~R~~Il~~~l~ 131 (242)
.+.+.|+..|++. ...+.||+|+|..+ .++++++.||+.++.+.. |..++|.+|++.++.
T Consensus 99 ---~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 99 ---GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred ---HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH
Confidence 2334444444321 24578899988875 799999999999888874 577889999998763
Q ss_pred cccc----chhhhc----ccccccCCCChh-HhHHHHHHhC--CCCC-HHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 132 KFVL----QPAAQG----KRRLKVAPFDYT-SLCSKIAHVT--EGLS-GREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 132 ~~~~----~~~~~~----~~~~~~~~~d~~-~~l~~la~~t--~g~s-~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
.... ...... ...-.+..+.++ ..+..++..+ -|.+ .+--..+++.|++.+.-..+..++.+|+..++
T Consensus 176 ~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 176 NEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAV 255 (589)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2110 000000 000011222221 1223333332 2444 44444667777888888888899999999999
Q ss_pred HHHHHh
Q psy4165 200 EDSIRA 205 (242)
Q Consensus 200 ~~~~~~ 205 (242)
.-+...
T Consensus 256 ~lvl~h 261 (589)
T TIGR02031 256 ELVLLP 261 (589)
T ss_pred HHHhhh
Confidence 888744
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-05 Score=62.58 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=82.0
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc---cHHHhcccc--cEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF---DWAVNDRLD--EMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rfd--~~i~~~~P~~~~ 121 (242)
.+|+|||+|.+.. + .. .+-.+++.+.+ .++.+||+++..|..+ .+.+++||. ..+++.+|+.+.
T Consensus 89 ~~l~iDDi~~~~~-----~-~~----~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 GPVLIEDIDAGGF-----D-ET----GLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred CeEEEECCCCCCC-----C-HH----HHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 4788899997621 1 11 23333333322 3455777666555533 677888984 799999999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|.+|++..+...+ +.++ +..++.|+++.+ =+.+.+..+++.....+.. ....+|...+.+.+..
T Consensus 158 ~~~iL~~~~~~~~----------~~l~----~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 158 LSQVIFKLFADRQ----------LYVD----PHVVYYLVSRME-RSLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHcC----------CCCC----HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHh
Confidence 9999999997632 2222 334578998876 3555555555543333333 2356898888888865
Q ss_pred H
Q psy4165 202 S 202 (242)
Q Consensus 202 ~ 202 (242)
.
T Consensus 222 ~ 222 (226)
T PRK09087 222 M 222 (226)
T ss_pred h
Confidence 4
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-05 Score=63.30 Aligned_cols=149 Identities=18% Similarity=0.271 Sum_probs=102.2
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
++||+.++ -|+.++.|...++ ..+-.+++..+....+-|||+||+- |.. .+...+.+..+|
T Consensus 68 lVkall~~y~~~GLRlIev~k~~L--------~~l~~l~~~l~~~~~kFIlf~DDLs--Fe~------~d~~yk~LKs~L 131 (249)
T PF05673_consen 68 LVKALLNEYADQGLRLIEVSKEDL--------GDLPELLDLLRDRPYKFILFCDDLS--FEE------GDTEYKALKSVL 131 (249)
T ss_pred HHHHHHHHHhhcCceEEEECHHHh--------ccHHHHHHHHhcCCCCEEEEecCCC--CCC------CcHHHHHHHHHh
Confidence 67788875 4567888887666 4567777777755447999999853 221 223345556665
Q ss_pred HH-hccCCCCeEEEEecCCcccccHH-----------------------HhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 79 YR-TGEQSDKFMLVLASNTPQQFDWA-----------------------VNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 79 ~~-l~~~~~~v~vI~tTn~~~~ld~a-----------------------l~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
.. +...+.+|++.+|+|+-..++.. |..||...|.|.+|+.++-.+|++.++.+.+
T Consensus 132 eGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 132 EGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred cCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 43 45678889999999976555432 2269999999999999999999999998754
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+. .+.-++......-|..-.|.||+--+..+.
T Consensus 212 ~~----------~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 212 LE----------LDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred CC----------CCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33 332222222234555666889988887775
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=60.59 Aligned_cols=105 Identities=26% Similarity=0.404 Sum_probs=66.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-chHHHH---HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTA---IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~---l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+++.+++.+ +.+++.+++....... ...... ....+....... +.+|++||++.+.. .....+
T Consensus 35 l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lilDe~~~~~~---------~~~~~~ 104 (151)
T cd00009 35 LARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAK-PGVLFIDEIDSLSR---------GAQNAL 104 (151)
T ss_pred HHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCC-CeEEEEeChhhhhH---------HHHHHH
Confidence 688889888 8999999988775432 111111 112223333333 89999999998721 112222
Q ss_pred HHHHHHhcc---CCCCeEEEEecCCcc--cccHHHhcccccEEEeCC
Q psy4165 75 NAFLYRTGE---QSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPL 116 (242)
Q Consensus 75 ~~lL~~l~~---~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~ 116 (242)
..++..+.. ...++.+|++||... .+++.+.+||+..+++++
T Consensus 105 ~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 105 LRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred HHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 333333322 146788999998887 788999999998888763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=70.55 Aligned_cols=151 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----h--c----cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----T--G----EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l--~----~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
+.+||+||++.+- ......+.++|.. + + ..+.++++|+|+|..+ .++++++.||..++.+
T Consensus 132 ~GvL~lDEi~~L~---------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 132 RGILYIDEVNLLE---------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEI 202 (337)
T ss_pred CCEEEecChHhCC---------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEEC
Confidence 5799999999983 2233333333321 0 0 1234688888888655 6999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHhcc--ccchh--hh------cc----cccccCCCChh-H---hHHHHHHhCCCCCHHHHHHHH
Q psy4165 115 PLPTL-NERERLVRLYFDKF--VLQPA--AQ------GK----RRLKVAPFDYT-S---LCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 115 ~~P~~-~~R~~Il~~~l~~~--~~~~~--~~------~~----~~~~~~~~d~~-~---~l~~la~~t~g~s~adi~~lv 175 (242)
+.|.. ++|.+|++...... +.... .+ .+ ..-.+..+.++ . -+-.++..+..-|++--..++
T Consensus 203 ~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~ 282 (337)
T TIGR02030 203 RTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLN 282 (337)
T ss_pred CCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 99976 99999998854321 00000 00 00 00001222221 1 234455555544666666788
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|++.+.-.++..++.+|+..+..-++.-
T Consensus 283 raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 283 RAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 888888888888999999999988777644
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.4e-05 Score=62.94 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=89.0
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc---cc----cHHHhcccccEEEeCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ---QF----DWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~---~l----d~al~~Rfd~~i~~~~P 117 (242)
++.+|+|||+|.+.. .....+..+..........+.|+. |..++ .+ ...+.+|+...+++++.
T Consensus 123 ~~~vliiDe~~~l~~---------~~~~~l~~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 123 KRALLVVDEAQNLTP---------ELLEELRMLSNFQTDNAKLLQIFL-VGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCeEEEEECcccCCH---------HHHHHHHHHhCcccCCCCeEEEEE-cCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 379999999999832 122233333222111222222222 23332 22 12345788889999999
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+.++-.+++...+...+... ...++ +..++.|++.|.|.. +.|..+|..+...+...+...++.++++.
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~---------~~~~~-~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRD---------APVFS-EGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCC---------CCCcC-HHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 99999999999887532110 01122 356688999999985 56999999877777777888999999999
Q ss_pred HHHHH
Q psy4165 198 KVEDS 202 (242)
Q Consensus 198 a~~~~ 202 (242)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 98764
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=77.28 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCccc-------------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAP-------------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~-------------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
||+++|..+ +..++.++++++.. ++|..+. ..+....+.. +.+||+|||||..-
T Consensus 612 lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~-p~svvllDEieka~------- 681 (852)
T TIGR03345 612 TALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRK-PYSVVLLDEVEKAH------- 681 (852)
T ss_pred HHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhC-CCcEEEEechhhcC-------
Confidence 789999987 45788888766532 1122211 1122334444 37999999999762
Q ss_pred cchHHHHHHHHHHHHhccCC-----------CCeEEEEecCCcc-----------------------------cccHHHh
Q psy4165 66 ISESLRATLNAFLYRTGEQS-----------DKFMLVLASNTPQ-----------------------------QFDWAVN 105 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~~~-----------~~v~vI~tTn~~~-----------------------------~ld~al~ 105 (242)
. .+.+.|++-++... .+.++|+|||... .+.|+|+
T Consensus 682 --~---~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfl 756 (852)
T TIGR03345 682 --P---DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFL 756 (852)
T ss_pred --H---HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHh
Confidence 2 23444554453221 3578999988521 2567788
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC--CCHHHHHHHHH
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--LSGREIAKLGV 176 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--~s~adi~~lv~ 176 (242)
+|++ .|.|.+.+.++..+|+...+.++....... .++.+ .++ +..++.|++...+ |-++.|++++.
T Consensus 757 nRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~--~gi~l-~i~-d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 757 GRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKEN--HGAEL-VYS-EALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred ccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHh--cCceE-EEC-HHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 9998 899999999999999999987642211100 01111 122 3345778888533 45788888885
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-05 Score=72.87 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=90.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCc-ccccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTP-QQFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~-~~ld~al~~Rfd~~ 111 (242)
..||||||++.+-. .+.+.||..|+. ...++.+|+|+|.. ..+.++|+.||+..
T Consensus 127 ~GiL~lDEi~~l~~------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 127 RGILYIDEVNLLDD------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLC 194 (633)
T ss_pred CCeEEeChhhhCCH------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceE
Confidence 46999999999932 234445554431 12458999999854 36889999999999
Q ss_pred EEeCCC-CHHHHHHHHHHHHhccccchh-----------hhcc----cccccCCCCh-hHhHHHHHHhC--CCC-CHHHH
Q psy4165 112 VEFPLP-TLNERERLVRLYFDKFVLQPA-----------AQGK----RRLKVAPFDY-TSLCSKIAHVT--EGL-SGREI 171 (242)
Q Consensus 112 i~~~~P-~~~~R~~Il~~~l~~~~~~~~-----------~~~~----~~~~~~~~d~-~~~l~~la~~t--~g~-s~adi 171 (242)
|.++.| +.++|.+|++..+..- ..+. .... .+.....+.+ +..++.++..+ -|. +.+-.
T Consensus 195 i~v~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~ 273 (633)
T TIGR02442 195 VDVAAPRDPEERVEIIRRRLAFD-ADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRAD 273 (633)
T ss_pred EEccCCCchHHHHHHHHHHHhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 999988 4688889987654310 0000 0000 0000111222 11223344333 244 34444
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+++.|++.+.-..+..++.+|+..|+.-++..
T Consensus 274 i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 274 IVMARAARALAALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhh
Confidence 5677777777777788899999999999888754
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=6e-05 Score=70.03 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH--h--c------cCCCCeEEEEecCCcc-------------cccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR--T--G------EQSDKFMLVLASNTPQ-------------QFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l--~------~~~~~v~vI~tTn~~~-------------~ld~ 102 (242)
..+++|||+|.+- ...+..+.+.+.+ + . ..+.+..||+|+|... .|++
T Consensus 301 ~Gil~iDEi~~l~---------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~ 371 (509)
T smart00350 301 NGVCCIDEFDKMD---------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA 371 (509)
T ss_pred CCEEEEechhhCC---------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh
Confidence 5799999999983 2233333333321 0 0 1234678999999763 5999
Q ss_pred HHhcccccEEEe-CCCCHHHHHHHHHHHHhccccc-h--hhhcc----------------c--ccccCCCChhHhHHH--
Q psy4165 103 AVNDRLDEMVEF-PLPTLNERERLVRLYFDKFVLQ-P--AAQGK----------------R--RLKVAPFDYTSLCSK-- 158 (242)
Q Consensus 103 al~~Rfd~~i~~-~~P~~~~R~~Il~~~l~~~~~~-~--~~~~~----------------~--~~~~~~~d~~~~l~~-- 158 (242)
++++|||..+.+ ..|+.+...+|.++.+...... + ..... . ...+++--. ..+..
T Consensus 372 ~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~-~~i~~~y 450 (509)
T smart00350 372 PILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAA-EKLVKAY 450 (509)
T ss_pred HHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHH
Confidence 999999987665 6899999999999876432100 0 00000 0 001111000 00111
Q ss_pred HHHh----------CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 159 IAHV----------TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 159 la~~----------t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+..+ .-+.|++.+..+++-|+|.|....+..++.+|+..|++-+.
T Consensus 451 ~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 451 VDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 1112 12569999999999888888888889999999999987653
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.7e-06 Score=71.44 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=76.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---ccchHHHHH----HHHHHHHHhC-CCc--EEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---MGSSGVTAI----HKVFDWASSS-RKG--LVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---~~g~~e~~l----~~~f~~A~~~-~~p--~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||+++|..+|.+|+.+.+..-.. ..|...-.. ...|.....- -.. +|+|+|||+..- ...
T Consensus 58 ~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~---------p~~ 128 (329)
T COG0714 58 LLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP---------PEV 128 (329)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCC---------HHH
Confidence 589999999999999999875543 123221111 1111111100 001 399999999873 234
Q ss_pred HHHHHHHHHHh----ccCC-----CCeEEEEecC-----CcccccHHHhcccccEEEeCCC-CHHHHHHHHHHHH
Q psy4165 71 RATLNAFLYRT----GEQS-----DKFMLVLASN-----TPQQFDWAVNDRLDEMVEFPLP-TLNERERLVRLYF 130 (242)
Q Consensus 71 ~~~l~~lL~~l----~~~~-----~~v~vI~tTn-----~~~~ld~al~~Rfd~~i~~~~P-~~~~R~~Il~~~l 130 (242)
...+.+.|.+- .... .+.+||+|+| ....+++|+++||-..+++++| ..++...++....
T Consensus 129 q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 129 QNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred HHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 44444444442 1223 5678888889 7778999999999889999999 5555555555554
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=68.58 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=62.2
Q ss_pred CeEEEE-ecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC
Q psy4165 87 KFMLVL-ASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG 165 (242)
Q Consensus 87 ~v~vI~-tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g 165 (242)
.+++|+ ||+.++.++++|++||. .++|++++.++...|++.++.+.+. . ++ +..++.|+..+
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v----------~---ls-~eal~~L~~ys-- 385 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINV----------H---LA-AGVEELIARYT-- 385 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCC----------C---CC-HHHHHHHHHCC--
Confidence 356665 55778899999999997 6789999999999999999875321 1 11 23345566654
Q ss_pred CCHHHHHHHHHHHHHHHh------hhc--CCCccHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAY------ASE--DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~------~~~--~~~~~~~~~~~a~~~~ 202 (242)
+.++..-+++..+...+. +.. ...++.+++.+++...
T Consensus 386 ~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 386 IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 244444444432221111 011 1268888888887654
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=62.86 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc---cccHHHhccc
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rf 108 (242)
.+..+++.........||++||+|.|..+.+ ..+-.|+...+....+|.+|+.+|..+ .+||.+.++|
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l 180 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSL 180 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhcc
Confidence 3444444444444589999999999986543 344455544444466789999998774 7888888655
Q ss_pred -ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH---HHHHHHhh
Q psy4165 109 -DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV---AWQASAYA 184 (242)
Q Consensus 109 -d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~---~a~~~~~~ 184 (242)
...|.||+.+.+|-.+|++.-... .+....++ +..++-+|... +..++|.+..+. .|-..+..
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~-----------~~~~~~~~-~~vl~lia~~~-a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEE-----------GFSAGVID-DDVLKLIAALV-AAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHh-----------hccCCCcC-ccHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHHh
Confidence 456899999999999999998764 11111222 12223333322 233336665544 33333344
Q ss_pred hcCCCccHHHHHHHHHHH
Q psy4165 185 SEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 185 ~~~~~~~~~~~~~a~~~~ 202 (242)
...+.++.++..+|....
T Consensus 248 ~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 248 EGSRKVSEDHVREAQEEI 265 (366)
T ss_pred hCCCCcCHHHHHHHHHHh
Confidence 455689999999984433
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=68.34 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccE
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM 111 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~ 111 (242)
.+.+.|......++.-|++|||+|.+. ....+.||+.+++.+.+.++|..|+.++.+.|.+++|+ ..
T Consensus 128 ~l~~~l~~~~~~g~~rVviIDeAd~l~------------~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~ 194 (351)
T PRK09112 128 RVGHFLSQTSGDGNWRIVIIDPADDMN------------RNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QP 194 (351)
T ss_pred HHHHHhhhccccCCceEEEEEchhhcC------------HHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cE
Confidence 344444433223336899999999993 23457788888877777888888899999999999999 59
Q ss_pred EEeCCCCHHHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLY 129 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~ 129 (242)
+.|++|+.++-.++++..
T Consensus 195 i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 195 ISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEecCCCHHHHHHHHHHh
Confidence 999999999999999874
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00015 Score=64.87 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=88.3
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccc---cHHHhccc--ccEEEeCCCCHHH
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQF---DWAVNDRL--DEMVEFPLPTLNE 121 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~l---d~al~~Rf--d~~i~~~~P~~~~ 121 (242)
-+++||||+.+.++... .+..-..+|.+. ..++-+|+.+-..|..+ .|.|.+|| ...+++.+|+.+.
T Consensus 177 dlllIDDiq~l~gk~~~---qeefFh~FN~l~-----~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 177 DLLLIDDIQFLAGKERT---QEEFFHTFNALL-----ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred CeeeechHhHhcCChhH---HHHHHHHHHHHH-----hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 58999999999765322 122333333332 23334556555566655 48888887 4578889999999
Q ss_pred HHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 122 RERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 122 R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
|..||+......+. .++ +..+..+|.+.+ =+.+++..+++...+.+...+. .+|.+.+.+.+..
T Consensus 249 r~aiL~kka~~~~~----------~i~----~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~ 312 (408)
T COG0593 249 RLAILRKKAEDRGI----------EIP----DEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHhcCC----------CCC----HHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHH
Confidence 99999997665322 222 333477888876 5788888888743333333222 7888888888877
Q ss_pred HHHh
Q psy4165 202 SIRA 205 (242)
Q Consensus 202 ~~~~ 205 (242)
....
T Consensus 313 ~~~~ 316 (408)
T COG0593 313 LLRA 316 (408)
T ss_pred hhcc
Confidence 7654
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=8e-05 Score=73.18 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=94.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc------ch-----HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG------SS-----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~------g~-----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
+|++||..+ +.+++.++++.+.... |. +... ...+..+....+.+||||||+|.+-
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~--------- 683 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAH--------- 683 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCC---------
Confidence 789999876 4578888887764311 10 0000 1123333333324999999999772
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------------------------ccccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------------------------QQFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------------------------~~ld~al~~Rfd~~ 111 (242)
.. +.+.|++-+++. -.+.++|+|||.. ..+.|+|+.|+|..
T Consensus 684 ~~---v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~i 760 (857)
T PRK10865 684 PD---VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEV 760 (857)
T ss_pred HH---HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCee
Confidence 22 334444444311 1236788999873 12457888999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC----HHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS----GREIAKLGV 176 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s----~adi~~lv~ 176 (242)
+.|.+++.+...+|++.++.++...... .++.. .++ +..++.|+.. ||+ .+.|+++++
T Consensus 761 ivF~PL~~edl~~Iv~~~L~~l~~rl~~---~gi~l-~is-~~al~~L~~~--gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 761 VVFHPLGEQHIASIAQIQLQRLYKRLEE---RGYEI-HIS-DEALKLLSEN--GYDPVYGARPLKRAIQ 822 (857)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHh---CCCcC-cCC-HHHHHHHHHc--CCCccCChHHHHHHHH
Confidence 9999999999999999999764221100 11221 223 3344667765 554 668888775
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-05 Score=72.53 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=96.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc------chH-----HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG------SSG-----VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~------g~~-----e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
||+++|+.+ +.+++.++.+++.... |.. -.....+....+... .+||+|||+|..-
T Consensus 555 lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p-~~VvllDeieka~--------- 624 (821)
T CHL00095 555 LTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP-YTVVLFDEIEKAH--------- 624 (821)
T ss_pred HHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-CeEEEECChhhCC---------
Confidence 789999986 3578888877764210 110 001123444455442 5999999999873
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCccc-------------------------------------
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQ------------------------------------- 99 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~------------------------------------- 99 (242)
. .+.+.||+-+++. -.+.++|+|||....
T Consensus 625 ~---~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 625 P---DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred H---HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 2 2445555555421 245889999885321
Q ss_pred ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 100 FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 100 ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
+.|.|++|+|.+|.|.+.+.++..+|++..+.++...... .++.+. ++ +...+.|++.. ..|-++.|+.++.
T Consensus 702 f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~---~~i~l~-~~-~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 702 FRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE---QGIQLE-VT-ERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred cCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH---CCcEEE-EC-HHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 2356779999999999999999999999999864222110 111111 11 22346677761 2345677777774
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=64.72 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=95.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----hc------cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----TG------EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l~------~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
..+||+||++.+-+ .....+.+.+.. +. ..+.++++|+|.|..+ .+.++++.||...+.+
T Consensus 145 ~GiL~lDEInrL~~---------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l 215 (350)
T CHL00081 145 RGILYVDEVNLLDD---------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEI 215 (350)
T ss_pred CCEEEecChHhCCH---------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeec
Confidence 57999999999942 233333333322 00 1234678888888665 6999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhcc--ccchhhhc-------cc-----ccccCCCChh-H---hHHHHHHhCCCCCHHHHHHHH
Q psy4165 115 PLPT-LNERERLVRLYFDKF--VLQPAAQG-------KR-----RLKVAPFDYT-S---LCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 115 ~~P~-~~~R~~Il~~~l~~~--~~~~~~~~-------~~-----~~~~~~~d~~-~---~l~~la~~t~g~s~adi~~lv 175 (242)
..|+ .+.|.+|++.....- +....... .. .-.+..+.++ . -+-.++..+.--|++=--.++
T Consensus 216 ~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ 295 (350)
T CHL00081 216 RTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTN 295 (350)
T ss_pred CCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHH
Confidence 9997 699999999864311 00000000 00 0001222221 1 123455555434666666778
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|++.++-.++..++.+|+..+..-++.-
T Consensus 296 raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 296 RAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 888888888888999999999998887754
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.3e-05 Score=65.26 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=89.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCcc-cccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-QFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-~ld~al~~Rfd~~ 111 (242)
..+||+||++.+- .. +...++..|+. .+.++++|+|+|..+ .++++++.||...
T Consensus 129 ~GiL~lDEInrl~---------~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~ 196 (334)
T PRK13407 129 RGYLYIDEVNLLE---------DH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLS 196 (334)
T ss_pred CCeEEecChHhCC---------HH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceE
Confidence 3699999999983 22 33444444421 245688999988655 5899999999999
Q ss_pred EEeCCCCH-HHHHHHHHHHHhccc--cchh--hhcc----------cccccCCCChh-H---hHHHHHHhCC-CCCHHHH
Q psy4165 112 VEFPLPTL-NERERLVRLYFDKFV--LQPA--AQGK----------RRLKVAPFDYT-S---LCSKIAHVTE-GLSGREI 171 (242)
Q Consensus 112 i~~~~P~~-~~R~~Il~~~l~~~~--~~~~--~~~~----------~~~~~~~~d~~-~---~l~~la~~t~-g~s~adi 171 (242)
+.+++|.. ++|.+|++.....-. .... ...+ ..-.+..+-++ . -+-.++..+. .=.-++|
T Consensus 197 v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i 276 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGEL 276 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHH
Confidence 99999976 999999998643210 0000 0000 00001111111 1 1233444443 1234455
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
. +++.|++.+.-.++..++.+|+..+..-+.
T Consensus 277 ~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 277 T-LLRAARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred H-HHHHHHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 5 888788888888888999999987775554
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00053 Score=63.25 Aligned_cols=118 Identities=19% Similarity=0.334 Sum_probs=79.6
Q ss_pred HHHHHHHhCCC--cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEE
Q psy4165 35 KVFDWASSSRK--GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 35 ~~f~~A~~~~~--p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i 112 (242)
+.++..+...+ |+|+++.|++.++. .....+.+..+.......+.. +||.+. ...+|+.|.+ +-..+
T Consensus 69 ~al~~i~~~~~~~~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~~~~~-~i~~~~--~~~~p~el~~-~~~~~ 137 (489)
T CHL00195 69 QALEFIEKLTPETPALFLLKDFNRFLN-------DISISRKLRNLSRILKTQPKT-IIIIAS--ELNIPKELKD-LITVL 137 (489)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhc-------chHHHHHHHHHHHHHHhCCCE-EEEEcC--CCCCCHHHHh-ceeEE
Confidence 33344444332 79999999999983 123455555555555444433 444443 2567777755 44588
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
++|+|+.+++.++++.+.... +...+ +..++.+++.+.|+|-.++++++..
T Consensus 138 ~~~lP~~~ei~~~l~~~~~~~----------~~~~~----~~~~~~l~~~~~gls~~~~~~~~~~ 188 (489)
T CHL00195 138 EFPLPTESEIKKELTRLIKSL----------NIKID----SELLENLTRACQGLSLERIRRVLSK 188 (489)
T ss_pred eecCcCHHHHHHHHHHHHHhc----------CCCCC----HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998887532 22223 3445899999999999999999863
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-05 Score=66.91 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
.|-|++|||+|.+- ....+.||+.+++.++..++|.+|+.++.+.+.+++|+. .+.|++|+.++-.+
T Consensus 141 ~~kVviIDead~m~------------~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~ 207 (365)
T PRK07471 141 GWRVVIVDTADEMN------------ANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVID 207 (365)
T ss_pred CCEEEEEechHhcC------------HHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHH
Confidence 48999999999882 345678888898877788889999999999999999996 89999999999999
Q ss_pred HHHHHH
Q psy4165 125 LVRLYF 130 (242)
Q Consensus 125 Il~~~l 130 (242)
++....
T Consensus 208 ~L~~~~ 213 (365)
T PRK07471 208 ALAAAG 213 (365)
T ss_pred HHHHhc
Confidence 988764
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-05 Score=66.16 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=70.3
Q ss_pred ChHHHHHHhcCCcEEEEecC----CcccccchHHHHHH-HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGG----DVAPMGSSGVTAIH-KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~----~l~~~~g~~e~~l~-~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.||+++|..++.||+.++.. ++....+.. ..+. .-|-.|... +.+|+|||+|.+- ......++
T Consensus 134 tLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g~~~dgpLl~A~~~--GgvLiLDEId~a~---------p~vq~~L~ 201 (383)
T PHA02244 134 HIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-GKFHETPFYEAFKK--GGLFFIDEIDASI---------PEALIIIN 201 (383)
T ss_pred HHHHHHHHHhCCCEEEEecChHHHhhccccccc-ccccchHHHHHhhc--CCEEEEeCcCcCC---------HHHHHHHH
Confidence 37999999999999998842 111111000 0111 123333322 7999999999883 23344455
Q ss_pred HHHHH-----hc---cCCCCeEEEEecCCc-----------ccccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 76 AFLYR-----TG---EQSDKFMLVLASNTP-----------QQFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 76 ~lL~~-----l~---~~~~~v~vI~tTn~~-----------~~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
.++.. ++ ....++-+|+|+|.+ ..+++|++.||- .|+|+.|+. ....|.
T Consensus 202 ~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 202 SAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred HHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH-HHHHHh
Confidence 55532 11 123467899999973 678999999995 899999984 333444
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-05 Score=66.93 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCc
Q psy4165 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTP 97 (242)
Q Consensus 32 ~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~ 97 (242)
.-++....|.. -.||||||||.++.+.+.++..-....+...+|--++ -..+.|++|++. ..|
T Consensus 240 i~~eAi~~aE~---~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKP 316 (444)
T COG1220 240 IKQEAIDAAEQ---NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKP 316 (444)
T ss_pred HHHHHHHHHHh---cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCCh
Confidence 34444445553 3799999999999876533311112233445554442 124568999865 789
Q ss_pred ccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 98 QQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 98 ~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
.+|-|.|.|||...+++...+.+.-.+||..
T Consensus 317 SDLiPELQGRfPIRVEL~~Lt~~Df~rILte 347 (444)
T COG1220 317 SDLIPELQGRFPIRVELDALTKEDFERILTE 347 (444)
T ss_pred hhcChhhcCCCceEEEcccCCHHHHHHHHcC
Confidence 9999999999999999999999998888753
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.4e-05 Score=65.95 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHH
Q psy4165 84 QSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH 161 (242)
Q Consensus 84 ~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~ 161 (242)
.++.|++|||| |....|.+||++|. +.+++.+++.++-..+++..+...... +...+ .++ +..++.|+.
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~----~~~~~---~i~-~~al~~ia~ 75 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVL----AKHKF---KID-DGLYNAMHN 75 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhcc----CCcCC---CcC-HHHHHHHHH
Confidence 46779999977 89999999999999 599999999999999999999741100 00011 122 223344554
Q ss_pred hCCCCCHHHHHHHHHHHHHHHh-hhcCC--CccHHHHHHHHHHHHHhhhhhhhcccccCCCcccccCCCCCCC
Q psy4165 162 VTEGLSGREIAKLGVAWQASAY-ASEDG--VLTEAMVMSKVEDSIRAHKMKVRWQSEQESPESFMGVDKSSPS 231 (242)
Q Consensus 162 ~t~g~s~adi~~lv~~a~~~~~-~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 231 (242)
++++|.+..++..+.+.. ....+ .+|.+++.+.+++...... +.+...++...+.+.+..||.|.
T Consensus 76 ----~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yD-k~gd~HYd~iSAf~KSiRGSDpD 143 (300)
T PRK14700 76 ----YNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFH-REGKEFYEQLSAFHKSVRGTDPD 143 (300)
T ss_pred ----hcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhccc-CCcchhHHHHHHHHHHhhcCCcc
Confidence 567899999987777554 22222 3899999888876654433 44444555555555666666664
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.4e-05 Score=68.13 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=84.2
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHH--HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
||-.||..++.||+.+-.++-+..+.|+. ..++++|+-|.+.. -+||++|+|+.|..--.-+ ..-.+.++..|+.
T Consensus 554 LAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsiivvDdiErLiD~vpIG--PRfSN~vlQaL~V 630 (744)
T KOG0741|consen 554 LAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSIIVVDDIERLLDYVPIG--PRFSNLVLQALLV 630 (744)
T ss_pred HHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEEEEcchhhhhcccccC--chhhHHHHHHHHH
Confidence 67789999999999976554333333554 47999999999876 6999999999997422111 1112334445554
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHh-cccccEEEeCCCCH-HHHHHHHHH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVN-DRLDEMVEFPLPTL-NERERLVRL 128 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P~~-~~R~~Il~~ 128 (242)
.+. ....+.+|++||++.+-|...=+ ..|+..|++|.-+. ++-.+++..
T Consensus 631 llK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 631 LLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 453 33446889999988776654433 78999999987744 665555554
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=64.75 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+. ..++.-|++|||+|.+. ....+.||+.|++.++.+++|.+|+.+..|.|.+++|.
T Consensus 94 ~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc 161 (329)
T PRK08058 94 QIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC 161 (329)
T ss_pred HHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhc
Confidence 4555544443 12225799999999883 33568899999988888899999999999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~ 128 (242)
. .++|++|+.++-.+.++.
T Consensus 162 ~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 162 Q-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred e-eeeCCCCCHHHHHHHHHH
Confidence 6 899999999987666653
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=66.56 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+... ++--|++||++|.+. ...-|.||+.+++.+.++++|.+|++++.|.|.+++|
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 3556555544321 124699999999993 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
+. .+.|++|+.++..+.|...
T Consensus 183 cq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 183 CR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CE-EEEecCCCHHHHHHHHHHc
Confidence 95 9999999999988888763
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00046 Score=59.32 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-cCCCCeEEEEecCC--cccccHHHhccccc
Q psy4165 34 HKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNT--PQQFDWAVNDRLDE 110 (242)
Q Consensus 34 ~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-~~~~~v~vI~tTn~--~~~ld~al~~Rfd~ 110 (242)
..+...-+..+ +-+|+|||++.++... ...++.+..+|+.+. +..=.++.+||-.- .-.-|+.+.+||+
T Consensus 135 ~~~~~llr~~~-vrmLIIDE~H~lLaGs------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~- 206 (302)
T PF05621_consen 135 QQVLRLLRRLG-VRMLIIDEFHNLLAGS------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE- 206 (302)
T ss_pred HHHHHHHHHcC-CcEEEeechHHHhccc------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-
Confidence 33444555565 8999999999987532 223455556666664 33335666665422 2234677779998
Q ss_pred EEEeCCC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy4165 111 MVEFPLP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGV 189 (242)
Q Consensus 111 ~i~~~~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~ 189 (242)
.+.+|.. ..++-..++..+-..+++... +.+.-......|-..|+|.+| +|.++++.|...+...+...
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~---------S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKP---------SNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEER 276 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCC---------CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCce
Confidence 6677755 345556677777776665421 112212233678889998887 78888885555555556667
Q ss_pred ccHHHHHH
Q psy4165 190 LTEAMVMS 197 (242)
Q Consensus 190 ~~~~~~~~ 197 (242)
||.+.+..
T Consensus 277 It~~~l~~ 284 (302)
T PF05621_consen 277 ITREILDK 284 (302)
T ss_pred ecHHHHhh
Confidence 88877754
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=63.89 Aligned_cols=112 Identities=22% Similarity=0.250 Sum_probs=80.8
Q ss_pred hHHHHHHhcC------------------------CcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecc
Q psy4165 2 FAKKLAHHSG------------------------MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~~------------------------~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDei 54 (242)
+|.++|+++. -.++.+++++..... -....++++-+..... .+.-||+|||+
T Consensus 40 ~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidea 118 (325)
T COG0470 40 AALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEA 118 (325)
T ss_pred HHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcH
Confidence 5778888877 467888887765431 1223344433333222 23689999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
|.+.. ...+.++.-+.+++.+..+|.+||.++.|-+.+++|.. .+.|++|+...+....+
T Consensus 119 d~mt~------------~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 119 DKLTE------------DAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHhH------------HHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 99943 45688998898889899999999999999999999996 88998866655544444
|
|
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00034 Score=66.00 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=93.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh----C---CCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS----S---RKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~----~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
+||+.||+++|+.++.+++++-.+ ...+++....|-. . .+|..|+|||||--. ...
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt-----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------~~~ 403 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERT-----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------RAA 403 (877)
T ss_pred HHHHHHHHhcCceEEEeccccccc-----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------HHH
Confidence 489999999999999999998643 2233333332221 1 359999999999642 223
Q ss_pred HHHHHHHhc-------cCCC--------------CeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 74 LNAFLYRTG-------EQSD--------------KFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 74 l~~lL~~l~-------~~~~--------------~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
+..+|..+. ...+ .--+|+.+|.. .-|||+ +-|-..|.|.+|...--.+=|+...
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC 481 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEIC 481 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHH
Confidence 333333221 1111 13577778854 568998 6799999999998887776666655
Q ss_pred hccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 131 DKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
.+- +|. .|. ..|...|+ ++..||+..++..+..+..
T Consensus 482 ~rE----------~mr---~d~----~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 482 HRE----------NMR---ADS----KALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred hhh----------cCC---CCH----HHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 442 222 232 55666665 6678999999966554443
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00031 Score=61.21 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=78.3
Q ss_pred hHHHHHHhcCCc--------EEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGMD--------YAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~~--------~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|..+.|. ++.+.+.+ ++ .-+...++++.+.+... ++.-|++||++|.+.
T Consensus 42 la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~-~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------ 106 (313)
T PRK05564 42 LAKEIALKILGKSQQREYVDIIEFKPIN--KK-SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------ 106 (313)
T ss_pred HHHHHHHHHcCCCCCCCCCCeEEecccc--CC-CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------
Confidence 688888876542 23332210 11 01223466655544321 225799999998882
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
....+.||+.+++.+.++++|.+|+.++.|.|.+++|.. .++|++|+.++-...++..+
T Consensus 107 ~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 107 EQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHh
Confidence 234678999998888888888888889999999999996 99999999998877776554
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=62.17 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=57.9
Q ss_pred hHHHHHHhcCC----cEEEEecCCcccccchHHHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 2 FAKKLAHHSGM----DYAIMTGGDVAPMGSSGVTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 2 lA~aiA~e~~~----~~~~v~~~~l~~~~g~~e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
||+++|..+.. +++.++++.+.. .++.+..+..++..+ .... ..||||||||...+. .+...+-....+
T Consensus 19 la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~-~gVVllDEidKa~~~-~~~~~~v~~~~V 95 (171)
T PF07724_consen 19 LAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEE-GGVVLLDEIDKAHPS-NSGGADVSGEGV 95 (171)
T ss_dssp HHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHH-HTEEEEETGGGCSHT-TTTCSHHHHHHH
T ss_pred HHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccc-hhhhhhHHHhhcccc-ccccchhhHHHH
Confidence 79999999997 999999998876 111122233322211 1111 359999999999886 222212223355
Q ss_pred HHHHHHHhc------cC-----CCCeEEEEecCCcc
Q psy4165 74 LNAFLYRTG------EQ-----SDKFMLVLASNTPQ 98 (242)
Q Consensus 74 l~~lL~~l~------~~-----~~~v~vI~tTn~~~ 98 (242)
.+.||+-|+ .. -.++++|+|+|--.
T Consensus 96 ~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 96 QNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 667777663 11 23689999998644
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00023 Score=62.50 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHH---------------HHHHHHHHhCCCcEEEEEecccccccccC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAI---------------HKVFDWASSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l---------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
++|++|-... +.||+.++|+.+.... .+..+ ...|+.|. +..|||||||.+-
T Consensus 37 ~lAr~iH~~s~r~~~pfv~vnc~~~~~~~--l~~~lfG~~~g~~~ga~~~~~G~~~~a~----gGtL~Ldei~~L~---- 106 (329)
T TIGR02974 37 LIAARLHYLSKRWQGPLVKLNCAALSENL--LDSELFGHEAGAFTGAQKRHQGRFERAD----GGTLFLDELATAS---- 106 (329)
T ss_pred HHHHHHHHhcCccCCCeEEEeCCCCChHH--HHHHHhccccccccCcccccCCchhhCC----CCEEEeCChHhCC----
Confidence 3677776544 3699999998763211 01111 01122222 6899999999983
Q ss_pred CCccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCC--HHHHHH
Q psy4165 63 SETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPT--LNERER 124 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~--~~~R~~ 124 (242)
...+..+..+|..-. .....+-+|++||.. ..+.+.|..||. ..|++|+.. .++...
T Consensus 107 -----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~ 181 (329)
T TIGR02974 107 -----LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIML 181 (329)
T ss_pred -----HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHH
Confidence 333434444443211 112357888888753 245566667773 466666554 466677
Q ss_pred HHHHHHhcc
Q psy4165 125 LVRLYFDKF 133 (242)
Q Consensus 125 Il~~~l~~~ 133 (242)
++++|+.++
T Consensus 182 L~~~fl~~~ 190 (329)
T TIGR02974 182 LAEHFAIRM 190 (329)
T ss_pred HHHHHHHHH
Confidence 778887764
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=68.27 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=85.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh--c--c--------------CCCCeEEEEecCCc--ccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT--G--E--------------QSDKFMLVLASNTP--QQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l--~--~--------------~~~~v~vI~tTn~~--~~ld~al~ 105 (242)
..+|||||++.+- ...+..+..+|..= . . .+-.+.+|+++|.. ..+||.|+
T Consensus 218 gGtL~Ldei~~L~---------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 218 KGVLYIDEIKTMP---------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred CCEEEEEChHhCC---------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 5899999999994 22333333444321 0 1 11257889999864 57999999
Q ss_pred cccc---cEEEeC--CC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHH----HhCC-----CCCHHH
Q psy4165 106 DRLD---EMVEFP--LP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIA----HVTE-----GLSGRE 170 (242)
Q Consensus 106 ~Rfd---~~i~~~--~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la----~~t~-----g~s~ad 170 (242)
.||+ ..++|+ .| +.+.|.++.+.....+..+ + ....++ ...+..+. +..+ -.+.++
T Consensus 289 ~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~-------G-~l~~~s-~~Av~~Li~~~~R~ag~r~~lsl~~R~ 359 (608)
T TIGR00764 289 SRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKD-------G-RIPHFT-RDAVEEIVREAQRRAGRKDHLTLRLRE 359 (608)
T ss_pred HHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHh-------C-CCCcCC-HHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 9999 667664 34 5666766655544332111 0 011222 11122222 2211 145799
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 171 IAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 171 i~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
|.++++.|...+.......++.+|+.+|++.....
T Consensus 360 L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 360 LGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 99999976544444555689999999998877543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=52.50 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=71.8
Q ss_pred hHHHHHHhcCCc---EEEEecCCcccc---------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHSGMD---YAIMTGGDVAPM---------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~~~~---~~~v~~~~l~~~---------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+++++|..++.+ ++.++++..... .......++.++..++... |.||+|||++.+......
T Consensus 18 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viiiDei~~~~~~~~~ 96 (148)
T smart00382 18 LARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PDVLILDEITSLLDAEQE 96 (148)
T ss_pred HHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CCEEEEECCcccCCHHHH
Confidence 688899998885 888887754321 1356678889999999876 899999999999653221
Q ss_pred CccchHHHHHHHH----HHHHhccCCCCeEEEEecCC-cccccHHHhcccccEEEeCCC
Q psy4165 64 ETISESLRATLNA----FLYRTGEQSDKFMLVLASNT-PQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 64 ~~~~~~~~~~l~~----lL~~l~~~~~~v~vI~tTn~-~~~ld~al~~Rfd~~i~~~~P 117 (242)
. .... .............+|+++|. ....+..+..|++..+.++.|
T Consensus 97 ~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 97 A--------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred H--------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 1 1100 00111233455688888886 455555555799999988765
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00028 Score=61.53 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
--|++||++|.+. ...-|.||+.+++.+.++++|..|+.++.|-|.+++|.. .+.|++|+.++..+.
T Consensus 109 ~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 109 YRLFVIEPADAMN------------ESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQW 175 (319)
T ss_pred ceEEEecchhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHH
Confidence 4799999999993 345689999999999999999999999999999999997 889999999988877
Q ss_pred HHH
Q psy4165 126 VRL 128 (242)
Q Consensus 126 l~~ 128 (242)
+..
T Consensus 176 L~~ 178 (319)
T PRK06090 176 LKG 178 (319)
T ss_pred HHH
Confidence 654
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=54.79 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=60.5
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFM 89 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~ 89 (242)
.++.++...-.... ....++++...+.. .++.-|++|||+|.+ .....+.||+.|++++..++
T Consensus 69 d~~~~~~~~~~~~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 69 DFIIIKPDKKKKSI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp TEEEEETTTSSSSB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEE
T ss_pred ceEEEecccccchh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcCCCCCEE
Confidence 45666554432111 12344555444332 223689999999998 34567899999999999999
Q ss_pred EEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 90 LVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 90 vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
+|.+|+.++.|-|.+++|+. .+.|++.
T Consensus 135 fiL~t~~~~~il~TI~SRc~-~i~~~~l 161 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQ-VIRFRPL 161 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSE-EEEE---
T ss_pred EEEEECChHHChHHHHhhce-EEecCCC
Confidence 99999999999999999985 7777654
|
... |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00036 Score=60.91 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++--|++||++|.+. ....|.||+-|++.+.++++|.+|+.++.|-|.|++
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 34566665554432 123699999999993 345689999999998899999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
|+. .+.|++|+.++-.+.|..
T Consensus 163 RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hhe-EeeCCCcCHHHHHHHHHH
Confidence 997 889999999877766654
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00047 Score=60.30 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++-+.+.. .++--|++||++|.+. ...-|.||+-+++.+..+++|.+|+.++.|.|.+++|
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 345555444332 1224699999999983 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~ 129 (242)
.. .+.|++|+.++-.+.|...
T Consensus 158 C~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 158 CQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ce-EEeCCCCCHHHHHHHHHHH
Confidence 96 8899999999887777654
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=66.31 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=99.0
Q ss_pred hHHHHHHhcC---CcEEEEecCCccc-------------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAP-------------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~-------------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
||+++|..+. -.++.++.|++.. |+|-.+ ...+.+|-+.++.|||+||||+.-
T Consensus 537 LAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA-------- 605 (786)
T COG0542 537 LAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA-------- 605 (786)
T ss_pred HHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc--------
Confidence 7999999988 7899998777653 112111 122334444554699999999986
Q ss_pred cchHHHHHHHHHHHHhcc-----CC------CCeEEEEecCCcc----------------------------cccHHHhc
Q psy4165 66 ISESLRATLNAFLYRTGE-----QS------DKFMLVLASNTPQ----------------------------QFDWAVND 106 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~-----~~------~~v~vI~tTn~~~----------------------------~ld~al~~ 106 (242)
+ ..+++-||+-||. .. .+.++|+|||-=. .+.|.|+.
T Consensus 606 -H---pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 606 -H---PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred -C---HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 2 3467777777751 11 1378899987321 13466668
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGV 176 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~ 176 (242)
|+|.+|.|.+.+.+.-.+|+...+.++..... ..++.+.- + +...+.|+.+. +.|-++-|+++++
T Consensus 682 Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~---~~~i~l~~-s-~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 682 RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA---ERGITLEL-S-DEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred hcccEEeccCCCHHHHHHHHHHHHHHHHHHHH---hCCceEEE-C-HHHHHHHHHhccCCCcCchHHHHHHH
Confidence 99999999999999999999999987533321 01121111 0 12235566664 2356667777764
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00053 Score=60.32 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
--|++||++|.+. ...-|.||+-|++.+.+.++|.+|+.++.|.|.+++|.. .+.|++|+.++..+.
T Consensus 109 ~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 109 AKVVWLPDAALLT------------DAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTW 175 (334)
T ss_pred ceEEEEcchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHH
Confidence 5799999999983 345689999999999999999999999999999999998 689999999888777
Q ss_pred HHH
Q psy4165 126 VRL 128 (242)
Q Consensus 126 l~~ 128 (242)
|..
T Consensus 176 L~~ 178 (334)
T PRK07993 176 LSR 178 (334)
T ss_pred HHH
Confidence 754
|
|
| >KOG1514|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00043 Score=65.04 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh-----
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN----- 105 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~----- 105 (242)
..|..-|...+....||||+|||+|.|+.. .+.++-.|+.+....+.+++||+..|..+ |+..++
T Consensus 494 ~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------~QdVlYn~fdWpt~~~sKLvvi~IaNTmd-lPEr~l~nrvs 563 (767)
T KOG1514|consen 494 EALNFRFTVPKPKRSTTVVLIDELDILVTR---------SQDVLYNIFDWPTLKNSKLVVIAIANTMD-LPERLLMNRVS 563 (767)
T ss_pred HHHHHhhccCCCCCCCEEEEeccHHHHhcc---------cHHHHHHHhcCCcCCCCceEEEEeccccc-CHHHHhccchh
Confidence 345555554444556899999999999854 24466677777777788899999888755 566666
Q ss_pred cccc-cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh-
Q psy4165 106 DRLD-EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY- 183 (242)
Q Consensus 106 ~Rfd-~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~- 183 (242)
+|.+ ..|.|.+.+.++-++|+..-|..+ +.++ ...++-+|+.-.-.|| |.+....-..+++.
T Consensus 564 SRlg~tRi~F~pYth~qLq~Ii~~RL~~~--------------~~f~-~~aielvarkVAavSG-DaRraldic~RA~Ei 627 (767)
T KOG1514|consen 564 SRLGLTRICFQPYTHEQLQEIISARLKGL--------------DAFE-NKAIELVARKVAAVSG-DARRALDICRRAAEI 627 (767)
T ss_pred hhccceeeecCCCCHHHHHHHHHHhhcch--------------hhcc-hhHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 3532 478899999999999999998763 1111 1222334444433343 55554432233322
Q ss_pred hhcC---------CCccHHHHHHHHHHHHH
Q psy4165 184 ASED---------GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 184 ~~~~---------~~~~~~~~~~a~~~~~~ 204 (242)
+.++ ..++..++++|++....
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhh
Confidence 2111 25788999999888753
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0036 Score=52.10 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=101.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|+||+-++. |..+++|+..++ ..+-.+++..+...++-|||.||+ ++ +. +....+.+...|
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~dl--------~~Lp~l~~~Lr~~~~kFIlFcDDL-SF------e~-gd~~yK~LKs~L 164 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKEDL--------ATLPDLVELLRARPEKFILFCDDL-SF------EE-GDDAYKALKSAL 164 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHHHH--------hhHHHHHHHHhcCCceEEEEecCC-CC------CC-CchHHHHHHHHh
Confidence 567776664 356888887666 457777888887766899999986 22 11 233445555555
Q ss_pred HH-hccCCCCeEEEEecCCcccccHHH----------------------hcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 79 YR-TGEQSDKFMLVLASNTPQQFDWAV----------------------NDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 79 ~~-l~~~~~~v~vI~tTn~~~~ld~al----------------------~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
.. +...+.+|++-+|+|+-..|+.-+ ..||...+.|++|+.++-..|+..|.++.++
T Consensus 165 eG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 165 EGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred cCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC
Confidence 43 456778899999999987776322 1599999999999999999999999987544
Q ss_pred chhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 136 QPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 136 ~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+ .++-.+.....+-|..-.|-||+--...++
T Consensus 245 ~----------~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 245 D----------ISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred C----------CCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 3 222112222233444446778877776665
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=57.28 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=86.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC------------cccccHHHhcccccEEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT------------PQQFDWAVNDRLDEMVE 113 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~------------~~~ld~al~~Rfd~~i~ 113 (242)
|.||||||++-|- -..++-|-..|+..-.+ ++|++||+ |..||..|+.|.- +|.
T Consensus 292 pGVLFIDEvHmLD------------IE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRll-II~ 357 (450)
T COG1224 292 PGVLFIDEVHMLD------------IECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLL-IIS 357 (450)
T ss_pred cceEEEechhhhh------------HHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhee-EEe
Confidence 8999999998771 23334333345443334 67777774 8889999998884 888
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEA 193 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~ 193 (242)
..+.+.++.++|++.-.+.. ++.++ +..++.|+..-..-|-+---+|+.-+...+...+...+..+
T Consensus 358 t~py~~~EireIi~iRa~ee----------~i~l~----~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~ 423 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEE----------DIELS----DDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVE 423 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhh----------ccccC----HHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehh
Confidence 88889999999999987652 22222 33446677775444544444444323333333445588999
Q ss_pred HHHHHHHHHHHh
Q psy4165 194 MVMSKVEDSIRA 205 (242)
Q Consensus 194 ~~~~a~~~~~~~ 205 (242)
+++.+-+-+...
T Consensus 424 dVe~a~~lF~D~ 435 (450)
T COG1224 424 DVERAKELFLDV 435 (450)
T ss_pred HHHHHHHHHhhH
Confidence 999887776544
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=56.17 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++...+.. .++.-|++||++|.+. ...-|.||+.+++.+.++++|.+|+.++.|-|.+++|
T Consensus 87 dqIR~l~~~~~~~p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 87 DTIRELVKNFSQSGYEGKQQVFIIKDADKMH------------VNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc
Confidence 345554444332 2224799999999993 3456899999998888899999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~ 127 (242)
+. .|.|+. +.+.-.+++.
T Consensus 155 cq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 155 TQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ce-eeeCCC-cHHHHHHHHH
Confidence 96 888865 4554444443
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.3e-05 Score=56.37 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=55.4
Q ss_pred hHHHHHHhcCCcEEEEecCCcccc---cchHHH-HHH-----HHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPM---GSSGVT-AIH-----KVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~---~g~~e~-~l~-----~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
||+.+|+.++.+++.++++..... +|.-.- .-. ..+..+.. +++|++|||++.. ......
T Consensus 15 l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a---------~~~v~~ 83 (139)
T PF07728_consen 15 LARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA---------PPEVLE 83 (139)
T ss_dssp HHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG-----------HHHHH
T ss_pred HHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC---------CHHHHH
Confidence 789999999999999988775421 110000 000 00001111 3899999999987 223333
Q ss_pred HHHHHHHHh--c--------cCCC------CeEEEEecCCcc----cccHHHhccc
Q psy4165 73 TLNAFLYRT--G--------EQSD------KFMLVLASNTPQ----QFDWAVNDRL 108 (242)
Q Consensus 73 ~l~~lL~~l--~--------~~~~------~v~vI~tTn~~~----~ld~al~~Rf 108 (242)
.+..+|..- . .... ++.+|+|+|... .+++++++||
T Consensus 84 ~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 84 SLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp TTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 444444321 0 0111 389999999999 9999999998
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00081 Score=62.16 Aligned_cols=143 Identities=24% Similarity=0.225 Sum_probs=84.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecCCcc--------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASNTPQ-------------- 98 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~~-------------- 98 (242)
..+||+||++.+- . ..+..|+.-|+ ....++.+|+|+|...
T Consensus 295 gGvLfLDEi~e~~---------~---~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~ 362 (506)
T PRK09862 295 NGVLFLDELPEFE---------R---RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPE 362 (506)
T ss_pred CCEEecCCchhCC---------H---HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHH
Confidence 5899999998872 2 23344444332 1244689999999752
Q ss_pred -------cccHHHhcccccEEEeCCCCHH----------HHHHHHHHHHhccccchhhhcc--cccccCC----CChhH-
Q psy4165 99 -------QFDWAVNDRLDEMVEFPLPTLN----------ERERLVRLYFDKFVLQPAAQGK--RRLKVAP----FDYTS- 154 (242)
Q Consensus 99 -------~ld~al~~Rfd~~i~~~~P~~~----------~R~~Il~~~l~~~~~~~~~~~~--~~~~~~~----~d~~~- 154 (242)
.|..+++.|||..++++.|+.+ .+.+|-+.............+. ..+.... ..++.
T Consensus 363 ~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~ 442 (506)
T PRK09862 363 QTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESE 442 (506)
T ss_pred HHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHH
Confidence 4788999999999999988543 1222332222110000000000 0111000 00011
Q ss_pred ---hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 155 ---LCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 155 ---~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++... ..-|+|++-...+++.|++.+.-.....++.+|+.+|+.-
T Consensus 443 ~~~~l~~~~-~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 443 DARWLEETL-IHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 112222 3347999999999998887777788889999999999864
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=56.83 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=66.7
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++++.+.+.. .++.-|++||++|.+. ....|.||+.|++.+ +.++|..|+.++.|-|.+++|.
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc 174 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMN------------EAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC 174 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcC------------HHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc
Confidence 45555554442 2236899999999983 235678999998777 5678888889999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l 130 (242)
. .++|++|+.++-.++|+...
T Consensus 175 q-~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 175 Q-IIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred e-EEecCCCCHHHHHHHHHHhh
Confidence 6 99999999999998888764
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.002 Score=59.01 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=91.7
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHH---------------HHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDW---------------ASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~---------------A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|+++... .+.||+.++|+.+.... .-..+|-. ..... +..|||||+|.+-
T Consensus 173 ~A~~ih~~~~~~~~~~~~~~c~~~~~~~-----~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~ei~~l~----- 241 (463)
T TIGR01818 173 VARALHRHSPRANGPFIALNMAAIPKDL-----IESELFGHEKGAFTGANTRRQGRFEQAD-GGTLFLDEIGDMP----- 241 (463)
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHH-----HHHHhcCCCCCCCCCcccCCCCcEEECC-CCeEEEEchhhCC-----
Confidence 56777655 34699999998873211 01111110 01122 6789999999983
Q ss_pred CccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~I 125 (242)
......+..+|..-. .....+-+|+||+..- .+.+.|..|+. ..|++|+.. .++...+
T Consensus 242 ----~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l 317 (463)
T TIGR01818 242 ----LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRL 317 (463)
T ss_pred ----HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHH
Confidence 333334444443211 0112466788886532 34455555543 477777665 6778888
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC--CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL--SGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+++++..+.... +.....++ ...+..|... +| +.++|++++. .++.......++.+++...+
T Consensus 318 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~--~wpgNvreL~~~~~---~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 318 ARHFLALAAREL------DVEPKLLD-PEALERLKQL--RWPGNVRQLENLCR---WLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhC--CCCChHHHHHHHHH---HHHHhCCCCcccHHhchHHH
Confidence 888887653221 11112233 2233445444 44 3466666665 44444445677887775444
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00055 Score=59.01 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=56.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchH--HHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISES--LRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~~ 72 (242)
|||+.+|+.+++||-.-+++.|.. |+| +.|..+.+++..|.- .++..||||||||.+..+..+...... -..
T Consensus 112 lLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEG 191 (408)
T COG1219 112 LLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEG 191 (408)
T ss_pred HHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchH
Confidence 689999999999999999999975 557 456777777765431 112589999999999987654431111 123
Q ss_pred HHHHHHHHh
Q psy4165 73 TLNAFLYRT 81 (242)
Q Consensus 73 ~l~~lL~~l 81 (242)
+...||+-+
T Consensus 192 VQQALLKii 200 (408)
T COG1219 192 VQQALLKII 200 (408)
T ss_pred HHHHHHHHH
Confidence 445566655
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=57.95 Aligned_cols=143 Identities=19% Similarity=0.114 Sum_probs=82.8
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCC----------CCeEEEEecCCccc---ccHHHhcccccEEE
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQS----------DKFMLVLASNTPQQ---FDWAVNDRLDEMVE 113 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~----------~~v~vI~tTn~~~~---ld~al~~Rfd~~i~ 113 (242)
.+||+|||..+. ....+.||..|.+.. ...++++|||.... ..+++..||-..+.
T Consensus 109 ~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~ 176 (498)
T PRK13531 109 EIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLW 176 (498)
T ss_pred cEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEE
Confidence 499999997552 235566666662111 12455666674322 22488899999999
Q ss_pred eCCCC-HHHHHHHHHHHHhc--ccc--chhhhccc--cc--ccCCCChh-H---hHHHHHHh---CC---CCCHHHHHHH
Q psy4165 114 FPLPT-LNERERLVRLYFDK--FVL--QPAAQGKR--RL--KVAPFDYT-S---LCSKIAHV---TE---GLSGREIAKL 174 (242)
Q Consensus 114 ~~~P~-~~~R~~Il~~~l~~--~~~--~~~~~~~~--~~--~~~~~d~~-~---~l~~la~~---t~---g~s~adi~~l 174 (242)
+|+|+ .++-.+|+...... .+. .+..+... .+ ....+.++ . -+-.|... +. ..|++--..+
T Consensus 177 vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l 256 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKA 256 (498)
T ss_pred CCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHH
Confidence 99997 56667787764221 001 00000000 00 01112211 1 12233332 22 2799999999
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 175 GVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 175 v~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++.+++.|+-.++..++.+|+. .+..+
T Consensus 257 ~~~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 257 IRLLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 9988999998999999999988 44444
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0026 Score=55.12 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=59.3
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
+.-|++||++|.+. ....+.||+.+++.+..+++|.+|+.+..|-|.+++|.. .++|++|+.++-.+
T Consensus 90 ~~KvvII~~~e~m~------------~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l~~ 156 (299)
T PRK07132 90 QKKILIIKNIEKTS------------NSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKILA 156 (299)
T ss_pred CceEEEEecccccC------------HHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHHHH
Confidence 36899999998872 235678999999888888999888899999999999996 89999999888776
Q ss_pred HHHH
Q psy4165 125 LVRL 128 (242)
Q Consensus 125 Il~~ 128 (242)
.|..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG2227|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0019 Score=58.37 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=77.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc------ccccEEEeCCCC
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND------RLDEMVEFPLPT 118 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~------Rfd~~i~~~~P~ 118 (242)
.|-|+++||+|.|+.+++. ++-++..+-.-.+.++++||.+|..+.-|..|-+ --...+.|++.+
T Consensus 256 ~~~llVlDEmD~L~tr~~~---------vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYT 326 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQT---------VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYT 326 (529)
T ss_pred ceEEEEechhhHHhhcccc---------eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCC
Confidence 3899999999999843221 2222222223566789999999998877766651 235689999999
Q ss_pred HHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 119 LNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 119 ~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.++..+||+.-+...+.. ......++-.|+...|.|| |++.++.
T Consensus 327 k~qI~~Il~~rl~~~~t~-------------~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 327 KDQIVEILQQRLSEESTS-------------IFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred HHHHHHHHHHHHhccccc-------------ccchHHHHHHHHHhccCch-hHHHHHH
Confidence 999999999998764322 1124466788999998887 8888765
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0008 Score=61.04 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhC-CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------------------cCCCCe
Q psy4165 32 AIHKVFDWASSS-RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------------------EQSDKF 88 (242)
Q Consensus 32 ~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------------------~~~~~v 88 (242)
.+.++...|+.. ..|+|||||||+.--..+ ++..+++.|+ ..+.++
T Consensus 258 ~f~~~~~~A~~~p~~~~vliIDEINRani~k-----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl 326 (459)
T PRK11331 258 IFYNFCQQAKEQPEKKYVFIIDEINRANLSK-----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENV 326 (459)
T ss_pred hHHHHHHHHHhcccCCcEEEEehhhccCHHH-----------hhhhhhhhccccccccccceeeeccccccccccCCCCe
Confidence 345566677654 248999999999764322 2223222221 224569
Q ss_pred EEEEecCCcc----cccHHHhcccccEEEeCC
Q psy4165 89 MLVLASNTPQ----QFDWAVNDRLDEMVEFPL 116 (242)
Q Consensus 89 ~vI~tTn~~~----~ld~al~~Rfd~~i~~~~ 116 (242)
.+|||+|..+ .+|.|+++||. .|++.+
T Consensus 327 ~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 327 YIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred EEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 9999999998 89999999996 677775
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00054 Score=61.25 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=74.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCc-----cchH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSET-----ISES 69 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~-----~~~~ 69 (242)
|||+.||+-+++||...+|+.+.. |+| +.|..|.+++..|.-+ ++..|+||||+|.+.....+-+ ..+.
T Consensus 241 llaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEG 320 (564)
T KOG0745|consen 241 LLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEG 320 (564)
T ss_pred HHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchh
Confidence 689999999999999999999974 556 6688899998876421 1258999999999985433222 1222
Q ss_pred HHHHHHHHHHHhc-------------cCCCCeEEEEecCCc-------ccccHHHhcc-cccEEEeCCCC
Q psy4165 70 LRATLNAFLYRTG-------------EQSDKFMLVLASNTP-------QQFDWAVNDR-LDEMVEFPLPT 118 (242)
Q Consensus 70 ~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~-------~~ld~al~~R-fd~~i~~~~P~ 118 (242)
.+ ..||+-++ ...+..+.|-|||-. -.||.-+.+| =|..+-|+.|+
T Consensus 321 VQ---QaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 321 VQ---QALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred HH---HHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 33 34444442 112223444444332 3567666655 46677788883
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0028 Score=57.69 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=83.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|+++.... +.||+.++|..+... ..-..+|-.++ ..+.+..|||||+|.+-
T Consensus 173 lA~~ih~~s~r~~~~f~~i~c~~~~~~-----~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~------ 241 (444)
T PRK15115 173 LAQAIHNASPRASKPFIAINCGALPEQ-----LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP------ 241 (444)
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCCCHH-----HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC------
Confidence 677776653 479999999887321 11112232111 01125789999999984
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCHHHHH----H
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTLNERE----R 124 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~~~R~----~ 124 (242)
...+..+..+|..-. .....+-+|+||+. +++..+. ++|.. .+.+..|...+|. .
T Consensus 242 ---~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~ 316 (444)
T PRK15115 242 ---APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPL 316 (444)
T ss_pred ---HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHH
Confidence 223333333433211 01125788888885 3555555 55511 3445555555654 3
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
|+++++.++.... +.....++ ...+..|....=--+.++|++++ +.++.....+.++.+++.
T Consensus 317 l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~WpgNvreL~~~i---~~~~~~~~~~~i~~~~l~ 378 (444)
T PRK15115 317 LANHLLRQAAERH------KPFVRAFS-TDAMKRLMTASWPGNVRQLVNVI---EQCVALTSSPVISDALVE 378 (444)
T ss_pred HHHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhCCCCChHHHHHHHH---HHHHHhCCCCccChhhhh
Confidence 5677776542211 11111223 22234444432112444555555 444444445566666654
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0034 Score=58.73 Aligned_cols=171 Identities=17% Similarity=0.136 Sum_probs=88.7
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|.... +.||+.++|+.+.... .-..+|-..+ ..+.+..|||||||.+-
T Consensus 234 ~lA~~ih~~s~r~~~pfv~i~c~~~~~~~-----~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~----- 303 (534)
T TIGR01817 234 LIAKAIHYLSPRAKRPFVKVNCAALSETL-----LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS----- 303 (534)
T ss_pred HHHHHHHHhCCCCCCCeEEeecCCCCHHH-----HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-----
Confidence 4788888764 4699999998873211 0111221100 01125789999999993
Q ss_pred CccchHHHHHHHHHHHHhc--cC------CCCeEEEEecCCcc-------cccHHHhccc-ccEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG--EQ------SDKFMLVLASNTPQ-------QFDWAVNDRL-DEMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--~~------~~~v~vI~tTn~~~-------~ld~al~~Rf-d~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..-. .. ...+-+|+||+..- .+.+.|..|+ ...|++|+.. .++...|
T Consensus 304 ----~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L 379 (534)
T TIGR01817 304 ----PAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLL 379 (534)
T ss_pred ----HHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHH
Confidence 223333333332210 00 12467888887531 2233333344 3456666554 4667788
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
+++++.++.... +.+ -.++ ...+..|....=--+.++|++++. .++.....+.|+.+++-
T Consensus 380 ~~~~l~~~~~~~------~~~-~~~s-~~a~~~L~~~~WPGNvrEL~~v~~---~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 380 AEAFLEKFNREN------GRP-LTIT-PSAIRVLMSCKWPGNVRELENCLE---RTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHc------CCC-CCCC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHCc
Confidence 888887643221 111 1232 223344444421124556666664 44444455678887764
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0017 Score=54.11 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=71.4
Q ss_pred HHHHHHHHHHH---hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWAS---SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~---~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..+|++-..+. ..++.-|++|+++|.+. ....+.||+-+++.+.++++|..|..+..|.|-+++|
T Consensus 72 dqIReL~~~l~~~p~~g~~KViII~~ae~mt------------~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSR 139 (263)
T PRK06581 72 EQIRKLQDFLSKTSAISGYKVAIIYSAELMN------------LNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139 (263)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEEechHHhC------------HHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhc
Confidence 34454444333 22235799999999993 3456899999999999999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+. .+.|+.|....-.+.+..++...
T Consensus 140 Cq-~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 140 CF-KINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred eE-EEeCCCCCHHHHHHHHHHhcccc
Confidence 96 89999999988888888877654
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=49.31 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-ccCCC--CeEEEEecC-CcccccHHHh
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GEQSD--KFMLVLASN-TPQQFDWAVN 105 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~~~~--~v~vI~tTn-~~~~ld~al~ 105 (242)
++.-+.+....++..+|.++++||.+.+... .-..+. ++..+ +..++ +|++||=.. ++.---+.+.
T Consensus 116 e~~~~~L~al~~~g~r~v~l~vdEah~L~~~---------~le~Lr-ll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~ 185 (269)
T COG3267 116 EQIDRELAALVKKGKRPVVLMVDEAHDLNDS---------ALEALR-LLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLR 185 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEeehhHhhhChh---------HHHHHH-HHHhhcccccCceeeeecCCcccchhhchHHHH
Confidence 4455555666666666899999999998531 222222 22233 23333 367776431 1111122333
Q ss_pred ---cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 106 ---DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 106 ---~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
.|++..|++++-+.++-...+++.|+.-+.. .+=++ +..+..+...+.| .|.-|.++|..|.-++
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~----------~~l~~-~~a~~~i~~~sqg-~P~lin~~~~~Al~~a 253 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLP----------EPLFS-DDALLLIHEASQG-IPRLINNLATLALDAA 253 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCC----------cccCC-hhHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence 6999889999999999999999999763111 11122 4455778888888 7899999999888888
Q ss_pred hhhcCCCccHHHH
Q psy4165 183 YASEDGVLTEAMV 195 (242)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (242)
+...++.++...+
T Consensus 254 ~~a~~~~v~~a~~ 266 (269)
T COG3267 254 YSAGEDGVSEAEI 266 (269)
T ss_pred HHcCCCccchhhc
Confidence 8888877776654
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=60.16 Aligned_cols=172 Identities=11% Similarity=0.103 Sum_probs=85.5
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHHHHH-----------HhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVFDWA-----------SSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f~~A-----------~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|++|-..+. .||+.++|+.+-. +..-.++|-.. -..+.+..|||||||.+-
T Consensus 363 ~~A~~ih~~s~r~~~pfv~vnc~~~~~-----~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-------- 429 (638)
T PRK11388 363 LLAQAIHNESERAAGPYIAVNCQLYPD-----EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-------- 429 (638)
T ss_pred HHHHHHHHhCCccCCCeEEEECCCCCh-----HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------
Confidence 47888877644 6999999988732 11112233211 001126889999999983
Q ss_pred chHHHHHHHHHHHHhc--cCC------CCeEEEEecCCcccccHHHh-ccc---------ccEEEeCCCC--HHHHHHHH
Q psy4165 67 SESLRATLNAFLYRTG--EQS------DKFMLVLASNTPQQFDWAVN-DRL---------DEMVEFPLPT--LNERERLV 126 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~--~~~------~~v~vI~tTn~~~~ld~al~-~Rf---------d~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|..=. ..+ -.+-+|+|||.. +...+. ++| ...|++|+.. .++...++
T Consensus 430 -~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~ 506 (638)
T PRK11388 430 -PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV 506 (638)
T ss_pred -HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHH
Confidence 333434444442210 001 146788888853 222222 444 3344444431 14455677
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+.++.++.... +... .+. ...+..|....=--+.++|++++. .++.....+.++.+++-..+
T Consensus 507 ~~~l~~~~~~~------~~~~-~~s-~~a~~~L~~y~WPGNvreL~~~l~---~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 507 NNKLRSLEKRF------STRL-KID-DDALARLVSYRWPGNDFELRSVIE---NLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHHHh------CCCC-CcC-HHHHHHHHcCCCCChHHHHHHHHH---HHHHhCCCCeecHHHCchhh
Confidence 77877642211 1111 122 222233433321124455555554 44433445577777765544
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0065 Score=57.31 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=105.2
Q ss_pred hHHHHHHhcC--CcEEEEecCCccc-ccc--hHHHHHHH---HHH---HHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAP-MGS--SGVTAIHK---VFD---WASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~-~~g--~~e~~l~~---~f~---~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++++++.-+. +||..+..+.-.. .+| +-+..|+. +|+ .+..+ ..|||+||+..+-
T Consensus 41 ~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah--~GvL~lDe~n~~~------------ 106 (584)
T PRK13406 41 WLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD--GGVLVLAMAERLE------------ 106 (584)
T ss_pred HHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc--CCEEEecCcccCC------------
Confidence 5667776654 4777765443322 122 22333211 111 11222 4799999998883
Q ss_pred HHHHHHHHHHhcc-------------CCCCeEEEEecCCc---ccccHHHhcccccEEEeCCCCHHHHH-------HHHH
Q psy4165 71 RATLNAFLYRTGE-------------QSDKFMLVLASNTP---QQFDWAVNDRLDEMVEFPLPTLNERE-------RLVR 127 (242)
Q Consensus 71 ~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~---~~ld~al~~Rfd~~i~~~~P~~~~R~-------~Il~ 127 (242)
..++..|+.-|+. +..++++|+|-|.. ..|+++++.||+..+.++.|+..+-. +|.+
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~ 186 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAA 186 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHH
Confidence 3466777777742 23467888864322 45999999999999999998765432 2221
Q ss_pred HHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCC-CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 128 LYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGL-SGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~-s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..- .+ .+..++ +..+..++..+ -|. |.+---.+++.|++.+.-.++..++.+|+.+++.-++.
T Consensus 187 AR~-rl---------~~v~v~----~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 187 ARA-RL---------PAVGPP----PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLA 252 (584)
T ss_pred HHH-HH---------ccCCCC----HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 111 00 011122 22223333322 255 77777778887777777788889999999999988875
Q ss_pred hhh
Q psy4165 205 AHK 207 (242)
Q Consensus 205 ~~~ 207 (242)
...
T Consensus 253 hR~ 255 (584)
T PRK13406 253 PRA 255 (584)
T ss_pred hhc
Confidence 433
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=56.86 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=80.0
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHH-HHHHH---------------HhCCCcEEEEEecccccccccC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHK-VFDWA---------------SSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~-~f~~A---------------~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
+|+++-.. .+.||+.++|+.+.. ..+.. +|... .... +..|||||||.+..
T Consensus 178 ~a~~ih~~s~~~~~~~i~~~c~~~~~------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~ldei~~l~~--- 247 (441)
T PRK10365 178 VARAIHASSARSEKPLVTLNCAALNE------SLLESELFGHEKGAFTGADKRREGRFVEAD-GGTLFLDEIGDISP--- 247 (441)
T ss_pred HHHHHHHcCCCCCCCeeeeeCCCCCH------HHHHHHhcCCCCCCcCCCCcCCCCceeECC-CCEEEEeccccCCH---
Confidence 56666543 346999999987632 11211 22110 1122 68899999999943
Q ss_pred CCccchHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCHH---
Q psy4165 63 SETISESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTLN--- 120 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~~--- 120 (242)
..+ ..++..++.. ...+-+|+||+.. +...+. ++|.. .+.+..|...
T Consensus 248 ------~~q---~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 248 ------MMQ---VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD--LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred ------HHH---HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC--HHHHHHcCCchHHHHHHhccceecCCChhhcc
Confidence 222 3333333211 1235678777653 222222 55522 3444445444
Q ss_pred -HHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 121 -ERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 121 -~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
+...+++.++.++.... +.....++ ...+..|... .| |++++.|-+..+.++.......++.+++..
T Consensus 317 ~Di~~l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~--~w-pgN~reL~~~~~~~~~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 317 EDIPLLAGHFLQRFAERN------RKAVKGFT-PQAMDLLIHY--DW-PGNIRELENAVERAVVLLTGEYISERELPL 384 (441)
T ss_pred hhHHHHHHHHHHHHHHHh------CCCCCCcC-HHHHHHHHhC--CC-CCHHHHHHHHHHHHHHhCCCCccchHhCch
Confidence 44557777776542211 11111122 2222333333 22 444444444334444444555677666643
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0065 Score=56.31 Aligned_cols=144 Identities=20% Similarity=0.205 Sum_probs=82.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH--h--c------cCCCCeEEEEecCCc-----c------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR--T--G------EQSDKFMLVLASNTP-----Q------------ 98 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~--l--~------~~~~~v~vI~tTn~~-----~------------ 98 (242)
..+|||||++.+- ......+.+.|.. + . ....++.+|++||.- .
T Consensus 296 ~GvLfLDEi~e~~---------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~ 366 (499)
T TIGR00368 296 NGVLFLDELPEFK---------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQ 366 (499)
T ss_pred CCeEecCChhhCC---------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHH
Confidence 5899999999873 2233333333321 0 0 123468899999852 1
Q ss_pred ------cccHHHhcccccEEEeCCCCHHH-------------HHHHHHHHHh---ccc------cchhhhcc---ccccc
Q psy4165 99 ------QFDWAVNDRLDEMVEFPLPTLNE-------------RERLVRLYFD---KFV------LQPAAQGK---RRLKV 147 (242)
Q Consensus 99 ------~ld~al~~Rfd~~i~~~~P~~~~-------------R~~Il~~~l~---~~~------~~~~~~~~---~~~~~ 147 (242)
.|...|+.|||..++++.++.++ |.++.+..-. ++. .+..-.+. ....+
T Consensus 367 ~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l 446 (499)
T TIGR00368 367 ISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKL 446 (499)
T ss_pred HHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCC
Confidence 58899999999999999775432 2333322111 110 00000000 00001
Q ss_pred CCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
++ .....++....+. ++|.+-...+++-|...+--.....++.+|+.+|+.
T Consensus 447 ~~-~~~~~l~~a~~~~-~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 447 SA-IDANDLEGALNKL-GLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CH-HHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11 0011233444443 589999999999776666666777899999999874
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.033 Score=47.46 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=91.2
Q ss_pred EEEecCCcccccchHHHHHHHHHHHHHhCC--------CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 15 AIMTGGDVAPMGSSGVTAIHKVFDWASSSR--------KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 15 ~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~--------~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
+++++++...+ ..-.++++..+..+.. .=-+++|-|.|.+.. .....|=.-|+.+.+
T Consensus 92 lEitPSDaG~~---DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------------dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNY---DRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------------DAQHALRRTMEKYSS 156 (351)
T ss_pred EEeChhhcCcc---cHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------------HHHHHHHHHHHHHhc
Confidence 45666665332 2334566655444332 126899999999943 222334444667788
Q ss_pred CeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC
Q psy4165 87 KFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL 166 (242)
Q Consensus 87 ~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~ 166 (242)
.+-+|...|....|-+++++|.- .|.+|.|+.++...++...+++-++. +. ...+..+|+.
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~----------lp----~~~l~rIa~k---- 217 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQ----------LP----KELLKRIAEK---- 217 (351)
T ss_pred CceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhccc----------Cc----HHHHHHHHHH----
Confidence 88899999999999999998874 89999999999999999999874332 22 2234667766
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy4165 167 SGREIAKLGVAWQASAY 183 (242)
Q Consensus 167 s~adi~~lv~~a~~~~~ 183 (242)
|+++++..+-..++...
T Consensus 218 S~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 218 SNRNLRRALLMLEAVRV 234 (351)
T ss_pred hcccHHHHHHHHHHHHh
Confidence 66788877654444443
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0032 Score=57.42 Aligned_cols=165 Identities=17% Similarity=0.261 Sum_probs=85.9
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHH-HHHHHH-------h-------CCCcEEEEEecccccccccC
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHK-VFDWAS-------S-------SRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~-~f~~A~-------~-------~~~p~Il~iDeiD~l~~~r~ 62 (242)
++||+|=.... -||+.++|+.+-. ..+.. +|-..+ . .+.+..||+|||..+-
T Consensus 179 lvAr~IH~~S~R~~~PFVavNcaAip~------~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp---- 248 (464)
T COG2204 179 LVARAIHQASPRAKGPFIAVNCAAIPE------NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP---- 248 (464)
T ss_pred HHHHHHHhhCcccCCCceeeecccCCH------HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC----
Confidence 46777766654 4999999988742 11211 232111 1 1126899999998873
Q ss_pred CCccchHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcccccHHHh-cccc-------cEEEeCCCCH----HHH
Q psy4165 63 SETISESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQQFDWAVN-DRLD-------EMVEFPLPTL----NER 122 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd-------~~i~~~~P~~----~~R 122 (242)
-..+.-+..+|++= + ..+-.|=||++||+ +|...+. |+|- .++.+..|.. ++.
T Consensus 249 -----l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI 321 (464)
T COG2204 249 -----LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI 321 (464)
T ss_pred -----HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHHHcCCcHHHHHhhhccceecCCcccccchhH
Confidence 33333333333321 1 11224779999996 4555555 5552 1455555644 444
Q ss_pred HHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC-CC--CHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 123 ERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE-GL--SGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 123 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~-g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
--++++|+.+..... +.....++- +.++..+. .| +.++|+|++ +.++.-.....++.+++
T Consensus 322 p~L~~hfl~~~~~~~------~~~~~~~s~----~a~~~L~~y~WPGNVREL~N~v---er~~il~~~~~i~~~~l 384 (464)
T COG2204 322 PLLAEHFLKRFAAEL------GRPPKGFSP----EALAALLAYDWPGNVRELENVV---ERAVILSEGPEIEVEDL 384 (464)
T ss_pred HHHHHHHHHHHHHHc------CCCCCCCCH----HHHHHHHhCCCChHHHHHHHHH---HHHHhcCCccccchhhc
Confidence 557777777653321 222333442 34444443 22 345555555 44444444444444443
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.008 Score=51.52 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHHH-hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC----------
Q psy4165 27 SSGVTAIHKVFDWAS-SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN---------- 95 (242)
Q Consensus 27 g~~e~~l~~~f~~A~-~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn---------- 95 (242)
|+..+.+.+..++.- +.- |.||||||++-| .-..++.|-..++..-.+ +||++||
T Consensus 278 ~eiNkvVn~Yid~GvAElv-PGVLFIDEVhML------------DiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~ 343 (456)
T KOG1942|consen 278 GEINKVVNKYIDQGVAELV-PGVLFIDEVHML------------DIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTE 343 (456)
T ss_pred HHHHHHHHHHHhcchhhhc-CcceEeeehhhh------------hhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCc
Confidence 344444444444322 233 999999999877 233455555555544444 5566666
Q ss_pred ---CcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHH
Q psy4165 96 ---TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172 (242)
Q Consensus 96 ---~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~ 172 (242)
.|..+++.++.|.- +|..-+.+.++-++|++.-.+-- ++.+++ ..+..++..-..-|-+-.-
T Consensus 344 d~~sPhGip~dllDRl~-Iirt~~y~~~e~r~Ii~~Ra~~E----------~l~~~e----~a~~~l~~~gt~tsLRy~v 408 (456)
T KOG1942|consen 344 DILSPHGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIRAQVE----------GLQVEE----EALDLLAEIGTSTSLRYAV 408 (456)
T ss_pred CCCCCCCCCHHHhhhee-EEeeccCCHHHHHHHHHHHHhhh----------cceecH----HHHHHHHhhccchhHHHHH
Confidence 47789999998885 66666667778888888776542 222222 2224455553323333333
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 173 KLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 173 ~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|+.-+...+-...+..+..+++++.-.-+.
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 3332222223334455677777777655554
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0047 Score=54.19 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++.+.+... ++.-|++||++|.+- ....+.||+.+++...++.+|.+|+.++.+.+.+.+
T Consensus 95 id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 95 IDAVREIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH
Confidence 45567766666532 224689999999983 234566777776555567788899999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
|+. .+.|++|+.++-.+.|+.
T Consensus 163 Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhh-hhcCCCCCHHHHHHHHHh
Confidence 996 889999999987776654
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=54.03 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccchHHHHHHHHHHHHH--------------hCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS--------------SSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~--------------~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|+++... .+.||+.++|..+... ..-..+|-..+ ..+.+.+|||||+|.+-.
T Consensus 182 lA~~ih~~s~~~~~~~~~i~c~~~~~~-----~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~----- 251 (457)
T PRK11361 182 IARAIHYNSRRAKGPFIKVNCAALPES-----LLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL----- 251 (457)
T ss_pred HHHHHHHhCCCCCCCeEEEECCCCCHH-----HHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH-----
Confidence 67777554 4469999999887321 11111221100 011257899999999942
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccccEEEeCCCCHHHHH----HH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLDEMVEFPLPTLNERE----RL 125 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd~~i~~~~P~~~~R~----~I 125 (242)
.....+..+|..-. ....++-+|+|||..- .+.+.+.-|+. .+.+..|...+|. .+
T Consensus 252 ----~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l 326 (457)
T PRK11361 252 ----VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLL 326 (457)
T ss_pred ----HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHH
Confidence 23333333332211 0112478889888542 23344444443 3555656555554 46
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+..++.++.... +.....++ ...+..|....=--+.++|++++. .++.....+.++.+++-..
T Consensus 327 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNv~eL~~~~~---~~~~~~~~~~i~~~~l~~~ 389 (457)
T PRK11361 327 ANHFLQKFSSEN------QRDIIDID-PMAMSLLTAWSWPGNIRELSNVIE---RAVVMNSGPIIFSEDLPPQ 389 (457)
T ss_pred HHHHHHHHHHHc------CCCCCCcC-HHHHHHHHcCCCCCcHHHHHHHHH---HHHHhCCCCcccHHHChHh
Confidence 667776642210 11111222 222234444321124566666664 3444444556777766433
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0035 Score=51.24 Aligned_cols=118 Identities=14% Similarity=0.276 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccc-cccCCCccchHHHHHHHHHHHHhcc--CCCCeEEEEecCCccccc---
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFL-RKRSSETISESLRATLNAFLYRTGE--QSDKFMLVLASNTPQQFD--- 101 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~-~~r~~~~~~~~~~~~l~~lL~~l~~--~~~~v~vI~tTn~~~~ld--- 101 (242)
.....+..++........+.||+|||+|.+. .... ....+..|...++. ...++.+|.+++......
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 3456778888887776546999999999998 2221 12333444444432 233444444443322222
Q ss_pred ---HHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC
Q psy4165 102 ---WAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL 166 (242)
Q Consensus 102 ---~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~ 166 (242)
..+.+|+.. +++++-+.++..++++..+.+. . .+ ..+ +..++.+...|.|.
T Consensus 174 ~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~----------~~-~~~-~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 174 DDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I----------KL-PFS-DEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------------------HHHHHHHHHHHTT-
T ss_pred cccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h----------cc-cCC-HHHHHHHHHHhCCC
Confidence 234488886 9999999999999999988753 1 11 111 44457788888764
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0077 Score=57.29 Aligned_cols=160 Identities=9% Similarity=0.043 Sum_probs=88.1
Q ss_pred hHHHHHHhcCCcEEE-EecCC-------------ccc---ccchHHHHHHHHHHHHHh---------CCCcEEEEEeccc
Q psy4165 2 FAKKLAHHSGMDYAI-MTGGD-------------VAP---MGSSGVTAIHKVFDWASS---------SRKGLVLFIDEAD 55 (242)
Q Consensus 2 lA~aiA~e~~~~~~~-v~~~~-------------l~~---~~g~~e~~l~~~f~~A~~---------~~~p~Il~iDeiD 55 (242)
+++++|++++..++. +++.. +.. .+......++.++..+.. ..+..||||||+|
T Consensus 126 l~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiP 205 (637)
T TIGR00602 126 TIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLP 205 (637)
T ss_pred HHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecch
Confidence 688899988876544 22111 001 111234456666666652 1236899999999
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC-Ccc--------c------ccHHHhc--ccccEEEeCCCC
Q psy4165 56 AFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN-TPQ--------Q------FDWAVND--RLDEMVEFPLPT 118 (242)
Q Consensus 56 ~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn-~~~--------~------ld~al~~--Rfd~~i~~~~P~ 118 (242)
.++.. . ...+..+|.+.-...+.+.+|++++ .+. . |.++++. |.. +|.|++.+
T Consensus 206 n~~~r-~--------~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia 275 (637)
T TIGR00602 206 NQFYR-D--------TRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIA 275 (637)
T ss_pred hhchh-h--------HHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCC
Confidence 98642 1 1133444442211233344444333 221 1 3367774 554 89999999
Q ss_pred HHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 119 LNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 119 ~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
...-...|+..+.+...... ....+.-...+..|+. .+.+|++.+++..+.++
T Consensus 276 ~t~l~K~L~rIl~~E~~~~~-------~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 276 PTIMKKFLNRIVTIEAKKNG-------EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHHHHHHHHhhhhccc-------cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 99988888888875211100 0000111223455655 57789999998666553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=50.04 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=84.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-hccCCCCeEEEEecC------------CcccccHHHhcccccEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-TGEQSDKFMLVLASN------------TPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-l~~~~~~v~vI~tTn------------~~~~ld~al~~Rfd~~i 112 (242)
|.||||||++-|- -..++ ||+. +++.-.+ ++|++|| .|..||-.|+.|.- .|
T Consensus 289 pGVLFIDEvHMLD------------IEcFs-FlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~l-II 353 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD------------IECFS-FLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRML-II 353 (454)
T ss_pred cceEEEeeehhhh------------hHHHH-HHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhh-ee
Confidence 8999999998772 12222 3333 3433334 5555665 47789999998874 78
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh-HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCcc
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT-SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLT 191 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~-~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~ 191 (242)
...+.+.++-+.||+.-... +++.++ ..++.|...-..-|-+---+|+..+...+...+...+.
T Consensus 354 ~t~py~~~d~~~IL~iRc~E---------------Edv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~ 418 (454)
T KOG2680|consen 354 STQPYTEEDIKKILRIRCQE---------------EDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVE 418 (454)
T ss_pred ecccCcHHHHHHHHHhhhhh---------------hccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceee
Confidence 88888999999999987654 222221 22344444444455555556666555555556666888
Q ss_pred HHHHHHHHHHHHHh
Q psy4165 192 EAMVMSKVEDSIRA 205 (242)
Q Consensus 192 ~~~~~~a~~~~~~~ 205 (242)
.+|+..+..-++..
T Consensus 419 ~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 419 VDDIERVYRLFLDE 432 (454)
T ss_pred hhHHHHHHHHHhhh
Confidence 89999988777654
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=53.31 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=89.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHH---------------hCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS---------------SSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~---------------~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|++|.... +.||+.++|+.+.. +..-..+|-..+ ... +..|||||+|.+-
T Consensus 177 lA~~ih~~s~~~~~~~i~i~c~~~~~-----~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~-~Gtl~l~~i~~l~----- 245 (469)
T PRK10923 177 VAHALHRHSPRAKAPFIALNMAAIPK-----DLIESELFGHEKGAFTGANTIRQGRFEQAD-GGTLFLDEIGDMP----- 245 (469)
T ss_pred HHHHHHhcCCCCCCCeEeeeCCCCCH-----HHHHHHhcCCCCCCCCCCCcCCCCCeeECC-CCEEEEeccccCC-----
Confidence 677777664 46999999988732 111122222110 112 5678999999984
Q ss_pred CccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCC--CHHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLP--TLNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P--~~~~R~~I 125 (242)
......+..+|..-. . ....+-+|+||+.. ..+.+.|..|| ...|++|+. -.++...|
T Consensus 246 ----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l 321 (469)
T PRK10923 246 ----LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRL 321 (469)
T ss_pred ----HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHH
Confidence 223333334433211 0 01235788888653 23455666666 455555544 23556668
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+++|+.+..... +.....+. ...+..|....=--+.++|++++. .++.....+.++.+++-..
T Consensus 322 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNv~eL~~~i~---~~~~~~~~~~i~~~~l~~~ 384 (469)
T PRK10923 322 ARHFLQVAAREL------GVEAKLLH-PETEAALTRLAWPGNVRQLENTCR---WLTVMAAGQEVLIQDLPGE 384 (469)
T ss_pred HHHHHHHHHHHc------CCCCCCcC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHCcHh
Confidence 888887642211 11111222 223355555532235667777775 4444444556777776433
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=55.32 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=63.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------chHH-------HHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SSGV-------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~~e-------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|-..+ +.||+.++|+.+-... |... ..-..+|+.|. +..|||||||.+-
T Consensus 242 ~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~----~GtL~LdeI~~L~------ 311 (520)
T PRK10820 242 LLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQAN----GGSVLLDEIGEMS------ 311 (520)
T ss_pred HHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC----CCEEEEeChhhCC------
Confidence 4788864443 3599999998874211 1000 00011233322 5789999999993
Q ss_pred ccchHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHHH
Q psy4165 65 TISESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|+.- + .....+-+|+||+..- .+.+.|..|+. ..|++|+.. .++...++
T Consensus 312 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~ 388 (520)
T PRK10820 312 ---PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLT 388 (520)
T ss_pred ---HHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHH
Confidence 33444444454331 1 0122467888876542 24455666654 445554442 23455566
Q ss_pred HHHHhcc
Q psy4165 127 RLYFDKF 133 (242)
Q Consensus 127 ~~~l~~~ 133 (242)
++|+.++
T Consensus 389 ~~fl~~~ 395 (520)
T PRK10820 389 ELFVARF 395 (520)
T ss_pred HHHHHHH
Confidence 6777654
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.02 Score=46.48 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccc
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLD 109 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd 109 (242)
...++++.+.+.-.....-++|+++|.+. ....|.||+-+++.+.++++|..|..+..+.|.+++|+.
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~------------~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~ 106 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYG------------IEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLI 106 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhe
Confidence 34566666655432212334578888873 346789999999999999999999999999999998886
Q ss_pred c------------EEEeCCCCHHHHHHHHHH
Q psy4165 110 E------------MVEFPLPTLNERERLVRL 128 (242)
Q Consensus 110 ~------------~i~~~~P~~~~R~~Il~~ 128 (242)
. .+.+...+.++-.+.++.
T Consensus 107 ~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 107 IEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred eccccccccccccccccCCCCHHHHHHHHHH
Confidence 3 467778888888888877
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=53.92 Aligned_cols=167 Identities=19% Similarity=0.267 Sum_probs=83.3
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHH-HHHHHH---------------HhCCCcEEEEEecccccccccC
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIH-KVFDWA---------------SSSRKGLVLFIDEADAFLRKRS 62 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~-~~f~~A---------------~~~~~p~Il~iDeiD~l~~~r~ 62 (242)
+|+++-... +.||+.++|+.+.. ..+. .+|-.. .... +..|||||+|.+-
T Consensus 178 lA~~ih~~s~~~~~~~v~v~c~~~~~------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~~i~~l~---- 246 (445)
T TIGR02915 178 LARALHQLSDRKDKRFVAINCAAIPE------NLLESELFGYEKGAFTGAVKQTLGKIEYAH-GGTLFLDEIGDLP---- 246 (445)
T ss_pred HHHHHHHhCCcCCCCeEEEECCCCCh------HHHHHHhcCCCCCCcCCCccCCCCceeECC-CCEEEEechhhCC----
Confidence 677776654 46899999988732 1111 122110 0122 6789999999993
Q ss_pred CCccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccccEEEeCCCCHHHHH----
Q psy4165 63 SETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLDEMVEFPLPTLNERE---- 123 (242)
Q Consensus 63 ~~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd~~i~~~~P~~~~R~---- 123 (242)
...+..+..+|..-. .....+-+|+||+.. ..+.+.|..|+. .+.+..|...+|.
T Consensus 247 -----~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~ 320 (445)
T TIGR02915 247 -----LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAV 320 (445)
T ss_pred -----HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHH
Confidence 333333344443211 011246788888754 234455554543 3445555555554
Q ss_pred HHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 124 RLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 124 ~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
.++++|+.++.... +.....++ ...+..|....=--+.++|++++. .++.......++.+++
T Consensus 321 ~l~~~~l~~~~~~~------~~~~~~~~-~~a~~~L~~~~wpgNvreL~~~i~---~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 321 LLANAFLERFAREL------KRKTKGFT-DDALRALEAHAWPGNVRELENKVK---RAVIMAEGNQITAEDL 382 (445)
T ss_pred HHHHHHHHHHHHHh------CCCCCCCC-HHHHHHHHhCCCCChHHHHHHHHH---HHHHhCCCCcccHHHc
Confidence 46777776643211 11111222 223344444421134566666665 3333334445655554
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.025 Score=49.67 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=65.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccc------cchHH-------HHHHHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPM------GSSGV-------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~------~g~~e-------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
+|++|-... +.||+.++|+.+-.. +|... ..-...|..| . +..|||||+|.+-
T Consensus 45 lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~-gGtL~l~~i~~L~------- 113 (326)
T PRK11608 45 IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---D-GGTLFLDELATAP------- 113 (326)
T ss_pred HHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---C-CCeEEeCChhhCC-------
Confidence 677776544 469999999986311 01000 0001112222 2 5789999999993
Q ss_pred cchHHHHHHHHHHHHhc--c------CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCCC--HHHHHHHHH
Q psy4165 66 ISESLRATLNAFLYRTG--E------QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLPT--LNERERLVR 127 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~--~------~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P~--~~~R~~Il~ 127 (242)
...+..+..++..-. . ....+-+|+||+.. ..+.+.|..|| ...|++|+.. .++...++.
T Consensus 114 --~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~ 191 (326)
T PRK11608 114 --MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAE 191 (326)
T ss_pred --HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHH
Confidence 333334444443211 0 01247788888753 34556677777 4466666542 245566777
Q ss_pred HHHhcc
Q psy4165 128 LYFDKF 133 (242)
Q Consensus 128 ~~l~~~ 133 (242)
+|+.++
T Consensus 192 ~fl~~~ 197 (326)
T PRK11608 192 HFAIQM 197 (326)
T ss_pred HHHHHH
Confidence 877654
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.046 Score=50.90 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=77.9
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHH-------------HHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGV-------------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e-------------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|-... +.||+.++|+.+-...-+++ ..-...|+.|. +..|||||||.+-
T Consensus 225 ~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~----gGtL~ldeI~~L~------ 294 (509)
T PRK05022 225 LVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELAD----GGTLFLDEIGELP------ 294 (509)
T ss_pred HHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcC----CCEEEecChhhCC------
Confidence 3688887764 46999999988742110000 00001233222 5779999999993
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHHH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~Il 126 (242)
...+..+..+|..-. .....+-+|++||..- .+.+.|..|+. ..|++|+.. .++...++
T Consensus 295 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~ 371 (509)
T PRK05022 295 ---LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLA 371 (509)
T ss_pred ---HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHH
Confidence 333333444443211 0112578888887642 23344444443 234554432 24455666
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++++.++.... +...-.++ ...+..|...-==-+.++|++++.
T Consensus 372 ~~fl~~~~~~~------~~~~~~~s-~~a~~~L~~y~WPGNvrEL~~~i~ 414 (509)
T PRK05022 372 GYFLEQNRARL------GLRSLRLS-PAAQAALLAYDWPGNVRELEHVIS 414 (509)
T ss_pred HHHHHHHHHHc------CCCCCCCC-HHHHHHHHhCCCCCcHHHHHHHHH
Confidence 77776542211 11111222 223344444421136678888886
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.01 Score=52.47 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=47.4
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-hccCCCCeEEEEecC------------CcccccHHHhcccccEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-TGEQSDKFMLVLASN------------TPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-l~~~~~~v~vI~tTn------------~~~~ld~al~~Rfd~~i 112 (242)
|.||||||++-|- -..++ ||+. |+..-. -+||.+|| .|..+|..|+.|+ ..|
T Consensus 279 pGVLFIDEvHmLD------------iEcFs-fLnralEs~~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLD------------IECFS-FLNRALESELS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LII 343 (398)
T ss_dssp E-EEEEESGGGSB------------HHHHH-HHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEE
T ss_pred cceEEecchhhcc------------HHHHH-HHHHHhcCCCC-cEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEE
Confidence 8999999999882 12333 4443 443333 37777787 5778999999998 488
Q ss_pred EeCCCCHHHHHHHHHHHHhc
Q psy4165 113 EFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~ 132 (242)
...+.+.++-++|++.-...
T Consensus 344 ~t~py~~~ei~~Il~iR~~~ 363 (398)
T PF06068_consen 344 RTKPYSEEEIKQILKIRAKE 363 (398)
T ss_dssp EE----HHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHhhhhh
Confidence 99999999999999998875
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.03 Score=52.30 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred ChHHHHHHh---cCCcEEEEecCCccccc------chHH--------HHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHH---SGMDYAIMTGGDVAPMG------SSGV--------TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e---~~~~~~~v~~~~l~~~~------g~~e--------~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|-+. .+.||+.++|+.+-... |..+ ..-..+|+.|. ...|||||||.+-
T Consensus 250 ~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~~Lp----- 320 (526)
T TIGR02329 250 LVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH----RGTLFLDEIGEMP----- 320 (526)
T ss_pred HHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC----CceEEecChHhCC-----
Confidence 468888765 34699999998873211 1000 00111233222 5789999999983
Q ss_pred CccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..-. . ..-.+-+|++||..- .+.+.|.-|+. ..|++|+.. .++...+
T Consensus 321 ----~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L 396 (526)
T TIGR02329 321 ----LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPL 396 (526)
T ss_pred ----HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHH
Confidence 333444444443211 0 111346888887542 22223334443 455565542 2456667
Q ss_pred HHHHHhcc
Q psy4165 126 VRLYFDKF 133 (242)
Q Consensus 126 l~~~l~~~ 133 (242)
+.+|+.+.
T Consensus 397 ~~~fl~~~ 404 (526)
T TIGR02329 397 AAEYLVQA 404 (526)
T ss_pred HHHHHHHH
Confidence 78888764
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.033 Score=47.12 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=51.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
--|++|+++|.+. ....|.||+.+++.+.++++|.+|+.++.|.|.+++|.. .+.|+.+
T Consensus 89 ~KV~II~~ae~m~------------~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLN------------KQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhC------------HHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 4899999999983 346689999999999999999999999999999999986 5777766
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.029 Score=55.08 Aligned_cols=38 Identities=21% Similarity=0.053 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+.+++-++|.|...-...++.+|.+.|+.-+.
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 68999999999888888888888999999999987664
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.017 Score=49.77 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=51.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
--|++||++|.+. ...-|.||+-+++++.++++|..|+.++.|.|.+++|+. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt------------~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT------------LDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 4699999999993 345688999999999999999999999999999999996 7788765
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.35 Score=41.43 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=85.6
Q ss_pred CcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCe
Q psy4165 12 MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKF 88 (242)
Q Consensus 12 ~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v 88 (242)
+.++.+.++++ ....++..+... .+.-||+|++++.+... .....|+..+...++..
T Consensus 19 ~~~~~~~~~e~---------~~~~l~~~~~~~slf~~~kliii~~~~~~~~~-----------~~~~~L~~~l~~~~~~~ 78 (302)
T TIGR01128 19 FNVFRIDGEEF---------DWNQLLEEAQTLPLFSERRLVELRNPEGKPGA-----------KGLKALEEYLANPPPDT 78 (302)
T ss_pred heeeeeccCCC---------CHHHHHHHhhccCcccCCeEEEEECCCCCCCH-----------HHHHHHHHHHhcCCCCE
Confidence 45566665544 233344554432 23579999999887321 12455666565555566
Q ss_pred EEEEecCCccccc---HHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC
Q psy4165 89 MLVLASNTPQQFD---WAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163 (242)
Q Consensus 89 ~vI~tTn~~~~ld---~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t 163 (242)
++|..++.++.-. ..+.. +. ..++++.|+..+....++.++.+.+.. .+ ...++.++..+
T Consensus 79 ~~i~~~~~~~~~~~~~k~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~g~~----------i~----~~a~~~l~~~~ 143 (302)
T TIGR01128 79 LLLIEAPKLDKRKKLTKWLKALKNA-QIVECKTPKEQELPRWIQARLKKLGLR----------ID----PDAVQLLAELV 143 (302)
T ss_pred EEEEecCCCCHhHHHHHHHHHhcCe-eEEEecCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHh
Confidence 6666666433211 12222 44 488899999999999999999874332 22 23346677776
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 164 EGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 164 ~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
.| ....+.+-+. +...++. .+.+|.++++..+.
T Consensus 144 ~~-d~~~l~~el~--KL~~~~~-~~~It~e~I~~~~~ 176 (302)
T TIGR01128 144 EG-NLLAIAQELE--KLALYAP-DGKITLEDVEEAVS 176 (302)
T ss_pred Cc-HHHHHHHHHH--HHHhhCC-CCCCCHHHHHHHHh
Confidence 42 3444444443 3334433 33688888876654
|
subunit around DNA forming a DNA sliding clamp. |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.1 Score=45.31 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHH----------------h-
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAV----------------N- 105 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al----------------~- 105 (242)
...+-||+|||+|.+-+ +....++. .++.+-.. .++++|.+.++ +.|-.++ +
T Consensus 170 ~~~~iViiIDdLDR~~~--------~~i~~~l~-~ik~~~~~-~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSP--------EEIVELLE-AIKLLLDF-PNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred CCceEEEEEcchhcCCc--------HHHHHHHH-HHHHhcCC-CCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHHH
Confidence 34489999999999943 22333332 22333233 45666666653 3233322 2
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc-----cCCCChhHhHHHHHHhCC--CCCHHHHHHHHH
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK-----VAPFDYTSLCSKIAHVTE--GLSGREIAKLGV 176 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~-----~~~~d~~~~l~~la~~t~--g~s~adi~~lv~ 176 (242)
.-|+..+.+|+|+..+...++...+................ .........+..+..... .-+|++|+++++
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN 316 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFIN 316 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHH
Confidence 45788999999999998888888876543322111100000 000001222334444332 458999999987
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.016 Score=52.02 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=84.2
Q ss_pred cCCcEEEEecCCcccccchHHHHHHHHHHHHH-------h-------CCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 10 SGMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS-------S-------SRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~-------~-------~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
.+.||+.+||+.+....-+++ +|-..+ . .+....||+|||..+- ...+..+-
T Consensus 129 ~~~PFI~~NCa~~~en~~~~e-----LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP---------~~~Q~kLl 194 (403)
T COG1221 129 AEAPFIAFNCAAYSENLQEAE-----LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP---------PEGQEKLL 194 (403)
T ss_pred cCCCEEEEEHHHhCcCHHHHH-----HhccccceeecccCCcCchheecCCCEEehhhhhhCC---------HhHHHHHH
Confidence 467999999998864321211 333111 1 1126899999999983 33444455
Q ss_pred HHHHH-----hc---cCCCCeEEEEecCCcccccHHHh-------cccccEEEeCCC--CHHHHHHHHHHHHhccccchh
Q psy4165 76 AFLYR-----TG---EQSDKFMLVLASNTPQQFDWAVN-------DRLDEMVEFPLP--TLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 76 ~lL~~-----l~---~~~~~v~vI~tTn~~~~ld~al~-------~Rfd~~i~~~~P--~~~~R~~Il~~~l~~~~~~~~ 138 (242)
.+|.. ++ .....|-+|+||| ..++.+++ +|+...|++|+. -.+++..+.++|+.......
T Consensus 195 ~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l- 271 (403)
T COG1221 195 RVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL- 271 (403)
T ss_pred HHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc-
Confidence 55544 22 2344688998886 34555555 377778888765 45677778888887643321
Q ss_pred hhcccccccCCCChhHhHHHHHHh-CCCCCHHHHHHHHHHHHHHH
Q psy4165 139 AQGKRRLKVAPFDYTSLCSKIAHV-TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 139 ~~~~~~~~~~~~d~~~~l~~la~~-t~g~s~adi~~lv~~a~~~~ 182 (242)
+.+....+ ...+..+-.. .+| +.++|+++|..+.+.+
T Consensus 272 -----~~~~~~~~-~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 272 -----GLPLSVDS-PEALRALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred -----CCCCCCCC-HHHHHHHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 22222222 1112222222 222 6788888887444443
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.013 Score=52.50 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=59.8
Q ss_pred HHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecCCcc-cccHHH
Q psy4165 39 WASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASNTPQ-QFDWAV 104 (242)
Q Consensus 39 ~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn~~~-~ld~al 104 (242)
.|+.+ ..|+|+||+-.|- ..+++.||+-+. .++-++++|||+|.-. .|-|.|
T Consensus 140 La~An--RGIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqL 205 (423)
T COG1239 140 LARAN--RGILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQL 205 (423)
T ss_pred hhhcc--CCEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhh
Confidence 44545 4899999998882 234555555442 2345699999999653 688888
Q ss_pred hcccccEEEeCCC-CHHHHHHHHHHHHh
Q psy4165 105 NDRLDEMVEFPLP-TLNERERLVRLYFD 131 (242)
Q Consensus 105 ~~Rfd~~i~~~~P-~~~~R~~Il~~~l~ 131 (242)
+.||...|.+..| +.++|.+|.++-+.
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 8999999999988 88999999998765
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.13 Score=49.64 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccc------cch--------HHHHHHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPM------GSS--------GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~------~g~--------~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
++|++|...+ +.||+.++|..+... +|. ....+ ..|+.|. +..|||||||.+-
T Consensus 414 ~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a~----~GtL~Ldei~~L~----- 483 (686)
T PRK15429 414 LIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELAD----KSSLFLDEVGDMP----- 483 (686)
T ss_pred HHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhcC----CCeEEEechhhCC-----
Confidence 4788887754 469999999876321 110 01111 2233322 6899999999983
Q ss_pred CccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCcc-------cccHHHhcccccEEEeCCCCHHHH----HH
Q psy4165 64 ETISESLRATLNAFLYRTG--------EQSDKFMLVLASNTPQ-------QFDWAVNDRLDEMVEFPLPTLNER----ER 124 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~~-------~ld~al~~Rfd~~i~~~~P~~~~R----~~ 124 (242)
...+..+..+|..-. ....++-+|++|+..- .+.+.+.-|+. .+.+..|...+| ..
T Consensus 484 ----~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~ 558 (686)
T PRK15429 484 ----LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPL 558 (686)
T ss_pred ----HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHH
Confidence 334444444543311 1123577888887642 12222333332 344555554444 44
Q ss_pred HHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++++|+.++.... +.....+. ...+..|...-==-+.++|++++.
T Consensus 559 L~~~~l~~~~~~~------~~~~~~~s-~~al~~L~~y~WPGNvrEL~~~i~ 603 (686)
T PRK15429 559 LVKAFTFKIARRM------GRNIDSIP-AETLRTLSNMEWPGNVRELENVIE 603 (686)
T ss_pred HHHHHHHHHHHHc------CCCCCCcC-HHHHHHHHhCCCCCcHHHHHHHHH
Confidence 6777776642211 11111222 223344444421135677777775
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.056 Score=45.07 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=64.4
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
.+|++|..+|.+++.++|++-. .-..+.++|.-+... ++.++|||++.+- ...-.++.+.+..+
T Consensus 48 tik~La~~lG~~~~vfnc~~~~-----~~~~l~ril~G~~~~--GaW~cfdefnrl~---------~~vLS~i~~~i~~i 111 (231)
T PF12774_consen 48 TIKDLARALGRFVVVFNCSEQM-----DYQSLSRILKGLAQS--GAWLCFDEFNRLS---------EEVLSVISQQIQSI 111 (231)
T ss_dssp HHHHHHHCTT--EEEEETTSSS------HHHHHHHHHHHHHH--T-EEEEETCCCSS---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEecccccc-----cHHHHHHHHHHHhhc--Cchhhhhhhhhhh---------HHHHHHHHHHHHHH
Confidence 4789999999999999999864 345788889877766 5999999999983 33333444444333
Q ss_pred ----ccC-------------CCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 82 ----GEQ-------------SDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 82 ----~~~-------------~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
... +...-++.|.| .-..||+.|+.-| +.+.+-.||.+...+++-
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred HHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 111 11233444555 2357888887666 689999998877655543
|
|
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=49.55 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=88.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH-------------h----ccCCCCeEEEEecCC-----cccccHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR-------------T----GEQSDKFMLVLASNT-----PQQFDWA 103 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~-------------l----~~~~~~v~vI~tTn~-----~~~ld~a 103 (242)
..||||||+..|.. ......|..++.. . ...+-.+.+|+..|+ ...+|+.
T Consensus 226 gGVLiIdei~lL~~--------~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~ 297 (647)
T COG1067 226 GGVLIIDEIGLLAQ--------PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRS 297 (647)
T ss_pred CcEEEEEhhhhhCc--------HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHH
Confidence 68999999999952 2233344444433 0 112233566666653 3345555
Q ss_pred HhcccccEEEeC--CC-CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCC-----CCHHHHHHHH
Q psy4165 104 VNDRLDEMVEFP--LP-TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG-----LSGREIAKLG 175 (242)
Q Consensus 104 l~~Rfd~~i~~~--~P-~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g-----~s~adi~~lv 175 (242)
++.-|....+|. .| +.+.|..+|+.+.+.+..+. +-..++.--+...+....++++. .+++||.+++
T Consensus 298 r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~-----~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv 372 (647)
T COG1067 298 RIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDG-----NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLV 372 (647)
T ss_pred HHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHH
Confidence 555565555555 66 88999999999998754331 01111111122233445555432 6899999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.|--.+.......++.+|+++|++.....
T Consensus 373 ~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 373 REAGDIAVSEGRKLITAEDVEEALQKRELR 402 (647)
T ss_pred HHhhHHHhcCCcccCcHHHHHHHHHhhhhH
Confidence 944444444455699999999999885433
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=55.16 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=79.5
Q ss_pred CcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCe
Q psy4165 12 MDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKF 88 (242)
Q Consensus 12 ~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v 88 (242)
..++.++...+.. ++ |+.+..++.+.+.+.....+.||||||++.+.+.....+ .... ..+|..+-. .+++
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~-~nlLkp~L~-rg~l 317 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDA-ANLLKPLLA-RGGL 317 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHH-HHhhHHHHh-cCCe
Confidence 4567777665553 44 899999999999999665589999999999998765521 1111 223333322 3338
Q ss_pred EEEEecCC-----cccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 89 MLVLASNT-----PQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 89 ~vI~tTn~-----~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
-+||||.. .-.=||++-+||+ .+.++-|+.+.-..||...-.+
T Consensus 318 ~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 318 WCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 99998862 2234889999998 7789999988766677666554
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.088 Score=49.31 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=61.1
Q ss_pred ChHHHHHHh-----------cCCcEEEEecCCcccccchHH------H--------HHHHHHHHHHhCCCcEEEEEeccc
Q psy4165 1 MFAKKLAHH-----------SGMDYAIMTGGDVAPMGSSGV------T--------AIHKVFDWASSSRKGLVLFIDEAD 55 (242)
Q Consensus 1 llA~aiA~e-----------~~~~~~~v~~~~l~~~~g~~e------~--------~l~~~f~~A~~~~~p~Il~iDeiD 55 (242)
++|++|-.. .+.||+.++|+.+-...-+++ . .-..+|+.|. ...||||||+
T Consensus 257 ~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~ 332 (538)
T PRK15424 257 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH----GGTLFLDEIG 332 (538)
T ss_pred HHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC----CCEEEEcChH
Confidence 467877665 456999999998742110100 0 0001233322 5789999999
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCH
Q psy4165 56 AFLRKRSSETISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTL 119 (242)
Q Consensus 56 ~l~~~r~~~~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~ 119 (242)
.+- ...+..+..+|..-. . ..-.+-+|++||.. +...+. |+|.. .+.+..|..
T Consensus 333 ~Lp---------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v~~g~Fr~dL~yrL~~~~I~lPPL 401 (538)
T PRK15424 333 EMP---------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDVRQGRFRRDLFYRLSILRLQLPPL 401 (538)
T ss_pred hCC---------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HHHHHhcccchHHHHHHhcCCeecCCCh
Confidence 983 333434444443211 0 11235788888754 333222 33321 334444443
Q ss_pred ----HHHHHHHHHHHhc
Q psy4165 120 ----NERERLVRLYFDK 132 (242)
Q Consensus 120 ----~~R~~Il~~~l~~ 132 (242)
++...++++|+.+
T Consensus 402 ReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 402 RERVADILPLAESFLKQ 418 (538)
T ss_pred hhchhHHHHHHHHHHHH
Confidence 4455677778765
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.14 Score=48.96 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=94.5
Q ss_pred cCCcEEEEecCCcccccchHHHH------H-HHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 10 SGMDYAIMTGGDVAPMGSSGVTA------I-HKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~~~g~~e~~------l-~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
.+.||+..+++...+..|..+-. + ..-|...+. .+...+|||||++.+- ......+..+|
T Consensus 180 ~~aPvi~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~---------~~~q~~Llr~L 250 (637)
T PRK13765 180 KTAPFVDATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLD---------LESQQSLLTAM 250 (637)
T ss_pred CCCCEEEeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCC---------HHHHHHHHHHH
Confidence 46799998887765544433311 1 112222111 1126899999999992 22333333343
Q ss_pred HH--hc--c--------------CCCCeEEEEecCCc--ccccHHHhcccc---cEEEeC--CC-CHHHHHHHHHHHHhc
Q psy4165 79 YR--TG--E--------------QSDKFMLVLASNTP--QQFDWAVNDRLD---EMVEFP--LP-TLNERERLVRLYFDK 132 (242)
Q Consensus 79 ~~--l~--~--------------~~~~v~vI~tTn~~--~~ld~al~~Rfd---~~i~~~--~P-~~~~R~~Il~~~l~~ 132 (242)
.. +. . .+-.+.||++||+. ..+||+|..||. ..++|. .| +.+.+..+++.+-+.
T Consensus 251 ~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe 330 (637)
T PRK13765 251 QEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQE 330 (637)
T ss_pred HhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHH
Confidence 21 10 0 01246788888774 677999998885 556655 22 456666666544333
Q ss_pred cccchhhhcccccccCCCCh---hHhHHHHHHhCCC-----CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDY---TSLCSKIAHVTEG-----LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~---~~~l~~la~~t~g-----~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.... -....++- ...++...+...- +..++|..+++.|...+.......++.+++.+|+..
T Consensus 331 ~~~~--------G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 331 VKRD--------GKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred hhhc--------cCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2110 00112221 1122333333321 347899999996555555555568888888777653
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.055 Score=42.80 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=52.8
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHH------------------HHHHhCCCcEEEEEeccccccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVF------------------DWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f------------------~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
++|++|-+... .||+.++|+.+.. +..-.++| +.|. ...|||||||.+-
T Consensus 37 ~lA~~IH~~s~r~~~pfi~vnc~~~~~-----~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L~- 106 (168)
T PF00158_consen 37 LLARAIHNNSPRKNGPFISVNCAALPE-----ELLESELFGHEKGAFTGARSDKKGLLEQAN----GGTLFLDEIEDLP- 106 (168)
T ss_dssp HHHHHHHHCSTTTTS-EEEEETTTS-H-----HHHHHHHHEBCSSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS--
T ss_pred HHHHHHHHhhhcccCCeEEEehhhhhc-----chhhhhhhccccccccccccccCCceeecc----ceEEeecchhhhH-
Confidence 47888877643 6999999998732 22223333 3333 6899999999993
Q ss_pred ccCCCccchHHHHHHHHHHHHh-----cc---CCCCeEEEEecCCcccccHHHh-cccc
Q psy4165 60 KRSSETISESLRATLNAFLYRT-----GE---QSDKFMLVLASNTPQQFDWAVN-DRLD 109 (242)
Q Consensus 60 ~r~~~~~~~~~~~~l~~lL~~l-----~~---~~~~v~vI~tTn~~~~ld~al~-~Rfd 109 (242)
...+..+..+|..- +. ..-++-+|+||+. ++...+. |+|.
T Consensus 107 --------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~g~fr 155 (168)
T PF00158_consen 107 --------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQGRFR 155 (168)
T ss_dssp --------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHTTSS-
T ss_pred --------HHHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHcCCCh
Confidence 34455555555532 11 1235889999985 4666665 7775
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >KOG2228|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.071 Score=46.64 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHh----CCCcEEEEEecccccccccCCCccchHHHHHH-HHHHHHhccCCCCeEEEEecCCcccc---
Q psy4165 29 GVTAIHKVFDWASS----SRKGLVLFIDEADAFLRKRSSETISESLRATL-NAFLYRTGEQSDKFMLVLASNTPQQF--- 100 (242)
Q Consensus 29 ~e~~l~~~f~~A~~----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l-~~lL~~l~~~~~~v~vI~tTn~~~~l--- 100 (242)
...++..+....+. ...|.|.++||+|.+++- .++++ =.+..--+....+|.+||.|.+.+.+
T Consensus 117 fte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h---------~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~L 187 (408)
T KOG2228|consen 117 FTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH---------SRQTLLYNLFDISQSARAPICIIGVTTRLDILELL 187 (408)
T ss_pred cchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc---------hhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHH
Confidence 33445555554443 122577778899999752 22222 22222223556789999999777655
Q ss_pred cHHHhcccccE-EEeCCC-CHHHHHHHHHHHH
Q psy4165 101 DWAVNDRLDEM-VEFPLP-TLNERERLVRLYF 130 (242)
Q Consensus 101 d~al~~Rfd~~-i~~~~P-~~~~R~~Il~~~l 130 (242)
...+.+||... |++++| ...+-.++++..+
T Consensus 188 EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 188 EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 45555899766 777766 6788888888887
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.071 Score=49.30 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHH--HHHHHHHHHHHhCC--------CcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSR--------KGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~--------~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
|+|++|=+.+. -||+.++|+.+-...=|+| ..-+-.|.-|.... ...-||+|||-.+ +
T Consensus 283 lfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------p 353 (560)
T COG3829 283 LFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------P 353 (560)
T ss_pred HHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------C
Confidence 47787766644 5999999987732111111 01122344443321 1467999999777 3
Q ss_pred hHHHHHHHHHHHHh-----c---cCCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCC----HHHHHHHHH
Q psy4165 68 ESLRATLNAFLYRT-----G---EQSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPT----LNERERLVR 127 (242)
Q Consensus 68 ~~~~~~l~~lL~~l-----~---~~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~----~~~R~~Il~ 127 (242)
-..+.-+...|++= + ...-.|=||+|||+ .+-+++. |+|-. ++.+..|- .++...+..
T Consensus 354 l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~ 431 (560)
T COG3829 354 LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAE 431 (560)
T ss_pred HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc--CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHH
Confidence 33444444444431 1 12235899999996 4667777 66521 34444443 355556677
Q ss_pred HHHhccccchhhhcccccccCCCChhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 128 LYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
+++.++.... +.....+.- ..+..|.+.- + =+.++|+|++. .+..+...+..++.+++-
T Consensus 432 ~Fl~k~s~~~------~~~v~~ls~-~a~~~L~~y~WP-GNVRELeNviE--R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 432 YFLDKFSRRY------GRNVKGLSP-DALALLLRYDWP-GNVRELENVIE--RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHHHHHHc------CCCcccCCH-HHHHHHHhCCCC-chHHHHHHHHH--HHHhccCCcceeehhhcc
Confidence 7777643332 222222331 1222232221 1 15677777775 233334444455555443
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.1 Score=44.43 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=61.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-----chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-----SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-----g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
||.|||+++ +.+++.++.+++...+ +.+.....++++... . ..+|+|||+...- ........
T Consensus 130 La~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-~--~dlLviDDlg~e~-------~t~~~~~~ 199 (268)
T PRK08116 130 LAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-N--ADLLILDDLGAER-------DTEWAREK 199 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-C--CCEEEEecccCCC-------CCHHHHHH
Confidence 788888874 7899999988776432 111112223333333 2 4699999985421 12222333
Q ss_pred HHHHHHHhccCCCCeEEEEecCCc-cc----ccHHHhccc---ccEEEeCCCCHHHHHHHHHHHH
Q psy4165 74 LNAFLYRTGEQSDKFMLVLASNTP-QQ----FDWAVNDRL---DEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 74 l~~lL~~l~~~~~~v~vI~tTn~~-~~----ld~al~~Rf---d~~i~~~~P~~~~R~~Il~~~l 130 (242)
+-.++... +..+..+|.|||.+ .. ++..+.+|+ -..|.++-|+ -|.++.+.-+
T Consensus 200 l~~iin~r--~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~~ek~ 260 (268)
T PRK08116 200 VYNIIDSR--YRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIAKEKL 260 (268)
T ss_pred HHHHHHHH--HHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHHHHHH
Confidence 33343332 12233577777764 33 466677663 2345565555 3655555443
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.063 Score=51.33 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+.+++-++|.|...-.+.++.+|.++|++-+.
T Consensus 556 iT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 556 ITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 78999999999888888888888999999999987765
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.02 Score=46.24 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=41.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLP 117 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P 117 (242)
+++|+|||+..+++.|.... ......+ ++|... ...++-+|.+|..+..||+.++++.+..+++..+
T Consensus 80 ~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp T-EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CcEEEEECChhhcCCCcccc--ccchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 79999999999999887632 1122333 444333 3445788899999999999999888888877655
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.077 Score=39.70 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=56.2
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+++.++.++. -.+++++..+..... .....+.+.|....... +.+|||||++.+- .....+..+.
T Consensus 18 ll~~~~~~~~~~~~~~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~i~iDEiq~~~----------~~~~~lk~l~- 84 (128)
T PF13173_consen 18 LLKQLAKDLLPPENILYINFDDPRDRR-LADPDLLEYFLELIKPG-KKYIFIDEIQYLP----------DWEDALKFLV- 84 (128)
T ss_pred HHHHHHHHhcccccceeeccCCHHHHH-HhhhhhHHHHHHhhccC-CcEEEEehhhhhc----------cHHHHHHHHH-
Confidence 5667777665 667777776653211 00000223333322123 7999999998881 1233334443
Q ss_pred HhccCCCCeEEEEecCCcccc----cHHHhcccccEEEeCCCCHHH
Q psy4165 80 RTGEQSDKFMLVLASNTPQQF----DWAVNDRLDEMVEFPLPTLNE 121 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~l----d~al~~Rfd~~i~~~~P~~~~ 121 (242)
+.. .++-+|.|++....+ ...+.||.. .+++.+.+..|
T Consensus 85 --d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 85 --DNG-PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred --Hhc-cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 222 334555555444433 344558986 88888888765
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.13 Score=39.58 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=47.7
Q ss_pred CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccc--cEEEeCCCCHH
Q psy4165 43 SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLD--EMVEFPLPTLN 120 (242)
Q Consensus 43 ~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd--~~i~~~~P~~~ 120 (242)
..++.+|+||.+|.+.......+ .......+..++.. ....++-+|.|+. +...+. +..++. ..+++++-+.+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~-~~~~~~~l~~l~~~--~~~~~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQE-RQRLLDLLSQLLPQ--ALPPGVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred cCCceEEEEechHhcccchhhhH-HHHHHHHHHHHhhh--ccCCCCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCHH
Confidence 33479999999999976432210 11223334444432 1122333333332 333322 332222 46899989999
Q ss_pred HHHHHHHHHHhc
Q psy4165 121 ERERLVRLYFDK 132 (242)
Q Consensus 121 ~R~~Il~~~l~~ 132 (242)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999999863
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.17 Score=46.53 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=83.9
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcccccchHH--HHHHHHHHHHHhCC-------CcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASSSR-------KGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~~~-------~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++||+|=..+. .||+.+||+.+-...-|+| ...+-.|.-|.... .+.-||+|||-.+ +-
T Consensus 261 lvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL 331 (550)
T COG3604 261 LVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PL 331 (550)
T ss_pred HHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CH
Confidence 36777766544 5999999998854332333 23444455444321 2678999999776 22
Q ss_pred HHHHHHHHHHHH--hc---c---CCCCeEEEEecCCcccccHHHh-ccccc-------EEEeCCCCH----HHHHHHHHH
Q psy4165 69 SLRATLNAFLYR--TG---E---QSDKFMLVLASNTPQQFDWAVN-DRLDE-------MVEFPLPTL----NERERLVRL 128 (242)
Q Consensus 69 ~~~~~l~~lL~~--l~---~---~~~~v~vI~tTn~~~~ld~al~-~Rfd~-------~i~~~~P~~----~~R~~Il~~ 128 (242)
..+.-+-..|++ ++ . ..=.|=||++||+ +|-.++. |+|-- .+.+..|-. ++.--+.++
T Consensus 332 ~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~ 409 (550)
T COG3604 332 ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGY 409 (550)
T ss_pred HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHH
Confidence 333333333333 21 1 1113889999996 5777777 65521 334444433 333445566
Q ss_pred HHhccccchhhhcccccccCCCChh-HhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 129 YFDKFVLQPAAQGKRRLKVAPFDYT-SLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~d~~-~~l~~la~~t~g~s~adi~~lv~ 176 (242)
|+.++.... ....+.++ ..++.|.+..===+.++|++++.
T Consensus 410 Fle~~~~~~--------gr~~l~ls~~Al~~L~~y~wPGNVRELen~ve 450 (550)
T COG3604 410 FLEKFRRRL--------GRAILSLSAEALELLSSYEWPGNVRELENVVE 450 (550)
T ss_pred HHHHHHHhc--------CCcccccCHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 666543321 12222222 22333443321126788999997
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.026 Score=46.10 Aligned_cols=63 Identities=32% Similarity=0.417 Sum_probs=24.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecC-----------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASN----------------- 95 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn----------------- 95 (242)
..|||+||+-.| ...++..|+.-|+ .++.++++|+|+|
T Consensus 107 ~GVLflDE~~ef------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs 174 (206)
T PF01078_consen 107 RGVLFLDELNEF------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCS 174 (206)
T ss_dssp TSEEEECETTTS-------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------
T ss_pred CCEEEechhhhc------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccc
Confidence 489999999777 2456666666553 2344678899887
Q ss_pred ------CcccccHHHhcccccEEEeCCCCHH
Q psy4165 96 ------TPQQFDWAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 96 ------~~~~ld~al~~Rfd~~i~~~~P~~~ 120 (242)
+...|...|+.|||..++++..+.+
T Consensus 175 ~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 175 PRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccC
Confidence 2345666777888888888876654
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.068 Score=40.34 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=46.6
Q ss_pred ChHHHHHHhcCCcEEEEecC-Ccc-----c--ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGG-DVA-----P--MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~-~l~-----~--~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.+|..|..+.++ ++. . .+.... ..|...+.---..|+++|||...-+ +
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~----~~f~~~~GPif~~ill~DEiNrapp------------k 77 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET----GEFEFRPGPIFTNILLADEINRAPP------------K 77 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT----TEEEEEE-TT-SSEEEEETGGGS-H------------H
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC----CeeEeecChhhhceeeecccccCCH------------H
Confidence 47999999999999988764 443 1 111110 0010000000026999999987633 2
Q ss_pred HHHHHHHHhc-----------cCCCCeEEEEecCCcc-----cccHHHhccc
Q psy4165 73 TLNAFLYRTG-----------EQSDKFMLVLASNTPQ-----QFDWAVNDRL 108 (242)
Q Consensus 73 ~l~~lL~~l~-----------~~~~~v~vI~tTn~~~-----~ld~al~~Rf 108 (242)
+.+.||..|. ..+.+.+||||-|..+ .|+.|++.||
T Consensus 78 tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 78 TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 3455555552 2345688999999877 7889998888
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.13 Score=43.72 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=54.4
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc-----HHHhcccccEEEeCCCCH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD-----WAVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~ 119 (242)
.|+++++||+..+.... .....+..++.+.. +.++.++.+|..+.+++ +++++-+...|-+..++.
T Consensus 220 ~~~~i~iDEa~~~~~~~-------~~~~~~~~~~~~~R--k~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~ 290 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSNP-------SGAEFLDELLREGR--KYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDS 290 (304)
T ss_pred ceEEEEeCCcccccccc-------chhhhhhHHHHHHH--hcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChH
Confidence 48999999999998653 23345556655554 44568889999999999 899999999999998887
Q ss_pred HHHH
Q psy4165 120 NERE 123 (242)
Q Consensus 120 ~~R~ 123 (242)
+...
T Consensus 291 ~~~~ 294 (304)
T PF12846_consen 291 DDAE 294 (304)
T ss_pred HHHH
Confidence 7766
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.047 Score=41.48 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=33.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec-CCcc------cccHHHhcccc-cEEEeCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS-NTPQ------QFDWAVNDRLD-EMVEFPL 116 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT-n~~~------~ld~al~~Rfd-~~i~~~~ 116 (242)
+..|||+|+|.+ +......+..+|...+ ..++-+|+++ ..+. .+++.|..||. ..|++|+
T Consensus 70 ~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 70 GGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp TSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred CCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 789999999999 3344555555555433 3334444444 3332 36666665654 4555543
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.45 Score=41.42 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhC------CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHH
Q psy4165 30 VTAIHKVFDWASSS------RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWA 103 (242)
Q Consensus 30 e~~l~~~f~~A~~~------~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~a 103 (242)
.+.=.+.|..++.. ..+-.|++||.|+... ...++|=..++.++.+.-+..-.|++..+-|+
T Consensus 110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------~AQnALRRviek~t~n~rF~ii~n~~~ki~pa 177 (360)
T KOG0990|consen 110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------DAQNALRRVIEKYTANTRFATISNPPQKIHPA 177 (360)
T ss_pred hHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------HHHHHHHHHHHHhccceEEEEeccChhhcCch
Confidence 34444556666631 2378999999999843 22333333455556666666778999999999
Q ss_pred HhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 104 VNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 104 l~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
++.||. .+.|.+.+.+.-...+.++...
T Consensus 178 ~qsRct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 178 QQSRCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred hhcccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 999997 6788888888888888888753
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.057 Score=47.50 Aligned_cols=146 Identities=17% Similarity=0.110 Sum_probs=76.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc-------------CCCCeEEEEecCCcc-------------c
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-------------Q 99 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-------------~ 99 (242)
..|++|||+|.+-. ..+ ..|+.-|+. .+.+.-|+|++|... .
T Consensus 122 ~GiccIDe~dk~~~---------~~~---~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 122 GGICCIDEFDKMKE---------DDR---DALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp TSEEEECTTTT--C---------HHH---HHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred Cceeeecccccccc---------hHH---HHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 68999999999832 222 334444421 133567889998777 5
Q ss_pred ccHHHhcccccEEEe-CCCCHHHHHHHHHHHHhccccchh-----hhcc-cccccCCCC-------------hh-HhHHH
Q psy4165 100 FDWAVNDRLDEMVEF-PLPTLNERERLVRLYFDKFVLQPA-----AQGK-RRLKVAPFD-------------YT-SLCSK 158 (242)
Q Consensus 100 ld~al~~Rfd~~i~~-~~P~~~~R~~Il~~~l~~~~~~~~-----~~~~-~~~~~~~~d-------------~~-~~l~~ 158 (242)
++++|++|||..+.+ ..|+.+.=..|.++.+........ .... ..++.+.+- ++ ...+.
T Consensus 190 l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~ 269 (331)
T PF00493_consen 190 LPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKEL 269 (331)
T ss_dssp S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHH
T ss_pred cchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 888999999988765 577877777777777665322210 0000 000000000 00 00011
Q ss_pred HHH-------------hCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 159 IAH-------------VTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 159 la~-------------~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
|.+ .....|.+.|+.+++-+++.+...-+..++.+|+..|+.-..
T Consensus 270 I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 270 IINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 111 112367778888888777777777778899999998886543
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG1968|consensus | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.29 Score=48.31 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=90.0
Q ss_pred hHHHHHHhcCCcEEEEecCCccccc------ch--HHHHHHHHH---HHHHhCCCc-EEEEEecccccccccCCCccchH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMG------SS--GVTAIHKVF---DWASSSRKG-LVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~------g~--~e~~l~~~f---~~A~~~~~p-~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
.|.++|.++|..++..+.++..++. |+ +...+...| ...+..+.+ .||+|||+|.++. ...+
T Consensus 373 ~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg----- 446 (871)
T KOG1968|consen 373 AAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRG----- 446 (871)
T ss_pred hHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhh-----
Confidence 4678899999999999999887642 22 112333333 111122223 4999999999975 1111
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
.-..+..+. . ...+-+|++.|........-+.|...-++|+.|+.+.+..-+..++..- ++.+.
T Consensus 447 ~v~~l~~l~---~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se----------~~ki~- 510 (871)
T KOG1968|consen 447 GVSKLSSLC---K--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSE----------GIKIS- 510 (871)
T ss_pred hHHHHHHHH---H--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhccc----------ceecC-
Confidence 122234443 2 2234567777776655554556666789999999998887777776531 22222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
...++++.+. +++||++....
T Consensus 511 ---~~~l~~~s~~----~~~DiR~~i~~ 531 (871)
T KOG1968|consen 511 ---DDVLEEISKL----SGGDIRQIIMQ 531 (871)
T ss_pred ---cHHHHHHHHh----cccCHHHHHHH
Confidence 2234666666 48899998873
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.28 Score=39.81 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHhCCCc-EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 27 SSGVTAIHKVFDWASSSRKG-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 27 g~~e~~l~~~f~~A~~~~~p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
|.+++.+-.++........+ .+|+|||.|.-+ +....+.+..+|..... .++=||.||..|.-||
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~L--------Hp~~q~~l~~~l~~~~~--~~~QviitTHSp~ild 303 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHL--------HPSWQRKLIELLKELSK--KNIQVIITTHSPFILD 303 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTS--------SHHHHHHHHHHHHHTGG--GSSEEEEEES-GGG--
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCC--------CHHHHHHHHHHHHhhCc--cCCEEEEeCccchhcC
Confidence 67777776677666655433 999999999887 34444444466655533 3557799999887664
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=4.3 Score=35.28 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=72.0
Q ss_pred HHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCcc---cccHHHh
Q psy4165 33 IHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQ---QFDWAVN 105 (242)
Q Consensus 33 l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~---~ld~al~ 105 (242)
+..++..+... +++-+|++++.+.+-.. .......|...+... ++.++|+.+++.++ .+...+.
T Consensus 46 ~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~---------~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~ 116 (326)
T PRK07452 46 AIQALNEAMTPPFGSGGRLVWLKNSPLCQGC---------SEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQ 116 (326)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCchhhccC---------CHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHH
Confidence 67788777543 24678899987554211 122334555556543 34455554555432 2333333
Q ss_pred cccccEEEeCCC---CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q psy4165 106 DRLDEMVEFPLP---TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS- 181 (242)
Q Consensus 106 ~Rfd~~i~~~~P---~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~- 181 (242)
. +....++..| +.++....++..+.+.+.. .+ ...+..|+..+. .|+..+.++.+..
T Consensus 117 k-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~g----~dl~~l~~EleKL~ 177 (326)
T PRK07452 117 K-LAEEKEFSLIPPWDTEGLKQLVERTAQELGVK----------LT----PEAAELLAEAVG----NDSRRLYNELEKLA 177 (326)
T ss_pred H-ceeEEEecCCCcccHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhC----ccHHHHHHHHHHHH
Confidence 3 3346666554 4555677777777764332 12 223355666543 3555554443333
Q ss_pred Hhh-hcCCCccHHHHHHHH
Q psy4165 182 AYA-SEDGVLTEAMVMSKV 199 (242)
Q Consensus 182 ~~~-~~~~~~~~~~~~~a~ 199 (242)
.++ ...+.+|.+++.+.+
T Consensus 178 ly~~~~~~~It~~~V~~~v 196 (326)
T PRK07452 178 LYAENSTKPISAEEVKALV 196 (326)
T ss_pred HhccCCCCccCHHHHHHHh
Confidence 332 234467777766553
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.29 Score=41.85 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=50.2
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHh---ccCC------CCeEEEEecCCcc---cccHHHhcccccEE
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT---GEQS------DKFMLVLASNTPQ---QFDWAVNDRLDEMV 112 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~~---~ld~al~~Rfd~~i 112 (242)
+.+|+||||+..-.+..-+. ....+++.+++..= +... .++.+|++.|... .|++.+++.|. .+
T Consensus 100 k~lv~fiDDlN~p~~d~ygt---q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~ 175 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGT---QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-IL 175 (272)
T ss_dssp SEEEEEEETTT-S---TTS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EE
T ss_pred cEEEEEecccCCCCCCCCCC---cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EE
Confidence 36899999997655433221 11233444444321 1111 2478888877533 48999999996 99
Q ss_pred EeCCCCHHHHHHHHHHHHhc
Q psy4165 113 EFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~ 132 (242)
.++.|+.+.-..|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999999998874
|
|
| >KOG0478|consensus | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.79 Score=43.76 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=43.6
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHh----------ccCCCCeEEEEecCCcc-------------cccH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT----------GEQSDKFMLVLASNTPQ-------------QFDW 102 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l----------~~~~~~v~vI~tTn~~~-------------~ld~ 102 (242)
..|-.|||+|.+- ...+.++-+.+.+= -..+.+.=|||+.|... .|+|
T Consensus 527 ~GiCCIDEFDKM~---------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lpp 597 (804)
T KOG0478|consen 527 NGICCIDEFDKMS---------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPP 597 (804)
T ss_pred CceEEchhhhhhh---------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCCh
Confidence 5688999999983 33455555554431 13345567889888443 5899
Q ss_pred HHhcccccEEEe-CCCCHH
Q psy4165 103 AVNDRLDEMVEF-PLPTLN 120 (242)
Q Consensus 103 al~~Rfd~~i~~-~~P~~~ 120 (242)
.|++|||.++-+ ..||..
T Consensus 598 tLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 598 TLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhhhhhcEEEEEecCcchh
Confidence 999999976544 455555
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=93.02 E-value=5.6 Score=34.58 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-CCCeEEEEecCCccc---c---cH
Q psy4165 33 IHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-SDKFMLVLASNTPQQ---F---DW 102 (242)
Q Consensus 33 l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-~~~v~vI~tTn~~~~---l---d~ 102 (242)
+..++..+... ++.-+|++++.+.+-.. .....+..+...++.. ...++++..++..+. + -+
T Consensus 61 ~~~l~~~~~t~~lF~~~klvii~~~~~l~~~--------~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k 132 (340)
T PRK05574 61 WDDVLEACQSLPLFSDRKLVELRLPEFLTGA--------KGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFK 132 (340)
T ss_pred HHHHHHHhhccCccccCeEEEEECCCCCCch--------hHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHH
Confidence 55555555543 23578889998876431 1223344555444212 223555555554332 1 22
Q ss_pred HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q psy4165 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS- 181 (242)
Q Consensus 103 al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~- 181 (242)
++..+. ..++++.|+..+....++.++.+.+.. .+ ...++.++..+. .|+..+.++....
T Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~~----~d~~~l~~El~KL~ 193 (340)
T PRK05574 133 ALKKKA-VVVEAQPPKEAELPQWIQQRLKQQGLQ----------ID----AAALQLLAERVE----GNLLALAQELEKLA 193 (340)
T ss_pred HHHhCc-eEEEcCCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhC----chHHHHHHHHHHHH
Confidence 333444 588899999999999999999875333 12 223355666644 3555554443333
Q ss_pred HhhhcCCCccHHHHHHHHHH
Q psy4165 182 AYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 182 ~~~~~~~~~~~~~~~~a~~~ 201 (242)
.++.... +|.+++.+.+..
T Consensus 194 l~~~~~~-It~~~I~~~i~~ 212 (340)
T PRK05574 194 LLYPDGK-ITLEDVEEAVPD 212 (340)
T ss_pred hhcCCCC-CCHHHHHHHHhh
Confidence 3333333 787777766443
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.5 Score=38.54 Aligned_cols=119 Identities=23% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHH--HHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh-cc-----CCCCeEEEEecCCcccccHH
Q psy4165 32 AIHKVFDW--ASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT-GE-----QSDKFMLVLASNTPQQFDWA 103 (242)
Q Consensus 32 ~l~~~f~~--A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l-~~-----~~~~v~vI~tTn~~~~ld~a 103 (242)
.....|+. .....+|-||+|||+|.++....- .... -.+|..+ .. .-.++.+|++......+...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~------~~dF-~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI------ADDF-FGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcch------HHHH-HHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 44444543 233345999999999999753111 1112 2233333 11 11233333322222222222
Q ss_pred Hh-ccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 104 VN-DRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 104 l~-~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.. +=| ...|+++.-+.++-..+++.|-... + ...++.|-..|.| -|-=++.+|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------------~----~~~~~~l~~~tgG-hP~Lv~~~~~ 241 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------------S----QEQLEQLMDWTGG-HPYLVQKACY 241 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------------C----HHHHHHHHHHHCC-CHHHHHHHHH
Confidence 21 223 3356677668999888888874321 1 1224777778877 4444444443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.23 Score=42.42 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=48.8
Q ss_pred hHHHHHHh---cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.|||++ .|..+++++..++.... ...+..+.+.+.... ++.+|+|||++.+... ......+-+
T Consensus 122 La~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~---~~dLLIIDDlg~~~~~-------~~~~~~Lf~ 191 (269)
T PRK08181 122 LAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD---KFDLLILDDLAYVTKD-------QAETSVLFE 191 (269)
T ss_pred HHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh---cCCEEEEeccccccCC-------HHHHHHHHH
Confidence 67788764 47788888888877643 112223444454443 2689999999876432 223344555
Q ss_pred HHHHhccCCCCeEEEEecCCc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~ 97 (242)
++....+. + -+|.|||.+
T Consensus 192 lin~R~~~--~-s~IiTSN~~ 209 (269)
T PRK08181 192 LISARYER--R-SILITANQP 209 (269)
T ss_pred HHHHHHhC--C-CEEEEcCCC
Confidence 55543222 2 467777765
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.36 Score=42.87 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhccC----C-------CCeEEEEecCCcc-------cccHHHhccc
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ----S-------DKFMLVLASNTPQ-------QFDWAVNDRL 108 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~----~-------~~v~vI~tTn~~~-------~ld~al~~Rf 108 (242)
.|+-|+|++.. ....+..||+.+++. . -..++|++||..+ ...+||++|+
T Consensus 238 Gi~~f~Ei~K~------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~ 305 (361)
T smart00763 238 GILEFVEMFKA------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRI 305 (361)
T ss_pred ceEEEeehhcC------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhce
Confidence 67777787765 234667777766411 1 1268899999883 7789999999
Q ss_pred ccEEEeCCC-CHHHHHHHHHHHHhc
Q psy4165 109 DEMVEFPLP-TLNERERLVRLYFDK 132 (242)
Q Consensus 109 d~~i~~~~P-~~~~R~~Il~~~l~~ 132 (242)
. .|.+|.| +..+-.+|.+..+..
T Consensus 306 ~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 306 I-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred E-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 8 9999988 778888888888764
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.2 Score=43.86 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
.+|+++||+...++.|..++. ....+.+++.... ..++-+|.+|..+..+|+.++
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk---~p~~vie~l~~hR--h~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDK---ERQPVIDWFLHAR--KLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred CcEEEEECcccccCCCCcCcC---CcHHHHHHHHHhc--cCCceEEEEcCCHHHHhHHHH
Confidence 689999999999999987541 2222344444433 445678888999999999996
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.74 Score=44.94 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec-CCcccccHHHhc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS-NTPQQFDWAVND 106 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT-n~~~~ld~al~~ 106 (242)
..+..+..+|.+...+.+|+.++|||.+.+- +......+.-|++.+ +.++.+|.+| ++|. +.-+=++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~-l~la~lR 179 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKHA---PENLTLVVTSRSRPQ-LGLARLR 179 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHhC---CCCeEEEEEeccCCC-Cccccee
Confidence 3445677788877777779999999999883 233555666665444 6677777777 4443 2211111
Q ss_pred ccccEEEeC----CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH-HHHHHH
Q psy4165 107 RLDEMVEFP----LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR-EIAKLG 175 (242)
Q Consensus 107 Rfd~~i~~~----~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a-di~~lv 175 (242)
-=|..++++ .-+.++-.++++.... .++++.+. +.|-.+|+|+..+ .+..+.
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------------l~Ld~~~~----~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGS-------------LPLDAADL----KALYDRTEGWAAALQLIALA 236 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCC-------------CCCChHHH----HHHHhhcccHHHHHHHHHHH
Confidence 113344444 2356777777766542 23444444 8899999997554 444443
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.3 Score=37.48 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=53.3
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+++|+||+++... .+..+...+.....+.-+|.||.... +-..+.+. ...++++..+.++-.++
T Consensus 102 ~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L~~~ea~~L 165 (287)
T PF00931_consen 102 RCLLVLDDVWDEE--------------DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPLSEEEALEL 165 (287)
T ss_dssp SEEEEEEEE-SHH--------------HH-------HCHHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS--HHHHHHH
T ss_pred cceeeeeeecccc--------------cccccccccccccccccccccccccc-cccccccc-ccccccccccccccccc
Confidence 8999999988752 22222222222222345666776532 32222222 56899999999999999
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLG 175 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv 175 (242)
|..+..... .....+.......|++.+.| .|--|..+.
T Consensus 166 ~~~~~~~~~-----------~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 166 FKKRAGRKE-----------SESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp HHHHHTSHS---------------TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccc-----------cccccccccccccccccccc-ccccccccc
Confidence 999975421 00111112234789999875 565555443
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=91.45 E-value=3.1 Score=35.01 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=58.9
Q ss_pred EEEEecCCcccccchHHHHHHHHHHHHHhCCCc---EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 14 YAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKG---LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 14 ~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p---~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
+++++.++-..- +..++--+.|.+-+-.-+| -||++||.|++.. ..++. +-.-|+-+++..-+
T Consensus 81 vLELNASdeRGI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------gAQQA---lRRtMEiyS~ttRF 146 (333)
T KOG0991|consen 81 VLELNASDERGI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------GAQQA---LRRTMEIYSNTTRF 146 (333)
T ss_pred hhhccCcccccc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------HHHHH---HHHHHHHHcccchh
Confidence 455555553221 3444545556665543323 5999999999842 11211 22223444555567
Q ss_pred EEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHH
Q psy4165 91 VLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLY 129 (242)
Q Consensus 91 I~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~ 129 (242)
..++|....|-..+.+|+- .+.|...+.++-..=+...
T Consensus 147 alaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred hhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHH
Confidence 7889999999999998875 5566656555544333333
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.74 Score=33.92 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec
Q psy4165 31 TAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS 94 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT 94 (242)
..+..+.+...... ..+|+|||+|.+. + ...++.+...++...-+++++|+.
T Consensus 74 ~l~~~~~~~l~~~~-~~~lviDe~~~l~-~----------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDALDRRR-VVLLVIDEADHLF-S----------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHCT-EEEEEEETTHHHH-T----------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHHHHhcC-CeEEEEeChHhcC-C----------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33444444555454 4699999999975 1 334444433345333345555554
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.37 Score=40.79 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=44.2
Q ss_pred hHHHHHHh---cCCcEEEEecCCcccccc--hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMGS--SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~g--~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.+|+.+ .|..++.++.+++..... .....+...+.. ..++.+|+|||++.+.. .......+-+
T Consensus 114 La~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~---l~~~dlLIIDD~g~~~~-------~~~~~~~L~~ 183 (254)
T PRK06526 114 LAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK---LGRYPLLIVDEVGYIPF-------EPEAANLFFQ 183 (254)
T ss_pred HHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH---hccCCEEEEcccccCCC-------CHHHHHHHHH
Confidence 56777665 366666666666654321 111122222222 23378999999988742 1223344555
Q ss_pred HHHHhccCCCCeEEEEecCCcc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
++....+. + -+|.|||.+-
T Consensus 184 li~~r~~~--~-s~IitSn~~~ 202 (254)
T PRK06526 184 LVSSRYER--A-SLIVTSNKPF 202 (254)
T ss_pred HHHHHHhc--C-CEEEEcCCCH
Confidence 55443222 2 3777888763
|
|
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=90.98 E-value=8.6 Score=33.47 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEecccccccccCCCc-----cchHHHHHHHHHHHHhc---cCCCCeEE--EEec---C
Q psy4165 31 TAIHKVFDWASSSRK--GLVLFIDEADAFLRKRSSET-----ISESLRATLNAFLYRTG---EQSDKFML--VLAS---N 95 (242)
Q Consensus 31 ~~l~~~f~~A~~~~~--p~Il~iDeiD~l~~~r~~~~-----~~~~~~~~l~~lL~~l~---~~~~~v~v--I~tT---n 95 (242)
..+..++++.+...+ |.++-||++..++....-.+ .+...-.+...|+..+. ...++.+| +++| +
T Consensus 140 ~~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~ 219 (309)
T PF10236_consen 140 DVFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSN 219 (309)
T ss_pred HHHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccc
Confidence 457777887776554 89999999999997632211 22233355566665532 33445454 5655 3
Q ss_pred Ccc--cccHHHhcccc---------------------cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 96 TPQ--QFDWAVNDRLD---------------------EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 96 ~~~--~ld~al~~Rfd---------------------~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
.+. .++.++.++=. ..|+++..+.+|-+.+++.|...
T Consensus 220 ~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 220 APKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred ccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 333 57777774322 27899999999999999999875
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.53 Score=39.60 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=49.2
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-c---hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-S---SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g---~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
||.|||+++ |..++.++.+++.... + ........+++... ...+|+|||++.... +......+
T Consensus 115 La~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~---~~dlLvIDDig~~~~-------s~~~~~~l 184 (244)
T PRK07952 115 LAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS---NVDLLVIDEIGVQTE-------SRYEKVII 184 (244)
T ss_pred HHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc---cCCEEEEeCCCCCCC-------CHHHHHHH
Confidence 678888887 7788888888876532 1 11112334444433 268999999988631 22233455
Q ss_pred HHHHHHhccCCCCeEEEEecCCc
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.+++..= +..+--+|.|||..
T Consensus 185 ~~Ii~~R--y~~~~~tiitSNl~ 205 (244)
T PRK07952 185 NQIVDRR--SSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHH--HhCCCCEEEeCCCC
Confidence 5554332 22234677788854
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.67 Score=39.28 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=45.8
Q ss_pred hHHHHHHh---cCCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHH---SGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e---~~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
||.+|+.+ .|..+..++..++...+ ......+..+|.... .. |.+++|||++..... ......+-+
T Consensus 118 La~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~-~dlLiiDdlg~~~~~-------~~~~~~lf~ 188 (259)
T PRK09183 118 LAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MA-PRLLIIDEIGYLPFS-------QEEANLFFQ 188 (259)
T ss_pred HHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cC-CCEEEEcccccCCCC-------hHHHHHHHH
Confidence 67777655 46777777777765332 111223455565443 22 789999999765322 112223444
Q ss_pred HHHHhccCCCCeEEEEecCCc
Q psy4165 77 FLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~ 97 (242)
++....+. + -+|.|||.+
T Consensus 189 li~~r~~~--~-s~iiTsn~~ 206 (259)
T PRK09183 189 VIAKRYEK--G-SMILTSNLP 206 (259)
T ss_pred HHHHHHhc--C-cEEEecCCC
Confidence 44333222 2 367788865
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.1 Score=38.17 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=29.4
Q ss_pred hHHHHHHhc----CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADA 56 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~ 56 (242)
|+.|||+++ |..+++++..++..........+...+.... ...+|+|||++.
T Consensus 133 La~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~---~~dlLiIDDl~~ 188 (266)
T PRK06921 133 LLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMK---KVEVLFIDDLFK 188 (266)
T ss_pred HHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEEecccc
Confidence 678888874 6777888776654322111111222222222 268999999944
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=5 Score=39.66 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=58.8
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
+++.++.+++........-.+..+|..... ..+|.++++||....+. .......+..++..+.+.+ ..+
T Consensus 608 ~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~-------~~~~~~~i~~~lk~~RK~~--~~~ 678 (800)
T PRK13898 608 RVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALID-------NPVFAPKIKDWLKVLRKLN--TFV 678 (800)
T ss_pred cEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCC-------CHHHHHHHHHHHHHHHHcC--CEE
Confidence 455566666654311112344455555431 23499999999998874 1234445566666664333 367
Q ss_pred EEecCCccccc-----HHHhcccccEEEeCCCCHH
Q psy4165 91 VLASNTPQQFD-----WAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 91 I~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~~ 120 (242)
|.+|..++.+. .+++.-....|.+|.|+..
T Consensus 679 i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn~~a~ 713 (800)
T PRK13898 679 IFATQSVEDASKSAISDTLVQQTATQIFLPNLKAT 713 (800)
T ss_pred EEEeCCHHHHHhChhHHHHHHhCCeEEEcCChhhH
Confidence 77887776644 4555677878888877643
|
|
| >PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold | Back alignment and domain information |
|---|
Probab=89.27 E-value=1 Score=41.13 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHHHHHh---CCCc-EEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc-
Q psy4165 32 AIHKVFDWASS---SRKG-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND- 106 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~- 106 (242)
.|.++|+..-+ ..+| -|+||||.+.+|... +......+.+....+ .+.+|-|...|.+|.+||..+++
T Consensus 238 LLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da-----~kall~~ieqvvrLI--RSKGVGv~fvTQ~P~DiP~~VL~Q 310 (502)
T PF05872_consen 238 LLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA-----PKALLDKIEQVVRLI--RSKGVGVYFVTQNPTDIPDDVLGQ 310 (502)
T ss_pred HHHHHHHhCccCCCCCCceEEEEEechhhhhcCC-----CHHHHHHHHHHHHHh--hccCceEEEEeCCCCCCCHHHHHh
Confidence 56677775443 3345 567799999998532 222223334444334 35567888889999999999994
Q ss_pred ---ccccEEEeCCCCHHHHHHH
Q psy4165 107 ---RLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 107 ---Rfd~~i~~~~P~~~~R~~I 125 (242)
|..+.+.-- ++.+++.+
T Consensus 311 LGnrIQHaLRAf--TP~DqKav 330 (502)
T PF05872_consen 311 LGNRIQHALRAF--TPKDQKAV 330 (502)
T ss_pred hhhHHHHHHhcC--CHhHHHHH
Confidence 555444433 44444443
|
This family is restricted to bacterial proteins, none of which have currently been characterised. |
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.3 Score=42.17 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=48.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCcc------c----ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVA------P----MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~------~----~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
||+|+|..+ .-.|+.++.+.+. + +.|.. ...++.+..+... -|||+|||||.- +.
T Consensus 607 lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e--~gg~LteavrrrP-~sVVLfdeIEkA---------h~ 674 (898)
T KOG1051|consen 607 LAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKE--EGGQLTEAVKRRP-YSVVLFEEIEKA---------HP 674 (898)
T ss_pred HHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccch--hHHHHHHHHhcCC-ceEEEEechhhc---------CH
Confidence 688999874 2368888877522 1 22332 3345566666443 699999999986 33
Q ss_pred HHHHHHHHHHHHhc------cC-----CCCeEEEEecCC
Q psy4165 69 SLRATLNAFLYRTG------EQ-----SDKFMLVLASNT 96 (242)
Q Consensus 69 ~~~~~l~~lL~~l~------~~-----~~~v~vI~tTn~ 96 (242)
. +++.|++-+| .+ -.+++||+|.|.
T Consensus 675 ~---v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 675 D---VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred H---HHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 3 4444444443 11 125899999875
|
|
| >KOG0481|consensus | Back alignment and domain information |
|---|
Probab=88.63 E-value=7.3 Score=36.39 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 166 LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 166 ~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.|.++|+++++-++..+-..-....|.++.++|+.-+.
T Consensus 603 ITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~ 640 (729)
T KOG0481|consen 603 ITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQ 640 (729)
T ss_pred eeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHh
Confidence 46778888887666666555566777888888876664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=4.5 Score=40.15 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccH-HHhcccccE
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDW-AVNDRLDEM 111 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~-al~~Rfd~~ 111 (242)
+..++........|.+|+|||++.+- .......+..|+..+ ..++.+|.++...-.++- .+. .-+..
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~l~-~~~~~ 176 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIANLR-VRDQL 176 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHhHH-hcCcc
Confidence 44445444443459999999999883 122344555555443 344444445543212221 111 11224
Q ss_pred EEeC----CCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 112 VEFP----LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 112 i~~~----~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
+++. +-+.++-.+++...+.. .++ ...+..+.+.|+|+-.+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-------------~~~----~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-------------PIE----AAESSRLCDDVEGWATA 221 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-------------CCC----HHHHHHHHHHhCChHHH
Confidence 4555 55888888888765432 111 33447788888887543
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.5 Score=36.89 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=45.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchH---HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSG---VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~---e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
||.|||+++ |..++.++.+++......+ .....++++... ...+|+|||+..... +......+.
T Consensus 117 La~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~---~~dLLiIDDlg~~~~-------s~~~~~~l~ 186 (248)
T PRK12377 117 LAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC---KVDLLVLDEIGIQRE-------TKNEQVVLN 186 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc---CCCEEEEcCCCCCCC-------CHHHHHHHH
Confidence 678888875 5678888877776522100 001223333332 368999999976532 122333444
Q ss_pred HHHHHhccCCCCeEEEEecCCc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.++..- +.+..-+|.|||..
T Consensus 187 ~ii~~R--~~~~~ptiitSNl~ 206 (248)
T PRK12377 187 QIIDRR--TASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHH--HhcCCCEEEEcCCC
Confidence 444332 22233567789864
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.25 E-value=11 Score=31.03 Aligned_cols=153 Identities=10% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHHh-cccc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAVN-DRLD 109 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al~-~Rfd 109 (242)
+.+.....+..+ |-+|++|- .+|...+ -+||.++. .....|++|-|.|..+.|-.+++ |-||
T Consensus 35 ~~ea~~~i~~~~-pDLILLDi---YmPd~~G-----------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~D 99 (224)
T COG4565 35 LEEAKMIIEEFK-PDLILLDI---YMPDGNG-----------IELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVD 99 (224)
T ss_pred HHHHHHHHHhhC-CCEEEEee---ccCCCcc-----------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchh
Confidence 333444445565 89999875 5554333 35777763 56678999999999999999999 8999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHH----------hCCCCCHHHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH----------VTEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~----------~t~g~s~adi~~lv~~a~ 179 (242)
..|. |-..+--.+-|..|..+...-.. .-.++. ..++.+-. .-.|.+..-+..++.
T Consensus 100 YLiK--Pf~~eRl~~aL~~y~~~r~~l~~-----~~~~sQ----~~lD~l~~~~~k~~~~~~LPkGi~~~Tl~~i~~--- 165 (224)
T COG4565 100 YLIK--PFTFERLQQALTRYRQKRHALES-----HQQLSQ----KELDQLFNIQSKEQPPDDLPKGLDELTLQKVRE--- 165 (224)
T ss_pred heec--ceeHHHHHHHHHHHHHHHHHHhh-----hcccCH----HHHHHHHhccccccCcccCCCCcCHHHHHHHHH---
Confidence 5542 33444444555555543210000 000111 01111111 224677777776664
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHHhhhhhhhccccc
Q psy4165 180 ASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQ 216 (242)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (242)
+ +......+|.+.+.+++.-.-...++-.+|....
T Consensus 166 ~--~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~ 200 (224)
T COG4565 166 A--LKEPDQELTAEELAQALGISRVTARRYLEYLVSN 200 (224)
T ss_pred H--HhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhc
Confidence 1 1133446777777777665544444445554443
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.86 E-value=4.1 Score=37.49 Aligned_cols=64 Identities=34% Similarity=0.396 Sum_probs=42.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-------------cCCCCeEEEEecC-----------------
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-------------EQSDKFMLVLASN----------------- 95 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-------------~~~~~v~vI~tTn----------------- 95 (242)
..||||||+=.+ .+++++.|-.=|+ .+..++.+|++||
T Consensus 284 ~GVLFLDElpef------------~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~ 351 (490)
T COG0606 284 NGVLFLDELPEF------------KRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCS 351 (490)
T ss_pred CCEEEeeccchh------------hHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCC
Confidence 379999998555 3355666554443 1233567777877
Q ss_pred ------CcccccHHHhcccccEEEeCCCCHHH
Q psy4165 96 ------TPQQFDWAVNDRLDEMVEFPLPTLNE 121 (242)
Q Consensus 96 ------~~~~ld~al~~Rfd~~i~~~~P~~~~ 121 (242)
+...|...|++|||..++++.++..+
T Consensus 352 ~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 352 PRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred HHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 23455667779999999999887433
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=86.57 E-value=2.6 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHhCCCcEEEEEecccccccccCC--CccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc
Q psy4165 37 FDWASSSRKGLVLFIDEADAFLRKRSS--ETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 37 f~~A~~~~~p~Il~iDeiD~l~~~r~~--~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
+..+.... |.+|+|||+..+...... ........+.+..++..+... ++.+|++++...
T Consensus 78 ~~~~~~~~-~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~vv~~~~~~~ 138 (165)
T cd01120 78 ERLRERGG-DDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG--GVTVIFTLQVPS 138 (165)
T ss_pred HHHHhCCC-CEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CceEEEEEecCC
Confidence 44455444 999999999998754321 111223445555555555433 455555554443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13853 type IV secretion system protein VirB4; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=5.1 Score=39.59 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred cEEEEecCCcccccchHHHHHHHHHHHHHh--CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEE
Q psy4165 13 DYAIMTGGDVAPMGSSGVTAIHKVFDWASS--SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFML 90 (242)
Q Consensus 13 ~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~v 90 (242)
.++.++.+++........-.+..+|..... ..+|.+|+|||+..++.. ......+..+++.+.+.+ .++
T Consensus 593 ~~~~fdl~~L~~~~~~~~~vl~yl~~ri~~~~~gr~~ii~iDEaw~~l~~-------~~~~~~i~~~~kt~RK~n--g~~ 663 (789)
T PRK13853 593 SITGFDMTHLLEYEEVCAPAAAYLLHRIGAMVDGRRFVMSCDEFRAYLLN-------PKFAAVVDKFLLTVRKNN--GML 663 (789)
T ss_pred CeEEEEchHhcCChhhHHHHHHHHHHHHHHhcCCCcEEEEEechhHHhCC-------HHHHHHHHHHHHHHHHcC--eEE
Confidence 355566656554211111233344444322 235999999999888752 224456667776665444 377
Q ss_pred EEecCCccccc-----HHHhcccccEEEeCCCCH
Q psy4165 91 VLASNTPQQFD-----WAVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 91 I~tTn~~~~ld-----~al~~Rfd~~i~~~~P~~ 119 (242)
+++|..+.++- .+++.-.+.+|.+|.|..
T Consensus 664 ~~~TQs~~D~~~s~~~~~i~~n~~t~I~Lpn~~a 697 (789)
T PRK13853 664 ILATQQPEHVLESPLGASLVAQCMTKIFYPSPTA 697 (789)
T ss_pred EEecCCHHHHHcCchHHHHHHhCCeEEEcCCccc
Confidence 78887777664 345567888999988853
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=85.95 E-value=23 Score=30.97 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCc---ccccHHHh-
Q psy4165 33 IHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTP---QQFDWAVN- 105 (242)
Q Consensus 33 l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~---~~ld~al~- 105 (242)
+.++++.+.... .+.+|++.+.+ ......+..++... .+..++| ...... ..+-..+.
T Consensus 66 ~~~~~~~~~t~slF~~~rlViv~~~~------------~~~~~~L~~~l~~~--~~~~~li-l~~~~~~~~~kl~k~~~~ 130 (343)
T PRK06585 66 PARLEDEANAISLFGGRRLIWVRAGS------------KNLAAALKALLESP--PGDAFIV-IEAGDLKKGSSLRKLFET 130 (343)
T ss_pred HHHHHHHHhCCCCCCCceEEEEECCc------------hhHHHHHHHHHcCC--CCCcEEE-EEcCCCCcccHHHHHHhc
Confidence 667777777642 35778887421 11122333343222 2333444 443322 12223332
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYAS 185 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~ 185 (242)
......+.+.+|+..+....++..+.+.+.. .+ ...+..|+..+.| .-..+.+-+. +...++.
T Consensus 131 ~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~----------i~----~~a~~~L~~~~g~-dl~~l~~Ele--KL~ly~~ 193 (343)
T PRK06585 131 AAYAAAIPCYADDERDLARLIDDELAEAGLR----------IT----PDARALLVALLGG-DRLASRNEIE--KLALYAH 193 (343)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHCCCC----------CC----HHHHHHHHHHhCC-CHHHHHHHHH--HHHHhcC
Confidence 1123467778899999999999999875433 22 3334667777543 3334444333 3444544
Q ss_pred cCCCccHHHHHHH
Q psy4165 186 EDGVLTEAMVMSK 198 (242)
Q Consensus 186 ~~~~~~~~~~~~a 198 (242)
..+.+|.+++.+.
T Consensus 194 ~~~~It~edV~~l 206 (343)
T PRK06585 194 GKGEITLDDVRAV 206 (343)
T ss_pred CCCCCCHHHHHHH
Confidence 4557888777665
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.4 Score=36.94 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc--chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH-HHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR-ATLN 75 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~--g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~-~~l~ 75 (242)
||.|||+++ |.++..+..+++.... .-....+.+.+...+ +..+|+|||+..-.. +...+ .++.
T Consensus 172 La~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~---~~dlLiIDDiG~e~~-------s~~~~~~ll~ 241 (306)
T PRK08939 172 LLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK---EAPVLMLDDIGAEQM-------SSWVRDEVLG 241 (306)
T ss_pred HHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc---CCCEEEEecCCCccc-------cHHHHHHHHH
Confidence 678888886 7888888887775432 111112344444444 268999999865421 22222 3444
Q ss_pred HHHHHhccCCCCeEEEEecCCc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTP 97 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~ 97 (242)
.++..= ..++.-+|.|||.+
T Consensus 242 ~Il~~R--~~~~~~ti~TSNl~ 261 (306)
T PRK08939 242 VILQYR--MQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHH--HHCCCeEEEECCCC
Confidence 444321 12344788899865
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=84.45 E-value=24 Score=33.10 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=67.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC-CeEEEEe-c------CCcc--------cccHHHh--cc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD-KFMLVLA-S------NTPQ--------QFDWAVN--DR 107 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~-~v~vI~t-T------n~~~--------~ld~al~--~R 107 (242)
+.||+|||+=.++... ....+..+.++ +..... ++|+|.| | |... .+++.++ .+
T Consensus 133 ~kvILVEDlPN~~~~~-----~~~f~~~L~~~---l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~ 204 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRD-----TSRFREALRQY---LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG 204 (519)
T ss_pred ceEEEeeccccccchh-----HHHHHHHHHHH---HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC
Confidence 7899999998765421 12223333333 333333 7777777 1 2111 4677777 34
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 108 LDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
. .+|.|.+-...--..-|+..+....... .+ ..... +....++.|+.. +.+||+.+++..+..+.
T Consensus 205 i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~--~~--~~~~p--~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 205 I-TRIKFNPIAPTFMKKALKRILKKEARSS--SG--KNKVP--DKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred c-eEEEecCCCHHHHHHHHHHHHHHHhhhh--cC--CccCC--ChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 4 4899998888877777777765420000 00 01111 111224677766 55799999986665555
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=83.76 E-value=3.5 Score=36.27 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccch----HHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSS----GVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||.|||+++ |..+++++..++...... ........++.... .-+|+|||+....
T Consensus 199 La~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~---~DLLIIDDlG~e~ 259 (329)
T PRK06835 199 LSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN---CDLLIIDDLGTEK 259 (329)
T ss_pred HHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc---CCEEEEeccCCCC
Confidence 688888875 678888888887653211 11111222333332 5799999997653
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=82.08 E-value=3.3 Score=39.21 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=62.0
Q ss_pred hHHHHHHhcC--CcEEEEecCCcccccchHH--HHHHHHHHHHHh--------CCCcEEEEEecccccccccCCCccchH
Q psy4165 2 FAKKLAHHSG--MDYAIMTGGDVAPMGSSGV--TAIHKVFDWASS--------SRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 2 lA~aiA~e~~--~~~~~v~~~~l~~~~g~~e--~~l~~~f~~A~~--------~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
|||+|=...+ -||+.|+|..+-...-++| ..+.-.|.-|+. .+..-.+|+|||..+ .-.
T Consensus 352 laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~---------p~~ 422 (606)
T COG3284 352 LARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDM---------PLA 422 (606)
T ss_pred HHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhhc---------hHH
Confidence 5666655544 3899999876642110100 011111221211 112578999999776 233
Q ss_pred HHHHHHHHHHH-----hccC--CCCeEEEEecCCcccccHHHh-ccc---------ccEEEeCCC-CHHHHHHHHHHHHh
Q psy4165 70 LRATLNAFLYR-----TGEQ--SDKFMLVLASNTPQQFDWAVN-DRL---------DEMVEFPLP-TLNERERLVRLYFD 131 (242)
Q Consensus 70 ~~~~l~~lL~~-----l~~~--~~~v~vI~tTn~~~~ld~al~-~Rf---------d~~i~~~~P-~~~~R~~Il~~~l~ 131 (242)
.+.-+...|++ ++.. .=.|=||+||++. |-.-+. ||| ...|++|+. +..+|..+|.+++.
T Consensus 423 ~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~ 500 (606)
T COG3284 423 LQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILK 500 (606)
T ss_pred HHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHH
Confidence 33333334433 1211 1137889999874 332222 666 334555544 55666777888877
Q ss_pred c
Q psy4165 132 K 132 (242)
Q Consensus 132 ~ 132 (242)
+
T Consensus 501 ~ 501 (606)
T COG3284 501 R 501 (606)
T ss_pred H
Confidence 5
|
|
| >KOG0479|consensus | Back alignment and domain information |
|---|
Probab=81.64 E-value=2.7 Score=39.74 Aligned_cols=43 Identities=21% Similarity=0.035 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 163 TEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 163 t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
|.-.|++.|+.|++-+.|.+.+.-...++.+|-+.|++-....
T Consensus 603 t~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA 645 (818)
T KOG0479|consen 603 TSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFA 645 (818)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHH
Confidence 3346888999999866666666666678888888886655433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=81.55 E-value=9.5 Score=39.37 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
++.+|++||+|.. ..+..+....+....+.-||.||.+...+. ....+..++++.|+.++..+
T Consensus 296 krvLLVLDdv~~~--------------~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~---~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 296 RKVLIFIDDLDDQ--------------DVLDALAGQTQWFGSGSRIIVITKDKHFLR---AHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred CeEEEEEeCCCCH--------------HHHHHHHhhCccCCCCcEEEEEeCcHHHHH---hcCCCeEEEecCCCHHHHHH
Confidence 3799999998753 122333222222223345666776543221 13467899999999999999
Q ss_pred HHHHHHh
Q psy4165 125 LVRLYFD 131 (242)
Q Consensus 125 Il~~~l~ 131 (242)
++..+.-
T Consensus 359 LF~~~Af 365 (1153)
T PLN03210 359 MFCRSAF 365 (1153)
T ss_pred HHHHHhc
Confidence 9988864
|
syringae 6; Provisional |
| >KOG0482|consensus | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.1 Score=41.61 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=48.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHH-Hh-ccCCCCeEEEEecCCcc-------------cccHHHhccccc
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLY-RT-GEQSDKFMLVLASNTPQ-------------QFDWAVNDRLDE 110 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~-~l-~~~~~~v~vI~tTn~~~-------------~ld~al~~Rfd~ 110 (242)
..|-.|||+|.+...... ..++.+.+..-.+-+ .+ ..-+.+.-++|++|..+ .||.||++|||.
T Consensus 440 ~GICCIDEfDKM~e~DRt-AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 440 GGICCIDEFDKMDESDRT-AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred CceEeehhhhhhhhhhhH-HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhh
Confidence 468899999998642111 011111111111100 01 12244567778887654 689999999997
Q ss_pred EEEeC-CCCHHHHHHHHHHHH
Q psy4165 111 MVEFP-LPTLNERERLVRLYF 130 (242)
Q Consensus 111 ~i~~~-~P~~~~R~~Il~~~l 130 (242)
..-+. .|+.+.=..+-++.+
T Consensus 519 l~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 519 LWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hhhhccCCcccchHHHHHHhH
Confidence 66554 787777666666644
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 242 | ||||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 8e-07 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 9e-07 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 9e-06 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 2e-05 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 4e-05 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 5e-05 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 7e-05 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 8e-05 | ||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 1e-04 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 1e-04 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 1e-04 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 8e-04 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 9e-04 |
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-13
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFL-----YRTGEQSDKFMLVLASNTPQQFDW 102
++FIDE D+ L +RSS E+ R FL D+ +++ A+N PQ+ D
Sbjct: 116 IIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174
Query: 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV 162
A R + V LP RE L+ K+ + L
Sbjct: 175 AALRRFTKRVYVSLPDEQTRELLLNRLL----------QKQGSPLDTEALRRLAKI---- 220
Query: 163 TEGLSGREIAKL 174
T+G SG ++ L
Sbjct: 221 TDGYSGSDLTAL 232
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 19/131 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVL-ASNTPQQFDWA 103
++FID+ D+ L +R ++ R FL D +LV+ A+N PQ+ D A
Sbjct: 210 IIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
V R + V LP R L++ K+ + + L T
Sbjct: 269 VLRRFIKRVYVSLPNEETRLLLLKNLL----------CKQGSPLTQKELAQLARM----T 314
Query: 164 EGLSGREIAKL 174
+G SG ++ L
Sbjct: 315 DGYSGSDLTAL 325
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FIDE D+ RS E SE+ R FL + G +D +++ A+N P D A+
Sbjct: 108 IIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R ++ + PLP + R + +L+ G + + D+ L T+
Sbjct: 167 RRRFEKRIYIPLPEPHARAAMFKLHL----------GTTQNSLTEADFREL----GRKTD 212
Query: 165 GLSGREIAKL 174
G SG +I+ +
Sbjct: 213 GYSGADISII 222
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-11
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVL-ASNTPQQFDWA 103
V+FIDE D+ L +R ES R FL + S+ +LV+ A+N PQ+ D A
Sbjct: 179 VIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237
Query: 104 VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT 163
RL + + PLP + R+++V K + ++ + + + +
Sbjct: 238 ARRRLVKRLYIPLPEASARKQIVINLM----------SKEQCCLSEEEIEQIVQQ----S 283
Query: 164 EGLSGREIAKL 174
+ SG ++ +L
Sbjct: 284 DAFSGADMTQL 294
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 3e-11
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FIDE D+ RS E SE+ R FL + G +D +++ A+N P D A+
Sbjct: 230 IIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R ++ + PLP + R + RL+ G + + D+ L T+
Sbjct: 289 RRRFEKRIYIPLPEAHARAAMFRLHL----------GSTQNSLTEADFQEL----GRKTD 334
Query: 165 GLSGREIAKL 174
G SG +I+ +
Sbjct: 335 GYSGADISII 344
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FID+ DA R SE+ R L + G S +++ A+N P Q D A+
Sbjct: 113 IIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + G + DY + +TE
Sbjct: 172 RRRFERRIYIPLPDLAARTTMFEINV----------GDTPCVLTKEDY----RTLGAMTE 217
Query: 165 GLSGREIAKL 174
G SG +IA +
Sbjct: 218 GYSGSDIAVV 227
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-10
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 48 VLFIDEADAFLRKRSSETISESLRATLNAFLYR---TGEQSDKFMLVLASNTPQQFDWAV 104
++FID+ DA R SE+ R L + G S +++ A+N P Q D A+
Sbjct: 146 IIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 204
Query: 105 NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE 164
R + + PLP L R + + G + DY + +TE
Sbjct: 205 RRRFERRIYIPLPDLAARTTMFEINV----------GDTPSVLTKEDY----RTLGAMTE 250
Query: 165 GLSGREIAKL 174
G SG +IA +
Sbjct: 251 GYSGSDIAVV 260
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 32/241 (13%), Positives = 71/241 (29%), Gaps = 47/241 (19%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASS-SRKGL--VLFIDEAD 55
+ + G++ +M+ G++ G I + + A+ RKG LFI++ D
Sbjct: 51 FQCELVFRKMGINPIMMSAGELESGNAGEPA-KLIRQRYREAAEIIRKGNMCCLFINDLD 109
Query: 56 AFLRKRSSETISESLRATLNAFL--------------YRTGEQSDKFMLVLASNTPQQFD 101
A + T +NA L +++ + +++ N
Sbjct: 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLY 169
Query: 102 WAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKI 159
+ + R+++ P +R + F D +
Sbjct: 170 APLIRDGRMEKFYWAPTR--EDRIGVCTGIFRT------------------DNVPA-EDV 208
Query: 160 AHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVRWQSEQESP 219
+ + G+ I G A D + + + + +E E P
Sbjct: 209 VKIVDNFPGQSIDFFG----ALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQP 264
Query: 220 E 220
+
Sbjct: 265 K 265
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 1 MFAKKLAHHSGMDYAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ A+ +A+ +G + ++ G + ++ + + + K F+ A + ++ FIDE DA
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII-FIDELDAIAP 311
Query: 60 KRSSET--ISESLRATLNAFLYRTGEQSDKFMLVL-ASNTPQQFDWAVN--DRLDEMVEF 114
KR + + + L + G + ++V+ A+N P D A+ R D V+
Sbjct: 312 KREKTHGEVERRIVSQLLTLM--DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP-FDYTSLCSKIAHVTEGLSGREIAK 173
+P R +++++ + +K+A D ++A+ T G G ++A
Sbjct: 370 GIPDATGRLEILQIHT------------KNMKLADDVDL----EQVANETHGHVGADLAA 413
Query: 174 L 174
L
Sbjct: 414 L 414
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 32 AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRAT---LNAFLYRT---GEQS 85
+ ++FD A + VLF DE D+ + R + A +N L T G +
Sbjct: 96 NVREIFDKARQAAP-CVLFFDELDSIAKARGGNI-GDGGGAADRVINQIL--TEMDGMST 151
Query: 86 DKFMLVL-ASNTPQQFDWAV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK 142
K + ++ A+N P D A+ RLD+++ PLP R +++ K +
Sbjct: 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---- 207
Query: 143 RRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174
L +A +T G SG ++ ++
Sbjct: 208 ----------VDL-EFLAKMTNGFSGADLTEI 228
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 48 VLFIDEADAFLRKRSSETISES---LRATLNAFLYRT-GEQSDKFMLVLAS-NTPQQFDW 102
+++IDE DA +KRS+ S TLN L G + ++VLAS N D
Sbjct: 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160
Query: 103 AV--NDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIA 160
A+ RLD V LPTL ER + + + LK+ T ++A
Sbjct: 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHL------------KSLKLTQ-SSTFYSQRLA 207
Query: 161 HVTEGLSGREIAKL 174
+T G SG +IA +
Sbjct: 208 ELTPGFSGADIANI 221
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 35/175 (20%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPM--GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58
A K+A S + + D ++ A+ K+FD A S+ + +D+ + L
Sbjct: 79 ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS-CVVVDDIERLL 137
Query: 59 RKRSS-ETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEM------ 111
S + L L + Q K +++ ++ D L EM
Sbjct: 138 DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK--------DVLQEMEMLNAF 189
Query: 112 -VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG 165
+P + E+L+ L+ + F + IA +G
Sbjct: 190 STTIHVPNIATGEQLLE------ALE---------LLGNFKDKER-TTIAQQVKG 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 242 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.96 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.96 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.96 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.96 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.95 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.95 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.95 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.95 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.95 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.94 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.94 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.94 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.94 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.92 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.92 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.92 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.91 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.9 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.89 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.86 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.8 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.7 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.68 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.59 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.59 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.56 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.56 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.54 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.5 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.5 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.45 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.43 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.42 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.4 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.39 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.38 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.38 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.37 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.37 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.34 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.31 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.3 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.29 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.29 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.28 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.27 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.26 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.25 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.23 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.23 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.22 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.22 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.22 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.2 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.19 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.18 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.18 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.16 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.15 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.14 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.1 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.1 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.09 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.07 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.07 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 99.05 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 98.99 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 98.95 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 98.93 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.88 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 98.77 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.76 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 98.74 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 98.72 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.72 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 98.66 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 98.65 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 98.59 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 98.44 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.3 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 98.29 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 98.18 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.1 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.01 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 97.94 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 97.86 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 97.71 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 97.71 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 97.64 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 97.33 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.14 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.9 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 96.73 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 96.64 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.2 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.68 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.67 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 93.81 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.25 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.11 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 91.66 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 87.97 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 85.69 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 84.56 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 83.53 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=294.60 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=167.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|+|+++|++|+.++++++.++| |++++.++++|..|+..+ ||||||||+|+++++|...+. +....+++++|
T Consensus 197 llAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~l 275 (405)
T 4b4t_J 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLEL 275 (405)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 999999999999998866543 34567899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|+||||||+|+.||||++ ||||++|+|++|+.++|.+||+.|++++++. .++|+
T Consensus 276 L~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-----------~dvdl- 343 (405)
T 4b4t_J 276 LNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-----------RGINL- 343 (405)
T ss_dssp HHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-----------SSCCH-
T ss_pred HHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-----------ccCCH-
Confidence 99997 45668999999999999999999 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.||+.|+||||+||+++|++|...+.......++.+||+.|+.++...
T Consensus 344 ---~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 344 ---RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 9999999999999999999966555555666689999999999998754
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=289.80 Aligned_cols=195 Identities=19% Similarity=0.332 Sum_probs=170.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
|||+|||++++++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|.++++|...+. .....+.+++|
T Consensus 258 lLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~l 336 (467)
T 4b4t_H 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLEL 336 (467)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHH
Confidence 58999999999999999999999977 999999999999999998 999999999999999876543 34567888999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ ...++|+||+|||+|+.|||||+ ||||++|+|++|+.++|.+||+.|++++++. .++|+
T Consensus 337 L~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-----------~dvdl- 404 (467)
T 4b4t_H 337 ITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-----------RGIRW- 404 (467)
T ss_dssp HHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SSCCH-
T ss_pred HHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CCCCH-
Confidence 99997 44568999999999999999999 5999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKVR 211 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (242)
+.||+.|+||||+||+++|++|...+.......++.+||+.|+++++.+..++..
T Consensus 405 ---~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~ 459 (467)
T 4b4t_H 405 ---ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 459 (467)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC---
T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchh
Confidence 8999999999999999999977666666677789999999999999887655433
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=289.55 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=167.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|||++++++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+ .+....+.+++|
T Consensus 231 lLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~L 309 (437)
T 4b4t_I 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 309 (437)
T ss_dssp HHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHH
Confidence 58999999999999999999999977 999999999999999998 99999999999999986544 234577889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ...++|+||+|||+|+.|||||+ ||||++|+|++|+.++|.+||+.|++++++. +++|+
T Consensus 310 L~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-----------~dvdl- 377 (437)
T 4b4t_I 310 LNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-----------EDVNL- 377 (437)
T ss_dssp HHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SCCCH-
T ss_pred HHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-----------CcCCH-
Confidence 99997 45568999999999999999999 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.||+.|+|||||||+++|++|...+.......++.+||+.|++++...
T Consensus 378 ---~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 378 ---ETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp ---HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 8999999999999999999976666666666789999999999988754
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=285.73 Aligned_cols=189 Identities=22% Similarity=0.357 Sum_probs=166.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
|||+|||+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+ .+....+++++|
T Consensus 230 llAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~l 308 (437)
T 4b4t_L 230 LLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308 (437)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 99999999999999986654 234577889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ ...++|+||+|||+|+.|||||+ ||||++|+||+|+.++|.+||+.|+++++.. .++|+
T Consensus 309 L~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~d~dl- 376 (437)
T 4b4t_L 309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----------GEFDF- 376 (437)
T ss_dssp HHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----------SCCCH-
T ss_pred HHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----------cccCH-
Confidence 99997 34457999999999999999998 7899999999999999999999999875332 35666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+.+|+.|+||||+||+++|++|...+.......++.+||..|++++...
T Consensus 377 ---~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 377 ---EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp ---HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999966555555666789999999999987643
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=289.33 Aligned_cols=187 Identities=20% Similarity=0.336 Sum_probs=165.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc--hHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS--ESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~--~~~~~~l~~l 77 (242)
|||+|+|+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|+++++|...+.+ ....+.+++|
T Consensus 230 llAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~l 308 (434)
T 4b4t_M 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLEL 308 (434)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999998 9999999999999998765433 3467889999
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+. ..++|+||||||+|+.||||++ ||||++|+||+|+.++|.+||+.|++++++. .++|+
T Consensus 309 L~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~dvdl- 376 (434)
T 4b4t_M 309 LNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-----------DDINW- 376 (434)
T ss_dssp HHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-----------SCCCH-
T ss_pred HHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CcCCH-
Confidence 999973 4567999999999999999998 6999999999999999999999999875432 34666
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.||+.|+||||+||+++|++|...+.......++.+||.+|+.++.
T Consensus 377 ---~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 377 ---QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp ---HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 89999999999999999999776666666677899999999997764
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=277.62 Aligned_cols=187 Identities=22% Similarity=0.308 Sum_probs=164.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+|+|+++|++|+.++++++.++| |++++.++.+|..|+..+ ||||||||+|++++.|.... .+....+++++|
T Consensus 221 ~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~l 299 (428)
T 4b4t_K 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIEL 299 (428)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHH
Confidence 58999999999999999999999877 999999999999999998 99999999999999985543 244577899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeC-CCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFP-LPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~-~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
|++|+ ....+|+||||||+|+.||||++ ||||++|+|| +|+.++|..||+.+++++++. .++|+
T Consensus 300 L~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-----------~~~dl 368 (428)
T 4b4t_K 300 LTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-----------PEADL 368 (428)
T ss_dssp HHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-----------TTCCH
T ss_pred HHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-----------cccCH
Confidence 99997 45567999999999999999999 6999999996 899999999999999875432 34666
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.||..|+|||||||+++|++|...+.......++++||++|+...+
T Consensus 369 ----~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 369 ----DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp ----HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred ----HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 89999999999999999999766566666667899999999997764
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=286.94 Aligned_cols=188 Identities=20% Similarity=0.313 Sum_probs=125.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
|+|+|+|++++++|+.++++++.++| |++|++++++|..|+..+ ||||||||||+++++|+.. +.++...+++++|
T Consensus 526 ~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~l 604 (806)
T 3cf2_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHH
T ss_pred HHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHH
Confidence 58999999999999999999999987 999999999999999888 9999999999999998653 2345567899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|| ....+|+||||||+|+.||+|++ ||||+.|+|++|+.++|.+||+.++++.++. .++|+
T Consensus 605 L~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----------~~~dl- 672 (806)
T 3cf2_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----------KDVDL- 672 (806)
T ss_dssp HHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----------CC----
T ss_pred HHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----------CCCCH-
Confidence 99997 44567999999999999999999 5999999999999999999999999864332 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-------------------------CCCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASE-------------------------DGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~~ 204 (242)
+.||+.|+||||+||+++|++|...+.... ...++++||++|+..+..
T Consensus 673 ---~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 673 ---EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 899999999999999999996654443210 014788888888877754
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=260.11 Aligned_cols=185 Identities=22% Similarity=0.323 Sum_probs=157.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|||++|+++|++|+.++++++.+++ |++++.++.+|+.|+.++ ||||||||||.++++|.+.+ ++..++++++||.
T Consensus 253 ~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~ 330 (806)
T 3cf2_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 330 (806)
T ss_dssp HHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHT
T ss_pred HHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHH
Confidence 58999999999999999999999876 999999999999999888 99999999999999987655 4456788999999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ...++|+||+|||+++.||++++ ||||+.|+|++|+.++|.+||+.+++++++. .++|+
T Consensus 331 ~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----------~dvdl--- 396 (806)
T 3cf2_A 331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----------DDVDL--- 396 (806)
T ss_dssp HHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----------TTCCH---
T ss_pred HHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----------cccCH---
Confidence 997 34567999999999999999999 5999999999999999999999999864332 45666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-----------------CCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASE-----------------DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-----------------~~~~~~~~~~~a~~~~ 202 (242)
..||.+|+||+|+||.++|++|...+.... ...++.+||..|+...
T Consensus 397 -~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 397 -EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp -HHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred -HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 899999999999999999996654443221 1146677888777654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=213.39 Aligned_cols=166 Identities=21% Similarity=0.342 Sum_probs=144.8
Q ss_pred ChHHHHHHhc-CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHS-GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~-~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
+||+++|+++ +.+|+.++++++.+++ |++++.++.+|..++..+ |+||||||+|.+++.+.... .+...+++++||
T Consensus 60 ~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll 137 (322)
T 1xwi_A 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFL 137 (322)
T ss_dssp HHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHH
Confidence 4899999999 8999999999999876 999999999999999887 99999999999999887654 455778899999
Q ss_pred HHhcc---CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
..|+. ...+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.+
T Consensus 138 ~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----------l~----~~~ 203 (322)
T 1xwi_A 138 VQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----------LT----EAD 203 (322)
T ss_dssp HHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----------CC----HHH
T ss_pred HHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----------CC----HHH
Confidence 99963 45689999999999999999999999999999999999999999999764221 22 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..|++.|+||||+||.++|+.|...+
T Consensus 204 l~~la~~t~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 204 FRELGRKTDGYSGADISIIVRDALMQP 230 (322)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999665443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=227.52 Aligned_cols=189 Identities=20% Similarity=0.297 Sum_probs=156.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||+++|+++++||+.++++++..++ |.++..++.+|..|+..+ ||||||||+|.+.++++.. +......+.+++|
T Consensus 64 ~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 64 LLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 48999999999999999999999866 889999999999999887 9999999999999887642 2233456788999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ ....+++||+|||+++.||++++ +|||+.|+|++|+.++|.+||+.++++.++. +++++
T Consensus 143 L~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-----------~~v~l- 210 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-----------EDVNL- 210 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-----------chhhH-
Confidence 99996 33457999999999999999998 6999999999999999999999999864322 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..++..|+||+|+||.++|+.|...+.......++.+++..++.++..+
T Consensus 211 ---~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 211 ---EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred ---HHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 7899999999999999999955544444445689999999999988654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.69 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=139.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++.+|+.++++++.+++ |++++.++.+|..++... |+||||||+|.+.+.+.... .....+++++||.
T Consensus 66 ~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 143 (322)
T 3eie_A 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLV 143 (322)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999887 99999999999998875543 3345677888888
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+ ....+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.++
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----------~~----~~~l 209 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV----------LT----KEDY 209 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC----------CC----HHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC----------CC----HHHH
Confidence 886 356689999999999999999999999999999999999999999999863221 22 3455
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
..|++.|+||+|+||.++|+.|...+
T Consensus 210 ~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 210 RTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998664443
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=211.52 Aligned_cols=168 Identities=21% Similarity=0.325 Sum_probs=138.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++.+|+.++++++.+++ |++++.++.+|..++... |+||||||+|.+.+.+.... .....+++++||.
T Consensus 99 ~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLV 176 (355)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998866 899999999999999887 99999999999998876543 4556778889999
Q ss_pred Hhc---cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 80 RTG---EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 80 ~l~---~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
.|+ ....+++||+|||+++.||+++++||+..+++++|+.++|.+||+.++.+.+.. ++ +.++
T Consensus 177 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----------~~----~~~l 242 (355)
T 2qp9_X 177 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV----------LT----KEDY 242 (355)
T ss_dssp HHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC----------CC----HHHH
T ss_pred HhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----------CC----HHHH
Confidence 886 335679999999999999999999999999999999999999999999864221 22 3455
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYA 184 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~ 184 (242)
..|++.|+||+|+||.++|+.|...++.
T Consensus 243 ~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976655543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=202.13 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=147.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|+++||++++.+++.+++.++.+++ |++++.++.+|+.++... |||+|+||+|.++..+.... .+...+.+++++.
T Consensus 59 tLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~ 136 (274)
T 2x8a_A 59 LLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLT 136 (274)
T ss_dssp HHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 899999999999998777 99999999999987664432 2223467788999
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccc-cCCCChhH
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLK-VAPFDYTS 154 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~-~~~~d~~~ 154 (242)
+|+ .....++++++||+|+.||++++ ||||+.|++++|+.++|.+||+.+++... ..+ ..++|+
T Consensus 137 ~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~---------~~~~~~~~~~-- 205 (274)
T 2x8a_A 137 EMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT---------KPPLDADVNL-- 205 (274)
T ss_dssp HHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB---------TTBBCTTCCH--
T ss_pred hhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc---------CCCCccccCH--
Confidence 986 34556899999999999999999 59999999999999999999999986411 122 235666
Q ss_pred hHHHHHHhC--CCCCHHHHHHHHHHHHHHHhhh-----------cCCCccHHHHHHHHHHH
Q psy4165 155 LCSKIAHVT--EGLSGREIAKLGVAWQASAYAS-----------EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 155 ~l~~la~~t--~g~s~adi~~lv~~a~~~~~~~-----------~~~~~~~~~~~~a~~~~ 202 (242)
..+|..| +||||+||.++|++|...+... ....++.+||++|+..+
T Consensus 206 --~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 206 --EAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp --HHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred --HHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 8999875 4999999999999665444322 12268999999998765
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=194.56 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=157.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+++|++++.|++.++++++.+.+ |++++.++.+|+.+.... |+++||||+|.+...+.... ......+.++.+
T Consensus 60 ~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1lv7_A 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 138 (257)
T ss_dssp HHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHH
Confidence 48999999999999999999998765 888899999999999777 99999999999998765421 233455778899
Q ss_pred HHHhcc--CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTGE--QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~~--~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..++. ...+++||+|||+++.+|+++++ ||++.+++++|+.++|.+||+.++.+.++. .+.++
T Consensus 139 l~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-----------~~~~~- 206 (257)
T 1lv7_A 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----------PDIDA- 206 (257)
T ss_dssp HHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-----------ccccH-
Confidence 998863 35579999999999999999994 999999999999999999999999764332 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..++..++||+++||.++|+.|...+.......++.+++.+++..+..
T Consensus 207 ---~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 207 ---AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 789999999999999999996666555555678999999999987753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=193.78 Aligned_cols=191 Identities=23% Similarity=0.346 Sum_probs=163.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
+||+++|++++.+++.++++++.+.+ |+.+..++.+|..++... |+||||||+|.+++++.+... .......+..+
T Consensus 66 ~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 144 (285)
T 3h4m_A 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL 144 (285)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHH
Confidence 48999999999999999999998765 899999999999999887 999999999999988765432 33456777888
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..++ ....+++||+|||.++.+|+++++ ||+..+++++|+.++|.+||+.++...... .+.++
T Consensus 145 l~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------~~~~~- 212 (285)
T 3h4m_A 145 LAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----------EDVNL- 212 (285)
T ss_dssp HHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-----------CcCCH-
Confidence 88885 445679999999999999999996 999999999999999999999998764322 23444
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..+.||+++||+.+|+.|...+.......++.+++.+++..+.....
T Consensus 213 ---~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 213 ---EEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKK 263 (285)
T ss_dssp ---HHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccc
Confidence 899999999999999999997777777777778999999999999876543
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=211.93 Aligned_cols=166 Identities=22% Similarity=0.349 Sum_probs=137.1
Q ss_pred ChHHHHHHhc-CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHS-GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~-~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
+||+++|+++ +.+|+.++++++.+++ |+++..++.+|..++... |+||||||+|.+++.+.... .+...+++++||
T Consensus 182 ~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL 259 (444)
T 2zan_A 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFL 259 (444)
T ss_dssp HHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHH
Confidence 4899999999 8999999999998876 888999999999999887 99999999999998876654 455678889999
Q ss_pred HHhcc---CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
..|+. ...+++||+|||+++.||+++++||+..+++++|+.++|..||+.++.+.+. .++ +.+
T Consensus 260 ~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----------~l~----~~~ 325 (444)
T 2zan_A 260 VQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----------SLT----EAD 325 (444)
T ss_dssp TTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----------ECC----HHH
T ss_pred HHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----------CCC----HHH
Confidence 99874 4568999999999999999999999999999999999999999999976422 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+..|+..|+||||+||.++|+.|...+
T Consensus 326 l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 326 FQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999665433
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=203.44 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=140.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+++|++++.+++.++++++.+++ |++++.++.+|..|+... |+||||||+|.+.+.++... ..+...+++++|
T Consensus 64 ~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~l 142 (301)
T 3cf0_A 64 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 142 (301)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHH
Confidence 48999999999999999999998765 888999999999999887 99999999999998765432 122345677888
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ ....+++||+|||+++.||+++++ ||+..+++++|+.++|.+||+.++++.+.. .++++
T Consensus 143 L~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-----------~~~~~- 210 (301)
T 3cf0_A 143 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----------KDVDL- 210 (301)
T ss_dssp HHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------SSCCH-
T ss_pred HHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-----------ccchH-
Confidence 88886 345579999999999999999984 999999999999999999999999864321 34555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAY 183 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~ 183 (242)
..++..|.||+|+||+++|+.|...+.
T Consensus 211 ---~~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 211 ---EFLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp ---HHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999996654443
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=207.84 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=159.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|++||++++.+|+.++++++.+.+ |+.+..++.+|..|.... |+||||||||.+.++++... .+...++++.||.
T Consensus 253 ~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~ 330 (489)
T 3hu3_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 330 (489)
T ss_dssp HHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 999999999999999887 99999999999999876544 4456678888988
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+ ....+++||+|||+++.||++++ +||+..|+|++|+.++|.+||+.++..+++. .+.++
T Consensus 331 ~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-----------~~~~l--- 396 (489)
T 3hu3_A 331 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----------DDVDL--- 396 (489)
T ss_dssp HHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-----------TTCCH---
T ss_pred HhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-----------chhhH---
Confidence 886 45567999999999999999999 4999999999999999999999998764332 23455
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC-----------------CccHHHHHHHHHHHHHhhh
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDG-----------------VLTEAMVMSKVEDSIRAHK 207 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~ 207 (242)
..++..+.||+++||.++|+.|...+...... .++.+++..|+..+.....
T Consensus 397 -~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 397 -EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp -HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred -HHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 89999999999999999999665555433211 4899999999988765543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=192.25 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=146.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc---chHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI---SESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~---~~~~~~~l~~ 76 (242)
++|+++|++++.+++.++++++.+.+ |.++..++.+|..+.... |+||||||+|.++.++..... .......++.
T Consensus 54 ~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ 132 (262)
T 2qz4_A 54 LLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ 132 (262)
T ss_dssp HHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHH
T ss_pred HHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHH
Confidence 47999999999999999999998866 888999999999999887 999999999999887654321 2234466788
Q ss_pred HHHHhcc--CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 77 FLYRTGE--QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 77 lL~~l~~--~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
||..++. ...++++|+|||.++.+|+++++ ||+..++|++|+.++|.+||+.++.+.+... +.
T Consensus 133 ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-------------~~ 199 (262)
T 2qz4_A 133 LLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-------------SS 199 (262)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-------------TH
T ss_pred HHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-------------ch
Confidence 8888863 45579999999999999999996 9999999999999999999999998754321 11
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhhhhhh
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKV 210 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (242)
+..+..++..+.||+|+||.++|+.|...+.......++.+++..++.++..+..++.
T Consensus 200 ~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 200 TFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKS 257 (262)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhh
Confidence 3345789999999999999999996555555455568999999999999887655443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=212.21 Aligned_cols=189 Identities=23% Similarity=0.307 Sum_probs=157.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+||++||++++.+++.++++++.+.+ |.....++.+|+.++... |||+||||||.+...++.. .......+.++++
T Consensus 79 tLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 48999999999999999999998865 888899999999998776 9999999999998877542 1234566788999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|..|+ .....+++|++||+|+.||++++ +|||+.|+|++|+.++|.+||+.+++++++ .+++++
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-----------~~dv~l- 225 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 225 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-----------CCSSTT-
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-----------ChHHHH-
Confidence 99997 33456899999999999999999 599999999999999999999998865322 134555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+|..|+||+|+||+++|++|...+.......++.+++..++.++..+
T Consensus 226 ---~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 226 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp ---HHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred ---HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 8899999999999999999944433333344589999999999988755
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=193.18 Aligned_cols=188 Identities=22% Similarity=0.304 Sum_probs=154.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||+++|++++++|+.++++++.+++ |+++..++.+|..+.... |+||||||+|.+++.+.... .....+++++||.
T Consensus 132 ~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~ 209 (357)
T 3d8b_A 132 LIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLV 209 (357)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHH
Confidence 48999999999999999999999876 899999999999999877 99999999999998775543 4456778888998
Q ss_pred Hhcc----CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTGE----QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~~----~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++. ...+++||+|||+++.||+++++||+..+++++|+.++|.+|++.++.+.+. .++ +..
T Consensus 210 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----------~l~----~~~ 275 (357)
T 3d8b_A 210 QLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----------CLS----EEE 275 (357)
T ss_dssp HHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----------CCC----HHH
T ss_pred HHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----------Ccc----HHH
Confidence 8862 3467999999999999999999999999999999999999999999876321 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------cCCCccHHHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------EDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------~~~~~~~~~~~~a~~~~~~ 204 (242)
++.+++.++||+|+||..+|+.|...+... ....++.+++..++..+..
T Consensus 276 l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 589999999999999999999664444331 2247999999999987753
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=179.53 Aligned_cols=183 Identities=23% Similarity=0.314 Sum_probs=146.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+|+++||++++.+++.+++.++.+.+ +...+.+..+|+.+.... |+++|+||+|.++..+... .......+.++++
T Consensus 64 tl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 64 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHH
Confidence 48999999999999999998887654 788889999999998766 9999999999998766532 1234456778899
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..|+ .....++++++||+|+.||+++++ ||+..+++++|+.++|.+||+.+++..++ .++.++
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----------~~~~~~- 210 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 210 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-----------CTTCCH-
T ss_pred HHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-----------CcccCH-
Confidence 98886 334458899999999999999994 99999999999999999999998865322 134555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..+|..++||+|+||+++|+.|...+.......++.+++++++
T Consensus 211 ---~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 211 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 8899999999999999999965554444445689999998875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=182.83 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=148.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|+++|++++++|+.++++++.+.+ |+++..++.+|..+.... |+||||||+|.++..+.... .....+..+.||.
T Consensus 69 ~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 69 LLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLV 146 (297)
T ss_dssp HHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC------CCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 889999999999999877 99999999999998775533 2223556777887
Q ss_pred HhccC-----CCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 80 RTGEQ-----SDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 80 ~l~~~-----~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
.++.. ..+++||++||+++.+|+++++||+..+++++|+.++|..||+.++.+.+. .++ +.
T Consensus 147 ~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~----------~~~----~~ 212 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS----------PLD----TE 212 (297)
T ss_dssp HHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC----------CSC----HH
T ss_pred HHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC----------CCC----HH
Confidence 77532 256999999999999999999999999999999999999999999976321 122 34
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc------------CCCccHHHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGREIAKLGVAWQASAYASE------------DGVLTEAMVMSKVEDS 202 (242)
Q Consensus 155 ~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~------------~~~~~~~~~~~a~~~~ 202 (242)
.+..+++.+.||+++||.++|+.+...+.... ...++.+++..|+...
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 55899999999999999999986544433321 2468999998887654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=189.49 Aligned_cols=186 Identities=21% Similarity=0.279 Sum_probs=142.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
+||++||++++.+|+.++++++.+.+ |+.+..++.+|..++... |+||||||||.++..+.... .....++++.||.
T Consensus 163 ~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 163 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGE-HDASRRLKTEFLI 240 (389)
T ss_dssp HHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSS-SEEEEEETGGGGC---------CTHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCcc-chHHHHHHHHHHH
Confidence 48999999999999999999998865 889999999999999887 99999999999988765433 3345677788888
Q ss_pred Hhc----cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG----EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~----~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++ ....+++||+|||+++.||+++++||+..++|++|+.++|.+||+.++.+.+. .+. +..
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----------~l~----~~~ 306 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----------PLT----QKE 306 (389)
T ss_dssp HHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----------CSC----HHH
T ss_pred HhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----------CCC----HHH
Confidence 875 23567999999999999999999999999999999999999999999876321 122 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh------------cCCCccHHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS------------EDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~------------~~~~~~~~~~~~a~~~~ 202 (242)
+..++..+.||+++||..||+.+...+... ....++.+++..++...
T Consensus 307 ~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 589999999999999999998554443332 22378999999888754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=175.17 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=146.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC--ccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE--TISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~--~~~~~~~~~l~~l 77 (242)
+|+++||+.++.+++.+++.++...+ +...+.+..+|+.+.... |+++|+||+|.+...+... .........++++
T Consensus 88 tl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 166 (278)
T 1iy2_A 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 166 (278)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHH
Confidence 47999999999999999998887654 778888999999998776 9999999999998765431 1233456778889
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
+..++ .....++++++||+|+.||++++ +||+..++|++|+.++|.+||+.++...++ .+++++
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----------~~~~~~- 234 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 234 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-----------CTTCCH-
T ss_pred HHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-----------CcccCH-
Confidence 98886 33445889999999999999999 499999999999999999999998865322 123455
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
..++..++||+++||+++|+.|...+.......++.+++++++
T Consensus 235 ---~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 235 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 8899999999999999999955544444445689999998875
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-26 Score=192.13 Aligned_cols=189 Identities=22% Similarity=0.326 Sum_probs=145.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc---cchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET---ISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~---~~~~~~~~l~~ 76 (242)
+||+++|++++.+++.++++++.+.+ |.++..++.+|..+.... |+||||||+|.+...+...+ ......+.++.
T Consensus 59 ~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ 137 (268)
T 2r62_A 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137 (268)
T ss_dssp HHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTT
T ss_pred HHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHH
Confidence 48999999999999999999998765 777778889999999877 99999999999988764321 01112234567
Q ss_pred HHHHhcc---CCCCeEEEEecCCcccccHHHhc--ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 77 FLYRTGE---QSDKFMLVLASNTPQQFDWAVND--RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 77 lL~~l~~---~~~~v~vI~tTn~~~~ld~al~~--Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
||..++. ...+++||+|||.++.+|+++++ ||+..++|++|+.++|.+||+.++..+++. .+.+
T Consensus 138 ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----------~~~~ 206 (268)
T 2r62_A 138 LLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----------NDVN 206 (268)
T ss_dssp TTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----------SSCC
T ss_pred HHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----------CccC
Confidence 7777753 33458999999999999999995 999999999999999999999998764322 3345
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
+ +.++..+.||+|+||+++|+.|...+.......++.+++..++......
T Consensus 207 ~----~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 207 L----QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp T----TTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCC
T ss_pred H----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhc
Confidence 5 6789999999999999999854444433345589999998887655433
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=171.61 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=113.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCcc-chHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETI-SESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~-~~~~~~~l 74 (242)
+||++||+++|.+|+.++++++.+.+ |+++..++++|..| +... ||||||||||.+++.+.+... ....+.+.
T Consensus 51 ~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~-~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~ 129 (293)
T 3t15_A 51 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGN-MCCLFINDLDAGAGRMGGTTQYTVNNQMVN 129 (293)
T ss_dssp HHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSS-CCCEEEECCC--------------CHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCCCCccccchHHHHH
Confidence 48999999999999999999998866 99999999999999 4455 999999999999986543221 12234555
Q ss_pred HHHHHHhc-------------cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhh
Q psy4165 75 NAFLYRTG-------------EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAA 139 (242)
Q Consensus 75 ~~lL~~l~-------------~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~ 139 (242)
+.|+..|+ ....+++||+|||+++.||++++ +||+..|+ .|+.++|.+|++.++..
T Consensus 130 ~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~------- 200 (293)
T 3t15_A 130 ATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT------- 200 (293)
T ss_dssp HHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG-------
T ss_pred HHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC-------
Confidence 67777664 13457999999999999999999 69998887 47999999999988864
Q ss_pred hcccccccCCCChhHhHHHHHHhCCCCCHHHHHHH
Q psy4165 140 QGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKL 174 (242)
Q Consensus 140 ~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~l 174 (242)
.+++. +.+++.++||+++||..+
T Consensus 201 --------~~~~~----~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 201 --------DNVPA----EDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp --------GCCCH----HHHHHHHHHSCSCCHHHH
T ss_pred --------CCCCH----HHHHHHhCCCCcccHHHH
Confidence 23444 889999999999999754
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-20 Score=165.02 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=100.2
Q ss_pred ChHHHHHHhcC--CcEEEEecCCccccc-chHHHHHHHHHHHH---HhCCCcEEEEEecccccccccCCCccchH---HH
Q psy4165 1 MFAKKLAHHSG--MDYAIMTGGDVAPMG-SSGVTAIHKVFDWA---SSSRKGLVLFIDEADAFLRKRSSETISES---LR 71 (242)
Q Consensus 1 llA~aiA~e~~--~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A---~~~~~p~Il~iDeiD~l~~~r~~~~~~~~---~~ 71 (242)
++|+++|++++ ++|+.++++++.+++ |+++. ++++|..| +... ||||||||+|.++++|.....++. ..
T Consensus 78 ~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~-~~il~iDEid~l~~~r~~~~~~~~~~~~~ 155 (456)
T 2c9o_A 78 ALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKE-TKEVYEGEVTELTPCETENPMGGYGKTIS 155 (456)
T ss_dssp HHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEE-EEEEEEEEEEEEEEC--------------
T ss_pred HHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcC-CcEEEEechhhcccccCCCCCCCcchHHH
Confidence 48999999999 999999999999876 99988 99999999 6566 999999999999998866431111 11
Q ss_pred ---------------HHHHHHHHHhc----cCCCCeEEEEecCCcccccHHHh--ccccc--EEEeCCCC--HHHHHHHH
Q psy4165 72 ---------------ATLNAFLYRTG----EQSDKFMLVLASNTPQQFDWAVN--DRLDE--MVEFPLPT--LNERERLV 126 (242)
Q Consensus 72 ---------------~~l~~lL~~l~----~~~~~v~vI~tTn~~~~ld~al~--~Rfd~--~i~~~~P~--~~~R~~Il 126 (242)
++.+.++..++ ..++.++|++|||+++.+|+++. +|||+ .+.+|.|+ .++|.+|+
T Consensus 156 ~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il 235 (456)
T 2c9o_A 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEII 235 (456)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEE
T ss_pred HHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHH
Confidence 12234666664 23334666699999999999998 89998 67777774 47888887
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+.+.. .+++.++..|+| |+||.++|.
T Consensus 236 ~~~~~----------------------~dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 236 QDVTL----------------------HDLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp EEEEH----------------------HHHHHTC----------------
T ss_pred HHHHH----------------------HHHHHHHHhCCC--hhHHHHHHh
Confidence 76542 134889999999 999999995
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=133.30 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=120.1
Q ss_pred ChHHHHHHhcC-------CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSG-------MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~-------~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.++ .+++.++++++.+.+ |.....+..+|..+. ++||||||+|.+++.++... ....
T Consensus 82 ~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~---~~~~ 154 (309)
T 3syl_A 82 TVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERD---YGQE 154 (309)
T ss_dssp HHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---C---CTHH
T ss_pred HHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCccc---ccHH
Confidence 37899999873 499999999998765 888888999998884 79999999999987654322 1345
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
.++.|+..|+....++++|++||... .++|+|++||+..++|++|+.+++.+|++.++.+.+.. +
T Consensus 155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~----------~ 224 (309)
T 3syl_A 155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQ----------M 224 (309)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCE----------E
T ss_pred HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCC----------C
Confidence 67788888877777889999998754 36799999999999999999999999999999864321 1
Q ss_pred CCCChhHhHHHHHHh-------CCCCCHHHHHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHV-------TEGLSGREIAKLGVAWQ 179 (242)
Q Consensus 148 ~~~d~~~~l~~la~~-------t~g~s~adi~~lv~~a~ 179 (242)
+ ...+..++.. ...-+++++.+++..+.
T Consensus 225 ~----~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 225 T----PEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp C----HHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 1 2233555554 22234889999987554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-14 Score=123.55 Aligned_cols=175 Identities=11% Similarity=0.097 Sum_probs=127.2
Q ss_pred ChHHHHHHhcCC--cEEEEecCCccccc--------------------------------------------------ch
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGDVAPMG--------------------------------------------------SS 28 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~l~~~~--------------------------------------------------g~ 28 (242)
++|+++|++++. +++.+++..+.+.+ |+
T Consensus 85 ~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~ 164 (368)
T 3uk6_A 85 AIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE 164 (368)
T ss_dssp HHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC------
T ss_pred HHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc
Confidence 479999999885 88888876644321 22
Q ss_pred HHHHHHHHHHHHHhC----C----CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEec------
Q psy4165 29 GVTAIHKVFDWASSS----R----KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLAS------ 94 (242)
Q Consensus 29 ~e~~l~~~f~~A~~~----~----~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tT------ 94 (242)
....++..|..+... . .|+||||||+|.+. ...++.|+..++....+++++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~------------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i 232 (368)
T 3uk6_A 165 IKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD------------IESFSFLNRALESDMAPVLIMATNRGITRI 232 (368)
T ss_dssp -CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB------------HHHHHHHHHHTTCTTCCEEEEEESCSEEEC
T ss_pred cHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC------------hHHHHHHHHHhhCcCCCeeeeecccceeee
Confidence 234555556554421 1 17899999999984 234566777776666666666554
Q ss_pred -----CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHH
Q psy4165 95 -----NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169 (242)
Q Consensus 95 -----n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~a 169 (242)
|.+..+++++++||.. ++|++|+.+++.+|++..+...+ .. ++ +..++.+++.+.|.+++
T Consensus 233 ~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~----------~~---~~-~~~l~~l~~~~~~G~~r 297 (368)
T 3uk6_A 233 RGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEED----------VE---MS-EDAYTVLTRIGLETSLR 297 (368)
T ss_dssp BTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTT----------CC---BC-HHHHHHHHHHHHHSCHH
T ss_pred eccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcC----------CC---CC-HHHHHHHHHHhcCCCHH
Confidence 4588999999999985 89999999999999999987521 11 22 34558899998878999
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 170 EIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 170 di~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
++.+++..+...+.......++.+++.+++...
T Consensus 298 ~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 298 YAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 999999966655555666799999999998764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=122.77 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=108.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc-ccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA-PMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~-~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
++|+++|++++++|+.+++++.. ... +.....++.+|..+.... |+||||||+|.+++.+..+.. ....++..|+
T Consensus 79 ~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~--~~~~~l~~L~ 155 (272)
T 1d2n_A 79 ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ-LSCVVVDDIERLLDYVPIGPR--FSNLVLQALL 155 (272)
T ss_dssp HHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS-EEEEEECCHHHHTTCBTTTTB--CCHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcC-CcEEEEEChhhhhccCCCChh--HHHHHHHHHH
Confidence 47999999999999999887533 222 344567899999998766 899999999999876543221 1233444455
Q ss_pred HHhcc---CCCCeEEEEecCCcccccH-HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 79 YRTGE---QSDKFMLVLASNTPQQFDW-AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 79 ~~l~~---~~~~v~vI~tTn~~~~ld~-al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
..++. ...++++|+|||.++.+|+ .+.+||+..|++|+++. |.+|.+.+.... .++ +.
T Consensus 156 ~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~~---------------~~~-~~ 217 (272)
T 1d2n_A 156 VLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELLG---------------NFK-DK 217 (272)
T ss_dssp HHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHHT---------------CSC-HH
T ss_pred HHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH--HHHHHHHHHhcC---------------CCC-HH
Confidence 44542 4557889999999999999 56799999998876654 344444433221 111 44
Q ss_pred hHHHHHHhCCCC----CHHHHHHHHH
Q psy4165 155 LCSKIAHVTEGL----SGREIAKLGV 176 (242)
Q Consensus 155 ~l~~la~~t~g~----s~adi~~lv~ 176 (242)
.+..+++.+.|| +.+++.+++.
T Consensus 218 ~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 218 ERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp HHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHH
Confidence 568899999998 5666666664
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=117.78 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=121.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|+++|++++.+|+.++++.+. ....+...+.. ...+++|||||||.+.. .....|+..
T Consensus 70 ~la~~ia~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~vl~lDEi~~l~~------------~~~~~Ll~~ 129 (338)
T 3pfi_A 70 TLANIISYEMSANIKTTAAPMIE-----KSGDLAAILTN---LSEGDILFIDEIHRLSP------------AIEEVLYPA 129 (338)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCC-----SHHHHHHHHHT---CCTTCEEEEETGGGCCH------------HHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecchhcc-----chhHHHHHHHh---ccCCCEEEEechhhcCH------------HHHHHHHHH
Confidence 47999999999999999997763 22334444432 23489999999999842 223344444
Q ss_pred hccCC------------------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcc
Q psy4165 81 TGEQS------------------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGK 142 (242)
Q Consensus 81 l~~~~------------------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~ 142 (242)
++... .++++|++||+...++++|++||+..++|++|+.+++..+++.++...+..
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~------ 203 (338)
T 3pfi_A 130 MEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT------ 203 (338)
T ss_dssp HHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE------
T ss_pred HHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC------
Confidence 43211 148999999999999999999999999999999999999999998763221
Q ss_pred cccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 143 RRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 143 ~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
++ ...++.++..+.| +++++.+++..+...+.....+.++.+++..++..
T Consensus 204 -------~~-~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 204 -------CE-EKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp -------EC-HHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred -------CC-HHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 11 3345778886664 67888898875544444445567899998888765
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-14 Score=118.41 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=128.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHH-----HhCCCcEEEEEecccccccccCCCccchHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWA-----SSSRKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A-----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
++|+++|+.++.+++.++++.+.. +.| +....++.+|..+ .... ++||||||+|.+.+.............
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEi~~l~~~~~~~~~~~~~~~ 143 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ-NGIVFIDEIDKICKKGEYSGADVSREG 143 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHH-HCEEEEECGGGGSCCSSCCSSHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccC-CCEEEEEChhhcCccccccccchhHHH
Confidence 379999999999999999998875 334 3345677777633 1122 799999999999877654332222334
Q ss_pred HHHHHHHHhccC----------CCCeEEEEe----cCCcccccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccc
Q psy4165 73 TLNAFLYRTGEQ----------SDKFMLVLA----SNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFV 134 (242)
Q Consensus 73 ~l~~lL~~l~~~----------~~~v~vI~t----Tn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~ 134 (242)
+.+.|+..++.. ..++++|++ ++.+..+++++++||+..|+|++|+.+++.+|++. ++..+.
T Consensus 144 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 223 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 223 (310)
T ss_dssp HHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHH
Confidence 456777766532 346888888 67899999999999998999999999999999994 222110
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHhC-------CCCCHHHHHHHHHHHHHHHh---hhcCC---CccHHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHVT-------EGLSGREIAKLGVAWQASAY---ASEDG---VLTEAMVMSKVED 201 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~t-------~g~s~adi~~lv~~a~~~~~---~~~~~---~~~~~~~~~a~~~ 201 (242)
..... .+.. -.++ +..++.+++.+ ++.+++++.+++..+...+. +...+ .++.+++.+++..
T Consensus 224 ~~~~~---~~~~-~~~~-~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 224 ALMAT---EGVN-IAFT-TDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHH---TTCE-EEEC-HHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHh---cCCe-eccC-HHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 00000 0000 0122 33456677765 35789999999985442221 11222 4888888887754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-15 Score=136.34 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=112.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---------c-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---------M-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---------~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||++||+.++.+++.++++.+.. . .|.....+...|..+...+ | ||||||+|.+.+.+...
T Consensus 123 tlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~-~-vl~lDEid~l~~~~~~~------ 194 (543)
T 3m6a_A 123 SLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLN-P-VFLLDEIDKMSSDFRGD------ 194 (543)
T ss_dssp HHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSS-E-EEEEEESSSCC------------
T ss_pred HHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccC-C-EEEEhhhhhhhhhhccC------
Confidence 489999999999999999876532 2 2666677788888887665 5 99999999998654321
Q ss_pred HHHHHHHHHHhccCC---------------CCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcccc
Q psy4165 71 RATLNAFLYRTGEQS---------------DKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVL 135 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~---------------~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~ 135 (242)
..+.||..|+... .++++|+|||+++.||++|++||+ .|+|+.|+.++|.+|++.++.+...
T Consensus 195 --~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~ 271 (543)
T 3m6a_A 195 --PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQI 271 (543)
T ss_dssp -----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHH
T ss_pred --HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 2345555554211 568999999999999999999996 7999999999999999998833111
Q ss_pred chhhhcccccccCCCCh-hHhHHHHHHhCCC-CCHHHHHHHHHHH----HHHHhhhcC--CCccHHHHHHHHHH
Q psy4165 136 QPAAQGKRRLKVAPFDY-TSLCSKIAHVTEG-LSGREIAKLGVAW----QASAYASED--GVLTEAMVMSKVED 201 (242)
Q Consensus 136 ~~~~~~~~~~~~~~~d~-~~~l~~la~~t~g-~s~adi~~lv~~a----~~~~~~~~~--~~~~~~~~~~a~~~ 201 (242)
. ..++....+.+ +..+..++....+ ...++|++.+..+ ......... ..++.+++.+++..
T Consensus 272 ~-----~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 272 K-----EHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp H-----HTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred H-----HcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 0 01111112211 3344566654333 4445555544322 222222211 26788888777643
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-14 Score=95.24 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHH
Q psy4165 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAM 194 (242)
Q Consensus 115 ~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~ 194 (242)
|+|+.++|.+||+.|++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-----------~~~dl----~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d 65 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-----------RGINL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 65 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-----------TTCCH----HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-----------CccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 7899999999999999875432 35666 99999999999999999999776666666667899999
Q ss_pred HHHHHHHHHH
Q psy4165 195 VMSKVEDSIR 204 (242)
Q Consensus 195 ~~~a~~~~~~ 204 (242)
|..|+.++..
T Consensus 66 ~~~Al~~v~~ 75 (78)
T 3kw6_A 66 FEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=116.89 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=119.0
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+.. .....+..++..
T Consensus 53 ~la~~i~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~~--~~~~~~l~lDEi~~l~~---------~~~~~L~~~l~~ 116 (324)
T 1hqc_A 53 TLAHVIAHELGVNLRVTSGPAIEK-----PGDLAAILANS--LEEGDILFIDEIHRLSR---------QAEEHLYPAMED 116 (324)
T ss_dssp HHHHHHHHHHTCCEEEECTTTCCS-----HHHHHHHHTTT--CCTTCEEEETTTTSCCH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeccccCC-----hHHHHHHHHHh--ccCCCEEEEECCccccc---------chHHHHHHHHHh
Confidence 479999999999999999887632 23344444331 23489999999999842 222333333333
Q ss_pred hc------c---------CCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 TG------E---------QSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l~------~---------~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
.. . ...++.+|++||++..+++++.+||+..+++++|+.+++..+++.++.+.+..
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--------- 187 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--------- 187 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---------
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---------
Confidence 21 0 11357899999999999999999999899999999999999999998753221
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
++ ...++.++..+.| +++++.+++..+...+.......++.+++..++..
T Consensus 188 ----~~-~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 188 ----IT-EEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp ----CC-HHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred ----CC-HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 22 3445889999865 57899998874332232234557888888777654
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=93.32 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccH
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTE 192 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~ 192 (242)
+-.+||.++|++||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-----------~dvdl----~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~ 71 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-----------RGINL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 71 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-----------TTCCC----HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-----------cccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 346899999999999999875432 35777 899999999999999999996666566555678999
Q ss_pred HHHHHHHHHHH
Q psy4165 193 AMVMSKVEDSI 203 (242)
Q Consensus 193 ~~~~~a~~~~~ 203 (242)
++|..|+.++.
T Consensus 72 ~df~~Al~~v~ 82 (86)
T 2krk_A 72 EDFEMAVAKVM 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-12 Score=109.51 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=124.8
Q ss_pred hHHHHHHhc---------CCcEEEEecCCcccc-----------------cch-HHHHHHHHHHHHHhCCCcEEEEEecc
Q psy4165 2 FAKKLAHHS---------GMDYAIMTGGDVAPM-----------------GSS-GVTAIHKVFDWASSSRKGLVLFIDEA 54 (242)
Q Consensus 2 lA~aiA~e~---------~~~~~~v~~~~l~~~-----------------~g~-~e~~l~~~f~~A~~~~~p~Il~iDei 54 (242)
+|+++++++ +.+++.+++....+. .|. ....+..++.......+|+||||||+
T Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi 139 (387)
T 2v1u_A 60 VARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139 (387)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence 688888887 889999998764321 121 22335566666554545899999999
Q ss_pred cccccccCCCccchHHHHHHHHHHHHhccC--CCCeEEEEecCCc---ccccHHHhccccc-EEEeCCCCHHHHHHHHHH
Q psy4165 55 DAFLRKRSSETISESLRATLNAFLYRTGEQ--SDKFMLVLASNTP---QQFDWAVNDRLDE-MVEFPLPTLNERERLVRL 128 (242)
Q Consensus 55 D~l~~~r~~~~~~~~~~~~l~~lL~~l~~~--~~~v~vI~tTn~~---~~ld~al~~Rfd~-~i~~~~P~~~~R~~Il~~ 128 (242)
|.+...+ .....+..++..+... ..++.+|++||.+ +.+++++.+||.. .++|++|+.+++.+|++.
T Consensus 140 ~~l~~~~-------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~ 212 (387)
T 2v1u_A 140 DFLPKRP-------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILET 212 (387)
T ss_dssp THHHHST-------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHH
T ss_pred hhhcccC-------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHH
Confidence 9996432 1235666677666533 5678999999988 7899999999975 899999999999999999
Q ss_pred HHhccccchhhhcccccccCCCChhHhHHHHHHhCC---CCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 129 YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE---GLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~---g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
.+.... .....++ ..++.+++.+. | .++.+.+++..+...+.......++.+++..++.....
T Consensus 213 ~~~~~~--------~~~~~~~----~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 213 RAEEAF--------NPGVLDP----DVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHB--------CTTTBCS----SHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHhhc--------cCCCCCH----HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 986410 0111222 22366777665 4 56777788875443333335568999999999877643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-11 Score=97.66 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=109.4
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHHh-----CCCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS-----SRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~-----~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++++++ +.+++.++++.... ...+...+..... ..+|.||+|||+|.+.. .
T Consensus 54 l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~-- 117 (226)
T 2chg_A 54 TAIALARDLFGENWRDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------D-- 117 (226)
T ss_dssp HHHHHHHHHHGGGGGGGEEEEETTCTTC-----HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------H--
T ss_pred HHHHHHHHHhccccccceEEeccccccC-----hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------H--
Confidence 678888775 46788888766432 1222332222221 13489999999999843 1
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
....|+..++....++.+|++||.+..+++++.+||. .+++++|+.+++.++++.++.+.+. . ++
T Consensus 118 -~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~----------~---~~ 182 (226)
T 2chg_A 118 -AQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV----------K---IT 182 (226)
T ss_dssp -HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC----------C---BC
T ss_pred -HHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC----------C---CC
Confidence 2334555555556678899999999999999999998 9999999999999999998865321 1 11
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
...+..+++.+.| +++.+.+++. .+...+ +.++.+++.+++.
T Consensus 183 -~~~~~~l~~~~~g-~~r~l~~~l~--~~~~~~---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 183 -EDGLEALIYISGG-DFRKAINALQ--GAAAIG---EVVDADTIYQITA 224 (226)
T ss_dssp -HHHHHHHHHHHTT-CHHHHHHHHH--HHHHTC---SCBCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCC-CHHHHHHHHH--HHHhcC---ceecHHHHHHHhc
Confidence 3345778877754 6666666665 222222 6899999988774
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=119.27 Aligned_cols=176 Identities=13% Similarity=0.151 Sum_probs=113.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-c-chH-HHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-G-SSG-VTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-~-g~~-e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|++||+.++.||+.++++.+... + |.. +..+..+|..+ .... |+||||||+|.+.+.+.+.+.+.. ..
T Consensus 66 ~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 66 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ-RGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHH-HCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcC-CcEEEEeChhhhcccccccccccccchH
Confidence 4899999999999999999988753 3 655 66788888776 3333 899999999999987765432221 23
Q ss_pred HHHHHHHHHhccC-------------CCCeEEEEecCC--------c---------------------------------
Q psy4165 72 ATLNAFLYRTGEQ-------------SDKFMLVLASNT--------P--------------------------------- 97 (242)
Q Consensus 72 ~~l~~lL~~l~~~-------------~~~v~vI~tTn~--------~--------------------------------- 97 (242)
.+++.||..|+.. ...+++|+|||. .
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~ 224 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHH
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHH
Confidence 4677787777621 001334444444 1
Q ss_pred -------cc-----ccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCChhHhHHHHHH
Q psy4165 98 -------QQ-----FDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH 161 (242)
Q Consensus 98 -------~~-----ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~ 161 (242)
+. +.|+|++||+..+.|++|+.+++.+|+.. ++.++...... .+..+ .++ +..++.|++
T Consensus 225 l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~---~~~~l-~~~-~~a~~~L~~ 299 (363)
T 3hws_A 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNL---EGVDL-EFR-DEALDAIAK 299 (363)
T ss_dssp HHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHT---TTCEE-EEC-HHHHHHHHH
T ss_pred HHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCceE-EEC-HHHHHHHHH
Confidence 11 78999999999999999999999999997 43322110000 01100 112 334466665
Q ss_pred h--CCCCCHHHHHHHHHHHHHHH
Q psy4165 162 V--TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 162 ~--t~g~s~adi~~lv~~a~~~~ 182 (242)
. ...+.+++|++++..+....
T Consensus 300 ~~~~~~~gaR~L~~~ie~~~~~~ 322 (363)
T 3hws_A 300 KAMARKTGARGLRSIVEAALLDT 322 (363)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHH
T ss_pred hhcCCccCchHHHHHHHHHHHHH
Confidence 3 34567788999887544333
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=112.63 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=108.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC----CCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS----RKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
.+|+++|++++.+++.+++++.. ...++..+...... .++.||||||+|.+.+ ....+.
T Consensus 63 ~la~~la~~l~~~~~~i~~~~~~------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~ 125 (324)
T 3u61_B 63 TVAKALCHDVNADMMFVNGSDCK------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRH 125 (324)
T ss_dssp HHHHHHHHHTTEEEEEEETTTCC------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcccccC------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHH
Confidence 37999999999999999987752 34455544443222 1389999999999941 123445
Q ss_pred HHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhH
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLC 156 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l 156 (242)
|+..++....++.+|++||.+..+++++++||. .++|++|+.++|.+|++.++..+..... ..++..++ ...+
T Consensus 126 L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~---~~~~~~~~---~~~~ 198 (324)
T 3u61_B 126 LRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICK---HEGIAIAD---MKVV 198 (324)
T ss_dssp HHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHH---HHTCCBSC---HHHH
T ss_pred HHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHH---HcCCCCCc---HHHH
Confidence 666666555678999999999999999999996 7999999999999888877654321111 01222222 1445
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 157 SKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 157 ~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+.+++.+.| |++.+++..+.++ ..+.++.+++...+.
T Consensus 199 ~~l~~~~~g----d~R~a~~~L~~~~---~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 199 AALVKKNFP----DFRKTIGELDSYS---SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHTCS----CTTHHHHHHHHHG---GGTCBCC--------
T ss_pred HHHHHhCCC----CHHHHHHHHHHHh---ccCCCCHHHHHHHhC
Confidence 778888553 5555555334433 344577776665443
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-12 Score=112.71 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=115.7
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|++||+.++.+|+.+++... +.+.++.+|..+... .+++||||||+|.+... ....|
T Consensus 65 tlAr~ia~~~~~~f~~l~a~~~------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~L 126 (447)
T 3pvs_A 65 TLAEVIARYANADVERISAVTS------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAF 126 (447)
T ss_dssp HHHHHHHHHTTCEEEEEETTTC------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CC
T ss_pred HHHHHHHHHhCCCeEEEEeccC------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHH
Confidence 4799999999999999987553 344567777766532 33899999999999432 23456
Q ss_pred HHHhccCCCCeEEEEec--CCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 78 LYRTGEQSDKFMLVLAS--NTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tT--n~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
|..++. +.+++|++| |....++++|++||. .+.|++|+.+++..+++.++.+...... ..++. ++ +..
T Consensus 127 L~~le~--~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~---~~~~~---i~-~~a 196 (447)
T 3pvs_A 127 LPHIED--GTITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG---GQDIV---LP-DET 196 (447)
T ss_dssp HHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSST---TSSEE---CC-HHH
T ss_pred HHHHhc--CceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc---cccCc---CC-HHH
Confidence 666653 456777766 666789999999997 8889999999999999999976321100 00111 22 345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYAS----EDGVLTEAMVMSKVED 201 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~----~~~~~~~~~~~~a~~~ 201 (242)
++.+++.+.| +.+++.+++. .+...+. ....||.+++.+++..
T Consensus 197 l~~L~~~~~G-d~R~lln~Le--~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 197 RRAIAELVNG-DARRALNTLE--MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHCS-CHHHHHHHHH--HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHCCC-CHHHHHHHHH--HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 5788888654 6677777776 3334443 2247999999887754
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=92.03 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
|.++|.+||+.+++++++. +++|+ +.||+.|+||||+||.++|++|...+.......++.+||..
T Consensus 2 d~~~R~~Il~~~~~~~~~~-----------~dvdl----~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~ 66 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-----------RGIRW----ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 66 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-----------SCCCH----HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-----------CccCH----HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 5689999999999875432 35666 99999999999999999999776666666667899999999
Q ss_pred HHHHHHHhhhhhhhcccc
Q psy4165 198 KVEDSIRAHKMKVRWQSE 215 (242)
Q Consensus 198 a~~~~~~~~~~~~~~~~~ 215 (242)
|+.++..+..++.....+
T Consensus 67 Al~~v~~~~~~~~~~~~y 84 (88)
T 3vlf_B 67 AVDKVISGYKKFSSTSRY 84 (88)
T ss_dssp HHHHHTC-----------
T ss_pred HHHHHhcCcccccchhHH
Confidence 999998765555444443
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=121.75 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=126.1
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|..+ +++++.++.+.+.. ++ |+.+..++.+|..+.... |+||||||+|.+++.+.......
T Consensus 223 la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~~~ 301 (758)
T 1r6b_X 223 IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQV 301 (758)
T ss_dssp HHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSCHH
T ss_pred HHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcchH
Confidence 688888876 77899998888763 44 899999999999998776 89999999999988665432122
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKR 143 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~ 143 (242)
... .+|..+- ..+.+.+|++||.++ .+|++|.+||+ .+.|+.|+.++|.+||+.++..+... .
T Consensus 302 ---~~~-~~L~~~l-~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~------~ 369 (758)
T 1r6b_X 302 ---DAA-NLIKPLL-SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH------H 369 (758)
T ss_dssp ---HHH-HHHSSCS-SSCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH------H
T ss_pred ---HHH-HHHHHHH-hCCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHh------c
Confidence 222 2332221 245688999998754 57899999998 79999999999999999987653211 0
Q ss_pred ccccCCCChhHhHHHHHHhCCC-----CCHHHHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHHH
Q psy4165 144 RLKVAPFDYTSLCSKIAHVTEG-----LSGREIAKLGVAWQASAYA----SEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 144 ~~~~~~~d~~~~l~~la~~t~g-----~s~adi~~lv~~a~~~~~~----~~~~~~~~~~~~~a~~~~ 202 (242)
++..+ +..+..++..+.| +.+..+..++..+.+.... .....++.+++..++...
T Consensus 370 ~v~~~----~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 370 DVRYT----AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TCCCC----HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 11111 2234555555444 5677888888855443332 123478888888887654
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=98.62 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++.++..+.. ..+|.+|+|||+|.+.. ..++.|+..++....++.+|++||.+..+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccH------------HHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 3456666665432 22379999999999831 24456666676666788999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASE 186 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~ 186 (242)
|+ ..+++++|+.++..++++.++.+.+ ... + ...++.+++.+.| +++.+.+++..+ ... .
T Consensus 176 r~-~~i~l~~l~~~e~~~~l~~~~~~~~----------~~~---~-~~~~~~l~~~~~G-~~~~~~~~~~~~--~~~--~ 235 (250)
T 1njg_A 176 RC-LQFHLKALDVEQIRHQLEHILNEEH----------IAH---E-PRALQLLARAAEG-SLRDALSLTDQA--IAS--G 235 (250)
T ss_dssp TS-EEEECCCCCHHHHHHHHHHHHHHTT----------CCB---C-HHHHHHHHHHHTT-CHHHHHHHHHHH--HTT--T
T ss_pred Hh-hhccCCCCCHHHHHHHHHHHHHhcC----------CCC---C-HHHHHHHHHHcCC-CHHHHHHHHHHH--Hhc--c
Confidence 97 5899999999999999999987521 111 1 3345789999987 899999998733 322 2
Q ss_pred CCCccHHHHHHHH
Q psy4165 187 DGVLTEAMVMSKV 199 (242)
Q Consensus 187 ~~~~~~~~~~~a~ 199 (242)
.+.++.+++.+++
T Consensus 236 ~~~i~~~~v~~~~ 248 (250)
T 1njg_A 236 DGQVSTQAVSAML 248 (250)
T ss_dssp TSSBCHHHHHHHS
T ss_pred CceecHHHHHHHh
Confidence 3479999988765
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=110.57 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred ChHHHHHHhc-----CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHS-----GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~-----~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+||++|++++ +.+++++++..+...+ +.........|....... |.||||||+|.+.+.+ .....+
T Consensus 145 tLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vL~IDEi~~l~~~~-------~~q~~l 216 (440)
T 2z4s_A 145 HLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKK-VDILLIDDVQFLIGKT-------GVQTEL 216 (440)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTT-CSEEEEECGGGGSSCH-------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCC-CCEEEEeCcccccCCh-------HHHHHH
Confidence 3789999988 8899999988764322 111111112233333223 8999999999996421 122222
Q ss_pred HHHHHHhccCCCCeEEEEecCCccc---ccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCC
Q psy4165 75 NAFLYRTGEQSDKFMLVLASNTPQQ---FDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAP 149 (242)
Q Consensus 75 ~~lL~~l~~~~~~v~vI~tTn~~~~---ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~ 149 (242)
-.++..+. ..+..+||+|.+.+.. +++++++||. ..+++++|+.++|..|++..+... ++.+++
T Consensus 217 ~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~----------~~~i~~ 285 (440)
T 2z4s_A 217 FHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE----------HGELPE 285 (440)
T ss_dssp HHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH----------TCCCCT
T ss_pred HHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc----------CCCCCH
Confidence 23333332 2345566666666665 8899999996 789999999999999999998752 222222
Q ss_pred CChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 150 FDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 150 ~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
..+..|+..+.| +++++.+++..+.+.+... ...++.+++.+++....
T Consensus 286 ----e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 286 ----EVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp ----THHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-SSCCCHHHHHHHTSTTT
T ss_pred ----HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 234789999875 8999999998554444322 34699999999887654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-11 Score=115.68 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=102.9
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++|+.+ +.+++.++++.+.. .+ |+.+..++.+|..+....+|+||||||+|.+.+.+...+ ..
T Consensus 207 la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~ 285 (854)
T 1qvr_A 207 IVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AV 285 (854)
T ss_dssp HHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------
T ss_pred HHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hH
Confidence 788999987 89999999998863 44 899999999999999764589999999999987654432 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
.....+..+ +. .+++.+|++||.++ .+|+++.+||+. |+|+.|+.+++.+||+.++.++... .+
T Consensus 286 ~~~~~L~~~---l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~------~~ 353 (854)
T 1qvr_A 286 DAGNMLKPA---LA--RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVH------HG 353 (854)
T ss_dssp ------HHH---HH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHH---Hh--CCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhh------cC
Confidence 122223333 32 35678999999875 479999999995 9999999999999999888753211 11
Q ss_pred cccCCCChhHhHHHHHHhC-----CCCCHHHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHVT-----EGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~t-----~g~s~adi~~lv~~a~~~~ 182 (242)
.... +..+..++..+ .+|.+.....++.++.+..
T Consensus 354 ~~i~----~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 354 VRIS----DSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CEEC----HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHH
Confidence 1111 23335555543 4577888888887554443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=100.71 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=86.6
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--c-cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--M-GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~-~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++++++ +.+++.++++.+.. . .|.....+..++..+....+|+||+|||+|.+.+.+.... ..
T Consensus 59 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~ 137 (195)
T 1jbk_A 59 IVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AM 137 (195)
T ss_dssp HHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CC
T ss_pred HHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hH
Confidence 688888886 78999999887752 3 3677788999998776555589999999999986543322 11
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
.....+..++ + .+++.+|++||.+. .+|+++.+||+ .+++++|+.++|.+||
T Consensus 138 ~~~~~l~~~~---~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 138 DAGNMLKPAL---A--RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCHHHHHHHH---H--TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhh---c--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 1223333332 2 34678899999887 78999999998 7999999999999876
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=100.17 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=114.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc---ccchHH-HHHHHHHHHHHhCC--CcEEEEEecccccccccCCCccchHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP---MGSSGV-TAIHKVFDWASSSR--KGLVLFIDEADAFLRKRSSETISESLRATL 74 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~---~~g~~e-~~l~~~f~~A~~~~--~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l 74 (242)
+||+++|+.++.+++.++++.-.. ..|... ..-...|. .... .++||||||+|.+.+ .. .
T Consensus 61 ~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~---------~~---~ 126 (331)
T 2r44_A 61 LSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA---------KV---Q 126 (331)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH---------HH---H
T ss_pred HHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCCH---------HH---H
Confidence 479999999999999998742110 001000 00000000 0011 027999999999732 22 3
Q ss_pred HHHHHHhc-----------cCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchh
Q psy4165 75 NAFLYRTG-----------EQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPA 138 (242)
Q Consensus 75 ~~lL~~l~-----------~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~ 138 (242)
+.|+..|+ ..+.++++|+|+|..+ .+++++++||+..+++++|+.++|.+|++.++........
T Consensus 127 ~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~ 206 (331)
T 2r44_A 127 SALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQV 206 (331)
T ss_dssp HHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhc
Confidence 33444332 1244678888888543 3899999999989999999999999999998764211000
Q ss_pred ---h---------hcccccccCCCChhHhHHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 139 ---A---------QGKRRLKVAPFDYTSLCSKIAHVT-------------------EGLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 139 ---~---------~~~~~~~~~~~d~~~~l~~la~~t-------------------~g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
. ....++.++ +..++.+++.. .|.|++.+..+++.+.+.+.....
T Consensus 207 ~~~~~~~~i~~~~~~~~~v~~~----~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~ 282 (331)
T 2r44_A 207 QKIVSKNDVLEIRNEINKVTIS----ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR 282 (331)
T ss_dssp CCCSCHHHHHHHHHHHHTCBCC----HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC
Confidence 0 000011111 11223343321 266999999999977777766677
Q ss_pred CCccHHHHHHHHHHHHH
Q psy4165 188 GVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~~~ 204 (242)
..++.+++.+++..+..
T Consensus 283 ~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 283 DYVLPEDIKEVAYDILN 299 (331)
T ss_dssp SBCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhH
Confidence 78999999999988763
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=105.72 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=104.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHH------------HHHHHHHHhCCCcEEEEEecccccccccCCCc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAI------------HKVFDWASSSRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
++|+++|+.+ +.+++.++++.+.... ....+ ...|..+....+++||||||+|.+.+
T Consensus 62 ~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------ 133 (311)
T 4fcw_A 62 ELAKTLAATLFDTEEAMIRIDMTEYMEKH--AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------ 133 (311)
T ss_dssp HHHHHHHHHHHSCGGGEEEEEGGGCCSTT--HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------
T ss_pred HHHHHHHHHHcCCCcceEEeecccccccc--cHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------
Confidence 4799999987 5679999988765321 01111 01233333233269999999999832
Q ss_pred cchHHHHHHHHHHHHhccCC-----------CCeEEEEecCC--------------------------cccccHHHhccc
Q psy4165 66 ISESLRATLNAFLYRTGEQS-----------DKFMLVLASNT--------------------------PQQFDWAVNDRL 108 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l~~~~-----------~~v~vI~tTn~--------------------------~~~ld~al~~Rf 108 (242)
...+.|+..|+... .++++|+|||. ...++++|++||
T Consensus 134 ------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~ 207 (311)
T 4fcw_A 134 ------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRL 207 (311)
T ss_dssp ------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTC
T ss_pred ------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcC
Confidence 23444555443111 36789999998 668999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC--CCCHHHHHHHHHHH
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE--GLSGREIAKLGVAW 178 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~--g~s~adi~~lv~~a 178 (242)
+..+.+++|+.+++..|++.++.++.......+ ... .++ +..++.|++..- ..++++|++++..+
T Consensus 208 ~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~-~~~---~~~-~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 208 DEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR-ISL---ELT-EAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp SEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT-CEE---EEC-HHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC-cEE---EeC-HHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 999999999999999999999976432211000 001 122 344577777654 57788999998743
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-13 Score=119.04 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=44.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|+++|++++++|+.++++.+.+ ++| +.+..++.+|..|.... ++||+|.+..... .....+++++|
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~-----~~De~d~~~~~~~----~~~e~rvl~~L 135 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV-----RQQEIAKNRARAE----DVAEERILDAL 135 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH-----HHHHHHSCC-------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc-----hhhhhhhhhccch----hhHHHHHHHHH
Confidence 479999999999999999999887 347 58999999999998654 4899888754322 33457899999
Q ss_pred HHHhccCCCCeEEEEe-cCCcccccHHHh--cccccEEEeCCCCHH-HHHHHHH
Q psy4165 78 LYRTGEQSDKFMLVLA-SNTPQQFDWAVN--DRLDEMVEFPLPTLN-ERERLVR 127 (242)
Q Consensus 78 L~~l~~~~~~v~vI~t-Tn~~~~ld~al~--~Rfd~~i~~~~P~~~-~R~~Il~ 127 (242)
|.+||...+.--++++ ||+++.||++|+ +|||+.|++++|+.. .|.+|+.
T Consensus 136 L~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 136 LPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------------------------------------
T ss_pred HHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999744332233555 999999999999 799999999999988 7888863
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-11 Score=102.09 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=110.8
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
+||+++++++ +.+++++++.++...+ +.........|..... . |.||||||+|.+.+.+ .....+..
T Consensus 52 ~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~vL~iDEi~~l~~~~-------~~~~~l~~ 122 (324)
T 1l8q_A 52 HLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-S-VDLLLLDDVQFLSGKE-------RTQIEFFH 122 (324)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-T-CSEEEEECGGGGTTCH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-C-CCEEEEcCcccccCCh-------HHHHHHHH
Confidence 3789999998 8999999988775432 2222222223333332 2 7999999999986421 12223333
Q ss_pred HHHHhccCCCCeEEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
++..+. ..+..+|+++++.+. .+++++.+||+ ..+++++ +.++|.+|++.++...+. . ++
T Consensus 123 ~l~~~~-~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~----------~---l~ 187 (324)
T 1l8q_A 123 IFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL----------E---LR 187 (324)
T ss_dssp HHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC----------C---CC
T ss_pred HHHHHH-HCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC----------C---CC
Confidence 333332 234567777888877 68999999996 6899999 999999999999875322 1 22
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHH---Hhh-hcCCCc-cHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQAS---AYA-SEDGVL-TEAMVMSKVE 200 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~---~~~-~~~~~~-~~~~~~~a~~ 200 (242)
+..++.++..+ -+.+++.+++..+.+. +.. .....+ +.+++.+++.
T Consensus 188 -~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 188 -KEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp -HHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 34468899998 4778888888744332 000 112235 5566655554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-10 Score=95.54 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=118.8
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
+||++||+++++++...+++.+.. ...+..++.. ..++.|+||||+|.+.+ .....+...+..
T Consensus 66 TLa~~ia~~l~~~~~~~sg~~~~~-----~~~l~~~~~~---~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~ 128 (334)
T 1in4_A 66 TLAHIIASELQTNIHVTSGPVLVK-----QGDMAAILTS---LERGDVLFIDEIHRLNK---------AVEELLYSAIED 128 (334)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCCS-----HHHHHHHHHH---CCTTCEEEEETGGGCCH---------HHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEechHhcC-----HHHHHHHHHH---ccCCCEEEEcchhhcCH---------HHHHHHHHHHHh
Confidence 489999999999988887765422 1234444332 22368999999999853 112222111111
Q ss_pred hc---------------cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 TG---------------EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l~---------------~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
.. ..-..+.++++|+++..|++.+++||...+.+++|+.+++.+|++......+.
T Consensus 129 ~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---------- 198 (334)
T 1in4_A 129 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---------- 198 (334)
T ss_dssp SCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----------
T ss_pred cccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----------
Confidence 10 00124678889999999999999999989999999999999999998765321
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
. ++ +..+..+++++.| +++++.++++.+...+.....+.++.+++.+++...
T Consensus 199 ~---~~-~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 199 E---IE-DAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp C---BC-HHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred C---cC-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 1 22 3345889999886 678998999865555555556789999999988775
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.2e-12 Score=113.12 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
++|+++|..+ +.+++.++++ .++ |+.+..++.+|..+.... |+||||| +. .
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD---------~~----~- 277 (468)
T 3pxg_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAG-NIILFID---------AA----I- 277 (468)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC---------C-------
T ss_pred HHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcC-CeEEEEe---------Cc----h-
Confidence 3789999986 8899999887 444 888889999999999876 8999999 11 1
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
...+.|+..|. .+.+.+|++||.+. .+|+++.+||+ .|.|+.|+.+++.+||+.++.++... .+
T Consensus 278 --~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~------~~ 346 (468)
T 3pxg_A 278 --DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAH------HR 346 (468)
T ss_dssp --------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGG------SS
T ss_pred --hHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHh------cC
Confidence 12233433343 55789999999987 69999999998 69999999999999999988763211 11
Q ss_pred cccCCCChhHhHHHHHHhCCCC-----CHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHVTEGL-----SGREIAKLGVAWQA 180 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~t~g~-----s~adi~~lv~~a~~ 180 (242)
...+ +..+..++..+.+| .+.....++..+.+
T Consensus 347 ~~i~----~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 347 VSIT----DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp CSCC----HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 2221 33446666655444 45577777775544
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=83.00 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Q psy4165 118 TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMS 197 (242)
Q Consensus 118 ~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~ 197 (242)
|.++|.+||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~-----------~~vdl----~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~ 66 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-----------EEVDL----EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 66 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-----------TTCCT----HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-----------cccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 6899999999999875332 35777 99999999999999999999555444444456899999999
Q ss_pred HHHHHHHh
Q psy4165 198 KVEDSIRA 205 (242)
Q Consensus 198 a~~~~~~~ 205 (242)
|+.++...
T Consensus 67 Al~~~~ps 74 (83)
T 3aji_B 67 AYKTVIKK 74 (83)
T ss_dssp HHHHHCC-
T ss_pred HHHHHccC
Confidence 99887533
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.9e-10 Score=95.64 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=120.2
Q ss_pred hHHHHHHhc------CCcEEEEecCCccc-----------------ccch-HHHHHHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 2 FAKKLAHHS------GMDYAIMTGGDVAP-----------------MGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 2 lA~aiA~e~------~~~~~~v~~~~l~~-----------------~~g~-~e~~l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
|++++++++ +.+++.+++....+ ..|. ....+..++........|+||+|||+|.+
T Consensus 61 l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 61 VVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 788899888 89999998654321 0111 23345566666655544899999999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHhcc-CCCCeEEEEecCCc---ccccHHHhcccc-cEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 58 LRKRSSETISESLRATLNAFLYRTGE-QSDKFMLVLASNTP---QQFDWAVNDRLD-EMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 58 ~~~r~~~~~~~~~~~~l~~lL~~l~~-~~~~v~vI~tTn~~---~~ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
...... ..+..++..++. ...++.+|++||.+ ..+++.+.+||. ..+++++|+.++..++++..+..
T Consensus 141 ~~~~~~--------~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 141 VKKYND--------DILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp HHSSCS--------THHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hccCcC--------HHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 754311 245556555543 45578999999987 578888888886 49999999999999999998763
Q ss_pred cccchhhhcccccccCCCChhHhHHHHHHhCCC--CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 133 FVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
.. ....++ +..+..++..+.. -+++.+.+++..+...+.......++.+++..++....
T Consensus 213 ~~-----------~~~~~~-~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 213 AF-----------KPGVLP-DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HB-----------CSSCSC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hc-----------cCCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 11 001122 3344666666641 35667777887443333333456899999998887764
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-10 Score=97.95 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=114.5
Q ss_pred hHHHHHHhc-----------CCcEEEEecCCcc-cc------------------cch-HHHHHHHHHHHHHhCCCcEEEE
Q psy4165 2 FAKKLAHHS-----------GMDYAIMTGGDVA-PM------------------GSS-GVTAIHKVFDWASSSRKGLVLF 50 (242)
Q Consensus 2 lA~aiA~e~-----------~~~~~~v~~~~l~-~~------------------~g~-~e~~l~~~f~~A~~~~~p~Il~ 50 (242)
||+++++++ +.+++.+++.... +. .|. ....+..++..+... ++||+
T Consensus 61 la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~vli 138 (384)
T 2qby_B 61 VSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI--RAIIY 138 (384)
T ss_dssp HHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS--CEEEE
T ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC--CCEEE
Confidence 788899887 9999999976543 10 011 123355555555544 34999
Q ss_pred EecccccccccCCCccchHHHHH-HHHHHHHhccCCCCeEEEEecCCc---ccccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 51 IDEADAFLRKRSSETISESLRAT-LNAFLYRTGEQSDKFMLVLASNTP---QQFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 51 iDeiD~l~~~r~~~~~~~~~~~~-l~~lL~~l~~~~~~v~vI~tTn~~---~~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
|||+|.+...+. ... +..|+... .++.+|++||.+ +.+++++.+||...++|++|+.+++.+|+
T Consensus 139 lDEi~~l~~~~~--------~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 139 LDEVDTLVKRRG--------GDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp EETTHHHHHSTT--------SHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHH
T ss_pred EECHHHhccCCC--------CceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 999999965321 112 33443222 678999999988 78999999999889999999999999999
Q ss_pred HHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC--CHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 127 RLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL--SGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~--s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.++..- +....++ +..++.+++.+.+. .++.+.+++. .+...+.....++.+++..++....
T Consensus 207 ~~~~~~~-----------~~~~~~~-~~~~~~i~~~~~~~~G~~r~a~~~l~--~a~~~a~~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 207 SKYAEYG-----------LIKGTYD-DEILSYIAAISAKEHGDARKAVNLLF--RAAQLASGGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHT-----------SCTTSCC-SHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHHTTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhh-----------cccCCcC-HHHHHHHHHHHHhccCCHHHHHHHHH--HHHHHhcCCCccCHHHHHHHHHHHh
Confidence 9988630 0001122 23346677776522 3344445555 2333344456899999999988765
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=93.02 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=107.5
Q ss_pred hHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||++++++++ .+++.++++++.....+. +. ...+|.+|+|||+|.+... ......+..++
T Consensus 68 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~vliiDe~~~~~~~-------~~~~~~l~~~l 130 (242)
T 3bos_A 68 LIHAACARANELERRSFYIPLGIHASISTAL-------LE---GLEQFDLICIDDVDAVAGH-------PLWEEAIFDLY 130 (242)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG-------GT---TGGGSSEEEEETGGGGTTC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-------HH---hccCCCEEEEeccccccCC-------HHHHHHHHHHH
Confidence 6788888765 688888888776543111 11 1123799999999998532 11123333444
Q ss_pred HHhccCCCCe-EEEEecCCcc---cccHHHhcccc--cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCCh
Q psy4165 79 YRTGEQSDKF-MLVLASNTPQ---QFDWAVNDRLD--EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDY 152 (242)
Q Consensus 79 ~~l~~~~~~v-~vI~tTn~~~---~ld~al~~Rfd--~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~ 152 (242)
..... .+.+ +|+.+++.+. .+++++.+||. ..+++++|+.+++.++++.++...+. . ++
T Consensus 131 ~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----------~---~~- 195 (242)
T 3bos_A 131 NRVAE-QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----------Q---LP- 195 (242)
T ss_dssp HHHHH-HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----------C---CC-
T ss_pred HHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----------C---CC-
Confidence 43322 2233 5555554444 56688999986 89999999999999999999875321 1 22
Q ss_pred hHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 153 TSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 153 ~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+..++.+++.+.| +.+++.+++..+...+.. ....++.+++.+++.
T Consensus 196 ~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~-~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 196 EDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV-HQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-hCCCCcHHHHHHHhh
Confidence 3445788888865 888888888744443322 345799999988764
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=103.73 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=90.4
Q ss_pred hHHHHHHhc----------CCcEEEEecCCcccc-----------------cchHHHHHHHHHHHH-HhCCCcEEEEEec
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAPM-----------------GSSGVTAIHKVFDWA-SSSRKGLVLFIDE 53 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~~-----------------~g~~e~~l~~~f~~A-~~~~~p~Il~iDe 53 (242)
+++++++++ ++.++.++|..+.+. .+.+...++.+|... +...+|+||+|||
T Consensus 61 ~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE 140 (318)
T 3te6_A 61 LVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQN 140 (318)
T ss_dssp HHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEec
Confidence 678888887 467899998775431 134566788888875 2223489999999
Q ss_pred ccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccc----ccHHHhcccc-cEEEeCCCCHHHHHHHHHH
Q psy4165 54 ADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQ----FDWAVNDRLD-EMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 54 iD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~----ld~al~~Rfd-~~i~~~~P~~~~R~~Il~~ 128 (242)
+|.+. . +.++..|+.+.....++++||+++|..+. |++++.+||. ..|+|++++.++..+|++.
T Consensus 141 ~d~l~----~-------q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 141 PENLL----S-------EKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp CSSSC----C-------THHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred HHHhh----c-------chHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHH
Confidence 99997 1 23555666555556678999999998764 4555568997 5899999999999999999
Q ss_pred HHhcc
Q psy4165 129 YFDKF 133 (242)
Q Consensus 129 ~l~~~ 133 (242)
-+...
T Consensus 210 Rl~~~ 214 (318)
T 3te6_A 210 RLKSL 214 (318)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99764
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=110.45 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=105.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-------------cchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-------------GSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-------------~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+++|+.++.+|+.++++.+..+ .|..+. ..+....+... ++||||||+|.+-
T Consensus 503 ~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~-~~vl~lDEi~~~~--------- 570 (758)
T 1r6b_X 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHP-HAVLLLDEIEKAH--------- 570 (758)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCS-SEEEEEETGGGSC---------
T ss_pred HHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCC-CcEEEEeCccccC---------
Confidence 4799999999999999999887542 132221 22334444444 7999999999873
Q ss_pred hHHHHHHHHHHHHhccC-----------CCCeEEEEecCCcc-------------------------cccHHHhcccccE
Q psy4165 68 ESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTPQ-------------------------QFDWAVNDRLDEM 111 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~~-------------------------~ld~al~~Rfd~~ 111 (242)
. .+++.|++.|+.. -.++++|+|||... .++|+|++||+..
T Consensus 571 ~---~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~ 647 (758)
T 1r6b_X 571 P---DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_dssp H---HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEE
T ss_pred H---HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc
Confidence 2 2455566655421 13578999999854 7889999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC--CCCCHHHHHHHHHH
Q psy4165 112 VEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT--EGLSGREIAKLGVA 177 (242)
Q Consensus 112 i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t--~g~s~adi~~lv~~ 177 (242)
|.|++|+.+++..|++.++.++...... .++.+ .++ +..++.|++.. .++..++++++++.
T Consensus 648 i~~~~l~~~~~~~i~~~~l~~~~~~~~~---~~~~~-~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~ 710 (758)
T 1r6b_X 648 IWFDHLSTDVIHQVVDKFIVELQVQLDQ---KGVSL-EVS-QEARNWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHH---TTEEE-EEC-HHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHHHHH---CCcEE-EeC-HHHHHHHHHhCCCcCCCchHHHHHHHH
Confidence 9999999999999999999754221110 00000 111 33446677643 34678899988863
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=114.14 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=102.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|+++|+.+ +.+|+.++++.+......+ -..++...+... ++||||||||.+- . .+++.|
T Consensus 536 ~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~---~~~l~~~~~~~~-~~vl~lDEi~~~~---------~---~~~~~L 599 (758)
T 3pxi_A 536 ELARALAESIFGDEESMIRIDMSEYMEKHSTS---GGQLTEKVRRKP-YSVVLLDAIEKAH---------P---DVFNIL 599 (758)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC------CHHHHHHCS-SSEEEEECGGGSC---------H---HHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEEechhcccccccc---cchhhHHHHhCC-CeEEEEeCccccC---------H---HHHHHH
Confidence 3799999997 7899999999998754222 122233344343 7999999999872 2 344555
Q ss_pred HHHhcc-----------CCCCeEEEEecCCccc------------ccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccc
Q psy4165 78 LYRTGE-----------QSDKFMLVLASNTPQQ------------FDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFV 134 (242)
Q Consensus 78 L~~l~~-----------~~~~v~vI~tTn~~~~------------ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~ 134 (242)
|..|+. ...++++|+|||.+.. ++|+|++||+..|.|++|+.+++.+|++.++.++.
T Consensus 600 l~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~ 679 (758)
T 3pxi_A 600 LQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLT 679 (758)
T ss_dssp HHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred HHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHH
Confidence 555532 2345799999997554 88999999999999999999999999999997643
Q ss_pred cchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 135 LQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 135 ~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
...... +... .++ +..++.|++. ...+..++|++++.
T Consensus 680 ~~~~~~---~~~~-~~~-~~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 680 KRLKEQ---DLSI-ELT-DAAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHTT---TCEE-EEC-HHHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHhC---CCeE-EEC-HHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 221110 0110 122 3344667664 23467788888886
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=102.10 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=102.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccc--ccchH-HHHHHHHHHHHH----hCCCcEEEEEecccccccccCCCccchH--HH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAP--MGSSG-VTAIHKVFDWAS----SSRKGLVLFIDEADAFLRKRSSETISES--LR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~--~~g~~-e~~l~~~f~~A~----~~~~p~Il~iDeiD~l~~~r~~~~~~~~--~~ 71 (242)
++|+++|+.++.+|+.++++.+.. +.|+. +..+..+|..+. ... ++||||||+|.+...+........ ..
T Consensus 87 ~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 87 LMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ-KGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHT-TSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcC-CeEEEEcCHHHHhhhcCCCceecccchH
Confidence 479999999999999999988763 33543 455666666432 223 799999999999876543221111 11
Q ss_pred HHHHHHHHHhccC---------------------CCCeEEEEecCC----------------------------------
Q psy4165 72 ATLNAFLYRTGEQ---------------------SDKFMLVLASNT---------------------------------- 96 (242)
Q Consensus 72 ~~l~~lL~~l~~~---------------------~~~v~vI~tTn~---------------------------------- 96 (242)
.+.+.||..|+.. ..++++|+|||.
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~ 245 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhh
Confidence 3556666666522 145678888762
Q ss_pred -------cccccHHHhcccccEEEeCCCCHHHHHHHHHH----HHhccccchhhhcccccccCCCChhHhHHHHHHhCC-
Q psy4165 97 -------PQQFDWAVNDRLDEMVEFPLPTLNERERLVRL----YFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE- 164 (242)
Q Consensus 97 -------~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~- 164 (242)
...+.|.|.+||+..+.|++++.++...|+.. ++.++.......+ ..+. ++ +..+..|++...
T Consensus 246 ~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~a~~~l~~~~~~ 320 (376)
T 1um8_A 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE-VDLI---FE-EEAIKEIAQLALE 320 (376)
T ss_dssp CCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT-CEEE---EC-HHHHHHHHHHHHH
T ss_pred cCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC-ceEE---EC-HHHHHHHHHHhcc
Confidence 12367888899999999999999999999973 3221100000000 0111 11 334466766632
Q ss_pred -CCCHHHHHHHHHHHHHH
Q psy4165 165 -GLSGREIAKLGVAWQAS 181 (242)
Q Consensus 165 -g~s~adi~~lv~~a~~~ 181 (242)
+...++|++++..+...
T Consensus 321 ~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 321 RKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp TTCTGGGHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHH
Confidence 36788888888755443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=94.54 Aligned_cols=177 Identities=12% Similarity=0.074 Sum_probs=118.2
Q ss_pred hHHHHHHhc----CCcEEEEecCCcccc-----------------cc-hHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPM-----------------GS-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~-----------------~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~ 59 (242)
|++++++++ +.+++.+++....+. .| .....+..+........+|.||+|||+|.+.
T Consensus 60 l~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~- 138 (389)
T 1fnn_A 60 TLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA- 138 (389)
T ss_dssp HHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-
T ss_pred HHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-
Confidence 788999888 788999997665421 01 1222333333344434448999999999981
Q ss_pred ccCCCccchHHHHHHHHHHHHhccCC----CCeEEEEecCCc---ccccHHHhccccc-EEEeCCCCHHHHHHHHHHHHh
Q psy4165 60 KRSSETISESLRATLNAFLYRTGEQS----DKFMLVLASNTP---QQFDWAVNDRLDE-MVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 60 ~r~~~~~~~~~~~~l~~lL~~l~~~~----~~v~vI~tTn~~---~~ld~al~~Rfd~-~i~~~~P~~~~R~~Il~~~l~ 131 (242)
...+..|+..+.... .++.+|++||.+ ..+++.+.+||.. .++|++++.++..++++..+.
T Consensus 139 -----------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 139 -----------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp -----------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 124455555554222 478999999988 7788998899875 899999999999999999886
Q ss_pred ccccchhhhcccccccCCCChhHhHHHHHHhCCC--------CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 132 KFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--------LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--------~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
.... ...++ +..++.+++.+.+ -.++.+.+++..+...+.......++.+++..++...
T Consensus 208 ~~~~-----------~~~~~-~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 208 AGLA-----------EGSYS-EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHBC-----------TTSSC-HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred hhcC-----------CCCCC-HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 4110 01222 3455788888842 2567777888754444444455678888888876654
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=111.43 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=99.3
Q ss_pred ChHHHHHHhc----------CCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchH
Q psy4165 1 MFAKKLAHHS----------GMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISES 69 (242)
Q Consensus 1 llA~aiA~e~----------~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~ 69 (242)
++|+++|+.+ +++++.+++ ..++ |+.+..++.+|..+.... |+||||| +.
T Consensus 216 ~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~-~~iLfiD---------~~------ 276 (758)
T 3pxi_A 216 AIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAG-NIILFID---------AA------ 276 (758)
T ss_dssp HHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC---------C-------
T ss_pred HHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcC-CEEEEEc---------Cc------
Confidence 3799999997 889998887 4444 888999999999999876 9999999 11
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccc
Q psy4165 70 LRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRR 144 (242)
Q Consensus 70 ~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~ 144 (242)
....+.|+..++ .+.+.+|++||... .+|+++.+||. .|+|+.|+.+++.+||+.++.++... .+
T Consensus 277 -~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~------~~ 346 (758)
T 3pxi_A 277 -IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAH------HR 346 (758)
T ss_dssp --------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGG------SS
T ss_pred -hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHh------cC
Confidence 112233443343 55789999999988 79999999995 79999999999999999887653221 11
Q ss_pred cccCCCChhHhHHHHHHh-----CCCCCHHHHHHHHHHHHHHH
Q psy4165 145 LKVAPFDYTSLCSKIAHV-----TEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 145 ~~~~~~d~~~~l~~la~~-----t~g~s~adi~~lv~~a~~~~ 182 (242)
...+ +..+..++.. ++++.+.....++..+.+.+
T Consensus 347 ~~i~----~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 347 VSIT----DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp CSCC----HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 1111 2233444443 34677888888887554443
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=105.34 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=107.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHH-------HHHHHHHHHHH----hCCCcEEEEEecccccccccCCCccch
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGV-------TAIHKVFDWAS----SSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e-------~~l~~~f~~A~----~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
++|+++|+++|++++.++++++.+.. .... ..+..+|..+. ...+|+||||||+|.+.....
T Consensus 92 tla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------ 165 (516)
T 1sxj_A 92 TAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------ 165 (516)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------
T ss_pred HHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------
Confidence 37999999999999999999876532 1110 01223344331 123489999999999975321
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVA 148 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~ 148 (242)
..+..|+..++....++++|+++.....+++ + +|+...++|++|+.+++.+++...+.+. ++..+
T Consensus 166 ---~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~-l-~~r~~~i~f~~~~~~~~~~~L~~i~~~~----------~~~i~ 230 (516)
T 1sxj_A 166 ---GGVGQLAQFCRKTSTPLILICNERNLPKMRP-F-DRVCLDIQFRRPDANSIKSRLMTIAIRE----------KFKLD 230 (516)
T ss_dssp ---THHHHHHHHHHHCSSCEEEEESCTTSSTTGG-G-TTTSEEEECCCCCHHHHHHHHHHHHHHH----------TCCCC
T ss_pred ---HHHHHHHHHHHhcCCCEEEEEcCCCCccchh-h-HhceEEEEeCCCCHHHHHHHHHHHHHHc----------CCCCC
Confidence 1234455555544555666666555455553 4 4445699999999999999998887652 22223
Q ss_pred CCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q psy4165 149 PFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDS 202 (242)
Q Consensus 149 ~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~ 202 (242)
+ ..+..|++.+. +|++.+++.++..+ .....++.+++.+++...
T Consensus 231 ~----~~l~~la~~s~----GdiR~~i~~L~~~~--~~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 231 P----NVIDRLIQTTR----GDIRQVINLLSTIS--TTTKTINHENINEISKAW 274 (516)
T ss_dssp T----THHHHHHHHTT----TCHHHHHHHHTHHH--HHSSCCCTTHHHHHHHHH
T ss_pred H----HHHHHHHHHcC----CcHHHHHHHHHHHH--hcCCCCchHHHHHHHHhh
Confidence 2 23478888864 46666666444333 345567777777666533
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=93.92 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=107.2
Q ss_pred hHHHHHHhcC------CcEEEEecCCcccccchHHHHHHHHHHHHH---------------hCCCcEEEEEecccccccc
Q psy4165 2 FAKKLAHHSG------MDYAIMTGGDVAPMGSSGVTAIHKVFDWAS---------------SSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 2 lA~aiA~e~~------~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~---------------~~~~p~Il~iDeiD~l~~~ 60 (242)
+|+++|++++ ..++.+++++... ...+++.+.... ....+.||||||+|.+.+
T Consensus 74 la~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~- 147 (353)
T 1sxj_D 74 TILALTKELYGPDLMKSRILELNASDERG-----ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA- 147 (353)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEECSSSCCC-----HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-
T ss_pred HHHHHHHHhCCCcccccceEEEccccccc-----hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-
Confidence 6888888865 4588888877522 112222221111 112367999999999843
Q ss_pred cCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhh
Q psy4165 61 RSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQ 140 (242)
Q Consensus 61 r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~ 140 (242)
...+.|+..++.......+|++||.+..+++++++|+. .++|++|+.++...+++..+.+.+
T Consensus 148 -----------~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~------ 209 (353)
T 1sxj_D 148 -----------DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQEN------ 209 (353)
T ss_dssp -----------HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTT------
T ss_pred -----------HHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhC------
Confidence 12355666666556667788899999999999999997 899999999999999999886421
Q ss_pred cccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC--C-CccHHHHHHHH
Q psy4165 141 GKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED--G-VLTEAMVMSKV 199 (242)
Q Consensus 141 ~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~--~-~~~~~~~~~a~ 199 (242)
+. ++ +..++.+++.+.| .++.+.+++.. +...+.+. . .++.+++.+++
T Consensus 210 ----~~---i~-~~~l~~l~~~~~G-~~r~~~~~l~~--~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 210 ----VK---CD-DGVLERILDISAG-DLRRGITLLQS--ASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp ----CC---CC-HHHHHHHHHHTSS-CHHHHHHHHHH--THHHHHHHCSCCCCCHHHHHHHH
T ss_pred ----CC---CC-HHHHHHHHHHcCC-CHHHHHHHHHH--HHHhcCCCccCccccHHHHHHHh
Confidence 11 22 3445888988875 45555555542 22222221 1 68888887664
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-09 Score=92.55 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=97.3
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++.++..+.. ..++.||+|||+|.+.. ...+.|+..++.....+++|++|+.+..+++.+.+|+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------HHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH------------HHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 35566665542 22379999999999832 2456677777777778999999999999999999998
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG 188 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~ 188 (242)
..++|++|+.++..++++.++.+.+. .. + ...+..+++.+.| +++++.+++..+ ..++ .+
T Consensus 171 -~~i~~~~l~~~~~~~~l~~~~~~~~~----------~~---~-~~a~~~l~~~~~G-~~r~~~~~l~~~--~~~~--~~ 230 (373)
T 1jr3_A 171 -LQFHLKALDVEQIRHQLEHILNEEHI----------AH---E-PRALQLLARAAEG-SLRDALSLTDQA--IASG--DG 230 (373)
T ss_dssp -EEEECCCCCHHHHHHHHHHHHHHHTC----------CB---C-HHHHHHHHHHSSS-CHHHHHHHHHHH--HHHT--TT
T ss_pred -eEeeCCCCCHHHHHHHHHHHHHHcCC----------CC---C-HHHHHHHHHHCCC-CHHHHHHHHHHH--HHhc--CC
Confidence 59999999999999999999875322 11 1 3345788999876 788888888633 3332 34
Q ss_pred CccHHHHHHH
Q psy4165 189 VLTEAMVMSK 198 (242)
Q Consensus 189 ~~~~~~~~~a 198 (242)
.++.+++.+.
T Consensus 231 ~i~~~~v~~~ 240 (373)
T 1jr3_A 231 QVSTQAVSAM 240 (373)
T ss_dssp CBCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 5666665443
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.2e-10 Score=93.95 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=105.1
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHH-HhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWA-SSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A-~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
+|+++|+++ +.+++.+++++..+.. .....+....... ....++.||+|||+|.+.. ...+
T Consensus 54 la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~ 120 (319)
T 2chq_A 54 TAIALARDLFGENWRDNFIEMNASDERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQA 120 (319)
T ss_dssp HHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHH
T ss_pred HHHHHHHHhcCCcccCCeEEEeCccccChH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHH
Confidence 688888886 4568888887653311 1111222221110 0112379999999999842 2345
Q ss_pred HHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.|+..++..+.++.+|++||.+..+++++.+|+. .++|++|+.+++.++++.++.+.+. . ++ +..
T Consensus 121 ~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~----------~---i~-~~~ 185 (319)
T 2chq_A 121 ALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV----------K---IT-EDG 185 (319)
T ss_dssp TTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCC----------C---BC-HHH
T ss_pred HHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCC----------C---CC-HHH
Confidence 5666677777788999999999999999999997 8999999999999999999875322 1 12 334
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
++.++..+.| +.+.+.+++. ..+.. .+.++.+++.+.
T Consensus 186 l~~l~~~~~G-~~r~~~~~l~---~~~~~--~~~i~~~~v~~~ 222 (319)
T 2chq_A 186 LEALIYISGG-DFRKAINALQ---GAAAI--GEVVDADTIYQI 222 (319)
T ss_dssp HHHHHHTTTT-CHHHHHHHHH---HHHHS--SSCBCHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHH---HHHHc--CCCCCHHHHHHH
Confidence 5777776644 4444444443 33322 345666555443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=90.00 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=81.2
Q ss_pred hHHHHHHhc----------CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHS----------GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~----------~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
+|+++++++ +.+++.+++..+.. .+ |.....+..++..+.....|+||||||+|.+.+.+.......
T Consensus 59 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~ 138 (187)
T 2p65_A 59 IVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL 138 (187)
T ss_dssp HHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC
T ss_pred HHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch
Confidence 688898886 88999998877652 23 667778899998888775589999999999986654221112
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEecCCcc-----cccHHHhcccccEEEeCCCC
Q psy4165 69 SLRATLNAFLYRTGEQSDKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPT 118 (242)
Q Consensus 69 ~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~ 118 (242)
.....+..+ ++ ..++++|++||.+. .+|+++.+||+ .+++++|+
T Consensus 139 ~~~~~l~~~---~~--~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 139 DAGNILKPM---LA--RGELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp CTHHHHHHH---HH--TTCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHHH---Hh--cCCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 222233333 32 35688999999876 68999999999 59999986
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-09 Score=91.32 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=108.9
Q ss_pred hHHHHHHhc-----CCcEEEEecCCcccccchHHHHHHHHHHHHH----h--CCCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHS-----GMDYAIMTGGDVAPMGSSGVTAIHKVFDWAS----S--SRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~-----~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~----~--~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|+++ +.+++.+++++..+ ...+++++.... . ..++.||+|||+|.+..
T Consensus 58 la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------- 121 (323)
T 1sxj_B 58 SVHCLAHELLGRSYADGVLELNASDDRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------- 121 (323)
T ss_dssp HHHHHHHHHHGGGHHHHEEEECTTSCCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------
T ss_pred HHHHHHHHhcCCcccCCEEEecCccccC-----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------
Confidence 678888875 45688888766421 334555555444 1 11279999999999843
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
...+.|+..++....++.+|++||.+..+++++.+|+. .++|++|+.++..++++..+.+.+ +..+
T Consensus 122 -~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~----------~~~~-- 187 (323)
T 1sxj_B 122 -GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLED----------VKYT-- 187 (323)
T ss_dssp -HHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT----------CCBC--
T ss_pred -HHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcC----------CCCC--
Confidence 12455666666666778899999999999999999997 999999999999999999886522 1111
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~ 200 (242)
+..+..+++.+.| +++.+.+++. ..... .+.++.+++.+.+.
T Consensus 188 --~~~~~~l~~~~~G-~~r~a~~~l~---~~~~~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 188 --NDGLEAIIFTAEG-DMRQAINNLQ---STVAG--HGLVNADNVFKIVD 229 (323)
T ss_dssp --HHHHHHHHHHHTT-CHHHHHHHHH---HHHHH--HSSBCHHHHHHHHT
T ss_pred --HHHHHHHHHHcCC-CHHHHHHHHH---HHHhc--CCCcCHHHHHHHHC
Confidence 3344778888754 4555555554 22222 24577777766543
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=93.12 Aligned_cols=147 Identities=15% Similarity=0.059 Sum_probs=93.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHH----hc------cCCCCeEEEEecCCcc-cccHHHhcccccEEEe
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYR----TG------EQSDKFMLVLASNTPQ-QFDWAVNDRLDEMVEF 114 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~----l~------~~~~~v~vI~tTn~~~-~ld~al~~Rfd~~i~~ 114 (242)
++||||||+|.+.. .....+..++.. +. ....++++|+|||... .++++|++||+..+++
T Consensus 145 ~~vl~iDEi~~l~~---------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 145 RGYLYIDECNLLED---------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp TEEEEETTGGGSCH---------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEEC
T ss_pred CCEEEEeChhhCCH---------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEc
Confidence 68999999999842 222233333332 10 0123689999999754 8999999999988999
Q ss_pred CCC-CHHHHHHHHHHHHhccccch-------------------hhhcccccccCCCChhHhHHHHHHhCCC---CCHHHH
Q psy4165 115 PLP-TLNERERLVRLYFDKFVLQP-------------------AAQGKRRLKVAPFDYTSLCSKIAHVTEG---LSGREI 171 (242)
Q Consensus 115 ~~P-~~~~R~~Il~~~l~~~~~~~-------------------~~~~~~~~~~~~~d~~~~l~~la~~t~g---~s~adi 171 (242)
++| +.++|.+|++..+....... .......+ .++ +..++.+++...| -+.+.+
T Consensus 216 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ls-~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKV---EAP-NTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGC---BCC-HHHHHHHHHHHHHSSSCSHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCC---CCC-HHHHHHHHHHHHHhCCCCccHH
Confidence 999 78888899987532110000 00000011 122 2233445444432 377999
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
.++++.|.+.+.......++.+++.+++..+...
T Consensus 292 ~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 292 LTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 9999866666665666789999999998877533
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-11 Score=82.82 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 120 NERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 120 ~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
++|.+||+.+++++++. .++|+ +.||+.|+||||+||.++|++|...+.......++.+||..|+
T Consensus 1 ~~R~~Il~~~l~~~~~~-----------~~vdl----~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al 65 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-----------PEADL----DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAY 65 (82)
T ss_dssp -------------CEEC-----------TTCCS----TTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCC-----------CcCCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 47999999999875432 35676 8999999999999999999976666665566689999999999
Q ss_pred HHHH
Q psy4165 200 EDSI 203 (242)
Q Consensus 200 ~~~~ 203 (242)
.++.
T Consensus 66 ~~v~ 69 (82)
T 2dzn_B 66 ATQV 69 (82)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8875
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=87.36 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred hHHHHHHhcC-----CcEEEEecCCcccccchHHHHHHHHHHH-HHhC----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSG-----MDYAIMTGGDVAPMGSSGVTAIHKVFDW-ASSS----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~-----~~~~~v~~~~l~~~~g~~e~~l~~~f~~-A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|++++ .+++.+++++..+ ...++..+.. +... .++.||+|||+|.+..
T Consensus 62 la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------ 124 (327)
T 1iqp_A 62 AALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------ 124 (327)
T ss_dssp HHHHHHHHHHGGGHHHHEEEEETTCHHH-----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------
T ss_pred HHHHHHHHhcCCcccCceEEeeccccCc-----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------
Confidence 6888888864 3578888765421 1222222221 1111 2379999999999842
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..++.....+.+|++||.+..+++++.+|+. .++|++|+.++..++++..+.+.+. ..+
T Consensus 125 ~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~----------~~~--- 190 (327)
T 1iqp_A 125 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGL----------ELT--- 190 (327)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTC----------EEC---
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCC----------CCC---
Confidence 23455666666666778899999999999999999997 8999999999999999998875321 111
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+..++.++..+.| +++.+.+++.
T Consensus 191 -~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 191 -EEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp -HHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred -HHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3345778887754 5555555554
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-09 Score=102.77 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=104.4
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------ch-----HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SS-----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI 66 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~-----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~ 66 (242)
++|++|++.+ +.+|+.++++.+.... |. +......+....+... ++||||||+|.+-
T Consensus 603 ~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~-~~vl~lDEi~~l~-------- 673 (854)
T 1qvr_A 603 ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP-YSVILFDEIEKAH-------- 673 (854)
T ss_dssp HHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS-SEEEEESSGGGSC--------
T ss_pred HHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCC-CeEEEEecccccC--------
Confidence 4799999998 7899999998876531 11 0011123333344333 7999999999872
Q ss_pred chHHHHHHHHHHHHhccC-----------CCCeEEEEecCC--------------------------cccccHHHhcccc
Q psy4165 67 SESLRATLNAFLYRTGEQ-----------SDKFMLVLASNT--------------------------PQQFDWAVNDRLD 109 (242)
Q Consensus 67 ~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~--------------------------~~~ld~al~~Rfd 109 (242)
..+++.|+..|+.. -.++++|+|||. ...+.|+|++||+
T Consensus 674 ----~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~ 749 (854)
T 1qvr_A 674 ----PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD 749 (854)
T ss_dssp ----HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS
T ss_pred ----HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC
Confidence 23556666666522 135789999997 2346788889999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC--CCCHHHHHHHHHH
Q psy4165 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE--GLSGREIAKLGVA 177 (242)
Q Consensus 110 ~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~--g~s~adi~~lv~~ 177 (242)
..+.|++|+.++...|++.++.++...... .++.. .++ +..++.|+...- .+..++|++++..
T Consensus 750 ~~i~~~pl~~edi~~i~~~~l~~~~~~~~~---~~~~~-~~~-~~a~~~L~~~~~~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 750 EIVVFRPLTKEQIRQIVEIQLSYLRARLAE---KRISL-ELT-EAAKDFLAERGYDPVFGARPLRRVIQR 814 (854)
T ss_dssp BCCBCCCCCHHHHHHHHHHHHHHHHHHHHT---TTCEE-EEC-HHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHHHHHHHh---CCceE-EEC-HHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 999999999999999999999764322110 00000 122 344567777643 5688899998863
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-10 Score=100.06 Aligned_cols=181 Identities=17% Similarity=0.075 Sum_probs=98.7
Q ss_pred ChHHHHHHhcCC--cEEEEecCC-----ccccc-chHHHHHHHHHHHHHhCC--CcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGM--DYAIMTGGD-----VAPMG-SSGVTAIHKVFDWASSSR--KGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~--~~~~v~~~~-----l~~~~-g~~e~~l~~~f~~A~~~~--~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+||++||+.++. +|..+++.- +.+.+ +..... ...|..+.... .|+|||||||+.+. .
T Consensus 56 ~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~---------~-- 123 (500)
T 3nbx_X 56 LIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG---------P-- 123 (500)
T ss_dssp HHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCC---------H--
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc---------H--
Confidence 479999998854 566655532 22211 111111 12232222110 26799999998752 2
Q ss_pred HHHHHHHHHHhcc----------CCCCeEEEEecCCccc---ccHHHhcccccEEEeCCCCH-HHHHHHHHHHHhccccc
Q psy4165 71 RATLNAFLYRTGE----------QSDKFMLVLASNTPQQ---FDWAVNDRLDEMVEFPLPTL-NERERLVRLYFDKFVLQ 136 (242)
Q Consensus 71 ~~~l~~lL~~l~~----------~~~~v~vI~tTn~~~~---ld~al~~Rfd~~i~~~~P~~-~~R~~Il~~~l~~~~~~ 136 (242)
...+.|+..|++ ..+..++|+|||.+.. +.+++++||...+++++|+. ++|..|++.+.......
T Consensus 124 -~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~ 202 (500)
T 3nbx_X 124 -AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP 202 (500)
T ss_dssp -HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCC
T ss_pred -HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCC
Confidence 234455555531 1112356888886433 44599999999999999987 78899998765321000
Q ss_pred hhhhccccc----------ccCCCCh-hHhHHHHHHhC---------CCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 137 PAAQGKRRL----------KVAPFDY-TSLCSKIAHVT---------EGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 137 ~~~~~~~~~----------~~~~~d~-~~~l~~la~~t---------~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
... ...+ ....+.+ +..++.+++.. .|.|++.+..+++.|++.+....+..++.+|+.
T Consensus 203 ~~~--~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 203 VPD--ALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp SCT--TTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred CCc--cceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 000 0000 0001111 12234444433 589999999999988777776666666665554
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=90.66 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=97.8
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEe---------cC---CcccccHHHhcccccEEE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLA---------SN---TPQQFDWAVNDRLDEMVE 113 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~t---------Tn---~~~~ld~al~~Rfd~~i~ 113 (242)
|.|+||||+|.+. ....+.||+.|+++..++++++| |+ .+..|+|.+++||.. +.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~~ 362 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-IR 362 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-EE
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcce-ee
Confidence 4699999999993 34678888889877777555455 33 288999999999985 69
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhcCCCccH
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVT-EGLSGREIAKLGVAWQASAYASEDGVLTE 192 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t-~g~s~adi~~lv~~a~~~~~~~~~~~~~~ 192 (242)
|++|+.++..++++..+...+. . ++ +..+..++..+ .| +++..-.++..|...+...+.+.++.
T Consensus 363 ~~~~~~~e~~~iL~~~~~~~~~----------~---~~-~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~ 427 (456)
T 2c9o_A 363 TMLYTPQEMKQIIKIRAQTEGI----------N---IS-EEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEK 427 (456)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC----------C---BC-HHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCH
T ss_pred CCCCCHHHHHHHHHHHHHHhCC----------C---CC-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCH
Confidence 9999999999999988764211 1 12 33446677776 54 88888888886555565567779999
Q ss_pred HHHHHHHHHHH
Q psy4165 193 AMVMSKVEDSI 203 (242)
Q Consensus 193 ~~~~~a~~~~~ 203 (242)
+++.+++.-+.
T Consensus 428 ~~v~~~~~~~~ 438 (456)
T 2c9o_A 428 EHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 99999987654
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=80.81 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhc
Q psy4165 30 VTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND 106 (242)
Q Consensus 30 e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~ 106 (242)
...++++++.+... +++.|++|||+|.+.. ...+.||+.+++.+.++++|++||.++.+++.+++
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 34577777766532 2369999999999842 24578888898888889999999999999999999
Q ss_pred ccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 107 RLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 107 Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
|+. .++|++|+.++..++++...
T Consensus 158 Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 158 RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred cce-eeeCCCCCHHHHHHHHHHhc
Confidence 996 89999999999999888764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=81.48 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHH
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERER 124 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~ 124 (242)
+|.||+|||+|.+- . ...+.|+..++....+..+|.+||.+..+.+++++|+ ..++|++|+.+++..
T Consensus 134 ~~~vlilDE~~~L~---------~---~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 134 RYKCVIINEANSLT---------K---DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp CCEEEEEECTTSSC---------H---HHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHH
T ss_pred CCeEEEEeCccccC---------H---HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHH
Confidence 37899999999962 1 1234555556555566889999999999999999999 689999999999999
Q ss_pred HHHHHHhccccchhhhcccccccC-CCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPAAQGKRRLKVA-PFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 125 Il~~~l~~~~~~~~~~~~~~~~~~-~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
+++..+.+. ++..+ + ..++.+++.+.| +.+++.+++.
T Consensus 201 ~l~~~~~~~----------~~~~~~~----~~l~~i~~~~~G-~~r~a~~~l~ 238 (354)
T 1sxj_E 201 ILSDVVTNE----------RIQLETK----DILKRIAQASNG-NLRVSLLMLE 238 (354)
T ss_dssp HHHHHHHHH----------TCEECCS----HHHHHHHHHHTT-CHHHHHHHHT
T ss_pred HHHHHHHHc----------CCCCCcH----HHHHHHHHHcCC-CHHHHHHHHH
Confidence 999988752 22233 2 224778887654 5555555554
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=92.10 Aligned_cols=182 Identities=13% Similarity=0.019 Sum_probs=111.2
Q ss_pred ChHHHHHHhcCCcEEEE----ecCCccccc-chH---HHH-HHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHH
Q psy4165 1 MFAKKLAHHSGMDYAIM----TGGDVAPMG-SSG---VTA-IHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v----~~~~l~~~~-g~~---e~~-l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+||+++|+.++..++.. ++..+.... .+. +.. -...+..| . ++|+||||+|.+.+ ...
T Consensus 342 ~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~-~gil~IDEid~l~~---------~~q 408 (595)
T 3f9v_A 342 QMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---D-GGIAVIDEIDKMRD---------EDR 408 (595)
T ss_dssp HHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---S-SSEECCTTTTCCCS---------HHH
T ss_pred HHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---C-CCcEEeehhhhCCH---------hHh
Confidence 47889998888766542 222332211 000 000 00112222 2 68999999999832 222
Q ss_pred HHHHHHHHHhcc-------------CCCCeEEEEecCCcc-------------cccHHHhccccc-EEEeCCCCHHHHHH
Q psy4165 72 ATLNAFLYRTGE-------------QSDKFMLVLASNTPQ-------------QFDWAVNDRLDE-MVEFPLPTLNERER 124 (242)
Q Consensus 72 ~~l~~lL~~l~~-------------~~~~v~vI~tTn~~~-------------~ld~al~~Rfd~-~i~~~~P~~~~R~~ 124 (242)
+.|+..|+. .+.++.||+|||.+. .|++++++|||. .+..+.|+.+ ...
T Consensus 409 ---~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~ 484 (595)
T 3f9v_A 409 ---VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRE 484 (595)
T ss_dssp ---HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHH
T ss_pred ---hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHH
Confidence 344444431 134678999999987 899999999984 5556677878 888
Q ss_pred HHHHHHhccccchh---hhcc-----------c-ccccCCCChhHhHHHHHHh--------------CCCCCHHHHHHHH
Q psy4165 125 LVRLYFDKFVLQPA---AQGK-----------R-RLKVAPFDYTSLCSKIAHV--------------TEGLSGREIAKLG 175 (242)
Q Consensus 125 Il~~~l~~~~~~~~---~~~~-----------~-~~~~~~~d~~~~l~~la~~--------------t~g~s~adi~~lv 175 (242)
|.++.+........ .+.. . ...+++-. .+.|.+. .-+.|++.+.+++
T Consensus 485 i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea----~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~li 560 (595)
T 3f9v_A 485 LANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEA----KNLITDFFVEMRKKSSETPDSPILITPRQLEALI 560 (595)
T ss_dssp HHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCT----HHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHH
T ss_pred HHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHHHHhhccCCCccccccHHHHHHHH
Confidence 88888764321000 0000 0 00111111 1334443 3578999999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 176 VAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
+.|++.+.......++.+|+.+|+.-..
T Consensus 561 rla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 561 RISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 9888888878888999999999987554
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-08 Score=84.01 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=91.7
Q ss_pred ChHHHHHHhc---CCcEEEEecCCccccc------ch-------HHHHHHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMG------SS-------GVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~------g~-------~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|++|++.+ +.||+.++|+.+.... |. ........|..|. +++|||||||.+..
T Consensus 40 ~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l~~----- 110 (304)
T 1ojl_A 40 LVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDISP----- 110 (304)
T ss_dssp HHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT----TSEEEEESCTTCCH-----
T ss_pred HHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC----CCEEEEeccccCCH-----
Confidence 4799999965 6799999998874210 00 0001123344443 58999999999942
Q ss_pred ccchHHHHHHHHHHHHhccC-----------CCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCC--HHHHH
Q psy4165 65 TISESLRATLNAFLYRTGEQ-----------SDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPT--LNERE 123 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~~~-----------~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~--~~~R~ 123 (242)
.. ...|+..++.. ...+.+|+|||.. ..+++.|..||. ..|++|+.. .++..
T Consensus 111 ----~~---q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~ 183 (304)
T 1ojl_A 111 ----LM---QVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIP 183 (304)
T ss_dssp ----HH---HHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHH
T ss_pred ----HH---HHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHH
Confidence 22 23344444321 2358899999975 235666777775 334455444 45556
Q ss_pred HHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHH
Q psy4165 124 RLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMV 195 (242)
Q Consensus 124 ~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~ 195 (242)
.++++++.++.... +.....++ ...++.+....-.-+.++|++++. .++.......++.+++
T Consensus 184 ~l~~~~l~~~~~~~------~~~~~~~s-~~a~~~L~~~~wpGnvReL~~~l~---~~~~~~~~~~i~~~~l 245 (304)
T 1ojl_A 184 LLADHFLRRFAERN------RKVVKGFT-PQAMDLLIHYDWPGNIRELENAIE---RAVVLLTGEYISEREL 245 (304)
T ss_dssp HHHHHHHHHHHHHT------TCCCCCBC-HHHHHHHHHCCCSSHHHHHHHHHH---HHHHHCCSSSBCGGGS
T ss_pred HHHHHHHHHHHHHh------ccCccCCC-HHHHHHHHcCCCCCCHHHHHHHHH---HHHHhCCCCcccHHhh
Confidence 68888876542211 11111222 233455665541224556666665 3333333445555554
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-06 Score=76.90 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=90.1
Q ss_pred CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC---C--CCeEEEEecCCcc---ccc---HHHhcccccEEE
Q psy4165 45 KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ---S--DKFMLVLASNTPQ---QFD---WAVNDRLDEMVE 113 (242)
Q Consensus 45 ~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~---~--~~v~vI~tTn~~~---~ld---~al~~Rfd~~i~ 113 (242)
+|.||+|||+|.+...+.. . ...+..++..+... . .++.+|++||.++ .++ +.+.+||...++
T Consensus 138 ~~~llvlDe~~~l~~~~~~---~---~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 211 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI---A---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH 211 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS---C---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred CeEEEEEeCHHHHhhccCc---c---hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence 3899999999999643211 1 12333344333321 3 6788999988665 445 667778877799
Q ss_pred eCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCC------CCCHHHHHHHHHHHHHHHhhhcC
Q psy4165 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTE------GLSGREIAKLGVAWQASAYASED 187 (242)
Q Consensus 114 ~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~------g~s~adi~~lv~~a~~~~~~~~~ 187 (242)
+++++.++..++++..+..... ...++ ...+..+++.+. | .+..+..++..+...+.....
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~-----------~~~~~-~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~ 278 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLR-----------DTVWE-PRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGR 278 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBC-----------TTSCC-HHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCCHHHHHHHHHHHHHhcCC-----------CCCCC-hHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988764210 01122 334577888887 5 577788888744433333444
Q ss_pred CCccHHHHHHHHHHH
Q psy4165 188 GVLTEAMVMSKVEDS 202 (242)
Q Consensus 188 ~~~~~~~~~~a~~~~ 202 (242)
..++.+++..++...
T Consensus 279 ~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 279 DSLSEDLVRKAVSEN 293 (412)
T ss_dssp SSCCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHH
Confidence 567888877766543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=78.47 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred ChHHHHHHhcC---CcEEEEecCCccccc------chHHHH-------HHHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVAPMG------SSGVTA-------IHKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~~~~------g~~e~~-------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
++|+++++.++ .+|+.++++.+.... |..... ....|..+ . +.+|||||+|.+..
T Consensus 44 ~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~-~~~l~lDEi~~l~~----- 114 (265)
T 2bjv_A 44 LIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---D-GGTLFLDELATAPM----- 114 (265)
T ss_dssp HHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---T-TSEEEEESGGGSCH-----
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---C-CcEEEEechHhcCH-----
Confidence 37999999875 689999998873210 100000 01112222 2 68999999999842
Q ss_pred ccchHHHHHHHHHHHHhc--------cCCCCeEEEEecCCc-------ccccHHHhcccc-cEEEeCCCCH--HHHHHHH
Q psy4165 65 TISESLRATLNAFLYRTG--------EQSDKFMLVLASNTP-------QQFDWAVNDRLD-EMVEFPLPTL--NERERLV 126 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~--------~~~~~v~vI~tTn~~-------~~ld~al~~Rfd-~~i~~~~P~~--~~R~~Il 126 (242)
.....+..++..-. ....++.+|+|||.+ ..++++|..||+ ..|++|+.+. ++...++
T Consensus 115 ----~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 115 ----MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp ----HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHH
Confidence 22333333333210 012357899999974 246788999996 3455555443 5566677
Q ss_pred HHHHhc
Q psy4165 127 RLYFDK 132 (242)
Q Consensus 127 ~~~l~~ 132 (242)
+.++.+
T Consensus 191 ~~~l~~ 196 (265)
T 2bjv_A 191 EYFAIQ 196 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-07 Score=79.05 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=101.8
Q ss_pred hHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHHHHHHHh-C----CCcEEEEEecccccccccCCCccchHHH
Q psy4165 2 FAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKVFDWASS-S----RKGLVLFIDEADAFLRKRSSETISESLR 71 (242)
Q Consensus 2 lA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~-~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~ 71 (242)
+|+++|+.+.. .++.++.++..+ ...+++.+..... . .++.|++|||+|.+..
T Consensus 62 la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------ 124 (340)
T 1sxj_C 62 TIVALAREIYGKNYSNMVLELNASDDRG-----IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------ 124 (340)
T ss_dssp HHHHHHHHHHTTSHHHHEEEECTTSCCS-----HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------
T ss_pred HHHHHHHHHcCCCccceEEEEcCccccc-----HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------
Confidence 68888888643 467777665321 2233333332221 1 1268999999999842
Q ss_pred HHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 72 ATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 72 ~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
...+.|+..++..+....+|++||.+..+.+++.+|+. .+.|++++.++..+++...+... ++.++
T Consensus 125 ~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~----------~~~i~--- 190 (340)
T 1sxj_C 125 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHE----------KLKLS--- 190 (340)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTT----------TCCBC---
T ss_pred HHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHc----------CCCCC---
Confidence 23456666677667777888999999999999999997 88999999999999998888542 11111
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcC---CCccHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASED---GVLTEAMVMSK 198 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~---~~~~~~~~~~a 198 (242)
+..+..++..+ ++|++.+++..+........ ..++.+++...
T Consensus 191 -~~~~~~i~~~s----~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 191 -PNAEKALIELS----NGDMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp -HHHHHHHHHHH----TTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred -HHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 22345666654 44666655533333222221 15676666543
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=78.13 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=85.5
Q ss_pred hHHHHHHhc------CCcEEEEecCCcccccchHHHHHHHHHHHHHhCC---CcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHS------GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSR---KGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~------~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~---~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
+|+++|+.+ ..+++.+++++- .-+...++++++.+.... +..|++|||+|.+.. .
T Consensus 34 ~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~ 97 (305)
T 2gno_A 34 VSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------Q 97 (305)
T ss_dssp HHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------H
T ss_pred HHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH------------H
Confidence 578888864 346777776531 123445778888776431 247999999999932 3
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHH
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYF 130 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l 130 (242)
..+.||+.|++++..+++|++||.+..|.|++++| .++|++|+.++..+.++..+
T Consensus 98 a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 46789999988888889999999999999999999 89999999999999888875
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.5e-06 Score=72.91 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhcc----------CCCCeEEEEec----C
Q psy4165 30 VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGE----------QSDKFMLVLAS----N 95 (242)
Q Consensus 30 e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~----------~~~~v~vI~tT----n 95 (242)
+...+.....|.. ..|||+||||.++....+....-....+...||.-|+. ..++|++|+|. +
T Consensus 238 ~~~~~~ai~~ae~---~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 238 EELKQKAIDAVEQ---NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHHH---HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcc---CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 3344455555542 36999999999987644222111122355677777753 35679999887 3
Q ss_pred CcccccHHHhcccccEEEeCCCCHHHHHHHHH
Q psy4165 96 TPQQFDWAVNDRLDEMVEFPLPTLNERERLVR 127 (242)
Q Consensus 96 ~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~ 127 (242)
.|.++-|.|++||+..|+|+.++.++..+|+.
T Consensus 315 ~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 315 RPSDLIPELQGRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred ChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence 45556689999999999999999999999993
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=90.10 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=84.2
Q ss_pred ChH-HHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHh--------------CCCcEEEEEecccccccccCCCc
Q psy4165 1 MFA-KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASS--------------SRKGLVLFIDEADAFLRKRSSET 65 (242)
Q Consensus 1 llA-~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~--------------~~~p~Il~iDeiD~l~~~r~~~~ 65 (242)
|+| +++++..+.+++.++.+...+ ...+...+...-. ..+++||||||+|.-...+-+
T Consensus 1282 ~la~~~l~~~~~~~~~~infsa~ts-----~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg-- 1354 (2695)
T 4akg_A 1282 MIMNNALRNSSLYDVVGINFSKDTT-----TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG-- 1354 (2695)
T ss_dssp HHHHHHHHSCSSCEEEEEECCTTCC-----HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSS--
T ss_pred HHHHHHHhcCCCCceEEEEeecCCC-----HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccC--
Confidence 356 556666678888888776532 2344555543310 122589999999974433322
Q ss_pred cchHHHHHHHHHHHHh---ccCC------CCeEEEEecCCcc-----cccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 66 ISESLRATLNAFLYRT---GEQS------DKFMLVLASNTPQ-----QFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 66 ~~~~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~~-----~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
.......+.+++..- +... .++.+|||||+|. .|++++++|| ..++++.|+.+++..|+..++.
T Consensus 1355 -~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1355 -SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp -CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 233455666666431 1111 2489999999994 8999999999 6999999999999999999986
Q ss_pred c
Q psy4165 132 K 132 (242)
Q Consensus 132 ~ 132 (242)
.
T Consensus 1433 ~ 1433 (2695)
T 4akg_A 1433 A 1433 (2695)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.1e-07 Score=67.62 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=61.1
Q ss_pred ChHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
++|++|++.+ +.||+ ++++.+... ......|..+. +++|||||+|.+.. .. ...|
T Consensus 39 ~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~~~~~~a~----~g~l~ldei~~l~~---------~~---q~~L 96 (145)
T 3n70_A 39 TGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLNDFIALAQ----GGTLVLSHPEHLTR---------EQ---QYHL 96 (145)
T ss_dssp HHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHHHHHHHHT----TSCEEEECGGGSCH---------HH---HHHH
T ss_pred HHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhhcHHHHcC----CcEEEEcChHHCCH---------HH---HHHH
Confidence 4799999987 78999 999887543 23445566664 68999999999842 22 2344
Q ss_pred HHHhccCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCC
Q psy4165 78 LYRTGEQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPL 116 (242)
Q Consensus 78 L~~l~~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~ 116 (242)
+..|......+.+|+|||.+- .+.+.+..|+. ..|++|+
T Consensus 97 l~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 97 VQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred HHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 444555555678899998642 34455554432 2455554
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=65.37 Aligned_cols=94 Identities=9% Similarity=0.181 Sum_probs=60.6
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|+++++.++ +|+.++++.+.. .....+|..+. +.+|||||+|.+.. .....+..++..
T Consensus 42 ~lA~~i~~~~~-~~~~~~~~~~~~------~~~~~~~~~a~----~~~l~lDei~~l~~---------~~q~~Ll~~l~~ 101 (143)
T 3co5_A 42 TVARYFHKNGT-PWVSPARVEYLI------DMPMELLQKAE----GGVLYVGDIAQYSR---------NIQTGITFIIGK 101 (143)
T ss_dssp HHHGGGCCTTS-CEECCSSTTHHH------HCHHHHHHHTT----TSEEEEEECTTCCH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CeEEechhhCCh------HhhhhHHHhCC----CCeEEEeChHHCCH---------HHHHHHHHHHHh
Confidence 37889998888 999999987633 22455666554 68999999999843 222233333322
Q ss_pred hccCCCCeEEEEecCCc-cc----ccHHHhccc-ccEEEeCC
Q psy4165 81 TGEQSDKFMLVLASNTP-QQ----FDWAVNDRL-DEMVEFPL 116 (242)
Q Consensus 81 l~~~~~~v~vI~tTn~~-~~----ld~al~~Rf-d~~i~~~~ 116 (242)
. ...++.+|+|||.+ .. +++.+..|| ...|++|+
T Consensus 102 ~--~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 102 A--ERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp H--TTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred C--CCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 2 24557888888854 22 566667664 44667665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=72.63 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=84.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc----c--------------CCCCeEEEEecCCc--ccccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----E--------------QSDKFMLVLASNTP--QQFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----~--------------~~~~v~vI~tTn~~--~~ld~al~ 105 (242)
+.+|||||+|.+- ......+..+|..-. . .+..+.||+|||+. ..++++|+
T Consensus 202 ~gvL~LDEi~~l~---------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~ 272 (604)
T 3k1j_A 202 KGVLFIDEIATLS---------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALR 272 (604)
T ss_dssp TSEEEETTGGGSC---------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHH
T ss_pred CCEEEEechhhCC---------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHH
Confidence 7899999999982 223333333333210 0 01357899999987 78999999
Q ss_pred cccc---cEEEeCCC---CHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh---CCCC------CHHH
Q psy4165 106 DRLD---EMVEFPLP---TLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV---TEGL------SGRE 170 (242)
Q Consensus 106 ~Rfd---~~i~~~~P---~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~---t~g~------s~ad 170 (242)
+||+ ..++|+.. +.+....+++.+....... .....++ +..+..|.+. ..|- +.++
T Consensus 273 ~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~ls-~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 273 SRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD--------GKIPHFT-KEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH--------CSSCCBB-HHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred HHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc--------cCcccCC-HHHHHHHHHHHhhhhccccccccCHHH
Confidence 9997 45655432 4556666665554432110 0011222 2233444443 3563 7999
Q ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 171 IAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 171 i~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
+.++++.|.+.+.......++.+++.++++.
T Consensus 344 l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999996655555556668999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.7e-06 Score=83.10 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=72.4
Q ss_pred ChHHHHHHhcC---CcEEEEecCCcc------------ccc-ch----HHHHHHHHHHHHHhCCCcEEEEEecccccccc
Q psy4165 1 MFAKKLAHHSG---MDYAIMTGGDVA------------PMG-SS----GVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 1 llA~aiA~e~~---~~~~~v~~~~l~------------~~~-g~----~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
+||+++|.+.+ -|.++++..... ++| ++ +|+.++.+|..|+... ||+||+|++|+|++.
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGCCCH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHhcCcc
Confidence 57888888764 455555554432 333 67 8999999999999888 999999999999998
Q ss_pred cC---CCc--cchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccccHHH
Q psy4165 61 RS---SET--ISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV 104 (242)
Q Consensus 61 r~---~~~--~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~ld~al 104 (242)
+. ... ..+...++++++|.+|+ ....+|+|| +||+..+=..++
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~~~ 1225 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIGVM 1225 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTTCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccchhe
Confidence 43 211 12456678999999996 233456666 788765443333
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=65.95 Aligned_cols=141 Identities=14% Similarity=0.030 Sum_probs=84.0
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc---------cCCCCeEEEEecCCcc-----------cccHHHh
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG---------EQSDKFMLVLASNTPQ-----------QFDWAVN 105 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~---------~~~~~v~vI~tTn~~~-----------~ld~al~ 105 (242)
..|+|+|||+.+- . .....|+.-|+ ..+.++.||||+|... .|+++++
T Consensus 301 gGvl~lDEIn~~~---------~---~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 301 GGILAVDHLEGAP---------E---PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp TSEEEEECCTTCC---------H---HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred CCeeehHhhhhCC---------H---HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 4799999999983 2 23344555453 2245689999999875 8999999
Q ss_pred cccccEEE-eCCCCHHHH---------HHHHHHHHhccc-cchhhhcccccccCC--CChhHh-HHHH--H--H------
Q psy4165 106 DRLDEMVE-FPLPTLNER---------ERLVRLYFDKFV-LQPAAQGKRRLKVAP--FDYTSL-CSKI--A--H------ 161 (242)
Q Consensus 106 ~Rfd~~i~-~~~P~~~~R---------~~Il~~~l~~~~-~~~~~~~~~~~~~~~--~d~~~~-l~~l--a--~------ 161 (242)
+|||..+. ++.|+.+.- .+.++.|..... .. -...+++ .++-.. ...+ . .
T Consensus 369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~------~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~ 442 (506)
T 3f8t_A 369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREH------PAPELTEEARKRLEHWYETRREEVEERLGMGL 442 (506)
T ss_dssp TTCSEEEETTC--------------CCHHHHHHHHHHHHHHC------SCCEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcC------CCceeCHHHHHHHHHHHHHHhcCccccccccc
Confidence 99987554 455654432 122333332110 00 0111111 110000 0001 0 0
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 162 VTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 162 ~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..-|.|++.+..+++-|++.|....+..++.+|+..|+.-+..
T Consensus 443 ~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 443 PTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 2458999999999999999999899999999999999876643
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00027 Score=62.05 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=90.5
Q ss_pred hHHHHHHhcC---CcEEEEecCCcccccchHHHH---------------HHHHHHHHHhCCCcEEEEEecccccccccCC
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTA---------------IHKVFDWASSSRKGLVLFIDEADAFLRKRSS 63 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~---------------l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~ 63 (242)
+|++|....+ .||+.++|+.+.... .+.. -...|+.|. +.+||||||+.+-
T Consensus 176 lAr~ih~~s~r~~~~fv~v~~~~~~~~~--~~~elfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~~l~----- 244 (387)
T 1ny5_A 176 VARLIHKLSDRSKEPFVALNVASIPRDI--FEAELFGYEKGAFTGAVSSKEGFFELAD----GGTLFLDEIGELS----- 244 (387)
T ss_dssp HHHHHHHHSTTTTSCEEEEETTTSCHHH--HHHHHHCBCTTSSTTCCSCBCCHHHHTT----TSEEEEESGGGCC-----
T ss_pred HHHHHHHhcCCCCCCeEEEecCCCCHHH--HHHHhcCCCCCCCCCcccccCCceeeCC----CcEEEEcChhhCC-----
Confidence 6777877654 699999998873210 0000 112233332 5799999999993
Q ss_pred CccchHHHHHHHHHHHHh-----cc---CCCCeEEEEecCCc-------ccccHHHhccc-ccEEEeCCCC--HHHHHHH
Q psy4165 64 ETISESLRATLNAFLYRT-----GE---QSDKFMLVLASNTP-------QQFDWAVNDRL-DEMVEFPLPT--LNERERL 125 (242)
Q Consensus 64 ~~~~~~~~~~l~~lL~~l-----~~---~~~~v~vI~tTn~~-------~~ld~al~~Rf-d~~i~~~~P~--~~~R~~I 125 (242)
...+..+..+|..- +. ....+-+|+|||.. ..+.+.|.-|+ ...|++|+.. .++...+
T Consensus 245 ----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l 320 (387)
T 1ny5_A 245 ----LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPL 320 (387)
T ss_dssp ----HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHH
Confidence 33444455555431 11 11247799999863 12333334333 3345555542 3677778
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCC--HHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLS--GREIAKLGVAWQASAYASEDGVLTEAMVMSK 198 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s--~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a 198 (242)
+++++.++.... +.+...++ ...++.+... .|. .++|++++. .++.....+.++.+++-..
T Consensus 321 ~~~~l~~~~~~~------~~~~~~~~-~~a~~~l~~~--~wpGNvreL~~~i~---~~~~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 321 ANHFLKKFSRKY------AKEVEGFT-KSAQELLLSY--PWYGNVRELKNVIE---RAVLFSEGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHHHHHHT------TCCCCEEC-HHHHHHHHHS--CCTTHHHHHHHHHH---HHHHHCCSSEECHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCCCCCC-HHHHHHHHhC--CCCcHHHHHHHHHH---HHHHhCCCCcCcHHHCcHh
Confidence 888887642211 11111222 2233444444 343 347777775 3333334557888777543
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00069 Score=58.13 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=87.2
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecccc-cccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCC------ccccc
Q psy4165 32 AIHKVFDWASS---SRKGLVLFIDEADA-FLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNT------PQQFD 101 (242)
Q Consensus 32 ~l~~~f~~A~~---~~~p~Il~iDeiD~-l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~------~~~ld 101 (242)
.++++++.+.. .++.-|++|||+|. +.. ...+.|+..+++.+..+++|.+|+. ...+.
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~------------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~ 127 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNA------------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWF 127 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT------------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHH
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCCh------------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHH
Confidence 35556655543 23368999999988 621 1346677777765555566655544 34688
Q ss_pred HHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy4165 102 WAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS 181 (242)
Q Consensus 102 ~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~ 181 (242)
+++.+|.. .+++.+|+..+....++..+.+.+.. .+ ...++.+++.++| +.+++.+.+. +..
T Consensus 128 ~~i~sr~~-~~~~~~l~~~~l~~~l~~~~~~~g~~----------i~----~~a~~~l~~~~~g-dl~~~~~ele--kl~ 189 (343)
T 1jr3_D 128 TALANRSV-QVTCQTPEQAQLPRWVAARAKQLNLE----------LD----DAANQVLCYCYEG-NLLALAQALE--RLS 189 (343)
T ss_dssp HHHTTTCE-EEEECCCCTTHHHHHHHHHHHHTTCE----------EC----HHHHHHHHHSSTT-CHHHHHHHHH--HHH
T ss_pred HHHHhCce-EEEeeCCCHHHHHHHHHHHHHHcCCC----------CC----HHHHHHHHHHhch-HHHHHHHHHH--HHH
Confidence 88888885 89999999999999999888763222 11 2334667777653 4444444443 233
Q ss_pred HhhhcCCCccHHHHHHHHH
Q psy4165 182 AYASEDGVLTEAMVMSKVE 200 (242)
Q Consensus 182 ~~~~~~~~~~~~~~~~a~~ 200 (242)
.+. ..+.+|.+++...+.
T Consensus 190 l~~-~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 190 LLW-PDGKLTLPRVEQAVN 207 (343)
T ss_dssp HHC-TTCEECHHHHHHHHH
T ss_pred Hhc-CCCCCCHHHHHHHHh
Confidence 333 345788887766543
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.002 Score=68.81 Aligned_cols=110 Identities=9% Similarity=0.070 Sum_probs=81.1
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH--
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY-- 79 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~-- 79 (242)
+++++|+.+|.+++.++|++-.. ...+..+|..+... +++++|||++.+-+ ..-..+++.+.
T Consensus 661 ~vk~LA~~lg~~~v~~nc~e~ld-----~~~lg~~~~g~~~~--Gaw~~~DE~nr~~~---------evLs~l~~~l~~i 724 (2695)
T 4akg_A 661 TVKAFGQNLGRVVVVFNCDDSFD-----YQVLSRLLVGITQI--GAWGCFDEFNRLDE---------KVLSAVSANIQQI 724 (2695)
T ss_dssp HHHHHHHTTTCCCEEEETTSSCC-----HHHHHHHHHHHHHH--TCEEEEETTTSSCH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEECCCCCC-----hhHhhHHHHHHHhc--CCEeeehhhhhcCh---------HHHHHHHHHHHHH
Confidence 68999999999999999987543 35678888888766 59999999999732 33333333332
Q ss_pred --Hhcc-------------CCCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 80 --RTGE-------------QSDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 80 --~l~~-------------~~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
.+.. -.....|++|.| .-..|++++..|| +.|.+..||.+...+|+-.
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHH
Confidence 2211 122356777888 4567999999999 6899999999998888643
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00058 Score=59.58 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=66.7
Q ss_pred hHHHHHHhcCC--cEEEEecCCcccccchHHHHH---------------HHHHHHHHhCCCcEEEEEecccccccccCCC
Q psy4165 2 FAKKLAHHSGM--DYAIMTGGDVAPMGSSGVTAI---------------HKVFDWASSSRKGLVLFIDEADAFLRKRSSE 64 (242)
Q Consensus 2 lA~aiA~e~~~--~~~~v~~~~l~~~~g~~e~~l---------------~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~ 64 (242)
+|++|....+. +|+.++|+.+-... .+..+ ...|+.|. ...||||||+.+-
T Consensus 168 lAr~ih~~s~r~~~fv~vnc~~~~~~~--~~~~lfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~~l~------ 235 (368)
T 3dzd_A 168 VARLIHRYSGRKGAFVDLNCASIPQEL--AESELFGHEKGAFTGALTRKKGKLELAD----QGTLFLDEVGELD------ 235 (368)
T ss_dssp HHHHHHHHHCCCSCEEEEESSSSCTTT--HHHHHHEECSCSSSSCCCCEECHHHHTT----TSEEEEETGGGSC------
T ss_pred HHHHHHHhccccCCcEEEEcccCChHH--HHHHhcCccccccCCcccccCChHhhcC----CCeEEecChhhCC------
Confidence 67777776654 39999999874321 11111 11344332 4689999999993
Q ss_pred ccchHHHHHHHHHHHHhc-----c---CCCCeEEEEecCCcccccHHHh-ccc--------c-cEEEeCCCCH--HHHHH
Q psy4165 65 TISESLRATLNAFLYRTG-----E---QSDKFMLVLASNTPQQFDWAVN-DRL--------D-EMVEFPLPTL--NERER 124 (242)
Q Consensus 65 ~~~~~~~~~l~~lL~~l~-----~---~~~~v~vI~tTn~~~~ld~al~-~Rf--------d-~~i~~~~P~~--~~R~~ 124 (242)
...+..+..+|..=. . ..-.+-+|+|||. ++...+. |+| . ..|++|+... ++...
T Consensus 236 ---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~ 310 (368)
T 3dzd_A 236 ---QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVIL 310 (368)
T ss_dssp ---HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHH
T ss_pred ---HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHH
Confidence 334444444443311 0 0114668898884 3443333 444 2 2577776655 77788
Q ss_pred HHHHHHhcc
Q psy4165 125 LVRLYFDKF 133 (242)
Q Consensus 125 Il~~~l~~~ 133 (242)
++++++.+.
T Consensus 311 l~~~~l~~~ 319 (368)
T 3dzd_A 311 LAEYFLKKF 319 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00035 Score=55.73 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=51.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhc-cCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG-EQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNER 122 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~-~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R 122 (242)
++||+|||++.+++.+.... +. ..+|..+. ....++-+|.+|+.+..||.++++|++..+++++|....+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~--e~-----~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGS--KI-----PENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR 158 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTC--CC-----CHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCCE
T ss_pred ceEEEEEChhhhccCccccc--hh-----HHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCcc
Confidence 79999999999987653321 11 12455553 3344567788888899999999999999999998755444
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.002 Score=48.74 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=54.4
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
|++++++.+ |...++++..++... +.... |.+|+|||++.+... ....+-.++
T Consensus 52 L~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~-~~lLilDE~~~~~~~---------~~~~l~~li 107 (149)
T 2kjq_A 52 LLQAWVAQALEAGKNAAYIDAASMPLT--------------DAAFE-AEYLAVDQVEKLGNE---------EQALLFSIF 107 (149)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTTSCCC--------------GGGGG-CSEEEEESTTCCCSH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HHHhC-CCEEEEeCccccChH---------HHHHHHHHH
Confidence 678888876 777888888777543 01123 899999999886431 134455555
Q ss_pred HHhccCCCCeEEEEecC-Cccccc--HHHhcccccEEEeC
Q psy4165 79 YRTGEQSDKFMLVLASN-TPQQFD--WAVNDRLDEMVEFP 115 (242)
Q Consensus 79 ~~l~~~~~~v~vI~tTn-~~~~ld--~al~~Rfd~~i~~~ 115 (242)
..+.... +.++|.||| .|..+. +.+.+|+..-..+.
T Consensus 108 ~~~~~~g-~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 108 NRFRNSG-KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp HHHHHHT-CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred HHHHHcC-CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 5543222 222444555 455443 78888886555544
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00062 Score=58.30 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=54.3
Q ss_pred hHHHHHHhcCC--cEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 2 FAKKLAHHSGM--DYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 2 lA~aiA~e~~~--~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
||.++|.+.|. .|+.+...+..+.+ .+.+..+..+++...+. + +|+||+++.+..........+...+.+.++|
T Consensus 139 LAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL 215 (331)
T 2vhj_A 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLL 215 (331)
T ss_dssp HHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC-----------CCHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecccccccccccccccchHHHHHHHHH
Confidence 67778876554 46666323333322 45666777777777654 4 9999999999765433111111123344444
Q ss_pred HHhc--cCCCCeEEEEecCCcccccHHHh
Q psy4165 79 YRTG--EQSDKFMLVLASNTPQQFDWAVN 105 (242)
Q Consensus 79 ~~l~--~~~~~v~vI~tTn~~~~ld~al~ 105 (242)
..|. ....++.+|++|| +...|+++.
T Consensus 216 ~~L~~~~k~~gvtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 216 SDIGAMAASRGCVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp HHHHHHHHHHTCEEEEECC-CSSCSSSHH
T ss_pred HHHHHHHhhCCCEEEEEeC-CcccchhHH
Confidence 4442 1123467888888 566766653
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0095 Score=50.45 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCC-CcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc---------H
Q psy4165 33 IHKVFDWASSSR-KGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD---------W 102 (242)
Q Consensus 33 l~~~f~~A~~~~-~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld---------~ 102 (242)
+..++....... +|.+|+|||++.+.... +. .....+..+. +.. .++.+|+|++....+. .
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-~~----~~~~~l~~~~---~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~ 194 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLR-GV----NLLPALAYAY---DNL-KRIKFIMSGSEMGLLYDYLRVEDPES 194 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCT-TC----CCHHHHHHHH---HHC-TTEEEEEEESSHHHHHHHTTTTCTTS
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccC-ch----hHHHHHHHHH---HcC-CCeEEEEEcCchHHHHHHHhccCCCC
Confidence 455665555442 28999999999986521 11 1122333332 211 3566777766543222 2
Q ss_pred HHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 103 AVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 103 al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.+.+|+...+++++.+.++..++++..+...+.. .+ +. ..+...|.|+ |.-+..++.
T Consensus 195 ~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----------~~--~~----~~i~~~t~G~-P~~l~~~~~ 251 (357)
T 2fna_A 195 PLFGRAFSTVELKPFSREEAIEFLRRGFQEADID----------FK--DY----EVVYEKIGGI-PGWLTYFGF 251 (357)
T ss_dssp TTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC----------CC--CH----HHHHHHHCSC-HHHHHHHHH
T ss_pred ccccCccceeecCCCCHHHHHHHHHHHHHHcCCC----------CC--cH----HHHHHHhCCC-HHHHHHHHH
Confidence 2446777799999999999999999877542111 11 11 5788888775 445666554
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.035 Score=46.76 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=65.1
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc---------HHHhcccccEEEeCC
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD---------WAVNDRLDEMVEFPL 116 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld---------~al~~Rfd~~i~~~~ 116 (242)
|.+|+|||++.+...... ........+..++ +.. .++.+|.|++....+. ..+.+|+...+++++
T Consensus 129 ~~vlvlDe~~~~~~~~~~--~~~~~~~~L~~~~---~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~p 202 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSR--GGKELLALFAYAY---DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKP 202 (350)
T ss_dssp CEEEEEETGGGGGGBTTT--TTHHHHHHHHHHH---HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCC
T ss_pred CEEEEEeCHHHHhccCcc--chhhHHHHHHHHH---Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCC
Confidence 899999999998642110 0112223333332 222 3566666665432222 224467777999999
Q ss_pred CCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 117 PTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 117 P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
.+.++-.++++..+...+.. ++ ...+..+...|.|+ |.-+..++.
T Consensus 203 l~~~e~~~~l~~~~~~~~~~-------------~~-~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 203 FDKDTSVEFLKRGFREVNLD-------------VP-ENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CCHHHHHHHHHHHHHTTTCC-------------CC-HHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC-------------CC-HHHHHHHHHHhCCC-HHHHHHHHH
Confidence 99999999998877542111 11 23447788888875 445665553
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.039 Score=59.84 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=79.8
Q ss_pred hHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHh
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRT 81 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l 81 (242)
+++.+|+.+|.+++.++|++-.. ...+..+|.-+-.. ++..+|||++.+- ...-.++.+.+..+
T Consensus 620 t~k~La~~lgr~~~vfnC~~~~d-----~~~~g~i~~G~~~~--GaW~cfDEfNrl~---------~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 620 TVKALGSQLGRFVLVFCCDEGFD-----LQAMSRIFVGLCQC--GAWGCFDEFNRLE---------ERILSAVSQQIQTI 683 (3245)
T ss_dssp HHHHHHHHTTCCEEEEECSSCCC-----HHHHHHHHHHHHHH--TCEEEEETTTSSC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEeCCCCCC-----HHHHHHHHhhHhhc--CcEEEehhhhcCC---------HHHHHHHHHHHHHH
Confidence 58999999999999999987543 34577788877765 5999999999982 23333333333321
Q ss_pred ----c------cC--------CCCeEEEEecC----CcccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 82 ----G------EQ--------SDKFMLVLASN----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 82 ----~------~~--------~~~v~vI~tTn----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
. .. .....+++|.| .-..||++|..|| +.|.+..||.+...+|+-.
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 0 11 12456778887 3468999999999 5799999999998888644
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0079 Score=46.35 Aligned_cols=85 Identities=12% Similarity=-0.012 Sum_probs=45.8
Q ss_pred hHHHHHHhc----CCcEEEEecCCccccc-chH-HHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHH
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMG-SSG-VTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLN 75 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~-g~~-e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~ 75 (242)
|++++++.+ |..++.++..++...+ ... ......++.... +|.+|+|||++.... .......+.
T Consensus 54 L~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~-------~~~~~~~l~ 123 (180)
T 3ec2_A 54 LAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL---NSPVLVLDDLGSERL-------SDWQRELIS 123 (180)
T ss_dssp HHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH---TCSEEEEETCSSSCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc---CCCEEEEeCCCCCcC-------CHHHHHHHH
Confidence 678888775 6677777766554321 000 000111222222 389999999986421 233445556
Q ss_pred HHHHHhccCCCCeEEEEecCCcc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQ 98 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~ 98 (242)
.++..... .+..+|.|||.+.
T Consensus 124 ~ll~~~~~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 124 YIITYRYN--NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHH--TTCEEEEECCCCS
T ss_pred HHHHHHHH--cCCCEEEEcCCCh
Confidence 66655422 2346777887764
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.039 Score=59.81 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHH----H-h----------CCCcEEEEEecccccccccCCCccch
Q psy4165 4 KKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWA----S-S----------SRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 4 ~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A----~-~----------~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
.++++..+.+++.++.+.-. +...+...++.- + . ..+.+|+||||++--....- +..
T Consensus 1323 ~~L~~l~~~~~~~infS~~T-----ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~y---GtQ 1394 (3245)
T 3vkg_A 1323 STLRAFPDFEVVSLNFSSAT-----TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKY---GTQ 1394 (3245)
T ss_dssp HHGGGCTTEEEEEECCCTTC-----CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTT---SCC
T ss_pred HHHHhCCCCceEEEEeeCCC-----CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCcccc---ccc
Confidence 33444445667777766542 234455555421 1 0 12247999999985322211 123
Q ss_pred HHHHHHHHHHHHh---ccCC------CCeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhc
Q psy4165 69 SLRATLNAFLYRT---GEQS------DKFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDK 132 (242)
Q Consensus 69 ~~~~~l~~lL~~l---~~~~------~~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~ 132 (242)
..-..+.+++.+- +... .++.+|||.|.| ..|++++++||. .+.++.|+.++...|+..++..
T Consensus 1395 ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1395 RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 3556666666542 1111 247899999988 469999999997 6999999999999999887764
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=93.81 E-value=1.1 Score=38.63 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=65.9
Q ss_pred CcEEEEecCCcccccchHH-----HHHHHHHHHHHhC-CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCC
Q psy4165 12 MDYAIMTGGDVAPMGSSGV-----TAIHKVFDWASSS-RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQS 85 (242)
Q Consensus 12 ~~~~~v~~~~l~~~~g~~e-----~~l~~~f~~A~~~-~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~ 85 (242)
.+++.++.+.+.....+.. ..+..++..+... ..|.++++||+..++... .......+..++....+++
T Consensus 223 ~~~vv~dl~~l~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-----~~~~~~~l~~~~~~~Rk~g 297 (392)
T 4ag6_A 223 SDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-----TPQAIAFLRDTSKRIRKYN 297 (392)
T ss_dssp SSEEEEECGGGTTSCHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-----CTHHHHHHHHHHHHGGGGT
T ss_pred CCEEEEEchhhhcCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-----chHHHHHHHHHHHHhhhhC
Confidence 3567777666653210111 2344555555432 248999999999998531 1234455667776665444
Q ss_pred CCeEEEEecCCcccccH--------HHhcccccEEEeCCCCHHHHHHH
Q psy4165 86 DKFMLVLASNTPQQFDW--------AVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 86 ~~v~vI~tTn~~~~ld~--------al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
+.++.+|..+.++.. +++...+.+|.++.+. .++..+
T Consensus 298 --~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~-~~~~~~ 342 (392)
T 4ag6_A 298 --GSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGE-KDLEAI 342 (392)
T ss_dssp --CEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCH-HHHHHH
T ss_pred --eEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCCh-hhHHHH
Confidence 477888988888864 5667888888888764 344333
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.19 Score=52.62 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEeccccccccc---CCCcc-ch-HHHHHHHHHHHHhc--cCCCCeEEEEecCCcc
Q psy4165 28 SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKR---SSETI-SE-SLRATLNAFLYRTG--EQSDKFMLVLASNTPQ 98 (242)
Q Consensus 28 ~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r---~~~~~-~~-~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~ 98 (242)
.+|+.++.++..++..+ |++|+||+++.+.+.+ +..++ +. ...+.++++|.+|. .+..+ ++|.+||.+.
T Consensus 1489 ~~E~~l~~~~~lvr~~~-~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI~tNq~~ 1564 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIFINQIR 1564 (2050)
T ss_dssp SHHHHHHHHHHHHHHTC-CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEEEECEE
T ss_pred hHHHHHHHHHHHHhcCC-CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEEEEcccc
Confidence 56778888888888887 9999999999999853 22111 11 13467777777774 22334 4444555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.045 Score=42.71 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||+++++++ +.+++.++++++.... . -....+..++..... +.+|+|||++...
T Consensus 70 la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 70 LLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH---SSEEEEEEECCC-
T ss_pred HHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCc
Confidence 788898877 6788888877654321 0 001112333444332 5699999997764
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.56 Score=43.05 Aligned_cols=75 Identities=11% Similarity=0.242 Sum_probs=55.7
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcc--cccHHHhcccccEEEeCCCCHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPLPTLNERE 123 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~P~~~~R~ 123 (242)
+.+|+|||+..++.... ......+..++. ....-+|.+|++|.+|. .|+..++.-|...|.+...+..+-.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr 416 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSR 416 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHH
Confidence 47999999999875321 122222333321 24566899999999998 8999999889999999999999888
Q ss_pred HHHH
Q psy4165 124 RLVR 127 (242)
Q Consensus 124 ~Il~ 127 (242)
.||.
T Consensus 417 ~ILd 420 (574)
T 2iut_A 417 TILD 420 (574)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 8874
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=87.97 E-value=0.092 Score=45.77 Aligned_cols=98 Identities=6% Similarity=-0.104 Sum_probs=55.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEeccccccc-ccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR-KRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~-~r~~~~~~~~~~~~l~~lL~ 79 (242)
+|++++++.++..++.+..+.- .....+. .... .+++++||++.+.. .+.-..... .. ....+..
T Consensus 184 Tl~~~l~~~~~g~~~~~~~~~~-----~~~~~lg------~~~q-~~~~l~dd~~~~~~~~r~l~~~~~-~~-~~~~l~~ 249 (377)
T 1svm_A 184 TLAAALLELCGGKALNVNLPLD-----RLNFELG------VAID-QFLVVFEDVKGTGGESRDLPSGQG-IN-NLDNLRD 249 (377)
T ss_dssp HHHHHHHHHHCCEEECCSSCTT-----THHHHHG------GGTT-CSCEEETTCCCSTTTTTTCCCCSH-HH-HHHTTHH
T ss_pred HHHHHHHhhcCCcEEEEeccch-----hHHHHHH------Hhcc-hhHHHHHHHHHHHHHHhhccccCc-ch-HHHHHHH
Confidence 3788899888776665433221 0011111 1123 57889999999876 332211111 10 1122222
Q ss_pred HhccCCCCeEEEEecCCcccccHHHh--cccccEEEeCC
Q psy4165 80 RTGEQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPL 116 (242)
Q Consensus 80 ~l~~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~ 116 (242)
.++ +.+.|+++||+++.+ ++++ +|++..++..+
T Consensus 250 ~ld---G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 250 YLD---GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHH---CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhc---CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 232 346788899999999 5666 78887776654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=85.69 E-value=0.17 Score=42.63 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=29.2
Q ss_pred hHHHHHHhc----CCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 2 FAKKLAHHS----GMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 2 lA~aiA~e~----~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
||++||+++ |.+++.++++++.... + -....+..++..... +.+|+|||++...
T Consensus 168 La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~lLiiDdig~~~ 227 (308)
T 2qgz_A 168 LLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN---VPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT---SSEEEEETCCC--
T ss_pred HHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCC
Confidence 678888754 4788888877664311 0 001112233333332 5699999997653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=2.6 Score=38.15 Aligned_cols=74 Identities=14% Similarity=0.287 Sum_probs=53.7
Q ss_pred c-EEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcc--cccHHHhcccccEEEeCCCCHH
Q psy4165 46 G-LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQ--QFDWAVNDRLDEMVEFPLPTLN 120 (242)
Q Consensus 46 p-~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~--~ld~al~~Rfd~~i~~~~P~~~ 120 (242)
| .+|+|||...++... ..-+..++..+- ...-++.+|.+|.+|. .++..++.-|...|.|...+..
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred CcEEEEEeCHHHHHhhh---------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 5 489999998886421 112233443331 3344788999999987 6888888889999999999999
Q ss_pred HHHHHHHH
Q psy4165 121 ERERLVRL 128 (242)
Q Consensus 121 ~R~~Il~~ 128 (242)
+.+.|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 99888764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=83.53 E-value=6.4 Score=29.93 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred HhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecC--CcccccHHHhcccc-cEEEeCCC
Q psy4165 41 SSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASN--TPQQFDWAVNDRLD-EMVEFPLP 117 (242)
Q Consensus 41 ~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn--~~~~ld~al~~Rfd-~~i~~~~P 117 (242)
.... |.++++||++-...- .......+..+ +.. . +..+|++|. +...+-..+..|-+ ..+++...
T Consensus 96 l~~~-p~llilDEigp~~~l------d~~~~~~l~~~---l~~-~-~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~ 163 (178)
T 1ye8_A 96 KKDR-RKVIIIDEIGKMELF------SKKFRDLVRQI---MHD-P-NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp HHCT-TCEEEECCCSTTGGG------CHHHHHHHHHH---HTC-T-TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred cccC-CCEEEEeCCCCcccC------CHHHHHHHHHH---Hhc-C-CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCc
Confidence 3344 999999997644221 12233333333 333 2 333555553 33344445666643 46677666
Q ss_pred CH
Q psy4165 118 TL 119 (242)
Q Consensus 118 ~~ 119 (242)
+.
T Consensus 164 ~r 165 (178)
T 1ye8_A 164 NR 165 (178)
T ss_dssp TT
T ss_pred CH
Confidence 53
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 242 | ||||
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 3e-26 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-23 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 7e-12 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 1e-07 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 2e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 3e-04 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 3e-26
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTA--IHKVFDWASSSRKGLVLFIDEADAFL 58
+ AK +A + + + ++G D M GV A + +F+ A + ++FIDE DA
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPC-IIFIDEIDAVG 117
Query: 59 RKRSSETIS--ESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMV 112
R+R + + TLN L E ++ +++ A+N P D A+ R D V
Sbjct: 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIA 172
LP + RE++++++ + L P + IA T G SG ++A
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDID---------------AAIIARGTPGFSGADLA 222
Query: 173 KL 174
L
Sbjct: 223 NL 224
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 92.6 bits (230), Expect = 2e-23
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
A+ +A + + + +G D M G + +F+ A ++FIDE DA R
Sbjct: 57 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC-IVFIDEIDAVGR 115
Query: 60 KRSSETISES--LRATLNAFLYR--TGEQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
KR S + TLN L E+ +++ A+N P D A+ R D +
Sbjct: 116 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 175
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
P + RE+++R++ + P + +A T G G ++
Sbjct: 176 IDAPDVKGREQILRIH---------------ARGKPLAEDVDLALLAKRTPGFVGADLEN 220
Query: 174 L 174
L
Sbjct: 221 L 221
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.4 bits (148), Expect = 7e-12
Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 27/217 (12%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSS-GVTAIHKVFDWASSSRKGLVLFIDEADAFLR 59
+ AK +A+ ++ + G ++ M + ++FD A + VLF DE D+ +
Sbjct: 56 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC-VLFFDELDSIAK 114
Query: 60 KRSSET--ISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQFDWAV--NDRLDEMVE 113
R + +N L ++ A+N P D A+ RLD+++
Sbjct: 115 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 174
Query: 114 FPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAK 173
PLP R +++ K P +A +T G SG ++ +
Sbjct: 175 IPLPDEKSRVAILKANLRKS---------------PVAKDVDLEFLAKMTNGFSGADLTE 219
Query: 174 LGVAWQASAYASEDGVLTEAMVMSKVEDSIRAHKMKV 210
+ +A A + + E+ + + E M+V
Sbjct: 220 ICQ--RACKLAIRESI--ESEIRRERERQTNPSAMEV 252
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 49.3 bits (117), Expect = 1e-07
Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 13/148 (8%)
Query: 1 MFAKKLAHHSGMD--YAIMTGGD-VAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAF 57
L G YA + G+ ++ + + + + V+ ID
Sbjct: 138 PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM---LQHRVIVIDSLKNV 194
Query: 58 LRKRSSETISESLRATLNAFLY-RTGEQSDKFMLVLASNTPQQFDWAVN------DRLDE 110
+ T S + L + + +V+AS P D + R +
Sbjct: 195 IGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNS 254
Query: 111 MVEFPLPTLNERERLVRLYFDKFVLQPA 138
++ +++ +
Sbjct: 255 TSLVISTDVDGEWQVLTRTGEGLQRLTH 282
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 22/209 (10%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRK 60
+ A+ +A+ +G + ++ G ++ + + + + ++FIDE DA K
Sbjct: 53 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 112
Query: 61 RSSETISESLRATLNAFL--YRTGEQSDKFMLVLASNTPQQFDW--AVNDRLDEMVEFPL 116
R +T E R ++ L +Q +++ A+N P D R D V+ +
Sbjct: 113 R-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 171
Query: 117 PTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176
P R +++++ ++A+ T G G ++A L
Sbjct: 172 PDATGRLEILQIHTKNM---------------KLADDVDLEQVANETHGHVGADLAALCS 216
Query: 177 --AWQASAYASEDGVLTEAMVMSKVEDSI 203
A QA + L + + ++V +S+
Sbjct: 217 EAALQAIRKKMDLIDLEDETIDAEVMNSL 245
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/185 (10%), Positives = 42/185 (22%), Gaps = 38/185 (20%)
Query: 1 MFAKKLAHHSGMDYAIMTGGDVAPMG--SSGVTAIHKVFDWASSSRKGL-----VLFIDE 53
A L G + + VF+ + I+
Sbjct: 169 TLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 228
Query: 54 ADAFLRKRSSETIS--ESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVND--RLD 109
D E ++ ++ N + R
Sbjct: 229 LDNLRDYLDGSVKVNLEKKHLNKRTQIFP--------PGIVTMNE---YSVPKTLQARFV 277
Query: 110 EMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGR 169
+ ++F + L R +F+L+ KR ++ + + +
Sbjct: 278 KQIDFRPKD-YLKHCLERS---EFLLE-----KRIIQSG-------IALLLMLIWYRPVA 321
Query: 170 EIAKL 174
E A+
Sbjct: 322 EFAQS 326
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 242 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.97 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.71 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.56 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.4 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.25 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.23 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.2 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.11 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.05 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 98.93 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 98.91 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.9 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 98.81 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.8 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 98.69 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 98.56 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.43 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.37 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 98.25 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.21 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 98.08 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.99 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 97.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.92 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.14 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 88.44 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 85.48 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 80.52 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 80.29 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-38 Score=260.58 Aligned_cols=189 Identities=24% Similarity=0.358 Sum_probs=165.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCcc--chHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETI--SESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~--~~~~~~~l~~l 77 (242)
++|++||+++|+|++.++++++.++| |++++.++++|+.|+.++ ||||||||+|.+++.|++... .....+++++|
T Consensus 60 ~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~-P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~l 138 (256)
T d1lv7a_ 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 138 (256)
T ss_dssp HHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcC-CEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHH
Confidence 48999999999999999999999876 999999999999999888 999999999999998865542 24566789999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+ ..+.+|+||||||+|+.||++++ +|||.+|+|++|+.++|.+||+.++.+.+.. .++++
T Consensus 139 l~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-----------~~~~~- 206 (256)
T d1lv7a_ 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-----------PDIDA- 206 (256)
T ss_dssp HHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----------TTCCH-
T ss_pred HHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-----------cccCH-
Confidence 99997 45567999999999999999999 5999999999999999999999999875332 34565
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+++.|+|||++||.++|++|...+.......++.+++++|+++++.+
T Consensus 207 ---~~la~~t~G~s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al~rv~~g 255 (256)
T d1lv7a_ 207 ---AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (256)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred ---HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 8999999999999999999977655666666789999999999988643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-36 Score=253.05 Aligned_cols=183 Identities=23% Similarity=0.317 Sum_probs=156.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||++||+++|++++.++++++.++| |++++.++++|..|+.++ ||||||||+|.++++|+... ......+++++|
T Consensus 57 ~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~-p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~l 135 (247)
T d1ixza_ 57 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 135 (247)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcC-CEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHH
Confidence 48999999999999999999999876 999999999999999888 99999999999999876543 234567889999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|.+|+ ..+.+|+||+|||+|+.||++++ +|||.+|+|++|+.++|.+||+.++.+.+. ..++++
T Consensus 136 l~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~-----------~~~~~~- 203 (247)
T d1ixza_ 136 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-----------AEDVDL- 203 (247)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-----------CTTCCH-
T ss_pred HHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCC-----------ccccCH-
Confidence 99997 44567999999999999999999 699999999999999999999999986432 234555
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+.+|+.|+||||+||+++|+.|...+...+...++++|+++|+
T Consensus 204 ---~~la~~t~g~s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 204 ---ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp ---HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence 8999999999999999999977666666667799999999885
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-34 Score=242.55 Aligned_cols=183 Identities=21% Similarity=0.321 Sum_probs=154.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLY 79 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~ 79 (242)
++|+++|++++.+++.++++++.+.+ |+++..++.+|..|+.++ ||||||||+|.++++|.+.. ++....+++.++.
T Consensus 53 ~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~-p~il~iDeid~l~~~r~~~~-~~~~~~~~~~~~~ 130 (258)
T d1e32a2 53 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLT 130 (258)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTC-SEEEEESSGGGTCCHHHHCC-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcC-CeEEEehhhhhhccCCCCCC-CchHHHHHHHhcc
Confidence 47999999999999999999999876 999999999999999888 99999999999999887654 4445677888888
Q ss_pred Hhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHh
Q psy4165 80 RTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSL 155 (242)
Q Consensus 80 ~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (242)
.++ ....+|+||+|||+|+.||++++ ||||.+|+|++|+.++|.+||+.++++..+. .++++
T Consensus 131 ~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-----------~~~~~--- 196 (258)
T d1e32a2 131 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----------DDVDL--- 196 (258)
T ss_dssp HHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-----------TTCCH---
T ss_pred ccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-----------cccch---
Confidence 774 55667999999999999999999 5999999999999999999999999864332 34565
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc-----------------CCCccHHHHHHHHH
Q psy4165 156 CSKIAHVTEGLSGREIAKLGVAWQASAYASE-----------------DGVLTEAMVMSKVE 200 (242)
Q Consensus 156 l~~la~~t~g~s~adi~~lv~~a~~~~~~~~-----------------~~~~~~~~~~~a~~ 200 (242)
+.||++|+||||+||+++|++|...+.... ...++++||+.|+.
T Consensus 197 -~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~ 257 (258)
T d1e32a2 197 -EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 257 (258)
T ss_dssp -HHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred -hhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhC
Confidence 899999999999999999997654443221 12478888888874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.9e-32 Score=227.13 Aligned_cols=166 Identities=22% Similarity=0.368 Sum_probs=140.3
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc--cchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET--ISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~--~~~~~~~~l~~l 77 (242)
+||+++|+++|+||+.++++++.+.+ |+++..++.+|..|+.++ ||||||||+|.++..|+... ......++++.|
T Consensus 56 ~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~-p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~l 134 (265)
T d1r7ra3 56 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 134 (265)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTC-SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcC-CcceeHHhhhhccccCCCcCCCCcHHHHHHHHHH
Confidence 48999999999999999999998866 999999999999999988 99999999999999875433 234456788999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccccHHHh--cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChh
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQFDWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYT 153 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~ld~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~ 153 (242)
|++|+ ...++|+||||||+++.||++++ |||+.+|+|++|+.++|.+||+.++++... ..++++
T Consensus 135 l~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~-----------~~~~~l- 202 (265)
T d1r7ra3 135 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-----------AKDVDL- 202 (265)
T ss_dssp HHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC---------------CCCC-
T ss_pred HHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCc-----------hhhhhH-
Confidence 99996 34556999999999999999998 699999999999999999999999976322 245676
Q ss_pred HhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 154 SLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 154 ~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
+.|+++|+|||++||.++|+.|...+
T Consensus 203 ---~~la~~t~g~s~~di~~lv~~A~~~A 228 (265)
T d1r7ra3 203 ---EFLAKMTNGFSGADLTEICQRACKLA 228 (265)
T ss_dssp ---HHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred ---HHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999654443
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.88 E-value=5.1e-25 Score=187.40 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=103.6
Q ss_pred ChHHHHHHhcC--CcEEEEecCCccccc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHH
Q psy4165 1 MFAKKLAHHSG--MDYAIMTGGDVAPMG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAF 77 (242)
Q Consensus 1 llA~aiA~e~~--~~~~~v~~~~l~~~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~l 77 (242)
+||+++|.++| ++|+.++++++.++| |+++++++++|+.|+. ||||||||||.+.++|+.+..++...+++++|
T Consensus 138 ~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~---~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~l 214 (321)
T d1w44a_ 138 PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ---HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDL 214 (321)
T ss_dssp HHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH---CSEEEEECCTTTC-----------CCHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh---ccEEEeehhhhhccccccCCCCCcchhhhhhh
Confidence 58999999987 789999999999987 9999999999999984 79999999999999997665555556899999
Q ss_pred HHHhc--cCCCCeEEEEecCCcccc----cHHHh--cccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 78 LYRTG--EQSDKFMLVLASNTPQQF----DWAVN--DRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 78 L~~l~--~~~~~v~vI~tTn~~~~l----d~al~--~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
|++|| ....+|+||||||+ +.+ |+++. +|||+.+++++|+.++|.+||+.+...+
T Consensus 215 L~e~dg~~~~~~v~viaatN~-~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~ 277 (321)
T d1w44a_ 215 LSDIGAMAASRGCVVIASLNP-TSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGL 277 (321)
T ss_dssp HHHHHHHHHHHTCEEEEECCC-CCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEEECBTTC
T ss_pred hhhccccccCCCeEEEEeCCC-cccccchhhhhhccCcccceeecCCCChHHHHHHHHHhccCc
Confidence 99997 44457999999995 444 54445 8999999999999999999998887654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.86 E-value=7.9e-22 Score=162.77 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=113.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL 78 (242)
++|++||+++|+||+.++++++..++ + ...+.++++|+.|+.++ ||||||||||.+++.+..+... .+.++++|+
T Consensus 55 ~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~-p~il~iDEid~l~~~~~~~~~~--~~~~~~~ll 131 (246)
T d1d2na_ 55 ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ-LSCVVVDDIERLLDYVPIGPRF--SNLVLQALL 131 (246)
T ss_dssp HHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS-EEEEEECCHHHHTTCBTTTTBC--CHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcc-cceeehhhhhhHhhhcccccch--hHHHHHHHH
Confidence 48999999999999999998776544 4 33578999999999887 9999999999999876553322 346677888
Q ss_pred HHhc---cCCCCeEEEEecCCcccccHH-HhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhH
Q psy4165 79 YRTG---EQSDKFMLVLASNTPQQFDWA-VNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTS 154 (242)
Q Consensus 79 ~~l~---~~~~~v~vI~tTn~~~~ld~a-l~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 154 (242)
..++ ....+|+||||||+++.+|++ +.+||+..|++| +..+|.+|++.+-... ... ..
T Consensus 132 ~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P--~~~~r~~il~~l~~~~------------~~~----~~ 193 (246)
T d1d2na_ 132 VLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVP--NIATGEQLLEALELLG------------NFK----DK 193 (246)
T ss_dssp HHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECC--CEEEHHHHHHHHHHHT------------CSC----HH
T ss_pred HHhcCCCccccceeeeeccCChhhccchhhcCccceEEecC--CchhHHHHHHHHHhcc------------CCC----hH
Confidence 8876 334469999999999999987 449999999984 4445666665443211 111 33
Q ss_pred hHHHHHHhCCCCCHH-HHHHHHH
Q psy4165 155 LCSKIAHVTEGLSGR-EIAKLGV 176 (242)
Q Consensus 155 ~l~~la~~t~g~s~a-di~~lv~ 176 (242)
++..+++.+.|.+.. .++.++.
T Consensus 194 ~~~~i~~~~~g~~~~~~ik~ll~ 216 (246)
T d1d2na_ 194 ERTTIAQQVKGKKVWIGIKKLLM 216 (246)
T ss_dssp HHHHHHHHHTTSEEEECHHHHHH
T ss_pred HHHHHHHHcCCCccchhHHHHHH
Confidence 447888888885432 2555554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.71 E-value=1.6e-17 Score=141.04 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=108.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCcc--ccc-chHHHHHHHHHHHHHhC----CCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVA--PMG-SSGVTAIHKVFDWASSS----RKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~--~~~-g~~e~~l~~~f~~A~~~----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
+|||++|++++.+|+.++++.+. +++ |++++.++.+|..|... .+||||||||||.+.+.+.+....-....+
T Consensus 64 ~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv 143 (309)
T d1ofha_ 64 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV 143 (309)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred HHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHH
Confidence 48999999999999999999997 455 89999999999998653 128999999999999877665433334457
Q ss_pred HHHHHHHhcc----------CCCCeEEEEe----cCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHh
Q psy4165 74 LNAFLYRTGE----------QSDKFMLVLA----SNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFD 131 (242)
Q Consensus 74 l~~lL~~l~~----------~~~~v~vI~t----Tn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~ 131 (242)
+++||+.++. ...++++|++ +++++.++|++++||+..+.|++|+.+++.+|++.+..
T Consensus 144 ~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~ 215 (309)
T d1ofha_ 144 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHA 215 (309)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTT
T ss_pred HHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHHH
Confidence 8889988863 1335677776 78999999999999999999999999999999876543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=2e-13 Score=110.48 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=120.4
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHH--
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFL-- 78 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL-- 78 (242)
++|+++|++++++++.++++.... ...+..++... .+.+++||||+|.+.+... ..+...+
T Consensus 50 ~lA~~la~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~ide~~~~~~~~~---------~~l~~~~~~ 112 (238)
T d1in4a2 50 TLAHIIASELQTNIHVTSGPVLVK-----QGDMAAILTSL---ERGDVLFIDEIHRLNKAVE---------ELLYSAIED 112 (238)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCCS-----HHHHHHHHHHC---CTTCEEEEETGGGCCHHHH---------HHHHHHHHT
T ss_pred HHHHHHHhccCCCcccccCccccc-----HHHHHHHHHhh---ccCCchHHHHHHHhhhHHH---------hhcccceee
Confidence 489999999999999999877643 23444444432 2369999999999854321 1111111
Q ss_pred -------------HHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 79 -------------YRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 79 -------------~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
..+.....++++|++||++..+++++++||...+.+++|+.+++..+++.+.......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------- 183 (238)
T d1in4a2 113 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--------- 183 (238)
T ss_dssp SCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC---------
T ss_pred eeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccch---------
Confidence 1111234578999999999999999999999999999999999999999988763222
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.+ +..+..+++.+.| +++++.+++..+...+.....+.+|.+.+.++++.
T Consensus 184 -~~----~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~~~~~~~it~~~~~~al~~ 233 (238)
T d1in4a2 184 -IE----DAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 233 (238)
T ss_dssp -BC----HHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred -hh----HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Confidence 11 3345888888875 78888777775544455556668999999888864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=1.4e-11 Score=99.56 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=118.5
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYR 80 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~ 80 (242)
++|+++|+++++++..++++.+... +. ........ ...++|++|||+|.+.+. ....+...+..
T Consensus 50 tla~~la~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~--~~~~~i~~iDe~~~~~~~---------~~~~l~~~~e~ 113 (239)
T d1ixsb2 50 TLAHVIAHELGVNLRVTSGPAIEKP-GD----LAAILANS--LEEGDILFIDEIHRLSRQ---------AEEHLYPAMED 113 (239)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCCSH-HH----HHHHHHTT--CCTTCEEEEETGGGCCHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEeccCCccccc-hh----hHHHHHhh--ccCCCeeeeecccccchh---------HHHhhhhhhhh
Confidence 4899999999999999998876432 11 11112222 222689999999998532 22222222221
Q ss_pred h---------------ccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccc
Q psy4165 81 T---------------GEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 81 l---------------~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
. .....++++|++||++...+++.++|+...+.+..|+.+++.++++..+...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~--------- 184 (239)
T d1ixsb2 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--------- 184 (239)
T ss_dssp SEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCC---------
T ss_pred hhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCc---------
Confidence 0 0124467889999999999999999999999999999999999999988763222
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~ 201 (242)
++ ...++.+++.+.| +.++..++++.+...+.......+|.+++.+++..
T Consensus 185 ----~~-~~~l~~ia~~s~g-d~R~a~~~l~~~~~~a~~~~~~~It~~~~~~~l~~ 234 (239)
T d1ixsb2 185 ----IT-EEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 234 (239)
T ss_dssp ----BC-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHHTTSCCSCBCHHHHHHHHHH
T ss_pred ----cc-hHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhh
Confidence 12 3456889999987 67777777775544444455668999999888853
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.25 E-value=3.4e-11 Score=96.70 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=108.1
Q ss_pred ChHHHHHHhcC-----CcEEEEecCCcccccchHHHHHHHHHHHHH-----hCCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSG-----MDYAIMTGGDVAPMGSSGVTAIHKVFDWAS-----SSRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~-----~~~~~v~~~~l~~~~g~~e~~l~~~f~~A~-----~~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++|+++|++++ .+++++++++..+. ..++..+.... ....+.||++||+|.+...
T Consensus 60 tla~~iak~l~~~~~~~~~~e~n~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~---------- 124 (231)
T d1iqpa2 60 TAALALARELFGENWRHNFLELNASDERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---------- 124 (231)
T ss_dssp HHHHHHHHHHHGGGHHHHEEEEETTCHHHH-----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH----------
T ss_pred HHHHHHHHHHHhcccCCCeeEEecCcccch-----hHHHHHHHHHHhhhhccCCCceEEeehhhhhcchh----------
Confidence 47899999865 47888888775321 22222222221 1223799999999988532
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
....|+..++.....+.+|++||.+..+++++.+||. .+.+++|+..+...+++..+.+.++ ..+
T Consensus 125 --~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~e~i----------~i~-- 189 (231)
T d1iqpa2 125 --AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGL----------ELT-- 189 (231)
T ss_dssp --HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTC----------EEC--
T ss_pred --HHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc-cccccccchhhHHHHHHHHHHHhCC----------CCC--
Confidence 2345666677677788999999999999999999996 7999999999999999999876322 222
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
+..++.+++.+.| |++.+++..+.+. .....++.+++.
T Consensus 190 --~~~l~~I~~~~~g----diR~ai~~Lq~~~--~~~~~it~e~v~ 227 (231)
T d1iqpa2 190 --EEGLQAILYIAEG----DMRRAINILQAAA--ALDKKITDENVF 227 (231)
T ss_dssp --HHHHHHHHHHHTT----CHHHHHHHHHHHH--TTCSEECHHHHH
T ss_pred --HHHHHHHHHHcCC----CHHHHHHHHHHHH--HcCCCcCHHHHH
Confidence 3455889988765 5555554333332 234456666553
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.4e-10 Score=92.45 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhccc
Q psy4165 32 AIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRL 108 (242)
Q Consensus 32 ~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rf 108 (242)
.++.+++.+... .+..|++|||+|.+. ....+.|+..|++++.++.+|++||+++.+.+++++|+
T Consensus 99 ~ir~~~~~~~~~~~~~~~kviiIde~d~l~------------~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc 166 (239)
T d1njfa_ 99 DTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 166 (239)
T ss_dssp HHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHhccccCCCEEEEEECcccCC------------HHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhh
Confidence 455666555322 225799999999983 23456788888888888999999999999999999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4165 109 DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDG 188 (242)
Q Consensus 109 d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~ 188 (242)
. .+.|++|+.++-..++....... +.. ++ +..++.+++.+.| |++.+++..+. +.+...+
T Consensus 167 ~-~i~~~~~~~~~i~~~l~~i~~~e----------~~~---~~-~~~l~~i~~~s~G----d~R~ain~l~~-~~~~~~~ 226 (239)
T d1njfa_ 167 L-QFHLKALDVEQIRHQLEHILNEE----------HIA---HE-PRALQLLARAAEG----SLRDALSLTDQ-AIASGDG 226 (239)
T ss_dssp E-EEECCCCCHHHHHHHHHHHHHHH----------TCC---BC-HHHHHHHHHHTTT----CHHHHHHHHHH-HHHHTTT
T ss_pred c-ccccccCcHHHhhhHHHHHHhhh----------ccC---CC-HHHHHHHHHHcCC----CHHHHHHHHHH-HHHhCCC
Confidence 5 89999999999999888887652 222 22 3456888888765 55554442222 2334456
Q ss_pred CccHHHHHHHH
Q psy4165 189 VLTEAMVMSKV 199 (242)
Q Consensus 189 ~~~~~~~~~a~ 199 (242)
.++.+++.+.+
T Consensus 227 ~I~~~~v~~~l 237 (239)
T d1njfa_ 227 QVSTQAVSAML 237 (239)
T ss_dssp SBCHHHHHHHH
T ss_pred CcCHHHHHHHh
Confidence 78888887665
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=8.7e-11 Score=95.21 Aligned_cols=167 Identities=15% Similarity=0.176 Sum_probs=107.1
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccccchHHHHHHHHHH------------HH-HhCCCcEEEEEecccccccccCCCccc
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMGSSGVTAIHKVFD------------WA-SSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~g~~e~~l~~~f~------------~A-~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
++|+++|++++++++.++++++.+.. .....+...+. .. ....++.++++||+|.+.....
T Consensus 67 t~a~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~----- 140 (253)
T d1sxja2 67 TAAHLVAQELGYDILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----- 140 (253)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----
T ss_pred HHHHHHHHHHHhhhhccccccchhhH-HHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh-----
Confidence 47999999999999999998876532 00011111100 00 1112378999999999865321
Q ss_pred hHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhccccccc
Q psy4165 68 ESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKV 147 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~ 147 (242)
..+..++.........++++++++....+++ + +|+...|+|++|+.+++..+++..+.+ +++..
T Consensus 141 ----~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~-l-~~~~~~i~f~~~~~~~i~~~l~~i~~~----------e~i~i 204 (253)
T d1sxja2 141 ----GGVGQLAQFCRKTSTPLILICNERNLPKMRP-F-DRVCLDIQFRRPDANSIKSRLMTIAIR----------EKFKL 204 (253)
T ss_dssp ----THHHHHHHHHHHCSSCEEEEESCTTSSTTGG-G-TTTSEEEECCCCCHHHHHHHHHHHHHH----------HTCCC
T ss_pred ----hhhHHHhhhhccccccccccccccccccccc-c-cceeeeeeccccchhHHHHHHHHHHHH----------hCCCC
Confidence 1233444444444556777777777776764 4 555679999999999999999999875 23434
Q ss_pred CCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 148 APFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 148 ~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
++- .++.|++.+.| ||+.+++..++. ......++.+.+.+..
T Consensus 205 ~~~----~l~~i~~~s~G----DiR~ai~~L~~~--~~~~~~i~~~~~~~~~ 246 (253)
T d1sxja2 205 DPN----VIDRLIQTTRG----DIRQVINLLSTI--STTTKTINHENINEIS 246 (253)
T ss_dssp CTT----HHHHHHHHTTT----CHHHHHHHHTHH--HHHSSCCCTTHHHHHH
T ss_pred CHH----HHHHHHHhCCC----cHHHHHHHHHHH--HHcCCCCCHHHHHHHh
Confidence 443 34889998754 888888744433 3344566776665444
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.2e-10 Score=92.98 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=109.7
Q ss_pred ChHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHHHHHHHh-----CCCcEEEEEecccccccccCCCccchHH
Q psy4165 1 MFAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKVFDWASS-----SRKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 1 llA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~-----~~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
++|+++|++++. .++..+.++..+.. .....+..... ..+..||+|||+|.+..
T Consensus 50 tl~~~la~~l~~~~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~----------- 113 (227)
T d1sxjc2 50 STIVALAREIYGKNYSNMVLELNASDDRGID-----VVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------- 113 (227)
T ss_dssp HHHHHHHHHHHTTSHHHHEEEECTTSCCSHH-----HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------
T ss_pred HHHHHHHHHhhcCCCcceeEEecccccCCee-----eeecchhhccccccccCCCeEEEEEeccccchh-----------
Confidence 378999998764 35667766654321 11111111111 11257999999999842
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
...+.|+..|+.....+.++++||.+..+++++++|+. .+.|++|+.++...++...+... ++..+
T Consensus 114 -~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~-~i~~~~~~~~~i~~~l~~I~~~e----------~i~i~-- 179 (227)
T d1sxjc2 114 -AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHE----------KLKLS-- 179 (227)
T ss_dssp -HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTT----------TCCBC--
T ss_pred -hHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHh-hhccccccccccccccccccccc----------cccCC--
Confidence 23456677777667788999999999999999999985 88999999999999999988753 22222
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhh---hcCCCccHHHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYA---SEDGVLTEAMVMSKV 199 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~---~~~~~~~~~~~~~a~ 199 (242)
+..++.+++.+.| |++.+++..+..... .....++.+++.+++
T Consensus 180 --~~~l~~i~~~s~G----d~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~ 225 (227)
T d1sxjc2 180 --PNAEKALIELSNG----DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 225 (227)
T ss_dssp --HHHHHHHHHHHTT----CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred --HHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHh
Confidence 3445889998765 777766644433222 233578888887764
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.5e-09 Score=89.12 Aligned_cols=178 Identities=11% Similarity=0.079 Sum_probs=111.8
Q ss_pred cCCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 10 SGMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
.+..++.++.+.+.+ ++ |+-+..++.++..+.... ++|+||||++.+++..++.+++.. +..+|.-. -..+
T Consensus 73 ~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~-~iIlfiDeih~l~~~g~~~g~~~d----~a~~Lkp~-L~rg 146 (268)
T d1r6bx2 73 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVD----AANLIKPL-LSSG 146 (268)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSCHHH----HHHHHSSC-SSSC
T ss_pred ccceeEEeeechHhccCccchhHHHHHHHHHHHhhccC-CceEEecchHHHhcCCCCCCcccc----HHHHhhHH-HhCC
Confidence 456899999999985 45 999999999999998776 799999999999976544332222 23333322 1266
Q ss_pred CeEEEEecC-----CcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHH
Q psy4165 87 KFMLVLASN-----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAH 161 (242)
Q Consensus 87 ~v~vI~tTn-----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~ 161 (242)
.+-+||+|. ....-|++|.+||. .|.+..|+.++-.+|++.+...+... .++...+--+. .+-.++.
T Consensus 147 ~i~vIgatT~eey~~~~e~d~al~rrF~-~I~V~Eps~e~t~~IL~~~~~~~e~~------h~v~~~~~al~-~~v~ls~ 218 (268)
T d1r6bx2 147 KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH------HDVRYTAKAVR-AAVELAV 218 (268)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH------HTCCCCHHHHH-HHHHHHH
T ss_pred CCeEEEeCCHHHHHHHHhhcHHHHhhhc-ccccCCCCHHHHHHHHHHhhHHHhcc------CCEEeChHHHH-HHHHHHH
Confidence 788888775 33356899999997 99999999999999998876543211 12222221110 1122333
Q ss_pred h-C-CCCCHHHHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHH
Q psy4165 162 V-T-EGLSGREIAKLGVAWQASAYA----SEDGVLTEAMVMSKVED 201 (242)
Q Consensus 162 ~-t-~g~s~adi~~lv~~a~~~~~~----~~~~~~~~~~~~~a~~~ 201 (242)
+ . ..+-|.-.-.++.+|.+.+.. .....++.+++...+.+
T Consensus 219 ryi~~~~~PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~~ 264 (268)
T d1r6bx2 219 KYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 264 (268)
T ss_dssp HHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHhhccccCcccCCHHHHHHHHHH
Confidence 3 1 223454445577755444332 12336778887665544
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=4.3e-09 Score=83.74 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=110.1
Q ss_pred hHHHHHHhcCC-----cEEEEecCCcccccchHHHHHHHHHHHHHhC------CCcEEEEEecccccccccCCCccchHH
Q psy4165 2 FAKKLAHHSGM-----DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS------RKGLVLFIDEADAFLRKRSSETISESL 70 (242)
Q Consensus 2 lA~aiA~e~~~-----~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~------~~p~Il~iDeiD~l~~~r~~~~~~~~~ 70 (242)
+|+++|++++. .++.+++++..+ ...+...+...... .++.|++|||+|.+...
T Consensus 52 ~a~~la~~l~~~~~~~~~~~~n~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~---------- 116 (224)
T d1sxjb2 52 SVHCLAHELLGRSYADGVLELNASDDRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------- 116 (224)
T ss_dssp HHHHHHHHHHGGGHHHHEEEECTTSCCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH----------
T ss_pred hHHHHHHHHhccccccccccccccccCC-----ceehhhHHHHHHHhhccCCCcceEEEEEecccccchh----------
Confidence 68889988775 478888877543 22233333222111 12579999999998531
Q ss_pred HHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCC
Q psy4165 71 RATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPF 150 (242)
Q Consensus 71 ~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 150 (242)
..+.|+..++.......+|.+|+....+.+++++|+. .|.|++|+.++...++...+.+.+. ..+
T Consensus 117 --~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~-~i~~~~~~~~~i~~~l~~i~~~e~~----------~i~-- 181 (224)
T d1sxjb2 117 --AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDV----------KYT-- 181 (224)
T ss_dssp --HHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC----------CBC--
T ss_pred --HHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH-HhhhcccchhhhHHHHHHHHHhccc----------CCC--
Confidence 2345666677777788999999999999999999996 7999999999999999999876322 222
Q ss_pred ChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q psy4165 151 DYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKV 199 (242)
Q Consensus 151 d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~ 199 (242)
+..++.++..+. +|++.+++..+... ...+.++.+.+.+.+
T Consensus 182 --~~~l~~I~~~s~----Gd~R~ai~~Lq~~~--~~~~~i~~~~i~~~~ 222 (224)
T d1sxjb2 182 --NDGLEAIIFTAE----GDMRQAINNLQSTV--AGHGLVNADNVFKIV 222 (224)
T ss_dssp --HHHHHHHHHHHT----TCHHHHHHHHHHHH--HHHSSBCHHHHHHHH
T ss_pred --HHHHHHHHHHcC----CcHHHHHHHHHHHH--HcCCCcCHHHHHHHh
Confidence 334577888854 47777776444433 344577777765544
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.00 E-value=1.4e-08 Score=82.42 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=99.4
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhc--cCCCCeEEEEecCCcccc------cHHHh
Q psy4165 34 HKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG--EQSDKFMLVLASNTPQQF------DWAVN 105 (242)
Q Consensus 34 ~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~--~~~~~v~vI~tTn~~~~l------d~al~ 105 (242)
..++........+.++++||+|.+....... ......+..++..+. .....+.+|+.+|.++.. ++++.
T Consensus 121 ~~l~~~~~~~~~~~~~iide~d~l~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 197 (287)
T d1w5sa2 121 KALVDNLYVENHYLLVILDEFQSMLSSPRIA---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVE 197 (287)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSC---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhccCccccceeEEEEeccccccc---hhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchh
Confidence 3444444444447899999999997665442 223333344444432 233456667666655433 36667
Q ss_pred cccccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCC-----CHHHHHHHHHHHHH
Q psy4165 106 DRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGL-----SGREIAKLGVAWQA 180 (242)
Q Consensus 106 ~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~-----s~adi~~lv~~a~~ 180 (242)
+||...++|++|+.++..+|++..++.... ...++ +..++.+|+.+.++ .++...++++.|..
T Consensus 198 ~r~~~~i~f~~y~~~el~~Il~~r~~~~~~-----------~~~~~-~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~ 265 (287)
T d1w5sa2 198 SQIGFKLHLPAYKSRELYTILEQRAELGLR-----------DTVWE-PRHLELISDVYGEDKGGDGSARRAIVALKMACE 265 (287)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHHBC-----------TTSCC-HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred cccceeeeccCCcHHHHHHHHhhhHHHhhc-----------cCCCC-HHHHHHHHHHHhccccCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999988764211 11233 44567888876432 46666667776655
Q ss_pred HHhhhcCCCccHHHHHHHHHH
Q psy4165 181 SAYASEDGVLTEAMVMSKVED 201 (242)
Q Consensus 181 ~~~~~~~~~~~~~~~~~a~~~ 201 (242)
.+.......++.+++.+|+.+
T Consensus 266 ~A~~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 266 MAEAMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHhc
Confidence 555566679999999999864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=2.8e-08 Score=79.13 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=105.4
Q ss_pred ChHHHHHHhc------CCcEEEEecCCcccc--cchHHHHHHHHHHH-----------HHhCCCcEEEEEeccccccccc
Q psy4165 1 MFAKKLAHHS------GMDYAIMTGGDVAPM--GSSGVTAIHKVFDW-----------ASSSRKGLVLFIDEADAFLRKR 61 (242)
Q Consensus 1 llA~aiA~e~------~~~~~~v~~~~l~~~--~g~~e~~l~~~f~~-----------A~~~~~p~Il~iDeiD~l~~~r 61 (242)
++|+++|+++ ....+.++++..... ..+. +...... -....+..||+|||+|.+...
T Consensus 48 tl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~- 123 (237)
T d1sxjd2 48 STILALTKELYGPDLMKSRILELNASDERGISIVREK---VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD- 123 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH---HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-
T ss_pred HHHHHHHHHHcCCcccccchhheeccccccchHHHHH---HHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH-
Confidence 3788999885 456777776665432 1111 1111110 011112459999999998531
Q ss_pred CCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhccccchhhhc
Q psy4165 62 SSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKFVLQPAAQG 141 (242)
Q Consensus 62 ~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~ 141 (242)
..+.++..+........+|.+|+..+.+.+++++|| ..|.|++|+.++...+|+..+.+.
T Consensus 124 -----------~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e-------- 183 (237)
T d1sxjd2 124 -----------AQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQE-------- 183 (237)
T ss_dssp -----------HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTT--------
T ss_pred -----------HHHHHhhccccccccccccccccccccccccccchh-hhhccccccccccchhhhhhhhhh--------
Confidence 233445555556667788899999999999999999 589999999999999999988753
Q ss_pred ccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHH---Hh-hhcCCCccHHHHHHHH
Q psy4165 142 KRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQAS---AY-ASEDGVLTEAMVMSKV 199 (242)
Q Consensus 142 ~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~---~~-~~~~~~~~~~~~~~a~ 199 (242)
++.. + +..++.+++.+.| |++.+++..+.+ +. ......++.+++++.+
T Consensus 184 --~i~i---~-~~~l~~ia~~s~g----d~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~ 235 (237)
T d1sxjd2 184 --NVKC---D-DGVLERILDISAG----DLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 235 (237)
T ss_dssp --TCCC---C-HHHHHHHHHHTSS----CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred --cCcC---C-HHHHHHHHHHcCC----CHHHHHHHHHHHHHhchhcCCCCccCHHHHHHhh
Confidence 2222 2 4456889999765 555544432222 11 1223468888887654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.91 E-value=6.2e-08 Score=78.05 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=116.0
Q ss_pred ChHHHHHHhc----CCcEEEEecCCccc-----------------ccc-hHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q psy4165 1 MFAKKLAHHS----GMDYAIMTGGDVAP-----------------MGS-SGVTAIHKVFDWASSSRKGLVLFIDEADAFL 58 (242)
Q Consensus 1 llA~aiA~e~----~~~~~~v~~~~l~~-----------------~~g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~ 58 (242)
++|+++++.+ +..++.+++..... ..+ .....+..+.........+.++++|++|.+.
T Consensus 58 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 137 (276)
T d1fnna2 58 VTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA 137 (276)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC
T ss_pred HHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhh
Confidence 3678888875 45677776644321 111 1223344455555555447899999999884
Q ss_pred cccCCCccchHHHHHHHHHHHHh-ccCCCCeEEEEecCC---cccccHHHhccc-ccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 59 RKRSSETISESLRATLNAFLYRT-GEQSDKFMLVLASNT---PQQFDWAVNDRL-DEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 59 ~~r~~~~~~~~~~~~l~~lL~~l-~~~~~~v~vI~tTn~---~~~ld~al~~Rf-d~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
. ........++..+ .....++.+|+++|. .+.+++++.+|+ ...|+|++|+.+++.+|++..+...
T Consensus 138 ~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~ 208 (276)
T d1fnna2 138 P---------DILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 208 (276)
T ss_dssp H---------HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred h---------hhhhhHHHHHhccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHh
Confidence 3 2222233333322 234556788888887 456788888664 4579999999999999999988652
Q ss_pred ccchhhhcccccccCCCChhHhHHHHHHhCCC--------CCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q psy4165 134 VLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEG--------LSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSI 203 (242)
Q Consensus 134 ~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g--------~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 203 (242)
... ..++ +..++.+++.+.+ =+++.+.++|+.|...+.......++.+|+++|..++.
T Consensus 209 ~~~-----------~~~~-~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~~~ 274 (276)
T d1fnna2 209 LAE-----------GSYS-EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 274 (276)
T ss_dssp BCT-----------TSSC-HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred ccc-----------cccc-HHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 211 1122 4445667776521 14566677787666566666667999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.90 E-value=2.7e-10 Score=97.71 Aligned_cols=173 Identities=9% Similarity=-0.082 Sum_probs=102.2
Q ss_pred ChHHHHHHhcCCcEEEEecCCcccc-c-chHHHHHHHHHHHHHhC-----CCcEEEEEecccccccccCCCccchHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPM-G-SSGVTAIHKVFDWASSS-----RKGLVLFIDEADAFLRKRSSETISESLRAT 73 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~-~-g~~e~~l~~~f~~A~~~-----~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~ 73 (242)
++|+++|+.+|.+++.+++++..+. + +........+|..|... ..|+++++||+|.+...+.+.....
T Consensus 169 ~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~----- 243 (362)
T d1svma_ 169 TLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVN----- 243 (362)
T ss_dssp HHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEE-----
T ss_pred HHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhcccccCCcchhh-----
Confidence 4899999999999999999988663 2 44433333444444211 1266777777776643322211000
Q ss_pred HHHHHHHhc-cCCCC-----eEEEEecCCcccccHHHh-cccccEEEeCCCCHHHHH-HHHHHHHhccccchhhhccccc
Q psy4165 74 LNAFLYRTG-EQSDK-----FMLVLASNTPQQFDWAVN-DRLDEMVEFPLPTLNERE-RLVRLYFDKFVLQPAAQGKRRL 145 (242)
Q Consensus 74 l~~lL~~l~-~~~~~-----v~vI~tTn~~~~ld~al~-~Rfd~~i~~~~P~~~~R~-~Il~~~l~~~~~~~~~~~~~~~ 145 (242)
++ ..... ..+|+|||.++ ++.++ +||++.+++.+|+...|. +++..++++..+
T Consensus 244 -------~~~~~~~~~~~~~~p~i~ttN~~~--~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l---------- 304 (362)
T d1svma_ 244 -------LEKKHLNKRTQIFPPGIVTMNEYS--VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII---------- 304 (362)
T ss_dssp -------ECCSSSCCEEECCCCEEEEECSCC--CCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCT----------
T ss_pred -------hhhhhhchhhhccCCceeeccccc--ccccccccCceEEeecCCCcHHHHHHHHHHHhcccCC----------
Confidence 01 00111 13788999642 33333 899999999999877764 455555554221
Q ss_pred ccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Q psy4165 146 KVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASAYASEDGVLTEAMVMSKVEDSIR 204 (242)
Q Consensus 146 ~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~ 204 (242)
..+. +.++..+.|++++|++++++.+.......-...++...+.....++..
T Consensus 305 ---~~~~----~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~ 356 (362)
T d1svma_ 305 ---QSGI----ALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAM 356 (362)
T ss_dssp ---TCHH----HHHHHHHHHSCGGGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---CCCH----HHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHc
Confidence 1222 668888889999999999985543332222234555566555555443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.4e-09 Score=84.90 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=78.9
Q ss_pred cCCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCC
Q psy4165 10 SGMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSD 86 (242)
Q Consensus 10 ~~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~ 86 (242)
.+.+++.++.+.+.+ ++ |+-|..++.+++.+.....+.||||||++.+++..++.+ +.....++.-+| . .+
T Consensus 77 ~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g-~~d~~~~Lkp~L---~--rg 150 (195)
T d1jbka_ 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL---A--RG 150 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHH---H--TT
T ss_pred cCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCC-cccHHHHHHHHH---h--CC
Confidence 467899999999875 44 899999999999987665469999999999987654332 112223333333 2 56
Q ss_pred CeEEEEecCCc-----ccccHHHhcccccEEEeCCCCHHHHHHHH
Q psy4165 87 KFMLVLASNTP-----QQFDWAVNDRLDEMVEFPLPTLNERERLV 126 (242)
Q Consensus 87 ~v~vI~tTn~~-----~~ld~al~~Rfd~~i~~~~P~~~~R~~Il 126 (242)
.+-+|++|..- -.-|++|.+||. .|.+..|+.++-..||
T Consensus 151 ~l~~IgatT~eey~~~~e~d~aL~rrF~-~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 151 ELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CceEEecCCHHHHHHHHHcCHHHHhcCC-EeecCCCCHHHHHHHh
Confidence 67888877522 244999999997 9999999999887775
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.4e-08 Score=81.78 Aligned_cols=107 Identities=13% Similarity=0.212 Sum_probs=79.2
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCHHHHHHH
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTLNERERL 125 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~~~R~~I 125 (242)
..+++|||+|.+.. ...+.++..++....++.+|++||.++.+++++++||. .|+|++|+.++..++
T Consensus 132 ~~iiiide~d~l~~------------~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~ 198 (252)
T d1sxje2 132 YKCVIINEANSLTK------------DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL-LIRCPAPSDSEISTI 198 (252)
T ss_dssp CEEEEEECTTSSCH------------HHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE-EEECCCCCHHHHHHH
T ss_pred ceEEEecccccccc------------ccchhhhcccccccccccceeeeccccchhhhhhcchh-eeeecccchhhHHHH
Confidence 46999999999832 12344555566677788899999999999999999995 899999999999999
Q ss_pred HHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy4165 126 VRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGVAWQASA 182 (242)
Q Consensus 126 l~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~~a~~~~ 182 (242)
++..+.+. ++.... +..++.++..+.| |++.+++..+..+
T Consensus 199 l~~i~~~e----------~~~~~~---~~~l~~i~~~s~G----d~R~ai~~Lq~~~ 238 (252)
T d1sxje2 199 LSDVVTNE----------RIQLET---KDILKRIAQASNG----NLRVSLLMLESMA 238 (252)
T ss_dssp HHHHHHHH----------TCEECC---SHHHHHHHHHHTT----CHHHHHHHHTHHH
T ss_pred HHHHHHHc----------CCCCCc---HHHHHHHHHHcCC----cHHHHHHHHHHHH
Confidence 99888652 222222 2335778887664 7877776444433
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=3.5e-08 Score=84.88 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCcEEEEecCCccc--cc-chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCC
Q psy4165 11 GMDYAIMTGGDVAP--MG-SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDK 87 (242)
Q Consensus 11 ~~~~~~v~~~~l~~--~~-g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~ 87 (242)
+..++.++.+.+.. ++ |+.+..+..++..+.....++||||||++.+++..++.+ +...-.++.-+| . .+.
T Consensus 78 ~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g-~~d~a~~Lkp~L---~--rg~ 151 (387)
T d1qvra2 78 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPAL---A--RGE 151 (387)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH---H--TTC
T ss_pred CceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCC-cccHHHHHHHHH---h--CCC
Confidence 45799999999985 45 999999999999998775479999999999997654432 222333333333 2 456
Q ss_pred eEEEEecC-----CcccccHHHhcccccEEEeCCCCHHHHHHHHHHHHhcc
Q psy4165 88 FMLVLASN-----TPQQFDWAVNDRLDEMVEFPLPTLNERERLVRLYFDKF 133 (242)
Q Consensus 88 v~vI~tTn-----~~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~~l~~~ 133 (242)
+-+||+|. ... =|+||.+||. .|.++.|+.++-..||+.....+
T Consensus 152 ~~~I~~tT~~ey~~~e-~d~al~rrF~-~v~v~ep~~~~~~~il~~~~~~~ 200 (387)
T d1qvra2 152 LRLIGATTLDEYREIE-KDPALERRFQ-PVYVDEPTVEETISILRGLKEKY 200 (387)
T ss_dssp CCEEEEECHHHHHHHT-TCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHH
T ss_pred cceeeecCHHHHHHhc-ccHHHHHhcc-cccCCCCcHHHHHHHHHHHHHHH
Confidence 77888774 223 3888889998 89999999999999999887664
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=1.5e-07 Score=73.93 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCcccccHHHhcc
Q psy4165 31 TAIHKVFDWASS---SRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDR 107 (242)
Q Consensus 31 ~~l~~~f~~A~~---~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~R 107 (242)
..++++.+.+.. .++.-|++|||+|.+. ....+.||+.|++.+.++++|++||++..|.+.+++|
T Consensus 91 ~~ir~l~~~~~~~~~~~~~kviIide~d~l~------------~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SR 158 (207)
T d1a5ta2 91 DAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (207)
T ss_dssp HHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred chhhHHhhhhhhccccCccceEEechhhhhh------------hhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcce
Confidence 345555554432 2236799999999994 2356789999998889999999999999999999999
Q ss_pred cccEEEeCCCCHHHHHHHHHH
Q psy4165 108 LDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 108 fd~~i~~~~P~~~~R~~Il~~ 128 (242)
+ ..|.|++|+.++...+++.
T Consensus 159 c-~~i~~~~~~~~~~~~~L~~ 178 (207)
T d1a5ta2 159 C-RLHYLAPPPEQYAVTWLSR 178 (207)
T ss_dssp S-EEEECCCCCHHHHHHHHHH
T ss_pred e-EEEecCCCCHHHHHHHHHH
Confidence 9 5999999999988877754
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.56 E-value=9.1e-07 Score=69.75 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCccccc-c-hHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccchHHHHHHHH
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPMG-S-SGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISESLRATLNA 76 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~~-g-~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~ 76 (242)
|++|+|+++ +..+++++..++...+ . -.......+++.-+ . ..+|+|||+|.+.++ ......+-.
T Consensus 52 Ll~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~dll~iDDi~~i~~~-------~~~~~~lf~ 121 (213)
T d1l8qa2 52 LLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-S--VDLLLLDDVQFLSGK-------ERTQIEFFH 121 (213)
T ss_dssp HHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-T--CSEEEEECGGGGTTC-------HHHHHHHHH
T ss_pred HHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHh-h--ccchhhhhhhhhcCc-------hHHHHHHHH
Confidence 566777664 3456666665554322 1 01112333333333 2 479999999999653 233444555
Q ss_pred HHHHhccCCCCeEEEEecCCccccc---HHHhccc--ccEEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCC
Q psy4165 77 FLYRTGEQSDKFMLVLASNTPQQFD---WAVNDRL--DEMVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFD 151 (242)
Q Consensus 77 lL~~l~~~~~~v~vI~tTn~~~~ld---~al~~Rf--d~~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d 151 (242)
+++.+.. .++-++|.+...|..++ +.|.+|| ...+.++ |+.++|.++++.++...+ +.++
T Consensus 122 lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rg----------l~l~--- 186 (213)
T d1l8qa2 122 IFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFN----------LELR--- 186 (213)
T ss_dssp HHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTT----------CCCC---
T ss_pred HHHHHhh-ccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcC----------CCCC---
Confidence 5555532 34457777888887665 7777776 4566776 667899999999997643 3333
Q ss_pred hhHhHHHHHHhCCCCCHHHHHHHHHH
Q psy4165 152 YTSLCSKIAHVTEGLSGREIAKLGVA 177 (242)
Q Consensus 152 ~~~~l~~la~~t~g~s~adi~~lv~~ 177 (242)
+..++.|++++. +.+||..+++.
T Consensus 187 -~~v~~yl~~~~~--~~R~L~~~l~~ 209 (213)
T d1l8qa2 187 -KEVIDYLLENTK--NVREIEGKIKL 209 (213)
T ss_dssp -HHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC--cHHHHHHHHHH
Confidence 345588999975 68999888863
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.43 E-value=6.6e-07 Score=74.77 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=98.7
Q ss_pred hHHHHHHhc---CCcEEEEecCCcccc-----c-chHHH-----HHHHHHHHHHhCCCcEEEEEecccccccccCCCccc
Q psy4165 2 FAKKLAHHS---GMDYAIMTGGDVAPM-----G-SSGVT-----AIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETIS 67 (242)
Q Consensus 2 lA~aiA~e~---~~~~~~v~~~~l~~~-----~-g~~e~-----~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~ 67 (242)
+|++||..+ +.+++.++++++... . |.... .-..+.+..+++. -|||+|||||...
T Consensus 69 lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p-~~Vvl~DEieK~~--------- 138 (315)
T d1qvra3 69 LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP-YSVILFDEIEKAH--------- 138 (315)
T ss_dssp HHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS-SEEEEESSGGGSC---------
T ss_pred HHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCC-CcEEEEehHhhcC---------
Confidence 789999987 779999998877531 1 22111 1112333444443 5999999999973
Q ss_pred hHHHHHHHHHHHHhcc-----------CCCCeEEEEecCC--------------------------cccccHHHhccccc
Q psy4165 68 ESLRATLNAFLYRTGE-----------QSDKFMLVLASNT--------------------------PQQFDWAVNDRLDE 110 (242)
Q Consensus 68 ~~~~~~l~~lL~~l~~-----------~~~~v~vI~tTn~--------------------------~~~ld~al~~Rfd~ 110 (242)
.. +++.|+.-++. .-.+.++|+|||- ...+.|.+++|||.
T Consensus 139 ~~---v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ 215 (315)
T d1qvra3 139 PD---VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDE 215 (315)
T ss_dssp HH---HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSB
T ss_pred HH---HHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCe
Confidence 23 33444444421 1235899999995 35588999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 111 MVEFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 111 ~i~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
.+.|.+.+.++-.+|+...+.++....... ++.+ .++ +..++.|++. ...|-++.|++++.
T Consensus 216 Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~---~i~l-~i~-~~~~~~L~~~~y~~~~GAR~L~r~Ie 278 (315)
T d1qvra3 216 IVVFRPLTKEQIRQIVEIQLSYLRARLAEK---RISL-ELT-EAAKDFLAERGYDPVFGARPLRRVIQ 278 (315)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHHHHHHTT---TCEE-EEC-HHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred eeeccchhhhhhHHHHHHHHHHHHHHHHhc---cccc-ccc-HHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 999999999999999998887653222111 1111 111 2344667775 34455577777774
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=2.6e-06 Score=70.98 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=97.9
Q ss_pred hHHHHHHhcCCcEEEEecCCccc-------------ccchHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCccch
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP-------------MGSSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSETISE 68 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~-------------~~g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~~~~ 68 (242)
||++||..++.||+.++++.+.. +.|..+.. .+....+... .+|++|||+|... .
T Consensus 68 lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~--~l~~~~~~~~-~~vvl~DeieKa~---------~ 135 (315)
T d1r6bx3 68 VTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG--LLTDAVIKHP-HAVLLLDEIEKAH---------P 135 (315)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHHHCS-SEEEEEETGGGSC---------H
T ss_pred HHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCC--hhhHHHHhCc-cchhhhccccccc---------c
Confidence 79999999999999999887642 11212211 1222333343 6999999999973 3
Q ss_pred HHHHHHHHHHHHhc------c-----CCCCeEEEEecCCc-------------------------ccccHHHhcccccEE
Q psy4165 69 SLRATLNAFLYRTG------E-----QSDKFMLVLASNTP-------------------------QQFDWAVNDRLDEMV 112 (242)
Q Consensus 69 ~~~~~l~~lL~~l~------~-----~~~~v~vI~tTn~~-------------------------~~ld~al~~Rfd~~i 112 (242)
.. .+.||+-++ . .-.+.++|+|||-- ..+.|.+++|+|..+
T Consensus 136 ~V---~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii 212 (315)
T d1r6bx3 136 DV---FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 212 (315)
T ss_dssp HH---HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEE
T ss_pred hH---hhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhh
Confidence 33 444444442 1 23357888999832 247888999999999
Q ss_pred EeCCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHh--CCCCCHHHHHHHHH
Q psy4165 113 EFPLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHV--TEGLSGREIAKLGV 176 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~--t~g~s~adi~~lv~ 176 (242)
.|.+.+.++-.+|+..++..+....... ++.+. ++ +..++.++.. ..++-++.|++++.
T Consensus 213 ~f~~l~~~~~~~I~~~~l~~~~~~l~~~---~i~l~-~~-~~a~~~l~~~~yd~~~GaR~L~r~Ie 273 (315)
T d1r6bx3 213 WFDHLSTDVIHQVVDKFIVELQVQLDQK---GVSLE-VS-QEARNWLAEKGYDRAMGARPMARVIQ 273 (315)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHT---TEEEE-EC-HHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhc---Ccchh-hH-HHHHHHHHHhCCCCCCChhhHHHHHH
Confidence 9999999999999999887643222111 11110 11 2334566654 23455567777774
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=1.6e-06 Score=73.78 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=79.5
Q ss_pred hHHHHHHhcCCcEEEEecCCccc--ccc-hHHHHHHHHHHHH----HhCCCcEEEEEecccccccccCCCccc--hHHHH
Q psy4165 2 FAKKLAHHSGMDYAIMTGGDVAP--MGS-SGVTAIHKVFDWA----SSSRKGLVLFIDEADAFLRKRSSETIS--ESLRA 72 (242)
Q Consensus 2 lA~aiA~e~~~~~~~v~~~~l~~--~~g-~~e~~l~~~f~~A----~~~~~p~Il~iDeiD~l~~~r~~~~~~--~~~~~ 72 (242)
|||+||..++.||+.++++.+.. +.| +.+..+..++..+ +... .+|+++||+|...+........ .....
T Consensus 84 lAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~-~~iv~lDEieK~~~~s~~~~~~~d~a~~~ 162 (364)
T d1um8a_ 84 MAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ-KGIVFIDEIDKISRLSENRSITRDVSGEG 162 (364)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHT-TSEEEEETGGGC--------------CHH
T ss_pred HHHHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhh-cccchhhhhhhhccccccccccccccchH
Confidence 79999999999999999999986 444 4456677776644 2223 6999999999988654322110 01123
Q ss_pred HHHHHHHHhccC-------------CCCeEEEEecCC-------------------------------------------
Q psy4165 73 TLNAFLYRTGEQ-------------SDKFMLVLASNT------------------------------------------- 96 (242)
Q Consensus 73 ~l~~lL~~l~~~-------------~~~v~vI~tTn~------------------------------------------- 96 (242)
+.+.||+-++.. ..+.++|.|+|-
T Consensus 163 V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (364)
T d1um8a_ 163 VQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLV 242 (364)
T ss_dssp HHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGC
T ss_pred HHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccc
Confidence 455555555410 123556666664
Q ss_pred ------cccccHHHhcccccEEEeCCCCHHHHHHHHHH
Q psy4165 97 ------PQQFDWAVNDRLDEMVEFPLPTLNERERLVRL 128 (242)
Q Consensus 97 ------~~~ld~al~~Rfd~~i~~~~P~~~~R~~Il~~ 128 (242)
...+.|.|++|||..+.|.+.+.++-.+|+..
T Consensus 243 ~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~ 280 (364)
T d1um8a_ 243 QTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQK 280 (364)
T ss_dssp CHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred cHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHH
Confidence 22477889999999999999999999999974
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=2.6e-06 Score=66.32 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=73.4
Q ss_pred hHHHHHHhcCC------cEEEEecCCcccccchHHHHHHHHHHHHHhC---CCcEEEEEecccccccccCCCccchHHHH
Q psy4165 2 FAKKLAHHSGM------DYAIMTGGDVAPMGSSGVTAIHKVFDWASSS---RKGLVLFIDEADAFLRKRSSETISESLRA 72 (242)
Q Consensus 2 lA~aiA~e~~~------~~~~v~~~~l~~~~g~~e~~l~~~f~~A~~~---~~p~Il~iDeiD~l~~~r~~~~~~~~~~~ 72 (242)
+|+.+++.... .++.+.+..- + . +-..++++.+.+... ++.-|++|||+|.+. ..
T Consensus 31 ~a~~l~~~i~~~~~~h~D~~~i~~~~~-~-I--~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~------------~~ 94 (198)
T d2gnoa2 31 VSLELPEYVEKFPPKASDVLEIDPEGE-N-I--GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQ 94 (198)
T ss_dssp HHHHHHHHHHTSCCCTTTEEEECCSSS-C-B--CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HH
T ss_pred HHHHHHHHHhccccCCCCEEEEeCCcC-C-C--CHHHHHHHHHHHhhCcccCCCEEEEEeCccccc------------hh
Confidence 46666665432 4777765321 1 1 234566666666532 224699999999993 34
Q ss_pred HHHHHHHHhccCCCCeEEEEecCCcccccHHHhcccccEEEeCCCCH
Q psy4165 73 TLNAFLYRTGEQSDKFMLVLASNTPQQFDWAVNDRLDEMVEFPLPTL 119 (242)
Q Consensus 73 ~l~~lL~~l~~~~~~v~vI~tTn~~~~ld~al~~Rfd~~i~~~~P~~ 119 (242)
..+.||+.|++++.+.++|.+|++++.|.|.+++|+. .+.|+.|..
T Consensus 95 aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~-~i~~~~p~~ 140 (198)
T d2gnoa2 95 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVF-RVVVNVPKE 140 (198)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCHH
T ss_pred hhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceE-EEeCCCchH
Confidence 5688999999888999999999999999999999995 889988854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.08 E-value=6.3e-05 Score=62.51 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=94.9
Q ss_pred cEEEEEecccccccccCCCccchHHHHHHHHHHHHhccC-------------CCCeEEEEecCCcc-cccHHHhcccccE
Q psy4165 46 GLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQ-------------SDKFMLVLASNTPQ-QFDWAVNDRLDEM 111 (242)
Q Consensus 46 p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~-------------~~~v~vI~tTn~~~-~ld~al~~Rfd~~ 111 (242)
..|+||||++.+- ..+++.|+.-|++. +..+++|+|+|..+ .++++++.||+..
T Consensus 128 ~gvl~iDEi~~~~------------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~ 195 (333)
T d1g8pa_ 128 RGYLYIDECNLLE------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLS 195 (333)
T ss_dssp TEEEEETTGGGSC------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEE
T ss_pred ccEeecccHHHHH------------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcce
Confidence 4799999999983 24566777766421 23578888888654 5899999999999
Q ss_pred EEeCCC-CHHHHHHHHHHHHhccccchh-------------------hhcccccccCCCChhHhHHHHHHhCCCCCHHHH
Q psy4165 112 VEFPLP-TLNERERLVRLYFDKFVLQPA-------------------AQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREI 171 (242)
Q Consensus 112 i~~~~P-~~~~R~~Il~~~l~~~~~~~~-------------------~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi 171 (242)
+.++.| +...|.++............. ...-......+ +....+..........|.+-.
T Consensus 196 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~-~~~~~~~~~~~~~~~~S~R~~ 274 (333)
T d1g8pa_ 196 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGE 274 (333)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHH
T ss_pred eeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCH-HHHHHHHHHHHHcCCCChHHH
Confidence 999987 667776666543211000000 00000011110 111223345555666799999
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHh
Q psy4165 172 AKLGVAWQASAYASEDGVLTEAMVMSKVEDSIRA 205 (242)
Q Consensus 172 ~~lv~~a~~~~~~~~~~~~~~~~~~~a~~~~~~~ 205 (242)
..+++.|++.+.-..+..++.+|+.+++.-++.-
T Consensus 275 ~~llrvArtiA~L~gr~~V~~~di~~a~~lvL~h 308 (333)
T d1g8pa_ 275 LTLLRSARALAALEGATAVGRDHLKRVATMALSH 308 (333)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 9999988888877888899999999998877643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=3.3e-05 Score=67.04 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=57.8
Q ss_pred EEEEEecccccccccCCCccchHHHHHHHHHHHHhc----------cCCCCeEEEEec----CCcccccHHHhcccccEE
Q psy4165 47 LVLFIDEADAFLRKRSSETISESLRATLNAFLYRTG----------EQSDKFMLVLAS----NTPQQFDWAVNDRLDEMV 112 (242)
Q Consensus 47 ~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~----------~~~~~v~vI~tT----n~~~~ld~al~~Rfd~~i 112 (242)
.++|+||+|.........+...........++..+. ...+.+++|+++ ..+..+-|.|.|||...+
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v 330 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 330 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEE
Confidence 589999999998876655433333344445555442 224456777765 456678899999999999
Q ss_pred EeCCCCHHHHHHHHH
Q psy4165 113 EFPLPTLNERERLVR 127 (242)
Q Consensus 113 ~~~~P~~~~R~~Il~ 127 (242)
.+...+.++-.+||.
T Consensus 331 ~L~~L~~~dL~rILt 345 (443)
T d1g41a_ 331 ELTALSAADFERILT 345 (443)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred EccCccHHHHHHHHH
Confidence 999999999999884
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=97.65 E-value=0.00098 Score=52.93 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=86.9
Q ss_pred hHHHHHHhcC---CcEEEEecCCcccccchHHHHHHHH------------------HHHHHhCCCcEEEEEecccccccc
Q psy4165 2 FAKKLAHHSG---MDYAIMTGGDVAPMGSSGVTAIHKV------------------FDWASSSRKGLVLFIDEADAFLRK 60 (242)
Q Consensus 2 lA~aiA~e~~---~~~~~v~~~~l~~~~g~~e~~l~~~------------------f~~A~~~~~p~Il~iDeiD~l~~~ 60 (242)
+|++|..... .+++.+++..+.. ......+ |+.|. ...|||||||.+
T Consensus 39 ~A~~ih~~s~~~~~~~~~~~~~~~~~-----~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~----gGtL~l~~i~~L--- 106 (247)
T d1ny5a2 39 VARLIHKLSDRSKEPFVALNVASIPR-----DIFEAELFGYEKGAFTGAVSSKEGFFELAD----GGTLFLDEIGEL--- 106 (247)
T ss_dssp HHHHHHHHSTTTTSCEEEEETTTSCH-----HHHHHHHHCBCTTSSTTCCSCBCCHHHHTT----TSEEEEESGGGC---
T ss_pred HHHHHHHhcCCcccccccchhhhhhh-----cccHHHhcCcccCCcCCcccccCCHHHccC----CCEEEEeChHhC---
Confidence 6787765543 4788888877632 1122222 33332 578999999999
Q ss_pred cCCCccchHHHHHHHHHHHH-----hc---cCCCCeEEEEecCCcc-------cccHHHhcccc-cEEEeCCC--CHHHH
Q psy4165 61 RSSETISESLRATLNAFLYR-----TG---EQSDKFMLVLASNTPQ-------QFDWAVNDRLD-EMVEFPLP--TLNER 122 (242)
Q Consensus 61 r~~~~~~~~~~~~l~~lL~~-----l~---~~~~~v~vI~tTn~~~-------~ld~al~~Rfd-~~i~~~~P--~~~~R 122 (242)
+......+..+|.. ++ ....++-+|++|+.+- .+++.|..|+. ..|.+|+. -.++.
T Consensus 107 ------~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di 180 (247)
T d1ny5a2 107 ------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDI 180 (247)
T ss_dssp ------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHH
T ss_pred ------CHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhH
Confidence 33344444445432 11 1112456778776531 23444443332 24565544 24566
Q ss_pred HHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCH--HHHHHHHHHHHHHHhhhcCCCccHHHHH
Q psy4165 123 ERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSG--REIAKLGVAWQASAYASEDGVLTEAMVM 196 (242)
Q Consensus 123 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~--adi~~lv~~a~~~~~~~~~~~~~~~~~~ 196 (242)
..|++.++.++.... +.....++ ...+..|... .|.| ++|++++. .++.......|+.+|+-
T Consensus 181 ~~l~~~~l~~~~~~~------~~~~~~ls-~~al~~L~~~--~WPGNl~EL~~~l~---~a~~~~~~~~I~~~dl~ 244 (247)
T d1ny5a2 181 IPLANHFLKKFSRKY------AKEVEGFT-KSAQELLLSY--PWYGNVRELKNVIE---RAVLFSEGKFIDRGELS 244 (247)
T ss_dssp HHHHHHHHHHHHHHT------TCCCCEEC-HHHHHHHHHS--CCTTHHHHHHHHHH---HHHHHCCSSEECHHHHH
T ss_pred hhhhhhhhhhhhhhc------CCCCCCCC-HHHHHHHHhC--CCCCHHHHHHHHHH---HHHHhCCCCeECHHHcc
Confidence 677788887643321 11111122 2233444443 3555 57777776 33333445678888774
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.92 E-value=0.029 Score=43.41 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc---------HHHhcccccEEEe
Q psy4165 44 RKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD---------WAVNDRLDEMVEF 114 (242)
Q Consensus 44 ~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld---------~al~~Rfd~~i~~ 114 (242)
.++.++++||+|.+....... + ...|..+.....++..|.++.....+. ..+.+|+...+++
T Consensus 135 ~~~~~i~id~~~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L 205 (283)
T d2fnaa2 135 KDNVIIVLDEAQELVKLRGVN--------L-LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVEL 205 (283)
T ss_dssp SSCEEEEEETGGGGGGCTTCC--------C-HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEE
T ss_pred ccccccccchhhhhcccchHH--------H-HHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEee
Confidence 348999999999986533221 1 122222212233455555443332211 1222566678999
Q ss_pred CCCCHHHHHHHHHHHHhccccchhhhcccccccCCCChhHhHHHHHHhCCCCCHHHHHHHHH
Q psy4165 115 PLPTLNERERLVRLYFDKFVLQPAAQGKRRLKVAPFDYTSLCSKIAHVTEGLSGREIAKLGV 176 (242)
Q Consensus 115 ~~P~~~~R~~Il~~~l~~~~~~~~~~~~~~~~~~~~d~~~~l~~la~~t~g~s~adi~~lv~ 176 (242)
++.+.++..++++..+...+.. .+ +. +.+.+.+.|. |..|..++.
T Consensus 206 ~~l~~~e~~~~l~~~~~~~~~~----------~~--~~----~~i~~~~~G~-P~~L~~~~~ 250 (283)
T d2fnaa2 206 KPFSREEAIEFLRRGFQEADID----------FK--DY----EVVYEKIGGI-PGWLTYFGF 250 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC----------CC--CH----HHHHHHHCSC-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhhhcCCC----------HH--HH----HHHHHHhCCC-HHHHHHHHH
Confidence 9999999999999988753222 12 22 6788888885 778887765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.14 E-value=0.00018 Score=57.22 Aligned_cols=99 Identities=1% Similarity=-0.195 Sum_probs=51.9
Q ss_pred ChHHHHHHhcCCcEEEEecCCccccc----chHHHHHHHHHHHHHhCCCcEEEEEecccccccccCCCc-cchHHHHHHH
Q psy4165 1 MFAKKLAHHSGMDYAIMTGGDVAPMG----SSGVTAIHKVFDWASSSRKGLVLFIDEADAFLRKRSSET-ISESLRATLN 75 (242)
Q Consensus 1 llA~aiA~e~~~~~~~v~~~~l~~~~----g~~e~~l~~~f~~A~~~~~p~Il~iDeiD~l~~~r~~~~-~~~~~~~~l~ 75 (242)
+||++||++++++|+.++++.+..+. +.........+..++... +++.+.++.+.+........ ........+.
T Consensus 47 ~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (273)
T d1gvnb_ 47 SLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS-NRMTEAIISRLSDQGYNLVIEGTGRTTDVPI 125 (273)
T ss_dssp HHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHH-HHHHHHHHHHHHHHTCCEEECCCCCCSHHHH
T ss_pred HHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhc-cchHHHHHHHHHhhCCCCcccccccchHHHH
Confidence 48999999999999999998886532 233334444555555443 44444444433333222111 0111122334
Q ss_pred HHHHHhccCCCCeEEEEecCCcccc
Q psy4165 76 AFLYRTGEQSDKFMLVLASNTPQQF 100 (242)
Q Consensus 76 ~lL~~l~~~~~~v~vI~tTn~~~~l 100 (242)
.++..+...+..+.+...++.....
T Consensus 126 ~~~~~~~~~~~~~~i~~~~~~~~~~ 150 (273)
T d1gvnb_ 126 QTATMLQAKGYETKMYVMAVPKINS 150 (273)
T ss_dssp HHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred HHHHHHHHcCCeEEEEecCCCchhh
Confidence 4555454444445555555544433
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=88.44 E-value=1.1 Score=31.55 Aligned_cols=24 Identities=25% Similarity=0.435 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeccccc
Q psy4165 33 IHKVFDWASSSRKGLVLFIDEADAF 57 (242)
Q Consensus 33 l~~~f~~A~~~~~p~Il~iDeiD~l 57 (242)
.+..+..+.... |.+|++||+...
T Consensus 88 ~~~~l~~~~~~~-~~vlllDE~~~~ 111 (178)
T d1ye8a1 88 LERAYREAKKDR-RKVIIIDEIGKM 111 (178)
T ss_dssp HHHHHHHHHHCT-TCEEEECCCSTT
T ss_pred HHHHHHHHHhcC-CCceeecCCCcc
Confidence 445555666566 999999997654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.52 E-value=2.9 Score=32.23 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHH--hCCCcEEEEEecccccccccCCCccchHHHHHHHHHHHHhccCCCCeEEEEecCCccccc
Q psy4165 27 SSGVTAIHKVFDWAS--SSRKGLVLFIDEADAFLRKRSSETISESLRATLNAFLYRTGEQSDKFMLVLASNTPQQFD 101 (242)
Q Consensus 27 g~~e~~l~~~f~~A~--~~~~p~Il~iDeiD~l~~~r~~~~~~~~~~~~l~~lL~~l~~~~~~v~vI~tTn~~~~ld 101 (242)
+.+++.+..+...+. ....|.+++|||+|.-+ +....+.+..+|..+.. +.=||.||.+|.-+|
T Consensus 221 ~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~L--------hp~~~~~l~~~l~~~~~---~~QviitTHsp~~~~ 286 (308)
T d1e69a_ 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL--------DDYNAERFKRLLKENSK---HTQFIVITHNKIVME 286 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC--------CHHHHHHHHHHHHHHTT---TSEEEEECCCTTGGG
T ss_pred hHHHhhHHHHHhhhhhhhhccCchhhhhhccccC--------CHHHHHHHHHHHHHhcc---CCEEEEEECCHHHHH
Confidence 566666554433332 22237999999999765 33344555566665532 235677898887665
|