Psyllid ID: psy4173


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-
MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
cEEEEEcccEEEEccccccEEEEEEcccccEEEEccccccccccccccccEEEEEEEEEEc
cEEEEccccEEEEccccccEEEEEcccccccccccccccccccccccccEEEEEEEEEEEc
myfikgnneslsigagdgkfglwldgdlyqgrsepcstygneplspqqdFVVKTLECWAFI
myfikgnneslsigagDGKFGLWLDGDLYQGRSEPCSTYGneplspqqdfVVKTLECWAFI
MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
**********LSIGAGDGKFGLWLDGDLYQGRS**C*TY********QDFVVKTLECWAF*
MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query61 2.2.26 [Sep-21-2011]
A5PKL1872 Oxidation resistance prot yes N/A 0.983 0.068 0.566 2e-14
A8KBE0870 Oxidation resistance prot yes N/A 0.983 0.068 0.583 2e-14
Q8N573874 Oxidation resistance prot yes N/A 0.983 0.068 0.566 2e-14
Q4KMM3866 Oxidation resistance prot no N/A 0.983 0.069 0.566 3e-14
Q4V8B0839 Oxidation resistance prot yes N/A 0.983 0.071 0.566 6e-14
B4F6Q9857 Oxidation resistance prot N/A N/A 0.983 0.070 0.566 7e-14
Q0IID2217 Uncharacterized protein C yes N/A 0.967 0.271 0.525 1e-13
A2ACG1198 Uncharacterized protein C no N/A 0.967 0.297 0.525 2e-13
A0PJX2215 Uncharacterized protein C no N/A 0.934 0.265 0.526 4e-13
Q874Z5346 Oxidation resistance prot yes N/A 0.934 0.164 0.5 2e-09
>sp|A5PKL1|OXR1_BOVIN Oxidation resistance protein 1 OS=Bos taurus GN=OXR1 PE=2 SV=2 Back     alignment and function desciption
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 1   MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60
           M+FIKG+ +SL+ G G G+F LWLDGDLY GRS  C T+GN  LS ++DF ++ +E WAF
Sbjct: 812 MFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNHTLSKKEDFCIQDIEIWAF 871




May be involved in protection from oxidative damage.
Bos taurus (taxid: 9913)
>sp|A8KBE0|OXR1_XENTR Oxidation resistance protein 1 OS=Xenopus tropicalis GN=oxr1 PE=2 SV=2 Back     alignment and function description
>sp|Q8N573|OXR1_HUMAN Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KMM3|OXR1_MOUSE Oxidation resistance protein 1 OS=Mus musculus GN=Oxr1 PE=1 SV=3 Back     alignment and function description
>sp|Q4V8B0|OXR1_RAT Oxidation resistance protein 1 OS=Rattus norvegicus GN=Oxr1 PE=1 SV=3 Back     alignment and function description
>sp|B4F6Q9|OXR1_XENLA Oxidation resistance protein 1 OS=Xenopus laevis GN=oxr1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IID2|CT118_BOVIN Uncharacterized protein C20orf118 homolog OS=Bos taurus PE=2 SV=1 Back     alignment and function description
>sp|A2ACG1|CT118_MOUSE Uncharacterized protein C20orf118 homolog OS=Mus musculus GN=Gm1332 PE=3 SV=1 Back     alignment and function description
>sp|A0PJX2|CT118_HUMAN Uncharacterized protein C20orf118 OS=Homo sapiens GN=C20orf118 PE=2 SV=1 Back     alignment and function description
>sp|Q874Z5|OXR1_PODAS Oxidation resistance protein 1 OS=Podospora anserina GN=OXR1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
350409606 1240 PREDICTED: hypothetical protein LOC10074 1.0 0.049 0.885 4e-28
340713835 1240 PREDICTED: hypothetical protein LOC10064 1.0 0.049 0.885 4e-28
383863687 1246 PREDICTED: uncharacterized protein LOC10 1.0 0.048 0.868 9e-28
380024963 1246 PREDICTED: uncharacterized protein LOC10 1.0 0.048 0.868 1e-27
328781794 1247 PREDICTED: hypothetical protein LOC40988 1.0 0.048 0.868 1e-27
189237894 978 PREDICTED: similar to nucleolar protein 1.0 0.062 0.868 2e-27
270006695 1119 hypothetical protein TcasGA2_TC013055 [T 1.0 0.054 0.868 2e-27
345479969 1276 PREDICTED: hypothetical protein LOC10012 1.0 0.047 0.868 3e-27
24644177 1055 mustard, isoform K [Drosophila melanogas 1.0 0.057 0.852 2e-26
45553247 1033 mustard, isoform G [Drosophila melanogas 1.0 0.059 0.852 2e-26
>gi|350409606|ref|XP_003488791.1| PREDICTED: hypothetical protein LOC100744969 [Bombus impatiens] Back     alignment and taxonomy information
 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 1    MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60
            +YFIKGNNESL+IGAGDGKFGLWLDGDLYQGRS+ CSTYGNEPL+P++DFVVKTLECWAF
Sbjct: 1180 LYFIKGNNESLAIGAGDGKFGLWLDGDLYQGRSQSCSTYGNEPLAPREDFVVKTLECWAF 1239

Query: 61   I 61
            I
Sbjct: 1240 I 1240




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713835|ref|XP_003395441.1| PREDICTED: hypothetical protein LOC100646293 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383863687|ref|XP_003707311.1| PREDICTED: uncharacterized protein LOC100874943 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380024963|ref|XP_003696254.1| PREDICTED: uncharacterized protein LOC100869237 [Apis florea] Back     alignment and taxonomy information
>gi|328781794|ref|XP_393372.4| PREDICTED: hypothetical protein LOC409882 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|189237894|ref|XP_967175.2| PREDICTED: similar to nucleolar protein c7b [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270006695|gb|EFA03143.1| hypothetical protein TcasGA2_TC013055 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345479969|ref|XP_001604722.2| PREDICTED: hypothetical protein LOC100121136 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|24644177|ref|NP_730911.1| mustard, isoform K [Drosophila melanogaster] gi|23170436|gb|AAN13271.1| mustard, isoform K [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|45553247|ref|NP_996151.1| mustard, isoform G [Drosophila melanogaster] gi|21428734|gb|AAM50027.1| SD08996p [Drosophila melanogaster] gi|45446374|gb|AAN13276.2| mustard, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
FB|FBgn00135761314 mtd "mustard" [Drosophila mela 1.0 0.046 0.852 4.2e-25
UNIPROTKB|E9PLW2119 OXR1 "Oxidation resistance pro 0.983 0.504 0.566 1.8e-16
UNIPROTKB|F1P081765 OXR1 "Uncharacterized protein" 0.983 0.078 0.566 9.7e-16
ZFIN|ZDB-GENE-030131-2438841 si:dkeyp-84f11.5 "si:dkeyp-84f 0.983 0.071 0.583 1.4e-15
UNIPROTKB|F1MR28771 OXR1 "Oxidation resistance pro 0.983 0.077 0.566 2.6e-15
RGD|621857839 Oxr1 "oxidation resistance 1" 0.983 0.071 0.566 3e-15
UNIPROTKB|Q4V8B0839 Oxr1 "Oxidation resistance pro 0.983 0.071 0.566 3e-15
UNIPROTKB|F1S1E9841 OXR1 "Uncharacterized protein" 0.983 0.071 0.566 3e-15
MGI|MGI:2179326866 Oxr1 "oxidation resistance 1" 0.983 0.069 0.566 3.1e-15
UNIPROTKB|A5PKL1872 OXR1 "Oxidation resistance pro 0.983 0.068 0.566 3.2e-15
FB|FBgn0013576 mtd "mustard" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 299 (110.3 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 52/61 (85%), Positives = 58/61 (95%)

Query:     1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60
             MYFIKGN ESLSIGAGDG+FGLWLDGDL QGRS+ CSTYGNEPL+PQ+DFV+KTLECWAF
Sbjct:  1254 MYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPLAPQEDFVIKTLECWAF 1313

Query:    61 I 61
             +
Sbjct:  1314 V 1314




GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0050829 "defense response to Gram-negative bacterium" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0002218 "activation of innate immune response" evidence=IMP
UNIPROTKB|E9PLW2 OXR1 "Oxidation resistance protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P081 OXR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2438 si:dkeyp-84f11.5 "si:dkeyp-84f11.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MR28 OXR1 "Oxidation resistance protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621857 Oxr1 "oxidation resistance 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4V8B0 Oxr1 "Oxidation resistance protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1E9 OXR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2179326 Oxr1 "oxidation resistance 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5PKL1 OXR1 "Oxidation resistance protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4V8B0OXR1_RATNo assigned EC number0.56660.98360.0715yesN/A
Q4I8S2OXR1_GIBZENo assigned EC number0.53060.78680.1472yesN/A
A5PKL1OXR1_BOVINNo assigned EC number0.56660.98360.0688yesN/A
Q8N573OXR1_HUMANNo assigned EC number0.56660.98360.0686yesN/A
Q0IID2CT118_BOVINNo assigned EC number0.52540.96720.2718yesN/A
A8KBE0OXR1_XENTRNo assigned EC number0.58330.98360.0689yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
smart00584165 smart00584, TLDc, domain in TBC and LysM domain co 2e-20
pfam07534136 pfam07534, TLD, TLD 1e-11
COG5142212 COG5142, OXR1, Oxidation resistance protein [DNA r 7e-11
>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing proteins Back     alignment and domain information
 Score = 78.1 bits (193), Expect = 2e-20
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 2   YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP-QQDFVVKTLECWAF 60
           Y+I G  +SL IG G G FGLW+D DL  G S  C T+GN PLS  Q+DF++  +E W F
Sbjct: 105 YYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLILDIEVWGF 164


Length = 165

>gnl|CDD|219457 pfam07534, TLD, TLD Back     alignment and domain information
>gnl|CDD|227471 COG5142, OXR1, Oxidation resistance protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 61
KOG2372|consensus241 99.93
smart00584165 TLDc domain in TBC and LysM domain containing prot 99.83
COG5142212 OXR1 Oxidation resistance protein [DNA replication 99.83
PF07534139 TLD: TLD; InterPro: IPR006571 TLDc is a domain of 99.61
KOG2801|consensus559 99.52
KOG2557|consensus427 99.51
KOG4636|consensus483 91.84
>KOG2372|consensus Back     alignment and domain information
Probab=99.93  E-value=5.7e-27  Score=158.91  Aligned_cols=61  Identities=54%  Similarity=1.154  Sum_probs=59.4

Q ss_pred             CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173           1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI   61 (61)
Q Consensus         1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~   61 (61)
                      +||++|++++|+||||+|+||||||++|.+|.|+||+||+|.+|+++++|.|+.||||+|+
T Consensus       181 ~f~i~c~~dfLa~G~GgGRfgLwLD~dL~~G~S~~ceTFgN~~Ls~~qdF~Iq~lElW~f~  241 (241)
T KOG2372|consen  181 SFFIYCDKDFLAFGGGGGRFGLWLDGDLLHGSSHPCETFGNEPLSDKQDFIIQDLELWGFE  241 (241)
T ss_pred             ceEEEechhHhhhcCCCCceEEEecccccccccCCCcccCCcccCCcCceEEEEEEEEeeC
Confidence            5899999999999999999999999999999999999999999999999999999999985



>smart00584 TLDc domain in TBC and LysM domain containing proteins Back     alignment and domain information
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [] Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>KOG2557|consensus Back     alignment and domain information
>KOG4636|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
4acj_A167 Crystal Structure Of The Tldc Domain Of Oxidation R 9e-16
>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation Resistance Protein 2 From Zebrafish Length = 167 Back     alignment and structure

Iteration: 1

Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 46/60 (76%) Query: 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60 ++FIKG+ +SL+ G G G+FGLWLDGDLY GR+ C T+GN LS ++DF V+ +E W+F Sbjct: 107 LFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSF 166

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 2e-16
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Length = 167 Back     alignment and structure
 Score = 67.5 bits (164), Expect = 2e-16
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 1   MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60
           ++FIKG+ +SL+ G G G+FGLWLDGDLY GR+  C T+GN  LS ++DF V+ +E W+F
Sbjct: 107 LFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSF 166


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query61
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 99.94
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Back     alignment and structure
Probab=99.94  E-value=4.8e-27  Score=150.08  Aligned_cols=61  Identities=54%  Similarity=1.172  Sum_probs=59.0

Q ss_pred             CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173           1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI   61 (61)
Q Consensus         1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~   61 (61)
                      .+||+|++++|+||||+|++|||||++|.+|+|.+|+||+||||+++++|+|++||||+|+
T Consensus       107 ~~f~~~~~~~l~~Ggg~g~~~L~id~~l~~G~s~~c~Tf~n~~L~~~~~F~i~~vEvW~~~  167 (167)
T 4acj_A          107 LFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSFE  167 (167)
T ss_dssp             CCCEEEETTEEEESCSSSSCSEEEETTSCEEEECCBTTTTBCCSSSSSEEEEEEEEEEECC
T ss_pred             ceEEEeCCCccccCCCCCceEEEEeCCCCCEEeCCCCCCCCcccCCCCceEEEEEEEEEEC
Confidence            4799999999999999999999999999999999999999999999999999999999986




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00