Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 61
smart00584 165
smart00584, TLDc, domain in TBC and LysM domain co
2e-20
pfam07534 136
pfam07534, TLD, TLD
1e-11
COG5142 212
COG5142, OXR1, Oxidation resistance protein [DNA r
7e-11
>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing proteins
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Score = 78.1 bits (193), Expect = 2e-20
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP-QQDFVVKTLECWAF 60
Y+I G +SL IG G G FGLW+D DL G S C T+GN PLS Q+DF++ +E W F
Sbjct: 105 YYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLILDIEVWGF 164
>gnl|CDD|219457 pfam07534, TLD, TLD
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Score = 54.6 bits (132), Expect = 1e-11
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 NNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP-QQDFVVKTLECWAF 60
L G G GKF LW+D DL G S C T+GN PLS Q+ F + LE W
Sbjct: 82 ATSGLGFG-GGGKFALWIDSDLEFGYSRHCGTFGNPPLSGSQERFKILDLEVWGL 135
This domain is predicted to be an enzyme and is often found associated with pfam01476. Length = 136
>gnl|CDD|227471 COG5142, OXR1, Oxidation resistance protein [DNA replication, recombination, and repair]
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Score = 54.1 bits (130), Expect = 7e-11
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 3 FIKGNN-------ESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFV-VKT 54
G + L+ G G G++GL +D L G S P T+GN LS + F +
Sbjct: 146 ISGGKGFGIYCTPDFLAFGCGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFRIVY 205
Query: 55 LECW 58
LE W
Sbjct: 206 LELW 209
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG2372|consensus
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Probab=99.93 E-value=5.7e-27 Score=158.91 Aligned_cols=61 Identities=54% Similarity=1.154 Sum_probs=59.4
Q ss_pred CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI 61 (61)
Q Consensus 1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~ 61 (61)
+||++|++++|+||||+|+||||||++|.+|.|+||+||+|.+|+++++|.|+.||||+|+
T Consensus 181 ~f~i~c~~dfLa~G~GgGRfgLwLD~dL~~G~S~~ceTFgN~~Ls~~qdF~Iq~lElW~f~ 241 (241)
T KOG2372|consen 181 SFFIYCDKDFLAFGGGGGRFGLWLDGDLLHGSSHPCETFGNEPLSDKQDFIIQDLELWGFE 241 (241)
T ss_pred ceEEEechhHhhhcCCCCceEEEecccccccccCCCcccCCcccCCcCceEEEEEEEEeeC
Confidence 5899999999999999999999999999999999999999999999999999999999985
>smart00584 TLDc domain in TBC and LysM domain containing proteins
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Probab=99.83 E-value=1.2e-20 Score=120.39 Aligned_cols=59 Identities=53% Similarity=1.135 Sum_probs=56.4
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCC-CCCeEEeEEEEEEE
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP-QQDFVVKTLECWAF 60 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~-~~~F~i~~lEvW~~ 60 (61)
+|+++++++|++|||.|+++||||++|.+|.|.+|+||+||+|+. +++|+|.+||||++
T Consensus 105 ~~~~~~~~~~~~Ggg~g~~~l~id~~l~~g~s~~~~tf~~~~L~~~~~~f~I~~iEVw~~ 164 (165)
T smart00584 105 YYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLILDIEVWGF 164 (165)
T ss_pred EEEecCCCeEeecCCCCceeEEEehhhCCeEeCCCCCcCCccccCCCCCEEEEEEEEEec
Confidence 799999999999999878999999999999999999999999994 78999999999997
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
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Probab=99.83 E-value=6.2e-21 Score=126.45 Aligned_cols=60 Identities=35% Similarity=0.638 Sum_probs=56.7
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCC-eEEeEEEEEEEC
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQD-FVVKTLECWAFI 61 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~-F~i~~lEvW~~~ 61 (61)
+=+||++++|+||||+|+||||||+.|.+|.|+||+||.|.+|+++++ |.|..||||.++
T Consensus 152 f~iYCt~~FlafG~g~grygLl~d~sLl~g~S~p~~tfgN~~Ls~~g~~f~Iv~lElW~v~ 212 (212)
T COG5142 152 FGIYCTPDFLAFGCGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFRIVYLELWLVQ 212 (212)
T ss_pred eEEEEchHHhhhcCCCCcEEEEecCcccccccCCCccccccccccCCCceEEEEEEEEeeC
Confidence 458999999999999999999999999999999999999999999986 599999999874
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins []
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Probab=99.61 E-value=1.7e-15 Score=91.70 Aligned_cols=59 Identities=41% Similarity=0.846 Sum_probs=45.8
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCC--CCCCeEEeEEEEEEE
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLS--PQQDFVVKTLECWAF 60 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls--~~~~F~i~~lEvW~~ 60 (61)
.+++++..+|+||++...++||||.++.+|++.+|.||++|+|+ ..++|+|..||||++
T Consensus 78 ~~~~~~~~~~~fG~~~~~~~l~i~~~~~~~~~~~~~ty~~~~l~~~~~~~f~i~~iEV~~~ 138 (139)
T PF07534_consen 78 NYINCNNQGLGFGGGSNGFDLWIDSDFNSGSSSHSETYGNPPLSNDGQESFDIDEIEVWGL 138 (139)
T ss_dssp --EEEETTEEEES-SSSS-SEEEETTS-EEEE--BTTTTB--SS--SSSEEEEEEEEEEE-
T ss_pred eeeeccCCcceEeecCCceEEEEeCCCCcEEEeCCCccCCCcccCCCCCCcEEEEEEEEEE
Confidence 47888899999999965689999999999999999999999999 678999999999986
>KOG2801|consensus
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Probab=99.52 E-value=9.6e-16 Score=109.88 Aligned_cols=59 Identities=37% Similarity=0.948 Sum_probs=54.6
Q ss_pred CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI 61 (61)
Q Consensus 1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~ 61 (61)
++||.+..++|++|||+|. |||||.||.+|++..|+||+|.||+ +++|.|..+|.|+|.
T Consensus 496 smfmaggsdclivgggggq-alyidgdlnrgrtshcdtfnnqplc-senfliaaveawgfq 554 (559)
T KOG2801|consen 496 SMFMAGGSDCLIVGGGGGQ-ALYIDGDLNRGRTSHCDTFNNQPLC-SENFLIAAVEAWGFQ 554 (559)
T ss_pred HHHhcCCCceEEEcCCCce-eEEecccccCCccccccccCCCccc-hhhHHHHHHHHhcCC
Confidence 3689999999999999765 9999999999999999999999999 578999999999984
>KOG2557|consensus
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Probab=99.51 E-value=1.2e-14 Score=104.45 Aligned_cols=54 Identities=33% Similarity=0.650 Sum_probs=50.3
Q ss_pred CCCeEEEccCCCCceEEEeCccCCceeec-CcCCCCCCCCCCCCeEEeEEEEEEE
Q psy4173 7 NNESLSIGAGDGKFGLWLDGDLYQGRSEP-CSTYGNEPLSPQQDFVVKTLECWAF 60 (61)
Q Consensus 7 ~~~~l~iGgg~g~~~l~id~~l~~G~S~~-c~TF~n~~Ls~~~~F~i~~lEvW~~ 60 (61)
-|++|.|||...+||||||.++..|+|.+ |+||++|.|+++++|+|..+|||++
T Consensus 324 iPNGLGmGGq~n~fgL~Id~sFg~Gqs~e~cTty~spqLSk~~~fqi~~iEvWav 378 (427)
T KOG2557|consen 324 IPNGLGMGGQINHFGLFIDASFGQGQSFECCTTYESPQLSKTSRFQIEVIEVWAV 378 (427)
T ss_pred CCCccccCcccceeeEEEEeecCCCccccccccCCCccccccccccceEEEEEec
Confidence 48999999999999999999999999995 5778899999999999999999986
>KOG4636|consensus
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Probab=91.84 E-value=0.21 Score=37.13 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEE
Q psy4173 7 NNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60 (61)
Q Consensus 7 ~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~ 60 (61)
.+.+|.+|+-.|.--|.||++|.+=.- .--.-.|.++|||++
T Consensus 386 ~p~Gl~fg~tlgne~i~idedF~kItv------------lpveA~ildIEvWGc 427 (483)
T KOG4636|consen 386 SPYGLSFGNTLGNEEIKIDEDFDKITV------------LPVEAEILDIEVWGC 427 (483)
T ss_pred CccceecCCCCCCceeeeccchhhccc------------cchhcceeeEEEecc
Confidence 355566666555555666666644111 111235899999985
Homologous Structure Domains