Psyllid ID: psy4171

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI
cccEEEEccccccccHHHHHHccccccccccHHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEEEcccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccHccccccccccHcHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHcccccccccHHcccccccccHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHcccHHHcccccEEEEccccccccEEEEcccccccccccccccc
msssiekkltlslpssrriieknggktpltyHQFQSIvakmdspspaeapvtpllvrqattplrddhdekygvptleelgfdiegllpptwkggeTEAMRRLERHLERKAWVasfgrpkmtpqsllasqtglspflrfgclstrlFYHDLNKLYKRikkappplslhgqlLWREFFYCAatrnpnfdrmlgnpicvqipwDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFfhcycpvkfgrkadpngdfi
msssiekkltlslpssrriieknggktplTYHQFQSIVAKMDSPSPAEAPVTPLLVRQAttplrddhdeKYGVPTleelgfdiegllpptwkgGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGrkadpngdfi
MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCssffqqffHCYCPVKFGRKADPNGDFI
******************************YHQF***********************************KYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGR*******LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFG**********
MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLL********RDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDL***************LHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI
*********TLSLPSSRRIIEKNGGKTPLTYHQFQSIVA**********PVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI
*SSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPN*D*I
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MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
Q6ZZY0 620 Cryptochrome-1 OS=Sylvia N/A N/A 0.967 0.482 0.722 1e-132
Q8QG61 621 Cryptochrome-1 OS=Gallus yes N/A 0.967 0.481 0.722 1e-132
Q16526 586 Cryptochrome-1 OS=Homo sa yes N/A 0.967 0.510 0.722 1e-132
Q8WP19 586 Cryptochrome-1 OS=Macaca N/A N/A 0.967 0.510 0.718 1e-131
Q32Q86 588 Cryptochrome-1 OS=Rattus yes N/A 0.967 0.508 0.722 1e-131
P97784 606 Cryptochrome-1 OS=Mus mus yes N/A 0.967 0.493 0.718 1e-131
Q5IZC5 620 Cryptochrome-1 OS=Erithac N/A N/A 0.967 0.482 0.718 1e-130
Q70AD6 587 Cryptochrome-1 OS=Spalax N/A N/A 0.967 0.509 0.712 1e-130
Q49AN0 593 Cryptochrome-2 OS=Homo sa no N/A 0.944 0.492 0.703 1e-124
Q8QG60 582 Cryptochrome-2 OS=Gallus no N/A 0.935 0.496 0.689 1e-124
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function desciption
 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/306 (72%), Positives = 257/306 (83%), Gaps = 7/306 (2%)

Query: 8   KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
           +++ +L    +IIE NGG+ PLTY +FQ+++++M+   P E PV   TP ++++ TTP+ 
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISRME---PLEMPVETITPEVMKKCTTPVS 183

Query: 65  DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
           DDHDEKYGVP+LEELGFD +GL    W GGETEA+ RLERHLERKAWVA+F RP+M   S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243

Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
           LLAS TGLSP+LRFGCLS RLFY  L  LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303

Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
           P FD+M GNPICVQIPWD N EALAKWA  +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363

Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
           FLTRGDLW+SWEEGMK+F+ELLLDADWSVNAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423

Query: 304 PNGDFI 309
           PNGD+I
Sbjct: 424 PNGDYI 429
Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.
Sylvia borin (taxid: 73324)
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1 Back     alignment and function description
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1 Back     alignment and function description
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2 Back     alignment and function description
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
347971574 1056 AGAP004261-PA [Anopheles gambiae str. PE 0.944 0.276 0.835 1e-151
312372433 1043 hypothetical protein AND_20159 [Anophele 0.944 0.279 0.839 1e-151
340720203 574 PREDICTED: cryptochrome-1-like [Bombus t 1.0 0.538 0.805 1e-151
429544803 586 cryptochrome 2 [Rhyparobia maderae] 1.0 0.527 0.799 1e-151
78191297 961 cryptochrome 2 [Anopheles gambiae] 0.944 0.303 0.835 1e-151
350420124 574 PREDICTED: cryptochrome-1 [Bombus impati 1.0 0.538 0.805 1e-151
157131015 820 DNA photolyase [Aedes aegypti] gi|108871 0.944 0.356 0.839 1e-150
307207594 558 Cryptochrome-1 [Harpegnathos saltator] 1.0 0.553 0.805 1e-150
383863231 589 PREDICTED: cryptochrome-1-like [Megachil 1.0 0.524 0.805 1e-149
307611921 730 cryptochrome 2 [Bombyx mori] gi|30641611 0.990 0.419 0.774 1e-149
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST] gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST] gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST] gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST] gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST] gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 244/292 (83%), Positives = 264/292 (90%)

Query: 18  RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLE 77
           RIIEKNGG+ PLTYHQFQ+I+A MD+P   EA +T  ++  A TP  DDHD+KYGVPTLE
Sbjct: 233 RIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANTPQYDDHDDKYGVPTLE 292

Query: 78  ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLR 137
           ELGF+ E L PP W GGETEA+ RLERHLERKAWVASFGRPKMTPQSLLASQTGLSP+LR
Sbjct: 293 ELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLR 352

Query: 138 FGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQ 197
           FGCLSTRLFY+ L  LYK+IKKA PPLSLHGQLLWREFFYCAAT+NP FD+M GNPICVQ
Sbjct: 353 FGCLSTRLFYYQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQ 412

Query: 198 IPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEG 257
           IPWD N EALAKWA+ QTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW+SWEEG
Sbjct: 413 IPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEG 472

Query: 258 MKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
           MK+F+ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGD+I
Sbjct: 473 MKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYI 524

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae] Back     alignment and taxonomy information
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae] Back     alignment and taxonomy information
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens] gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens] Back     alignment and taxonomy information
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti] gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori] gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori] gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
UNIPROTKB|E1C2Z9 624 CRY1 "Cryptochrome-1" [Gallus 0.935 0.463 0.716 8.5e-120
UNIPROTKB|F1NYE9 621 CRY1 "Cryptochrome-1" [Gallus 0.935 0.465 0.716 8.5e-120
UNIPROTKB|Q8QG61 621 CRY1 "Cryptochrome-1" [Gallus 0.935 0.465 0.716 8.5e-120
UNIPROTKB|E2RMX4 587 CRY1 "Uncharacterized protein" 0.935 0.492 0.719 1.1e-119
UNIPROTKB|Q16526 586 CRY1 "Cryptochrome-1" [Homo sa 0.935 0.493 0.716 1.1e-119
UNIPROTKB|F1SPQ5 589 CRY1 "Uncharacterized protein" 0.935 0.490 0.716 1.4e-119
ZFIN|ZDB-GENE-010426-2 619 cry1a "cryptochrome 1a" [Danio 0.941 0.470 0.714 1.4e-119
RGD|735083 588 Cry1 "cryptochrome 1 (photolya 0.941 0.494 0.717 1.8e-119
UNIPROTKB|Q32Q86 588 Cry1 "Cryptochrome-1" [Rattus 0.941 0.494 0.717 1.8e-119
UNIPROTKB|Q8WP19 586 CRY1 "Cryptochrome-1" [Macaca 0.935 0.493 0.712 2.3e-119
UNIPROTKB|E1C2Z9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
 Identities = 212/296 (71%), Positives = 244/296 (82%)

Query:    18 RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLRDDHDEKYGVP 74
             +IIE NGG+ PLTY +FQ+++++M+   P E PV   TP ++++ TTP+ DDHDEKYGVP
Sbjct:   137 KIIELNGGQPPLTYKRFQTLISRME---PLEMPVETITPEVMQKCTTPVSDDHDEKYGVP 193

Query:    75 TLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSP 134
             +LEELGFD +GL    W GGETEA+ RLERHLERKAWVA+F RP+M   SLLAS TGLSP
Sbjct:   194 SLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSP 253

Query:   135 FLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNP 193
             +LRFGCLS RLFY  L  LYK++KK + PPLSL+GQLLWREFFY AAT NP FD+M GNP
Sbjct:   254 YLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNP 313

Query:   194 ICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVS 253
             ICVQIPWD N EALAKWA  +TGFPWIDAIMTQLR+EGWIHHLARHAVACFLTRGDLW+S
Sbjct:   314 ICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIS 373

Query:   254 WEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
             WEEGMK+F+ELLLDADWSVNAG WMWLSC        HCYCPV FGR+ DPNGD+I
Sbjct:   374 WEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYI 429
GO:0003913 "DNA photolyase activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0000988 "protein binding transcription factor activity" evidence=IEA
GO:0003690 "double-stranded DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0007623 "circadian rhythm" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0042752 "regulation of circadian rhythm" evidence=IEA
UNIPROTKB|F1NYE9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8QG61 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMX4 CRY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q16526 CRY1 "Cryptochrome-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPQ5 CRY1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010426-2 cry1a "cryptochrome 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735083 Cry1 "cryptochrome 1 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32Q86 Cry1 "Cryptochrome-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WP19 CRY1 "Cryptochrome-1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48652UVR3_ARATH4, ., 1, ., 9, 9, ., 1, 30.51520.92550.5143yesN/A
Q0E2Y1UVR3_ORYSJ4, ., 1, ., 9, 9, ., 1, 30.51010.91260.5117yesN/A
Q16526CRY1_HUMANNo assigned EC number0.72220.96760.5102yesN/A
Q8QG61CRY1_CHICKNo assigned EC number0.72220.96760.4814yesN/A
P97784CRY1_MOUSENo assigned EC number0.71890.96760.4933yesN/A
Q32Q86CRY1_RATNo assigned EC number0.72220.96760.5085yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 3e-74
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 6e-34
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 4e-29
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 3e-28
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 5e-21
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 5e-13
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information 
 Score =  229 bits (585), Expect = 3e-74
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 12/224 (5%)

Query: 93  GGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNK 152
           GGE  A++RLE  L+ +  +A + + +  P       + LSP+L FG +S R  Y  + K
Sbjct: 1   GGEKAALKRLESFLKER--LADYAKDRDDP--AADGTSRLSPYLHFGEISPRQVYQAVRK 56

Query: 153 LYKRIKKAPPPLSLH---GQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNM---EA 206
                 +            +L+WREF+      NP+ +R   N     +PW  +      
Sbjct: 57  AQGDSPEGGAKQGAEAFLSELIWREFYIQLLYHNPDLERENLNDAYDGLPWAKDRPDEYL 116

Query: 207 LAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLL 266
           L  W   +TG+P +DA M QLR+ GW+H+  R  VA FLT+  L + W EG + F E L+
Sbjct: 117 LEAWEEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLTK-KLLIDWREGEEYFAETLI 175

Query: 267 DADWSVNAGMWMWLSCS-SFFQQFFHCYCPVKFGRKADPNGDFI 309
           DAD + N G W W + + +    +F  + PVK   K DPNG++I
Sbjct: 176 DADPASNNGGWQWQAGTGTDAAPYFRIFNPVKQSDKFDPNGEYI 219

Length = 276
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
KOG0133|consensus531 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.96
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-84  Score=618.77  Aligned_cols=290  Identities=26%  Similarity=0.456  Sum_probs=244.1

Q ss_pred             CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCCCCCCCccCCCCCccccC
Q psy4171           1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELG   80 (309)
Q Consensus         1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~lg   80 (309)
                      .||.+++|+|++|++|++|.+.. |++|+|||+|++.|........|.+.|.  .+........  .......|+  .+ 
T Consensus       118 ~gi~~~~~~d~~l~~p~~~~t~~-~~~y~vfT~F~k~~~~~~~~~~~~~~p~--~~~~~~~~~~--~~~~~~~P~--~~-  189 (461)
T COG0415         118 VGIAVHSFWDALLHEPGEVRTGS-GEPYKVFTPFYKAWRDRLRILRPVPAPD--VLDALRDEEP--PPEEISLPD--FS-  189 (461)
T ss_pred             cCceEEEeccccccCHhhccCCC-CCCccccchHHHHHHHhcccCCCCCCcc--hhcccccccc--CcccccCCc--cc-
Confidence            38999999999999999998866 7999999999999877633222332221  1110000000  000112222  00 


Q ss_pred             CCcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhccC
Q psy4171          81 FDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKA  160 (309)
Q Consensus        81 ~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~  160 (309)
                          ......|+|||++|+++|++|+.++  +.+|++.||.|.  .++||+|||||++|+||||+||+++.+....  .+
T Consensus       190 ----~~~~~~~~~Ge~aA~~~l~~F~~~~--l~~Y~~~Rd~p~--~~~TS~LSpyL~~G~IS~r~v~~~~~~~~~~--~~  259 (461)
T COG0415         190 ----KFDVLLFTGGEKAALARLQDFLAEG--LDDYERTRDFPA--LDGTSRLSPYLAFGVISPREVYAALLAAESD--AR  259 (461)
T ss_pred             ----cccccCCCchHHHHHHHHHHHHHHH--HHHHHHhcCCcc--cccccccCHHHHcCCcCHHHHHHHHHHhhhc--cc
Confidence                0113468999999999999999988  799999999998  7899999999999999999999999886643  34


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhCCcc-cccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHH
Q psy4171         161 PPPLSLHGQLLWREFFYCAATRNPNF-DRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH  239 (309)
Q Consensus       161 ~~~~~~~~eL~WRef~~~~~~~~p~~-~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~  239 (309)
                      +++++|++||+|||||++++.++|++ ...+..+....++|.++++.|++|++|+|||||||||||||++||||||||||
T Consensus       260 ~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~~~~~~~~w~~~~~~f~aW~~G~TGyPIVDA~MRqL~~TG~MHNR~RM  339 (461)
T COG0415         260 EGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWEDNPAHFQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRM  339 (461)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCccccCHHHHHHHhcCCCCCccccHHHHHHHHhCCcchHHHH
Confidence            67889999999999999999999998 66677888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccC-CCCccccccChhhhhhhcCCCCCCC
Q psy4171         240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSS-FFQQFFHCYCPVKFGRKADPNGDFI  309 (309)
Q Consensus       240 ~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~-~~~~~~r~~np~~q~~~~Dp~g~yi  309 (309)
                      +||||||| +|.||||+|++||+++|||||+|+|+|||||+||++ |..||||||||++|++||||+|.||
T Consensus       340 ivAsFL~k-~L~IdWR~GE~~F~~~LiD~D~asN~ggWQW~AstG~Da~pyfRiFNp~~Q~~kfDp~g~fI  409 (461)
T COG0415         340 IVASFLTK-DLLIDWREGEKYFMRQLIDGDPASNNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEFI  409 (461)
T ss_pred             HHHHHHHH-hcCCCHHHHHHHHHHhccCCCcccCCCCeeEEeccCCCCCcceeccCHHHHHhhcCCCcccH
Confidence            99999999 999999999999999999999999999999999765 6779999999999999999999998

>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 2e-85
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 1e-84
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 3e-84
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 5e-80
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 2e-52
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 2e-26
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 2e-26
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 1e-23
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 1e-23
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 8e-23
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 3e-18
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 5e-17
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 1e-16
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 9e-12
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 1e-08
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/310 (49%), Positives = 203/310 (65%), Gaps = 8/310 (2%)
Query: 5   IEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLR 64
           +E   + ++ +   +I KN GK P+TY +F  IV ++  P     P     ++   TP +
Sbjct: 156 VETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEK---LKNMPTPPK 212
Query: 65  DDHDEK----YGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKM 120
           D+ ++K    Y  PT+++L    E L P  + GGETEA+RR+E  L+ + WVA F +P  
Sbjct: 213 DEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNT 272
Query: 121 TPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI-KKAPPPLSLHGQLLWREFFYCA 179
            P SL  S T LSP+L+FGCLS RLF   L ++ KR  K + PP+SL GQL+WREF+Y  
Sbjct: 273 APNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTV 332
Query: 180 ATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH 239
           A   PNFDRMLGN  C+QIPW  + + L  W + +TG+P+IDAIM QLR+EGWIHHLARH
Sbjct: 333 AAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARH 392
Query: 240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFG 299
           AVACFLTRGDLW+SWEEG ++F++LLLD DW++NAG WMWLS           Y PV FG
Sbjct: 393 AVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFG 452
Query: 300 RKADPNGDFI 309
           +K DP G +I
Sbjct: 453 KKTDPQGHYI 462
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-131
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 1e-127
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-117
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-103
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 1e-85
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 4e-33
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 6e-32
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 1e-30
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 1e-30
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 3e-30
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 3e-29
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 5e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
 Score =  382 bits (982), Expect = e-131
 Identities = 153/294 (52%), Positives = 195/294 (66%), Gaps = 2/294 (0%)

Query: 18  RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAP-VTPLLVRQATTPLRDDHDEKYGVPTL 76
            +I KN GK P+TY +F  IV ++  P     P     +       +       Y  PT+
Sbjct: 169 LVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTM 228

Query: 77  EELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFL 136
           ++L    E L P  + GGETEA+RR+E  L+ + WVA F +P   P SL  S T LSP+L
Sbjct: 229 KQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYL 288

Query: 137 RFGCLSTRLFYHDLNKLYKRIKKA-PPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPIC 195
           +FGCLS RLF   L ++ KR  K   PP+SL GQL+WREF+Y  A   PNFDRMLGN  C
Sbjct: 289 KFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348

Query: 196 VQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWE 255
           +QIPW  + + L  W + +TG+P+IDAIM QLR+EGWIHHLARHAVACFLTRGDLW+SWE
Sbjct: 349 MQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWE 408

Query: 256 EGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
           EG ++F++LLLD DW++NAG WMWLS S+FF Q+F  Y PV FG+K DP G +I
Sbjct: 409 EGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYI 462
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 309
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 2e-32
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 3e-28
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 6e-25
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 3e-24
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 4e-24
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 8e-05
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score =  119 bits (298), Expect = 2e-32
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 2/219 (0%)

Query: 91  WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDL 150
           ++GGET  + RL+ +      +  +   +        S +  SP+L  GCLS R  Y ++
Sbjct: 8   FQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYS-SKFSPWLALGCLSPRFIYQEV 66

Query: 151 NKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKW 210
            +  +          L  +LLWR+FF   A +  N     G  +    PW  +      W
Sbjct: 67  KRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELW 126

Query: 211 ANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADW 270
            + QTG+P +DA M +L   G++ +  R  VA FL +    + W  G + F+  L+D D 
Sbjct: 127 RSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNL-GIDWRWGAEWFESCLIDYDV 185

Query: 271 SVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
             N G W + +      + F  +   K  ++ DP G ++
Sbjct: 186 CSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL 224
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 98.57
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 98.3
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 98.1
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 97.83
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 96.36
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=100.00  E-value=5.7e-70  Score=498.38  Aligned_cols=220  Identities=26%  Similarity=0.475  Sum_probs=196.7

Q ss_pred             CCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhccCCCchhHH
Q psy4171          88 PPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLH  167 (309)
Q Consensus        88 ~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~~~~~~~~  167 (309)
                      ...|+|||++|+++|++||+++..+.+|++.||.+.. .++||+|||||++||||||+|++++++.........+.+.|+
T Consensus         5 ~~~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~Rn~~~~-~~~~S~LSPyL~~G~LS~rev~~~~~~~~~~~~~~~~~~~~~   83 (279)
T d1np7a1           5 VLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVG-ADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLI   83 (279)
T ss_dssp             SCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHHHhcccchhhhhHhcCCCCC-CCCccccCHHHcCCccCHHHHHHHHHHHhhcccccchHHHHH
Confidence            3469999999999999999654348999999986442 578999999999999999999999987665433344567899


Q ss_pred             HHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHhh
Q psy4171         168 GQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTR  247 (309)
Q Consensus       168 ~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~  247 (309)
                      +||+|||||++++.++|.....+..+.+..++|..+++.+++|++|+||+||||||||||++|||||||+|||||||||+
T Consensus        84 ~~l~WRef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~~Hn~~Rm~vasfl~~  163 (279)
T d1np7a1          84 FELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK  163 (279)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhhcchhhhhccccchhhhccccccccchHHHHHHHHHHHHHccccHHHHHHHHHHHHh
Confidence            99999999999999988866666677788899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171         248 GDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI  309 (309)
Q Consensus       248 ~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi  309 (309)
                       +|+|||+.|++||+++|||||+++|++||||+||++.+..++|+|||++|++||||+|+||
T Consensus       164 -~l~i~W~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~r~~np~~q~~~~Dp~g~~i  224 (279)
T d1np7a1         164 -NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL  224 (279)
T ss_dssp             -TTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHH
T ss_pred             -cceeccccchHHHHHHHHhcChhhhhHHhhhhhhhccccccccccCCcchHhhcCCCHHHH
Confidence             9999999999999999999999999999999998765544578999999999999999997
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure