Psyllid ID: psy4168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHccccccccEEEcccHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHcccccccHHHHHHHHHccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHccccccHccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccHHcccccccccHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MEYMDKRAkrrkkketysnifslpnvqaappppppppplpppppmmgttpppmmgtppppppmmgtppppppmmgttphvlgplywtrlivspeipsdttplwkeleevpinnlEEFTELFSRQvtaqrpvtrkrqqksskVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHlasnsdlqldkpeqfladladiphFSERIACFmfeadfsdSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLgnfmnggnrlrgqadgfgleilpklkdvrskdnsvTLLHFIVRTYlrnsenplneslpvpepgdvdraasVVFDDIHSQLSTLAKKLDAVTISMNKVvqeskpdhmepfrTKMEScvktgkfkSVLKFYQYipkgipesdvtpkdlfmlwapfchdFKDFWKKEQDRIIKTK
meymdkrakrrkkketysnifslpnvqaappppPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFsrqvtaqrpvtrkrqqksskvqnvarlidskrsqnvGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPklkdvrskdnsvTLLHFIVRtylrnsenplneslpvpepGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVvqeskpdhmepfrTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK
MEYMDKRAKRRKKKETYSNIFSLPNVQAAppppppppplpppppmmgttpppmmgtppppppmmgtppppppmmgttpHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK
******************************************************************************HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFS*********************************NVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLR*********************ASVVFDDIHSQLSTLAKKLDAVTISM********************SCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKK*********
***********************************************************************************LYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTE******************************DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLI***********LDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTI********************MESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDR*****
**************ETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQV*******************VARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKK*********
*****************************************************************************PHVLGPLYWTRLIVSPEI***TTPLWKELEEVPINNLEEFTELFSRQ*****************VQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEYMDKRAKRRKKKETYSNIFSLPNVQAAPPPPPPPPPLPPPPPMMGTTPPPMMGTPPPPPPMMGTPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q9NZ561722 Formin-2 OS=Homo sapiens yes N/A 0.814 0.214 0.407 1e-80
Q9JL041578 Formin-2 OS=Mus musculus yes N/A 0.814 0.234 0.4 2e-77
Q68DA71419 Formin-1 OS=Homo sapiens no N/A 0.819 0.262 0.399 2e-76
Q058581213 Formin OS=Gallus gallus G no N/A 0.821 0.307 0.385 2e-72
Q058601466 Formin-1 OS=Mus musculus no N/A 0.819 0.253 0.368 9e-72
Q10Q99892 Formin-like protein 8 OS= yes N/A 0.784 0.399 0.250 2e-27
Q6ZCX31364 Formin-like protein 6 OS= no N/A 0.676 0.225 0.273 6e-26
Q9LVN11266 Formin-like protein 13 OS yes N/A 0.632 0.226 0.259 9e-26
Q6K8Z41385 Formin-like protein 7 OS= no N/A 0.610 0.2 0.276 1e-25
Q9FLQ71649 Formin-like protein 20 OS yes N/A 0.654 0.180 0.269 2e-25
>sp|Q9NZ56|FMN2_HUMAN Formin-2 OS=Homo sapiens GN=FMN2 PE=1 SV=4 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 25/395 (6%)

Query: 83   PLYWTRLIVSPEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKV 142
            PLYWTR+ +  +  S T+ +W+++EE P  +  EF ELFS+    +R          +K 
Sbjct: 1295 PLYWTRIQLHSKRDSSTSLIWEKIEE-PSIDCHEFEELFSKTAVKERKKPISDTISKTKA 1353

Query: 143  QNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEIN 202
            + V +L+ +KRSQ VGIL  SLH++  +I+ A+ N+D SVV LE LQ +Y+ RA  +E+ 
Sbjct: 1354 KQVVKLLSNKRSQAVGILMSSLHLDMKDIQHAVVNLDNSVVDLETLQALYENRAQSDELE 1413

Query: 203  LIRAHLASNSDLQ----LDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNN 258
             I  H  S+ D +    LDKPEQFL +L+ IP+FSER+ C +F++ FS+SI  I  KL  
Sbjct: 1414 KIEKHGRSSKDKENAKSLDKPEQFLYELSLIPNFSERVFCILFQSTFSESICSIRRKLEL 1473

Query: 259  IKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVT 318
            ++ +CE L     + +V+ ++L+ GN+MNGGN+ RGQADGFGL+ILPKLKDV+S DNS +
Sbjct: 1474 LQKLCETLKNGPGVMQVLGLVLAFGNYMNGGNKTRGQADGFGLDILPKLKDVKSSDNSRS 1533

Query: 319  LLHFIVRTYLRN-SENPLNES--LPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTIS 375
            LL +IV  YLRN  E+   E    P+PEP D+ +A+ + F+D    L  L K L A  + 
Sbjct: 1534 LLSYIVSYYLRNFDEDAGKEQCLFPLPEPQDLFQASQMKFEDFQKDLRKLKKDLKACEVE 1593

Query: 376  MNKVVQESKPDHMEPFRTKMESCVKTGK----------------FKSVLKFYQYIPKGIP 419
              KV Q S  +HM+PF+  ME  +   K                F     ++   PK + 
Sbjct: 1594 AGKVYQVSSKEHMQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYFFMKPK-LG 1652

Query: 420  ESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK 454
            E +V+P   F +W  F  DFKDFWKKE   +++ +
Sbjct: 1653 EKEVSPNAFFSIWHEFSSDFKDFWKKENKLLLQER 1687

Homo sapiens (taxid: 9606)
>sp|Q9JL04|FMN2_MOUSE Formin-2 OS=Mus musculus GN=Fmn2 PE=1 SV=2 Back     alignment and function description
>sp|Q68DA7|FMN1_HUMAN Formin-1 OS=Homo sapiens GN=FMN1 PE=2 SV=3 Back     alignment and function description
>sp|Q05858|FMN_CHICK Formin OS=Gallus gallus GN=LD PE=2 SV=1 Back     alignment and function description
>sp|Q05860|FMN1_MOUSE Formin-1 OS=Mus musculus GN=Fmn1 PE=1 SV=2 Back     alignment and function description
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZCX3|FH6_ORYSJ Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVN1|FH13_ARATH Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3 Back     alignment and function description
>sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica GN=FH7 PE=2 SV=2 Back     alignment and function description
>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
328719030463 PREDICTED: protein cappuccino-like [Acyr 0.861 0.844 0.518 1e-116
91089831 1011 PREDICTED: similar to formin 1,2/cappucc 0.819 0.367 0.507 1e-110
242024882 1111 formin 1,2/cappuccino, putative [Pedicul 0.854 0.349 0.502 1e-110
322778869 894 hypothetical protein SINV_11590 [Solenop 0.865 0.439 0.474 1e-100
332020547 1301 Protein cappuccino [Acromyrmex echinatio 0.867 0.302 0.473 1e-100
350403133 1071 PREDICTED: hypothetical protein LOC10074 0.892 0.378 0.457 1e-100
345487072550 PREDICTED: protein cappuccino [Nasonia v 0.843 0.696 0.467 2e-99
340728270 990 PREDICTED: hypothetical protein LOC10064 0.870 0.398 0.456 1e-98
357618949 1465 putative formin 1,2/cappuccino [Danaus p 0.839 0.260 0.479 3e-98
383850427 981 PREDICTED: protein diaphanous homolog 1- 0.872 0.403 0.463 3e-97
>gi|328719030|ref|XP_001942797.2| PREDICTED: protein cappuccino-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/434 (51%), Positives = 291/434 (67%), Gaps = 43/434 (9%)

Query: 63  MMG-TPPPPPPMMG-------------TTPHVLGPLYWTRLIV-----------SPEIPS 97
           M G TP P PP+ G             T P  + PLYWTR+I+           +P+ P 
Sbjct: 1   MTGPTPFPAPPIGGWNAQRDLLRKKPITPPVPMRPLYWTRVILKDPIIETYTPTTPDSPD 60

Query: 98  DTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNV 157
              PLW +LEE PI N+ EF++LFSRQ   +  + +K+ Q   K++   +L+D+KRS+NV
Sbjct: 61  CLKPLWSDLEEAPIPNINEFSQLFSRQ-AVEPKLAKKKVQLKKKIEEFKQLLDTKRSRNV 119

Query: 158 GILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLD 217
           GILAQSLH++FSEIE+A++N D S+VS+E LQQIY+V AT+EE+ LI+ H+AS+ D  LD
Sbjct: 120 GILAQSLHLDFSEIENALYNFDTSIVSVEVLQQIYEVSATEEELGLIKGHVASHPDQPLD 179

Query: 218 KPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIA 277
           KPEQFL +L++IPHF ER+AC +F++DF+D++  I +KLNN+K    FLM SE LKKV+A
Sbjct: 180 KPEQFLLELSEIPHFGERVACLIFQSDFNDALNNIANKLNNMKVTSGFLMTSESLKKVLA 239

Query: 278 IILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNE 337
           IIL+LGN+MNGGNR RGQADGFGLEILPKL+DV+SKDNS+TLLHFIVRTY+   + P+ E
Sbjct: 240 IILALGNYMNGGNRQRGQADGFGLEILPKLRDVKSKDNSMTLLHFIVRTYINECKEPMKE 299

Query: 338 SLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRTKMES 397
           +LPVPEP DVDRAA V FDD+   L  L  KL       +KV+  S  D +EPF+TKMES
Sbjct: 300 TLPVPEPSDVDRAAHVTFDDLQQGLKELKIKLAGCKKKADKVILSSAYDSLEPFKTKMES 359

Query: 398 CVKTGK----------------FKSVLKFYQYIPKGIPE-SDVTPKDLFMLWAPFCHDFK 440
            +                    F  +++FYQ+ PK      DV PKD F LW PFC DFK
Sbjct: 360 FISMAHRQLENEHENLEESKKLFIKLMRFYQFQPKTSKSLLDVAPKDFFPLWLPFCTDFK 419

Query: 441 DFWKKEQDRIIKTK 454
           DFW  EQ RI+K K
Sbjct: 420 DFWNMEQQRIVKEK 433

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91089831|ref|XP_969724.1| PREDICTED: similar to formin 1,2/cappuccino [Tribolium castaneum] gi|270014279|gb|EFA10727.1| cappuccino [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242024882|ref|XP_002432855.1| formin 1,2/cappuccino, putative [Pediculus humanus corporis] gi|212518364|gb|EEB20117.1| formin 1,2/cappuccino, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322778869|gb|EFZ09285.1| hypothetical protein SINV_11590 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332020547|gb|EGI60962.1| Protein cappuccino [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350403133|ref|XP_003486709.1| PREDICTED: hypothetical protein LOC100747633 [Bombus impatiens] Back     alignment and taxonomy information
>gi|345487072|ref|XP_001602508.2| PREDICTED: protein cappuccino [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340728270|ref|XP_003402450.1| PREDICTED: hypothetical protein LOC100645967 [Bombus terrestris] Back     alignment and taxonomy information
>gi|357618949|gb|EHJ71733.1| putative formin 1,2/cappuccino [Danaus plexippus] Back     alignment and taxonomy information
>gi|383850427|ref|XP_003700797.1| PREDICTED: protein diaphanous homolog 1-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
FB|FBgn00002561059 capu "cappuccino" [Drosophila 0.691 0.296 0.481 3.7e-88
MGI|MGI:1018151466 Fmn1 "formin 1" [Mus musculus 0.539 0.167 0.462 2.7e-70
UNIPROTKB|Q9NZ561722 FMN2 "Formin-2" [Homo sapiens 0.704 0.185 0.429 2.2e-66
UNIPROTKB|D4A4Y91253 Fmn1 "Protein Fmn1" [Rattus no 0.702 0.254 0.436 3e-66
UNIPROTKB|J9P2161088 FMN1 "Uncharacterized protein" 0.704 0.294 0.427 3.2e-66
ZFIN|ZDB-GENE-041001-1981303 fmn1 "formin 1" [Danio rerio ( 0.724 0.252 0.413 3.5e-66
UNIPROTKB|E2R0311421 FMN1 "Uncharacterized protein" 0.704 0.225 0.425 1.2e-65
UNIPROTKB|E1BN281411 LOC614741 "Uncharacterized pro 0.704 0.226 0.423 3.3e-65
UNIPROTKB|H0YM301321 FMN1 "Formin-1" [Homo sapiens 0.704 0.242 0.425 5.6e-65
UNIPROTKB|Q68DA71419 FMN1 "Formin-1" [Homo sapiens 0.704 0.225 0.425 6.9e-65
FB|FBgn0000256 capu "cappuccino" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
 Identities = 156/324 (48%), Positives = 230/324 (70%)

Query:    93 PEIPSDTTPLWKELEEVPINNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDSK 152
             P  P  T  +W E+EE P++N++EFTELFSRQ  A  PV++ ++ K  + +++ +++D +
Sbjct:   643 PTAPPATKEIWTEIEETPLDNIDEFTELFSRQAIA--PVSKPKELKVKRAKSI-KVLDPE 699

Query:   153 RSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNS 212
             RS+NVGI+ +SLH+  SEIE AI+++D SVVSLEALQ + +++AT++E+  I+   A+  
Sbjct:   700 RSRNVGIIWRSLHVPSSEIEHAIYHIDTSVVSLEALQHMSNIQATEDELQRIKE--AAGG 757

Query:   213 DLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHL 272
             D+ LD PEQFL D++ I   SERI+C +F+A+F +S+ L+  KL  +  + + L++SE L
Sbjct:   758 DIPLDHPEQFLLDISLISMASERISCIVFQAEFEESVTLLFRKLETVSQLSQQLIESEDL 817

Query:   273 KKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYL--RN 330
             K V +IIL+LGN+MNGGNR RGQADGF L+IL KLKDV+SK++  TLLHFIVRTY+  R 
Sbjct:   818 KLVFSIILTLGNYMNGGNRQRGQADGFNLDILGKLKDVKSKESHTTLLHFIVRTYIAQRR 877

Query:   331 SE--NPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHM 388
              E  +PL   LP+PEP DV+RAA + F+++  Q+  L KK      +  KV+  S+P+ M
Sbjct:   878 KEGVHPLEIRLPIPEPADVERAAQMDFEEVQQQIFDLNKKFLGCKRTTAKVLAASRPEIM 937

Query:   389 EPFRTKMESCVKTGKFKSVLKFYQ 412
             EPF++KME  V+ G  KS+ K +Q
Sbjct:   938 EPFKSKMEEFVE-GADKSMAKLHQ 960
GO:0007315 "pole plasm assembly" evidence=NAS;IMP;TAS
GO:0007316 "pole plasm RNA localization" evidence=IMP
GO:0007304 "chorion-containing eggshell formation" evidence=IMP
GO:0048477 "oogenesis" evidence=TAS
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS
GO:0015629 "actin cytoskeleton" evidence=IEA
GO:0045010 "actin nucleation" evidence=IDA
GO:0005938 "cell cortex" evidence=IDA
GO:0030029 "actin filament-based process" evidence=IDA
GO:0008017 "microtubule binding" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007015 "actin filament organization" evidence=IMP
MGI|MGI:101815 Fmn1 "formin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZ56 FMN2 "Formin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Y9 Fmn1 "Protein Fmn1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P216 FMN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041001-198 fmn1 "formin 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R031 FMN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BN28 LOC614741 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H0YM30 FMN1 "Formin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q68DA7 FMN1 "Formin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 5e-80
smart00498392 smart00498, FH2, Formin Homology 2 Domain 7e-73
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 8e-08
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-07
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 7e-06
pfam06003264 pfam06003, SMN, Survival motor neuron protein (SMN 7e-06
pfam07777189 pfam07777, MFMR, G-box binding protein MFMR 1e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 3e-05
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 3e-05
pfam10152147 pfam10152, DUF2360, Predicted coiled-coil domain-c 3e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 4e-05
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 4e-05
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 4e-05
pfam0455457 pfam04554, Extensin_2, Extensin-like region 6e-05
pfam0455457 pfam04554, Extensin_2, Extensin-like region 6e-05
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 8e-05
pfam10349111 pfam10349, WWbp, WW-domain ligand protein 8e-05
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 9e-05
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 9e-05
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 9e-05
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 1e-04
pfam12526115 pfam12526, DUF3729, Protein of unknown function (D 2e-04
pfam13908177 pfam13908, Shisa, Wnt and FGF inhibitory regulator 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 3e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 4e-04
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 4e-04
PRK12438991 PRK12438, PRK12438, hypothetical protein; Provisio 4e-04
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 5e-04
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 5e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-04
pfam04652315 pfam04652, DUF605, Vta1 like 5e-04
PRK06975656 PRK06975, PRK06975, bifunctional uroporphyrinogen- 5e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 6e-04
pfam09849234 pfam09849, DUF2076, Uncharacterized protein conser 6e-04
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 7e-04
pfam10349111 pfam10349, WWbp, WW-domain ligand protein 8e-04
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 9e-04
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
pfam04959211 pfam04959, ARS2, Arsenite-resistance protein 2 0.001
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 0.002
pfam10349111 pfam10349, WWbp, WW-domain ligand protein 0.002
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 0.002
PRK12438991 PRK12438, PRK12438, hypothetical protein; Provisio 0.002
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.002
pfam01213313 pfam01213, CAP_N, Adenylate cyclase associated (CA 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
pfam12526115 pfam12526, DUF3729, Protein of unknown function (D 0.003
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.003
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.003
pfam04652315 pfam04652, DUF605, Vta1 like 0.003
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.003
pfam12868135 pfam12868, DUF3824, Domain of unknwon function (DU 0.003
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 0.004
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.004
PHA03201318 PHA03201, PHA03201, uracil DNA glycosylase; Provis 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  252 bits (645), Expect = 5e-80
 Identities = 107/394 (27%), Positives = 179/394 (45%), Gaps = 44/394 (11%)

Query: 66  TPPPPPPMMGTTPHVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI---NNLEEFTELFS 122
            P P   +         PL+W ++        D   +W EL+E       +L E  ELFS
Sbjct: 4   EPKPKKKLK--------PLHWDKV----NPAQDRGTVWDELDEESFEKDLDLSELEELFS 51

Query: 123 RQVTAQRPVTRKRQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASV 182
            +   ++    +++  S K +    ++D KRSQN+ IL + L +   EI  AI  MD SV
Sbjct: 52  AKAKKKKSKKSEKKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESV 111

Query: 183 VSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFE 242
           + LE L+ +  +  T EE+  ++ +       +L + EQFL +L+ IP   ER+   +F+
Sbjct: 112 LGLELLENLLKMAPTKEELKKLKEY--KGDPSKLGRAEQFLLELSKIPRLEERLEALLFK 169

Query: 243 ADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLE 302
           + F + +  +   L  +++  E L +S   KK++ +IL+LGN+MN G R RG A GF L 
Sbjct: 170 STFEEEVEELKPSLETLEAASEELRESRKFKKLLELILALGNYMNSGTR-RGNAKGFKLS 228

Query: 303 ILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQL 362
            L KL D +S DN  TLLH++V+        P        E   V++AA V  + +   +
Sbjct: 229 SLLKLSDTKSTDNKTTLLHYLVKIIREK--LPDLLDFS-SELSHVEKAAKVDLEQLEKDV 285

Query: 363 STLAKKLDAVTISMNKVVQESKPDHMEPFRTKMESCVKTGK----------------FKS 406
             L K L  +   +            + F  KM+  ++  +                FK 
Sbjct: 286 KELEKGLKKLERELEL--SALDEHPDDKFVEKMKEFLEEAEEKLDKLESLLKEAMELFKE 343

Query: 407 VLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFK 440
           + +++   PK     + +P++ F +   F   FK
Sbjct: 344 LTEYFGEDPK-----ETSPEEFFKILRDFLRMFK 372

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN) Back     alignment and domain information
>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360) Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region Back     alignment and domain information
>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) Back     alignment and domain information
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076) Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
KOG1924|consensus1102 100.0
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1925|consensus 817 100.0
KOG1923|consensus830 100.0
KOG1922|consensus833 100.0
KOG1924|consensus 1102 99.06
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 95.26
PHA032473151 large tegument protein UL36; Provisional 95.22
KOG1923|consensus830 94.77
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 93.13
KOG1925|consensus 817 91.17
PRK097521250 adhesin; Provisional 85.68
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 84.94
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 84.41
KOG4849|consensus498 81.9
PRK15313955 autotransport protein MisL; Provisional 80.89
PRK15313955 autotransport protein MisL; Provisional 80.09
>KOG1924|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-74  Score=593.67  Aligned_cols=356  Identities=24%  Similarity=0.447  Sum_probs=313.7

Q ss_pred             ccCCccceeccCCCCCCCCCCccccccccCCCCC---hHHHHHHHhhhhhccCcc---cchhhccccccccccccccccc
Q psy4168          80 VLGPLYWTRLIVSPEIPSDTTPLWKELEEVPINN---LEEFTELFSRQVTAQRPV---TRKRQQKSSKVQNVARLIDSKR  153 (454)
Q Consensus        80 ~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~~---~~e~e~lF~~~~~~~~~~---~~~~~~~~~k~~~~~~vld~kr  153 (454)
                      +||+++|.+|.+...   ..+++|.++.+.++.+   +..+.-.|+.+...++..   ..+++..++|.++. .|||+|.
T Consensus       625 ~Mrr~nW~kI~p~d~---s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel-~ilDsKt  700 (1102)
T KOG1924|consen  625 PMRRFNWSKIVPRDL---SENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKEL-RILDSKT  700 (1102)
T ss_pred             ccccCCccccCcccc---CccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhh-eecchHH
Confidence            799999999988765   5899999999998854   445566688764322211   11222234456666 8999999


Q ss_pred             chhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcCCChH
Q psy4168         154 SQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFS  233 (454)
Q Consensus       154 a~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~ip~~~  233 (454)
                      |||++|+|+.+++++++|+.+|+.+|+.+|+...|++|++.+|..|-+..|++.+...+  .|.+.|||...|++|.+++
T Consensus       701 aQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye--~l~e~EQF~vvm~~vkrL~  778 (1102)
T KOG1924|consen  701 AQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYE--DLPEPEQFVVVMSQVKRLR  778 (1102)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--CCCCHHHHhHHHhhccccC
Confidence            99999999999999999999999999999999999999999999999999999876654  6999999999999999999


Q ss_pred             hhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCcccccccccCC
Q psy4168         234 ERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSK  313 (454)
Q Consensus       234 ~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~~Ks~  313 (454)
                      .||.+++|+.+|.+.+++|++.|..+..||++||+|++|.++|++||.+|||||+|++ ..+|+||.+++|+||.|||++
T Consensus       779 pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSr-Na~afgF~is~L~kL~dTKsa  857 (1102)
T KOG1924|consen  779 PRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSR-NAQAFGFNISFLCKLRDTKSA  857 (1102)
T ss_pred             hhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc-cchhhccchHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999985 588999999999999999999


Q ss_pred             CCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHH
Q psy4168         314 DNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHMEPFRT  393 (454)
Q Consensus       314 d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~~f~~  393 (454)
                      |+++||||||++.+++++|+.+++.   +||.+|.+|+||+.+.++..++.++.++..++..+.......  ..-+.|.+
T Consensus       858 Dqk~TLLHfLae~~e~kypd~l~F~---ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~--~e~dkF~e  932 (1102)
T KOG1924|consen  858 DQKTTLLHFLAEICEEKYPDILKFP---DDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAG--NEHDKFVE  932 (1102)
T ss_pred             chhhHHHHHHHHHHHHhChhhhcch---hhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhhHHH
Confidence            9999999999999999999998874   699999999999999999999999999999988776443221  23468999


Q ss_pred             hHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q psy4168         394 KMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIK  452 (454)
Q Consensus       394 ~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k  452 (454)
                      +|..|.+                ++.|+++.+||.+|+++     ++.+|||+.|.+|.+.|..|+++|+++.+.
T Consensus       933 kM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kk-----ysmEEFFaDi~tFrnaf~ea~~en~krRee 1002 (1102)
T KOG1924|consen  933 KMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKK-----YSMEEFFADIRTFRNAFLEAVAENEKRREE 1002 (1102)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999976                56789999999999975     899999999999999999999998876554

>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>KOG1922|consensus Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4849|consensus Back     alignment and domain information
>PRK15313 autotransport protein MisL; Provisional Back     alignment and domain information
>PRK15313 autotransport protein MisL; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2j1d_G483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 6e-23
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 9e-23
3o4x_E467 Crystal Structure Of Complex Between Amino And Carb 4e-22
3obv_E457 Autoinhibited Formin Mdia1 Structure Length = 457 4e-22
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 6e-22
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 3e-20
1y64_B443 Bni1p Formin Homology 2 Domain Complexed With Atp-a 4e-06
1ux5_A411 Crystal Structures Of A Formin Homology-2 Domain Re 5e-06
1ux4_A410 Crystal Structures Of A Formin Homology-2 Domain Re 5e-06
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 167/330 (50%), Gaps = 43/330 (13%)
Query: 79  HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVP---INNLEEFTELFSRQVTAQRP----V 131
           + L    W++L   PE   + T +W E+++     I +LE+    FS     QR     V
Sbjct: 13  NALKSFNWSKL---PENKLEGT-VWTEIDDTKVFKILDLEDLERTFS---AYQRQQDFFV 65
Query: 132 TRKRQQKSS-----------KVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDA 180
               +QK +           KV+ ++ +ID +R+QN  IL   L +   EI+ AI  MD 
Sbjct: 66  NSNSKQKEADAIDDTLSSKLKVKELS-VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDE 124
Query: 181 SV-VSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACF 239
              +  + L+Q+        +I+L+  H   +   ++ K ++FL +++ I H+ +R+   
Sbjct: 125 QEDLPKDMLEQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSRINHYQQRLQSL 182
Query: 240 MFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGF 299
            F+  F++ +A +  K+  I+S  E + +S  LK+++ ++L+ GN+MN G   RG A GF
Sbjct: 183 YFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ--RGNAYGF 240
Query: 300 GLEILPKLKDVRSK-DNSVTLLHFIVRTYLRN---SENPLNESLPVPEPGDVDRAASVVF 355
            +  L K+ D +S  D ++TLLH+++ T + N   S   LNE L      D+ +AA V  
Sbjct: 241 KISSLNKIADTKSSIDKNITLLHYLI-TIVENKYPSVLNLNEELR-----DIPQAAKVNM 294
Query: 356 DDIHSQLSTLAKKLDAVTISMNKVVQESKP 385
            ++  ++STL   L AV   +    Q+S+P
Sbjct: 295 TELDKEISTLRSGLKAVETELE--YQKSQP 322
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin Length = 443 Back     alignment and structure
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Flexibly Tethered Dimer Architecture Length = 411 Back     alignment and structure
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Tethered-Dimer Architecture Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 8e-86
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 5e-82
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 5e-77
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 1e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-11
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-10
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 9e-10
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-09
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 9e-09
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-08
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 4e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 9e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-06
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-06
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-04
3q2s_C229 Cleavage and polyadenylation specificity factor S; 8e-08
3q2s_C229 Cleavage and polyadenylation specificity factor S; 3e-05
3q2s_C229 Cleavage and polyadenylation specificity factor S; 2e-04
3q2s_C229 Cleavage and polyadenylation specificity factor S; 3e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-08
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-04
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 1e-07
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 1e-06
3lvg_A624 Clathrin heavy chain 1; SELF assembly, coated PIT, 1e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 5e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 5e-04
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 6e-05
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 1e-04
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 6e-04
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 6e-05
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 1e-04
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 2e-04
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 6e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 1e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 3e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 6e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 8e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 8e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 8e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 8e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 3e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 5e-04
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 7e-04
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  269 bits (689), Expect = 8e-86
 Identities = 87/396 (21%), Positives = 170/396 (42%), Gaps = 40/396 (10%)

Query: 83  PLYWTRLIVSPEIPSDTTPLWKELEEVPINN---LEEFTELFSRQVTAQRP-----VTRK 134
              W++  V+ ++  D    W +++E    N     + T  FS Q    +         +
Sbjct: 12  RPNWSK-FVAEDLSQDC--FWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEE 68

Query: 135 RQQKSSKVQNVARLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDV 194
           ++    K     +++DSK +QN+ I   S  + + EI++ I  ++ +V++   +Q +   
Sbjct: 69  KKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQ 128

Query: 195 RATDEEINLIRAHLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDS 254
               E++ ++        DL   + EQF   +  +P    R+   +F+  FS+ +  I  
Sbjct: 129 MPEPEQLKMLSELKEEYDDL--AESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKP 186

Query: 255 KLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKD 314
           ++ ++ + CE L KSE+   ++ + L +GN+MN G+R    A GF +  L KL+D +S D
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSR-NAGAFGFNISFLCKLRDTKSAD 245

Query: 315 NSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTI 374
             +TLLHF+      +    L       E   V++A+ V  +++   L  + K++  V  
Sbjct: 246 QKMTLLHFLAELCENDHPEVLKFP---DELAHVEKASRVSAENLQKSLDQMKKQIADVER 302

Query: 375 SMNKVVQESKPDHMEPFRTKMESCVKT----------------GKFKSVLKFYQYIPKGI 418
            +      +  D  + F  KM S VK                   +K +  ++ + PK  
Sbjct: 303 DVQN--FPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK-- 358

Query: 419 PESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKTK 454
               ++ ++ FM    F + F    K+ Q R    +
Sbjct: 359 ---KLSVEEFFMDLHNFRNMFLQAVKENQKRRETEE 391
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
4eah_A402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 100.0
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 100.0
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
Probab=100.00  E-value=4e-72  Score=580.93  Aligned_cols=358  Identities=24%  Similarity=0.429  Sum_probs=312.6

Q ss_pred             CccCCccceeccCCCCCCCCCCccccccccCCCC---ChHHHHHHHhhhhhccCccc------chhhccccccccccccc
Q psy4168          79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPIN---NLEEFTELFSRQVTAQRPVT------RKRQQKSSKVQNVARLI  149 (454)
Q Consensus        79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l~---~~~e~e~lF~~~~~~~~~~~------~~~~~~~~k~~~~~~vl  149 (454)
                      .+||++||++|.....   ..+|||.++++.++.   .++++|.+|+.+....++..      .++...++|++.+ +||
T Consensus         8 ~~mK~l~W~ki~~~~~---~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v-~lL   83 (457)
T 3obv_E            8 VQLRRPNWSKFVAEDL---SQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKEL-KVL   83 (457)
T ss_dssp             SCBCCCCCCEECTTTT---CSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCC-SSS
T ss_pred             CCCcCCCceeCCcccc---CCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCcee-Eec
Confidence            5899999999987653   368999999988874   35778999998754322210      0111224456667 999


Q ss_pred             ccccchhhhhhhccCCCChHHHHHHHhcCCcCCCCHHHHHHHHhccCCHHHHHHHHHhhccCCCCCCCchHHHHHHHhcC
Q psy4168         150 DSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRAHLASNSDLQLDKPEQFLADLADI  229 (454)
Q Consensus       150 d~kra~ni~I~L~~lk~~~~~i~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~L~~~e~f~~~l~~i  229 (454)
                      |+||||||+|+|+++++++++|++||++||...|+.|.|+.|++++||+||++.|++|.++.  ..|+++|||++.|++|
T Consensus        84 D~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~--~~L~~~EqF~~~l~~I  161 (457)
T 3obv_E           84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY--DDLAESEQFGVVMGTV  161 (457)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSG--GGSCHHHHHHHHHTSS
T ss_pred             CHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccCh--hhcCHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999998764  3799999999999999


Q ss_pred             CChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCCCCCCCcceeccCccccccc
Q psy4168         230 PHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKD  309 (454)
Q Consensus       230 p~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~~~rg~a~GF~L~sL~kL~~  309 (454)
                      |++..||+||+|+.+|++.+.+|.+.|..+..||++|++|..|+.||++||++|||||+|+ .+|+|+||+|+||.||.+
T Consensus       162 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~-~~g~A~GFkL~sL~KL~d  240 (457)
T 3obv_E          162 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGS-RNAGAFGFNISFLCKLRD  240 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTS-TTCSCSCBCGGGHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCC-cCCCeeeEehHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999998 589999999999999999


Q ss_pred             ccCCCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q psy4168         310 VRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPDHME  389 (454)
Q Consensus       310 ~Ks~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~~~~~~~~~~~~~s~~~~~~  389 (454)
                      ||++|+++|||||||+++.+++|+++.+   .+||.+|.+|++||+++|..++++|.+++..++.+++....  ..+..+
T Consensus       241 ~Ks~d~k~TLLh~l~~~v~~~~p~l~~f---~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~--~~~~~d  315 (457)
T 3obv_E          241 TKSADQKMTLLHFLAELCENDHPEVLKF---PDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPA--ATDEKD  315 (457)
T ss_dssp             CBCSSTTCBHHHHHHHHHHHHCGGGGGH---HHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCC--CSSTTC
T ss_pred             hhcCCCCccHHHHHHHHHHHcCccccCC---hhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CcchhH
Confidence            9999999999999999999999987764   37899999999999999999999999999999998875432  124457


Q ss_pred             chHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhHHHHHHHHHHHHHHHHHHHHhc
Q psy4168         390 PFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLWAPFCHDFKDFWKKEQDRIIKT  453 (454)
Q Consensus       390 ~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~~~F~~~f~~a~k~~~~~~~k~  453 (454)
                      .|..+|..|+.                .+.|.+++.|||||++.     +++++||++|.+|+..|++|+++|+++.++|
T Consensus       316 ~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~-----~~~~eFF~~~~~F~~~fkkA~~eN~~r~e~e  390 (457)
T 3obv_E          316 KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK-----LSVEEFFMDLHNFRNMFLQAVKENQKRRETE  390 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999986                45799999999999874     7899999999999999999999999887654
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 7e-71
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 3e-59
d1jvra_137 a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell 5e-05
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  225 bits (575), Expect = 7e-71
 Identities = 76/324 (23%), Positives = 146/324 (45%), Gaps = 29/324 (8%)

Query: 147 RLIDSKRSQNVGILAQSLHIEFSEIESAIFNMDASVVSLEALQQIYDVRATDEEINLIRA 206
           +++DSK +QN+ I   S  + + EI++ I  ++ +V++   +Q +       E++ ++  
Sbjct: 5   KVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSE 64

Query: 207 HLASNSDLQLDKPEQFLADLADIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFL 266
                 DL   + EQF   +  +P    R+   +F+  FS+ +  I  ++ ++ + CE L
Sbjct: 65  LKEEYDDL--AESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEEL 122

Query: 267 MKSEHLKKVIAIILSLGNFMNGGNRLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRT 326
            KSE+   ++ + L +GN+MN G+R    A GF +  L KL+D +S D  +TLLHF+   
Sbjct: 123 RKSENFSSLLELTLLVGNYMNAGSR-NAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 327 YLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLDAVTISMNKVVQESKPD 386
              +    L       E   V++A+ V  +++   L  + K++  V   +      +  D
Sbjct: 182 CENDHPEVLKFP---DELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF--PAATD 236

Query: 387 HMEPFRTKMESCVKT----------------GKFKSVLKFYQYIPKGIPESDVTPKDLFM 430
             + F  KM S VK                   +K +  ++ + PK      ++ ++ FM
Sbjct: 237 EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK-----KLSVEEFFM 291

Query: 431 LWAPFCHDFKDFWKKEQDRIIKTK 454
               F + F    K+ Q R    +
Sbjct: 292 DLHNFRNMFLQAVKENQKRRETEE 315
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-64  Score=519.28  Aligned_cols=354  Identities=17%  Similarity=0.263  Sum_probs=301.7

Q ss_pred             CccCCccceeccCCCCCCCCCCccccccccCCC-------CChHHHHHHHhhhhhccCcccchhhccccccccccccccc
Q psy4168          79 HVLGPLYWTRLIVSPEIPSDTTPLWKELEEVPI-------NNLEEFTELFSRQVTAQRPVTRKRQQKSSKVQNVARLIDS  151 (454)
Q Consensus        79 ~~lk~l~W~kI~~~~~~~~~~~tiW~~l~~~~l-------~~~~e~e~lF~~~~~~~~~~~~~~~~~~~k~~~~~~vld~  151 (454)
                      ++||+|||++|+.      ..+|||+.+.+..+       .++++||++|+.+....     .....+++.+.+ +|||+
T Consensus         7 ~klK~l~W~ki~~------~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~-----~~~~~~~~~~~~-~lLd~   74 (411)
T d1ux5a_           7 KKLKQLHWEKLDC------TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKS-----LASKRKEDLQKI-TFLSR   74 (411)
T ss_dssp             SCBCCCCCCCCSS------CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHH-----HHHHHHHTTTSB-CCSCH
T ss_pred             CCCCCCCceeCCC------CCCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCC-----Cccccccccccc-ccCcH
Confidence            5799999999964      35899998865433       24678999998654321     111122334455 99999


Q ss_pred             ccchhhhhhhccC-CCChHHHHHHHhcCCcCCCCHHHHHH--------------HHhccCCHHHHHHHHHhhccC----C
Q psy4168         152 KRSQNVGILAQSL-HIEFSEIESAIFNMDASVVSLEALQQ--------------IYDVRATDEEINLIRAHLASN----S  212 (454)
Q Consensus       152 kra~ni~I~L~~l-k~~~~~i~~ai~~~d~~~l~~e~l~~--------------L~~~~Pt~eE~~~l~~~~~~~----~  212 (454)
                      ||+|||+|+|+++ ++++++|+++|.+||..+|+.+.+..              |.+++||.+|++.|++|....    .
T Consensus        75 kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d  154 (411)
T d1ux5a_          75 DISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKD  154 (411)
T ss_dssp             HHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSC
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhccccCC
Confidence            9999999999999 79999999999999999998877755              447999999999999987432    2


Q ss_pred             CCCCCchHHHHHHHh--cCCChHhhHHHhhhHhhhHHHHHHHHHhHHHHHHHHHHHHcChhHHHHHHHHHHhhhhccCCC
Q psy4168         213 DLQLDKPEQFLADLA--DIPHFSERIACFMFEADFSDSIALIDSKLNNIKSVCEFLMKSEHLKKVIAIILSLGNFMNGGN  290 (454)
Q Consensus       213 ~~~L~~~e~f~~~l~--~ip~~~~Rl~~~~f~~~f~~~~~~i~~~l~~l~~a~~~l~~S~~l~~lL~~iL~iGN~lN~g~  290 (454)
                      ...|+.+|+|++.|+  .||++..||+||.|+.+|++.++++.+.+..+..||++|++|..|+.+|++||++|||||+|+
T Consensus       155 ~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~  234 (411)
T d1ux5a_         155 PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS  234 (411)
T ss_dssp             STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG
T ss_pred             hhhcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcCCC
Confidence            247999999999986  489999999999999999999999999999999999999999999999999999999999984


Q ss_pred             CCCCCcceeccCcccccccccCCCCCccHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHhcccHHHHHHHHHHHHHHHH
Q psy4168         291 RLRGQADGFGLEILPKLKDVRSKDNSVTLLHFIVRTYLRNSENPLNESLPVPEPGDVDRAASVVFDDIHSQLSTLAKKLD  370 (454)
Q Consensus       291 ~~rg~a~GF~L~sL~kL~~~Ks~d~k~tLLh~lv~~~~~~~~~~~~~~l~~~el~~v~~A~~v~~~~l~~~~~~L~~~l~  370 (454)
                         |+|+||+|+||.||.++||+|+++|||||||+++++++|+++.+   .+||.+|..|++++++++..+++.|.+++.
T Consensus       235 ---~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~---~~el~~v~~a~~~~~~~l~~~~~~L~~~l~  308 (411)
T d1ux5a_         235 ---KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDF---LSELEPVLDVVKVSIEQLVNDCKDFSQSIV  308 (411)
T ss_dssp             ---GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGH---HHHTHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHhCcHhhcc---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence               57999999999999999999999999999999999999987654   368999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcC--CCCCCcchHHhHHHHHh----------------hhhhHHHHHhhcccCCCCCCCCCChhhhhHhH
Q psy4168         371 AVTISMNKVVQES--KPDHMEPFRTKMESCVK----------------TGKFKSVLKFYQYIPKGIPESDVTPKDLFMLW  432 (454)
Q Consensus       371 ~~~~~~~~~~~~s--~~~~~~~f~~~~~~fl~----------------~~~f~~~~~~fge~~~~~~~~~~~~~eFF~~~  432 (454)
                      .++++++......  .....+.|...|..|+.                .+.|.+++.||||+++.    .+++++||++|
T Consensus       309 ~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~----~~~~~~fF~~~  384 (411)
T d1ux5a_         309 NVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGD----KFAKISFFKKF  384 (411)
T ss_dssp             HHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC----HHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCCHHHHHHHH
Confidence            9999987543321  12245789999999976                56799999999998753    36799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q psy4168         433 APFCHDFKDFWKKEQDRIIKTK  454 (454)
Q Consensus       433 ~~F~~~f~~a~k~~~~~~~k~~  454 (454)
                      .+|+..|++|+++|.+++++|+
T Consensus       385 ~~F~~~~~~a~~en~~~~e~e~  406 (411)
T d1ux5a_         385 ADFINEYKKAQAQNLAAEEEER  406 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887763
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure