Psyllid ID: psy4197

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPLSMAP
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEEcccHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEccccHHHHHHHHccccccEEEEEccEEEEccEEEEEEEEEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEccccccccccccc
Coil and Loop (DISEMBL)
mgvgdkarptIVRSSIDVACSCTVVEFLTEmgcrmdfeyisrgymfRKGRMKILVSKIFkmsqgkpsdsgvepisqSYLVELsilapggqdviGEDMKAFAEQLKPLVQLekidykrlplsmap
Flexible Loop (DISEMBL)
mgvgdkarptivrssidvacsCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMsqgkpsdsgvEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLkplvqlekidykrlplsmap
Low Complexity Region (SEG)
MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPLSMAP
Disordered region (IsUnstruct)
**********IVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFK***************QSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDY*********
Disordered Region (DISOPRED)
******A*PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFK**************SQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPL****
Disordered Region (DISEMBL)
MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKM***********PISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPLSMAP
Disordered Region (DISPRO)
*****KARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPLSMAP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q17IN5	215	Mediator of RNA polymeras	N/A	N/A	0.879	0.506	0.706	3e-43
Q7QGX9	211	Mediator of RNA polymeras	yes	N/A	0.870	0.511	0.689	2e-41
Q9XZT1	217	Mediator of RNA polymeras	yes	N/A	0.919	0.525	0.675	1e-40
Q7T3H7	208	Mediator of RNA polymeras	yes	N/A	0.927	0.552	0.577	6e-33
Q9BUE0	208	Mediator of RNA polymeras	yes	N/A	0.927	0.552	0.568	2e-32
Q0VCD4	208	Mediator of RNA polymeras	yes	N/A	0.927	0.552	0.560	4e-32
Q9CZ82	208	Mediator of RNA polymeras	yes	N/A	0.927	0.552	0.551	9e-32
Q28GE1	208	Mediator of RNA polymeras	yes	N/A	0.919	0.548	0.556	1e-31
Q6DD39	208	Mediator of RNA polymeras	N/A	N/A	0.919	0.548	0.547	4e-31
Q966M5	232	Mediator of RNA polymeras	yes	N/A	0.967	0.517	0.373	3e-14

>sp|Q17IN5|MED18_AEDAE Mediator of RNA polymerase II transcription subunit 18 OS=Aedes aegypti GN=MED18 PE=3 SV=1

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 98/116 (84%), Gaps = 7/116 (6%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GD+ RPT+VRSS+D+AC+  VV+FLTEMG R+DFEYI++GYMFRKGRMK+ VSKIFK++
Sbjct: 103 LGDRNRPTLVRSSLDIACTPHVVDFLTEMGFRVDFEYITKGYMFRKGRMKVTVSKIFKVN 162

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                    EPISQSYLVELS+LAP GQDVI +DM+ FAEQLKPLVQLEKIDYKR 
Sbjct: 163 SS-------EPISQSYLVELSVLAPTGQDVIADDMRIFAEQLKPLVQLEKIDYKRF 211

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q7QGX9|MED18_ANOGA Mediator of RNA polymerase II transcription subunit 18 OS=Anopheles gambiae GN=MED18 PE=3 SV=3

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 94/116 (81%), Gaps = 8/116 (6%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GD+ RPT+VRSS+D+AC+  V++FLTEMG R+DFEY ++GYMFRKGRMKI VSKI K  
Sbjct: 100 LGDRTRPTLVRSSLDIACTPHVIDFLTEMGFRLDFEYSTKGYMFRKGRMKITVSKILK-- 157

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +  EPISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKR 
Sbjct: 158 ------NMTEPISQSYLVELSVLAPKGQDAIAEDMRIFAEQLKPLVQLEKIDYKRF 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9XZT1|MED18_DROME Mediator of RNA polymerase II transcription subunit 18 OS=Drosophila melanogaster GN=MED18 PE=1 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 95/114 (83%)

Query: 5   DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQG 64
           D  RPT+VRS +D AC+  ++EFLTEMG R++FEYI++GYMFRKGRMKI VSK+ K+  G
Sbjct: 100 DLRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPG 159

Query: 65  KPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           K  D   EPISQSY+VELS++AP GQ+ +GE+M+ FAEQLKPLVQLEKIDYKRL
Sbjct: 160 KQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL 213

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Drosophila melanogaster (taxid: 7227)

>sp|Q7T3H7|MED18_DANRE Mediator of RNA polymerase II transcription subunit 18 OS=Danio rerio GN=med18 PE=2 SV=1

 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           VGDK+R  +VR+ +DVA S ++ +FL EMG RMD E++++G +FRKG MK++VSK+ ++ 
Sbjct: 93  VGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGQVFRKGVMKVVVSKLSRVL 152

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
               +D+  EP+S SYLVELS+LAP GQD + EDM++FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEPLSLSYLVELSVLAPAGQDTVSEDMRSFAEQLKPLVHLEKIDPKRL 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q9BUE0|MED18_HUMAN Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 89/116 (76%), Gaps = 1/116 (0%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MKI+V KIF++ 
Sbjct: 93  MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
               +DS  E +S SYLVELS++AP GQD++ +DMK FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q0VCD4|MED18_BOVIN Mediator of RNA polymerase II transcription subunit 18 OS=Bos taurus GN=MED18 PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 89/116 (76%), Gaps = 1/116 (0%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK R  +VR+ +D+A S  + +FL EMG RMD E+++RG++FRKG MKI+V KIF++ 
Sbjct: 93  MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARGHLFRKGIMKIVVYKIFRIL 152

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
               +D+  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q9CZ82|MED18_MOUSE Mediator of RNA polymerase II transcription subunit 18 OS=Mus musculus GN=Med18 PE=2 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 89/116 (76%), Gaps = 1/116 (0%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MK++V KIF++ 
Sbjct: 93  MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKVVVYKIFRIL 152

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
               +DS  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q28GE1|MED18_XENTR Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus tropicalis GN=med18 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 89/115 (77%), Gaps = 1/115 (0%)

Query: 4   GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
           GD++R T+VR+ +D+A S  + EFL EMG RMD E+++RG++FRKG MK+ V K+F++  
Sbjct: 94  GDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVARGHLFRKGVMKVAVYKVFRVLV 153

Query: 64  GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
              ++ G EP+S SYLVELS +AP GQD I ++++ FAEQL+PLVQLEKID KRL
Sbjct: 154 AGAAE-GAEPLSLSYLVELSAVAPAGQDNIADEVRGFAEQLRPLVQLEKIDPKRL 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD39|MED18_XENLA Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus laevis GN=med18 PE=2 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 89/115 (77%), Gaps = 1/115 (0%)

Query: 4   GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
           GD++R T+VR+ +D+A S  + EFL EMG RMD E+++RG++FRKG MK+ V K+F++  
Sbjct: 94  GDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVARGHLFRKGVMKVAVYKVFRVLV 153

Query: 64  GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
              ++ G EP+S SYLVELS +AP GQD I ++++ FAEQL+PLVQLEKID KR+
Sbjct: 154 SGAAE-GAEPLSLSYLVELSAVAPAGQDNIADEVRGFAEQLRPLVQLEKIDPKRV 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q966M5|MED18_CAEEL Mediator of RNA polymerase II transcription subunit 18 OS=Caenorhabditis elegans GN=mdt-18 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 5   DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
           D+  PTIVR  I  +  S  ++ +   +G RMD+EY+++G ++ KG +KIL S +   S+
Sbjct: 105 DQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQGKLWTKGNIKILHSILTSTSR 164

Query: 64  GKPSDSG-VEPISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDY--KRL 118
               DS  ++ +S S LVE+SI  P   + +   + ++ FA+QL PLV +EK+DY  K  
Sbjct: 165 AGTYDSNSIKSVSDSALVEISISLPESAEYMPAAKSLRDFADQLMPLVNMEKVDYWKKMF 224

Query: 119 PLSMAP 124
           P   AP
Sbjct: 225 PAQAAP 230

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
307212781	221	Mediator of RNA polymerase II transcript	0.935	0.524	0.775	9e-48
242009649	227	conserved hypothetical protein [Pediculu	0.919	0.502	0.826	2e-47
332027346	221	Mediator of RNA polymerase II transcript	0.935	0.524	0.767	6e-46
91092028	222	PREDICTED: similar to mediator complex [	0.927	0.518	0.779	1e-45
307187927	221	Mediator of RNA polymerase II transcript	0.935	0.524	0.758	1e-45
383852250	216	PREDICTED: mediator of RNA polymerase II	0.935	0.537	0.758	3e-45
332374508	221	unknown [Dendroctonus ponderosae]	0.935	0.524	0.75	4e-45
48095236	216	PREDICTED: mediator of RNA polymerase II	0.935	0.537	0.758	4e-45
340711191	216	PREDICTED: mediator of RNA polymerase II	0.935	0.537	0.75	9e-45
350405730	216	PREDICTED: mediator of RNA polymerase II	0.935	0.537	0.75	1e-44

>gi|307212781|gb|EFN88452.1| Mediator of RNA polymerase II transcription subunit 18 [Harpegnathos saltator]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 104/116 (89%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSSID+A S TVVEFLTE+GC++DFEYI+RGYMFRKGRMK+ V+KIFKM+
Sbjct: 104 LGDKSRPTIVRSSIDIATSNTVVEFLTELGCKLDFEYIARGYMFRKGRMKVTVTKIFKMN 163

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           QGK    G+EPISQSYLVELS+LAP G D I EDM+ FAEQL+PLVQLEKIDYKRL
Sbjct: 164 QGKMEGGGMEPISQSYLVELSVLAPSGHDAIAEDMRIFAEQLRPLVQLEKIDYKRL 219

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009649|ref|XP_002425595.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509488|gb|EEB12857.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 4   GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
           GDK RPTIVRSSIDV  S TVVEFLTE+GCRMDFEYI +GYMFRKGRMKI VSKIFKM Q
Sbjct: 107 GDKTRPTIVRSSIDVGTSSTVVEFLTELGCRMDFEYIVKGYMFRKGRMKITVSKIFKMGQ 166

Query: 64  GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
            KP ++ VEPISQSYLVELS+LAP GQD I EDM++FAEQLKPLVQLEKIDYKRL
Sbjct: 167 VKPPEN-VEPISQSYLVELSVLAPSGQDAIAEDMRSFAEQLKPLVQLEKIDYKRL 220

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027346|gb|EGI67430.1| Mediator of RNA polymerase II transcription subunit 18 [Acromyrmex echinatior]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 103/116 (88%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSSID+A S TVVEFLTE+GC++DFEY++RGYMFRKGRMKI VSKIFK++
Sbjct: 104 LGDKSRPTIVRSSIDIATSNTVVEFLTELGCKLDFEYVTRGYMFRKGRMKITVSKIFKVN 163

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           QGK  +   E ISQSYLVELS+LAP GQD I EDM+ FAEQL+PLVQLEKIDYKRL
Sbjct: 164 QGKVPEGVPEMISQSYLVELSVLAPSGQDAIAEDMRIFAEQLRPLVQLEKIDYKRL 219

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092028|ref|XP_969359.1| PREDICTED: similar to mediator complex [Tribolium castaneum] gi|270004688|gb|EFA01136.1| hypothetical protein TcasGA2_TC010359 [Tribolium castaneum]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 103/118 (87%), Gaps = 3/118 (2%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK RPT+VRSSID+ACS T+VEFLTE+GCR+DFEYI+RGYMFRKGRMKI VSKIFKM 
Sbjct: 102 LGDKNRPTVVRSSIDMACSSTIVEFLTELGCRVDFEYIARGYMFRKGRMKITVSKIFKMG 161

Query: 63  Q--GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
               KP + GVE ISQSYLVELS+LAP GQD I EDM+ FAEQL+PLVQLEKIDYKRL
Sbjct: 162 SMTSKPGE-GVEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLRPLVQLEKIDYKRL 218

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187927|gb|EFN72840.1| Mediator of RNA polymerase II transcription subunit 18 [Camponotus floridanus]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 103/116 (88%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPT+VRSSID+A S TVVEFLTE+GC++DFEY++RGYMFRKGRMKI VSKIFK++
Sbjct: 104 LGDKSRPTVVRSSIDIATSNTVVEFLTELGCKLDFEYVTRGYMFRKGRMKITVSKIFKVN 163

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           QGK  +   E ISQSYLVELS+LAP GQD I EDM+ FAEQL+PLVQLEKIDYKRL
Sbjct: 164 QGKVPEGVPEMISQSYLVELSVLAPSGQDAIAEDMRIFAEQLRPLVQLEKIDYKRL 219

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852250|ref|XP_003701641.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Megachile rotundata]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 100/116 (86%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSS+D+A S TVV+FLTE+GCR+DFEYI+RGYMFRKGRMK+ VSKIFKM 
Sbjct: 99  LGDKSRPTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMG 158

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           Q       +E ISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKRL
Sbjct: 159 QQGKMPESMEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLKPLVQLEKIDYKRL 214

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374508|gb|AEE62395.1| unknown [Dendroctonus ponderosae]

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 99/116 (85%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK RPT+VRS ID+ACS T++EFLTE+GCR+DFEYI+RGYMFRKGRMK+ VSKIFKM+
Sbjct: 102 MGDKNRPTVVRSCIDMACSSTIIEFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMN 161

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                  GVE ISQSYLVELS+ AP GQD I EDM+ FAEQLKPLVQLEKIDYKRL
Sbjct: 162 GMASKPEGVEAISQSYLVELSVQAPLGQDAIAEDMRVFAEQLKPLVQLEKIDYKRL 217

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48095236|ref|XP_392263.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Apis mellifera] gi|380013802|ref|XP_003690935.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Apis florea]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 100/116 (86%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSS+D+A S TVV+FLTE+GCR+DFEYI+RGYMFRKGRMK+ VSKIFKM 
Sbjct: 99  LGDKSRPTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMG 158

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           Q       +E ISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKRL
Sbjct: 159 QQGKIPESMEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLKPLVQLEKIDYKRL 214

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711191|ref|XP_003394162.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Bombus terrestris]

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 99/116 (85%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSS+D+A S TVV+FLTE+GCR+DFEYI+RGYMFRKGRMK+ VSKIFKM 
Sbjct: 99  LGDKSRPTIVRSSLDIATSSTVVDFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMG 158

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           Q       +E ISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKR 
Sbjct: 159 QQGKIPESMEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLKPLVQLEKIDYKRF 214

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405730|ref|XP_003487531.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Bombus impatiens]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 99/116 (85%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
           +GDK+RPTIVRSS+D+A S TVV+FLTE+GCR+DFEYI+RGYMFRKGRMK+ VSKIFKM 
Sbjct: 99  LGDKSRPTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGYMFRKGRMKVTVSKIFKMG 158

Query: 63  QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
           Q       +E ISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKR 
Sbjct: 159 QQGKIPESMEAISQSYLVELSVLAPSGQDAIAEDMRIFAEQLKPLVQLEKIDYKRF 214

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
FB|FBgn0026873	217	MED18 "Mediator complex subuni	0.919	0.525	0.675	1.1e-37
ZFIN|ZDB-GENE-040426-1276	208	med18 "mediator of RNA polymer	0.927	0.552	0.577	1.4e-30
UNIPROTKB|Q9BUE0	208	MED18 "Mediator of RNA polymer	0.927	0.552	0.568	1.3e-29
UNIPROTKB|J9P4L8	208	MED18 "Uncharacterized protein	0.927	0.552	0.560	2.7e-29
UNIPROTKB|Q0VCD4	208	MED18 "Mediator of RNA polymer	0.927	0.552	0.560	3.4e-29
UNIPROTKB|I3LR60	208	MED18 "Uncharacterized protein	0.927	0.552	0.560	3.4e-29
MGI|MGI:1914469	208	Med18 "mediator of RNA polymer	0.927	0.552	0.551	4.4e-29
WB|WBGene00007018	232	mdt-18 [Caenorhabditis elegans	0.967	0.517	0.373	1.6e-15
DICTYBASE|DDB_G0285713	251	med18 "putative mediator compl	0.830	0.410	0.270	0.00011
TAIR|locus:2041243	219	MED18 "AT2G22370" [Arabidopsis	0.879	0.497	0.256	0.00048

FB|FBgn0026873 MED18 "Mediator complex subunit 18" [Drosophila melanogaster (taxid:7227)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 77/114 (67%), Positives = 95/114 (83%)

Query:     5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQG 64
             D  RPT+VRS +D AC+  ++EFLTEMG R++FEYI++GYMFRKGRMKI VSK+ K+  G
Sbjct:   100 DLRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPG 159

Query:    65 KPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
             K  D   EPISQSY+VELS++AP GQ+ +GE+M+ FAEQLKPLVQLEKIDYKRL
Sbjct:   160 KQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL 213

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IC;IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0016592 "mediator complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;IC

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-040426-1276 med18 "mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 67/116 (57%), Positives = 91/116 (78%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             VGDK+R  +VR+ +DVA S ++ +FL EMG RMD E++++G +FRKG MK++VSK+ ++ 
Sbjct:    93 VGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGQVFRKGVMKVVVSKLSRVL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +D+  EP+S SYLVELS+LAP GQD + EDM++FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDN-TEPLSLSYLVELSVLAPAGQDTVSEDMRSFAEQLKPLVHLEKIDPKRL 207

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9BUE0 MED18 "Mediator of RNA polymerase II transcription subunit 18" [Homo sapiens (taxid:9606)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/116 (56%), Positives = 89/116 (76%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MKI+V KIF++ 
Sbjct:    93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +DS  E +S SYLVELS++AP GQD++ +DMK FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J9P4L8 MED18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/116 (56%), Positives = 89/116 (76%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MKI+V KIF++ 
Sbjct:    93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +DS  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q0VCD4 MED18 "Mediator of RNA polymerase II transcription subunit 18" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/116 (56%), Positives = 89/116 (76%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             +GDK R  +VR+ +D+A S  + +FL EMG RMD E+++RG++FRKG MKI+V KIF++ 
Sbjct:    93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARGHLFRKGIMKIVVYKIFRIL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +D+  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDN-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|I3LR60 MED18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/116 (56%), Positives = 89/116 (76%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MKI+V KIF++ 
Sbjct:    93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIVVYKIFRIL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +DS  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1914469 Med18 "mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/116 (55%), Positives = 89/116 (76%)

Query:     3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
             +GDK R  +VR+ +D+A S  + +FL EMG RMD E++++G++FRKG MK++V KIF++ 
Sbjct:    93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKVVVYKIFRIL 152

Query:    63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
                 +DS  E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct:   153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=ISA;IDA

WB|WBGene00007018 mdt-18 [Caenorhabditis elegans (taxid:6239)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 47/126 (37%), Positives = 74/126 (58%)

Query:     5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
             D+  PTIVR  I  +  S  ++ +   +G RMD+EY+++G ++ KG +KIL S +   S+
Sbjct:   105 DQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQGKLWTKGNIKILHSILTSTSR 164

Query:    64 GKPSDSG-VEPISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDY--KRL 118
                 DS  ++ +S S LVE+SI  P   + +   + ++ FA+QL PLV +EK+DY  K  
Sbjct:   165 AGTYDSNSIKSVSDSALVEISISLPESAEYMPAAKSLRDFADQLMPLVNMEKVDYWKKMF 224

Query:   119 PLSMAP 124
             P   AP
Sbjct:   225 PAQAAP 230

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

DICTYBASE|DDB_G0285713 med18 "putative mediator complex subunit 18" [Dictyostelium discoideum (taxid:44689)]

 Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/111 (27%), Positives = 56/111 (50%)

Query:    11 IVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI-LVSKIFKMSQGKPSDS 69
             ++R+ +D+  S T   +L  +G   D+EY   GY +    + + LV+    ++ G     
Sbjct:   126 MIRNVVDIKSSETFFIYLENLGYVKDYEYFVDGYQYSTYNLSLFLVNHRRVLNDGTKG-- 183

Query:    70 GVEPISQSYLVELSILAPGGQDVIG--EDMKAFAEQLKPLVQLEKIDYKRL 118
               E +++  +VEL  L+ G +  +   E +  +AE L P V+L K D++ L
Sbjct:   184 --ELLNKHSMVELQCLS-GEEGFVAAAEYLNTYAEYLYPFVELIKFDHRLL 231

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2041243 MED18 "AT2G22370" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00048, P = 0.00048
 Identities = 30/117 (25%), Positives = 51/117 (43%)

Query:     2 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF---RKGRMKILVSKI 58
             G G      +VR+ I+   S   +     +G ++D E +  G+ F   R   + + VS +
Sbjct:    78 GAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAFHFQRTAHISVSVSSV 137

Query:    59 FKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGE---DMKAFAEQLKPLVQLEK 112
              KM +    D  V P++    + + + AP   +   E    + +F E L PLV L K
Sbjct:   138 NKMPKVHAIDEAV-PVTPGMQI-VDVTAPATSENYSEVAAAVSSFCEFLAPLVHLSK 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      124       124   0.00091  102 3  11 22  0.50    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  487 (52 KB)
  Total size of DFA:  100 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.87u 0.15s 13.02t   Elapsed:  00:00:00
  Total cpu time:  12.87u 0.15s 13.02t   Elapsed:  00:00:00
  Start:  Thu Aug 15 14:08:37 2013   End:  Thu Aug 15 14:08:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016592 "mediator complex" evidence=IDA

GO:0010219 "regulation of vernalization response" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0048442 "sepal development" evidence=IGI

GO:0048443 "stamen development" evidence=IGI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28GE1	MED18_XENTR	No assigned EC number	0.5565	0.9193	0.5480	yes	N/A
Q9BUE0	MED18_HUMAN	No assigned EC number	0.5689	0.9274	0.5528	yes	N/A
Q7QGX9	MED18_ANOGA	No assigned EC number	0.6896	0.8709	0.5118	yes	N/A
Q0VCD4	MED18_BOVIN	No assigned EC number	0.5603	0.9274	0.5528	yes	N/A
Q9CZ82	MED18_MOUSE	No assigned EC number	0.5517	0.9274	0.5528	yes	N/A
Q9XZT1	MED18_DROME	No assigned EC number	0.6754	0.9193	0.5253	yes	N/A
Q7T3H7	MED18_DANRE	No assigned EC number	0.5775	0.9274	0.5528	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
pfam09637	243	pfam09637, Med18, Med18 protein	4e-30
PRK08366	390	PRK08366, vorA, 2-ketoisovalerate ferredoxin oxido	0.002

>gnl|CDD|220325 pfam09637, Med18, Med18 protein

 Score =  107 bits (270), Expect = 4e-30
 Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 9/123 (7%)

Query: 5   DKARPTIVRSSIDVA-CSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
              RP  VR+ I+    S ++++FL E+G R D+EYI++G  F KG + I +SK+FK+  
Sbjct: 118 GNNRPVTVRTIIESDLPSGSLLQFLKELGYRFDYEYITKGVRFFKGDIVITLSKVFKIPD 177

Query: 64  GKPSDSGV---EPISQSYLVELSILAPGGQDVIGEDM-----KAFAEQLKPLVQLEKIDY 115
               DS        S SYLVE SI  P G D+   +          EQLK LV+LE  D 
Sbjct: 178 EGQEDSSPLELLDPSGSYLVEASINVPKGTDIEAMNKAVAELLKLKEQLKGLVELEIPDR 237

Query: 116 KRL 118
             +
Sbjct: 238 LSM 240

Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators. Length = 243

>gnl|CDD|169406 PRK08366, vorA, 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 58  IFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKID 114
           +F  ++G   ++   PI ++Y+V L     GG+D    D+KA AE +K +++  K+D
Sbjct: 329 LFTEAKGALYNTDARPIMKNYIVGL-----GGRDFTVNDVKAIAEDMKKVIEKGKLD 380

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG3264|consensus	221		100.0
PF09637	250	Med18: Med18 protein; InterPro: IPR019095 The Medi	99.94
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	96.1
COG1437	178	CyaB Adenylate cyclase, class 2 (thermophilic) [Nu	94.15
cd07890	169	CYTH-like_AC_IV-like Adenylyl cyclase (AC) class I	91.83
PHA00432	137	internal virion protein A	81.62

>KOG3264|consensus

Probab=100.00  E-value=1.6e-51  Score=325.19  Aligned_cols=121  Identities=55%  Similarity=0.869  Sum_probs=113.9

Q ss_pred             CCCCCCceeeeeeeEeeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCC-CCCCccCCceEEE
Q psy4197           3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE   81 (124)
Q Consensus         3 ~gd~~~~~lVRs~vdv~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~-~~~e~~s~s~LVE   81 (124)
                      .||++||||||||||+++|+|+++||++|||||||||+++||+|+||||||+||+.+++..||..+ +..+++|+|||||
T Consensus        93 ~gd~~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~kgrmkI~vs~l~~~~~pg~~d~~s~~pvS~sylve  172 (221)
T KOG3264|consen   93 RGDDQRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFRKGRMKISVSKLSVIKVPGVHDIDSAEPVSPSYLVE  172 (221)
T ss_pred             cccccccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhcccceEEEEEEEEEeccCcccccccccccCcccEEE
Confidence            479999999999999999999999999999999999999999999999999999999998885554 3789999999999


Q ss_pred             EEeeCCCCCchH--HHHHHHHHHhcccceeeecCCccccccCCC
Q psy4197          82 LSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDYKRLPLSMA  123 (124)
Q Consensus        82 iSvlap~~~d~~--a~~ir~FAE~L~Plv~L~K~d~~~l~~s~a  123 (124)
                      |||+||+|+||+  |++||+|||||+|||||+|+||||++.-||
T Consensus       173 lsV~aPa~~E~~~va~~mr~FaeqL~PLVhleKidy~r~m~p~~  216 (221)
T KOG3264|consen  173 LSVVAPAGQENYEVAAAMRSFAEQLKPLVHLEKIDYKRLMVPTA  216 (221)
T ss_pred             EEEecCCccchhhHHHHHHHHHHHhhhhhccccCChhhcccccc
Confidence            999999999955  999999999999999999999999987765

>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.94  E-value=2.4e-26  Score=184.12  Aligned_cols=115  Identities=39%  Similarity=0.594  Sum_probs=96.9

Q ss_pred             CCCCCCceeeeeeeEee---ccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCC-----CCCCCcc
Q psy4197           3 VGDKARPTIVRSSIDVA---CSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPS-----DSGVEPI   74 (124)
Q Consensus         3 ~gd~~~~~lVRs~vdv~---~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~-----~~~~e~~   74 (124)
                      +|+ +|++.+|+++++.   +|+|+++||++|||+++|||+.+||+|.+|+|+|++++|+++.+.+..     +......
T Consensus       120 ~~~-~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~~~Eyv~~G~~F~~g~i~I~l~ri~~~~~~~~~~~~~~~l~~~d~  198 (250)
T PF09637_consen  120 AGK-NRPVTVRTIIESTIVGTSGSLLSFLNELGYRFDYEYVVEGYRFFKGDIVIELFRIFKVPPPGQYPPPFDKLKPLDP  198 (250)
T ss_dssp             CCS-TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEEEEEEEEEEEEEEECCEEEEEEEEEEEETTCCE---SS-EEECTT
T ss_pred             CCC-CCceeEEEEEEEEEecCCCCHHHHHHHcCCceEEEEEEEEEEEEECCEEEEEEEEEecCCCCCCCCCcccCCccCC
Confidence            355 8999999999988   699999999999999999999999999999999999999998876543     2245667


Q ss_pred             CCceEEEEEeeCCCCCchH-----HHHHHHHHHhcccceeeecCCcccc
Q psy4197          75 SQSYLVELSILAPGGQDVI-----GEDMKAFAEQLKPLVQLEKIDYKRL  118 (124)
Q Consensus        75 s~s~LVEiSvlap~~~d~~-----a~~ir~FAE~L~Plv~L~K~d~~~l  118 (124)
                      +++|+||+||.+|.++|..     .+++..|+|+|+|+|+|+++|++.+
T Consensus       199 s~~~lv~a~v~v~~~~d~~~i~~~~~~L~~~~~~Lk~~v~L~~~DR~~~  247 (250)
T PF09637_consen  199 SGSWLVEASVNVPDGTDPERINKASKELLKFQEQLKGLVDLEKPDRKSM  247 (250)
T ss_dssp             TTEEEEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTS--B---GGGG
T ss_pred             CCCEEEEEEEEccCCCCHHHHHHHHHHHHHHHHHhhccEEEEecccccc
Confidence            9999999999999998754     5667779999999999999999875

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=96.10  E-value=0.091  Score=39.93  Aligned_cols=81  Identities=15%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             eeeeeeeEeecc--ccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCC
Q psy4197          10 TIVRSSIDVACS--CTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAP   87 (124)
Q Consensus        10 ~lVRs~vdv~~S--~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap   87 (124)
                      ..+|.-+++.+.  .++...|..|||+.-.++-..-..|+.|.++|++..+             +.+ + +.|||-+.++
T Consensus        74 ~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v-------------~~l-G-~FvEIE~~~~  138 (174)
T TIGR00318        74 SKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKRRIYQTNELNVSIDDV-------------EGL-G-FFLEIEKIIN  138 (174)
T ss_pred             ceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEEEEEEECCEEEEEEcc-------------CCC-c-cEEEEEEecC
Confidence            467888887775  6778899999999999999999999999888887533             223 3 5669998886


Q ss_pred             CCC--chHHHHHHHHHHhcc
Q psy4197          88 GGQ--DVIGEDMKAFAEQLK  105 (124)
Q Consensus        88 ~~~--d~~a~~ir~FAE~L~  105 (124)
                      +..  +.+-+.+..+|+.|-
T Consensus       139 ~~~~~~~~~~~i~~~~~~LG  158 (174)
T TIGR00318       139 NINDKDLALEEIFEIINQLG  158 (174)
T ss_pred             CccchHHHHHHHHHHHHHcC
Confidence            543  556788888888874

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]

Probab=94.15  E-value=0.58  Score=37.04  Aligned_cols=80  Identities=16%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             eeeeeeEeecc--ccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCC
Q psy4197          11 IVRSSIDVACS--CTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG   88 (124)
Q Consensus        11 lVRs~vdv~~S--~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~   88 (124)
                      =.|.-+++.++  +++.+.|.+|||+.-.+-...=-.|+.|...|++..|..+   |            ..|||=+.+++
T Consensus        76 k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegL---G------------~F~EIE~~~~d  140 (178)
T COG1437          76 KTREEIEIEVSDVEKALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGL---G------------DFLEIEVMVDD  140 (178)
T ss_pred             cceeeEEEEeCCHHHHHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCC---c------------ccEEEEEecCC
Confidence            45778888888  8999999999999999999999999999999988766543   2            36788888888


Q ss_pred             CCchH--HHHHHHHHHhcc
Q psy4197          89 GQDVI--GEDMKAFAEQLK  105 (124)
Q Consensus        89 ~~d~~--a~~ir~FAE~L~  105 (124)
                      .++-.  -+.+..|+.+|-
T Consensus       141 ~~e~~~~~~~~~~i~~~lG  159 (178)
T COG1437         141 ENEIDGAKEEIEEIARQLG  159 (178)
T ss_pred             chhhHHHHHHHHHHHHHhC
Confidence            87644  468999998874

>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

Probab=91.83  E-value=2.5  Score=31.42  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             eeeeeEeec--cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCC
Q psy4197          12 VRSSIDVAC--SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGG   89 (124)
Q Consensus        12 VRs~vdv~~--S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~   89 (124)
                      .|..+++.+  -.++...|..|||+.-+.+-..=..|+.+...|++..+..             +  -+.+||-+.+++ 
T Consensus        76 ~~~E~e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~-------------l--G~f~EiE~~~~~-  139 (169)
T cd07890          76 VREEIETEVADPEAMKEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEG-------------L--GDFVEIEVVLED-  139 (169)
T ss_pred             ceEEEEEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCC-------------C--CceEEEEEEeCC-
Confidence            577777666  4567778999999999999888888988888888766542             1  238999988877 


Q ss_pred             CchHHHHHHHHHHhcc
Q psy4197          90 QDVIGEDMKAFAEQLK  105 (124)
Q Consensus        90 ~d~~a~~ir~FAE~L~  105 (124)
                      .+...+.+..++++|-
T Consensus       140 ~~~~~~~l~~~~~~lg  155 (169)
T cd07890         140 IEEAEEGLGEAAELLG  155 (169)
T ss_pred             cHHHHHHHHHHHHHcC
Confidence            6777888888888764

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel

>PHA00432 internal virion protein A

Probab=81.62  E-value=1.2  Score=33.94  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             cHHHHHHHhCcceeeEEEEeeeeEeeeeeE
Q psy4197          23 TVVEFLTEMGCRMDFEYISRGYMFRKGRMK   52 (124)
Q Consensus        23 n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ik   52 (124)
                      ...+||+.+||+.+=||-..|+.|+...|+
T Consensus       106 ~hir~Lk~lGf~f~~e~~~~g~~F~~Fti~  135 (137)
T PHA00432        106 SHIRFLKSIGAVFHNEFTGDGCQFQLFTIT  135 (137)
T ss_pred             HHHHHHHHcCeeeecccccCCceeEEEEec
Confidence            357899999999999999999999977663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3c0t_A	207	Mediator of RNA polymerase II transcription subuni	9e-22
2hzm_B	317	RNA polymerase II mediator complex subunit 18; bet	4e-16

>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe} Length = 207

 Score = 84.8 bits (209), Expect = 9e-22
 Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 3   VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
              + +  I   +     + +V EF+ +MG     EYI +G  +      + + +    S
Sbjct: 88  PKREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPS 147

Query: 63  QGKPSDSGVEPI--SQSYLVELSILAPGGQDVIG-----EDMKAFAEQLKPLVQLEKI 113
           Q +       P+   Q +++ +        + +       ++      L     L+ +
Sbjct: 148 QQRSIKPPFHPMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNV 205

>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E Length = 317

 Score = 71.4 bits (174), Expect = 4e-16
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 10  TIVRSSIDVAC--SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPS 67
           TI  + I  +   + +V   +  +G   +F+Y++ G  F       L+ ++ K+ Q    
Sbjct: 183 TIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKH--GLILELQKIWQ-IEE 239

Query: 68  DSGVEPISQSYLVELSILAPGG--QDVIG---EDMKAFAEQLKPLVQLEKIDYKRL 118
               +  S  +L++  I    G   D I      +    ++L+  ++L   D + +
Sbjct: 240 AGNSQITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDRQSM 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3c0t_A	207	Mediator of RNA polymerase II transcription subuni	100.0
2hzm_B	317	RNA polymerase II mediator complex subunit 18; bet	99.93
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	90.71

>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-34  Score=229.26  Aligned_cols=110  Identities=15%  Similarity=0.259  Sum_probs=98.9

Q ss_pred             CCCCceeeeeeeE-eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCcc--CCceEEE
Q psy4197           5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPI--SQSYLVE   81 (124)
Q Consensus         5 d~~~~~lVRs~vd-v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~--s~s~LVE   81 (124)
                      |++|||++|++++ +.+|+|+++|+++||||+||||+.+||+|++|+|||++++|++..+|....-+..++  |+|||||
T Consensus        89 ~~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~f~~g~~kI~l~ril~~~~p~~~~pp~~pLd~S~sylle  168 (207)
T 3c0t_A           89 KREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWILH  168 (207)
T ss_dssp             SCTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEEEEETTEEEEEEEEEEESSTTCCSSCEEESSTTCCEEEE
T ss_pred             CCcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeEEEeCCEEEEEEeeecCCCCCccCCCccccccCcceEEE
Confidence            6788999999999 999999999999999999999999999999999999999999933333111122388  9999999


Q ss_pred             EEeeCCCCCch-----HHHHHHHHHHhcccceeeecCC
Q psy4197          82 LSILAPGGQDV-----IGEDMKAFAEQLKPLVQLEKID  114 (124)
Q Consensus        82 iSvlap~~~d~-----~a~~ir~FAE~L~Plv~L~K~d  114 (124)
                      +||++|+++|.     .+++|+.|||||+|+|+|+|+|
T Consensus       169 ~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~Lek~~  206 (207)
T 3c0t_A          169 VYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVR  206 (207)
T ss_dssp             EEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCCCBCCC
T ss_pred             EEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            99999999999     6999999999999999999998

>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E

Probab=99.93  E-value=1.1e-25  Score=186.59  Aligned_cols=107  Identities=19%  Similarity=0.366  Sum_probs=95.8

Q ss_pred             CCCCceeeeeeeE--eeccc----cHHHHHHHhCcceeeEEEEeeeeEe-eeeeEEEEEEeeeecCCCCCCCCCCccCCc
Q psy4197           5 DKARPTIVRSSID--VACSC----TVVEFLTEMGCRMDFEYISRGYMFR-KGRMKILVSKIFKMSQGKPSDSGVEPISQS   77 (124)
Q Consensus         5 d~~~~~lVRs~vd--v~~S~----n~~~Fl~~LGfr~D~Eyl~~G~~f~-kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s   77 (124)
                      +++|+|.+|++++  +.+|+    +++.||++|||++||||+.+||+|+ ||+|+|++++|+++...+.+    .+.+++
T Consensus       174 gknr~Vt~R~i~eS~l~~s~~~~~svl~FL~eLGY~fd~EYV~kG~~F~~kgdI~I~L~KI~~~~~~~~~----~d~Sgs  249 (317)
T 2hzm_B          174 GNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKHGLILELQKIWQIEEAGNS----QITSGG  249 (317)
T ss_dssp             ---CCSEEEEEEEEEEEEEEETTCSHHHHHHHTTEEEEEEEEEEEEEEECGGGCEEEEEEEEEEETTEEE----ETTTTE
T ss_pred             CCCCceEEEEEEeeeeecCCCCcccHHHHHHHcCCceeEEEEEEEEEEEEcCCEEEEEEEEEeeCCCCCC----CCCCCc
Confidence            3779999999999  66788    9999999999999999999999999 79999999999998754322    377999


Q ss_pred             eEEEEEeeCCCCCch-----HHHHHHHHHHhcccceeeecCCc
Q psy4197          78 YLVELSILAPGGQDV-----IGEDMKAFAEQLKPLVQLEKIDY  115 (124)
Q Consensus        78 ~LVEiSvlap~~~d~-----~a~~ir~FAE~L~Plv~L~K~d~  115 (124)
                      ||||+||.+|.++|.     .+++|+.|+|||+|+|+|+|+|=
T Consensus       250 ylLkasV~V~~~tD~d~i~~as~eL~~LkeqLkglVeLE~pDR  292 (317)
T 2hzm_B          250 FLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDR  292 (317)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTTCCCBCCCH
T ss_pred             eEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhhhhcceeccch
Confidence            999999999999987     69999999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	92.56
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	86.92

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.56  E-value=0.53  Score=31.97  Aligned_cols=79  Identities=10%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             eeeeeeEeecc--ccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCC
Q psy4197          11 IVRSSIDVACS--CTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG   88 (124)
Q Consensus        11 lVRs~vdv~~S--~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~   88 (124)
                      -.|..+++.++  +++..+|..|||+.-+++-..-..|+.+.++|++..+--               .-+.+||=+.+. 
T Consensus        68 ~~~~E~e~~v~~~~~~~~~l~~lg~~~~~~~~K~R~~y~~~~~~i~lD~v~~---------------lg~f~EiE~~~~-  131 (163)
T d1yema_          68 EEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEG---------------IGDFVDIEVISD-  131 (163)
T ss_dssp             CEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETT---------------TEEEEEEEEECS-
T ss_pred             ceEEEEEecccchHHHHHHHhhcCceEEEEEEEEEEEEEECCEEEEEEeeCC---------------CCcEEEEEEEec-
Confidence            46777775555  568999999999999999999999999999999976421               124678887753 


Q ss_pred             CCchHHHHHHHHHHhcc
Q psy4197          89 GQDVIGEDMKAFAEQLK  105 (124)
Q Consensus        89 ~~d~~a~~ir~FAE~L~  105 (124)
                      ..+..-+.+..+|.+|-
T Consensus       132 ~~~~~~~~i~~l~~~Lg  148 (163)
T d1yema_         132 SPEEAKEKIWEVAKMLG  148 (163)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHcC
Confidence            34556778999999884

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=86.92  E-value=2.6  Score=28.40  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCC--CchHHH
Q psy4197          18 VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGG--QDVIGE   95 (124)
Q Consensus        18 v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~--~d~~a~   95 (124)
                      +.--+++..+|..+||+..+++-..--.|+.+.++|++-.+..          +     -..+||=+.+.+.  .+...+
T Consensus        83 v~~~~~~~~il~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~----------l-----g~f~EiE~~~~~~~~~e~~~~  147 (174)
T d2acaa1          83 ITKLDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDG----------F-----GHFAEFAIMTDDETALARYRE  147 (174)
T ss_dssp             BSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETT----------T-----EEEEEEEEEESCSGGGTTHHH
T ss_pred             cCCHHHHHHHHHhCCCceEEEEEEEEEEEEECCEEEEEEEecC----------C-----CcEEEEEEEeCCccchHHHHH
Confidence            5556789999999999999999999999999999999876521          1     1367888777544  367788


Q ss_pred             HHHHHHHhcccc-eeeecCCcccc
Q psy4197          96 DMKAFAEQLKPL-VQLEKIDYKRL  118 (124)
Q Consensus        96 ~ir~FAE~L~Pl-v~L~K~d~~~l  118 (124)
                      .|..||++|--= -.+.+-.|..|
T Consensus       148 ~i~~~~~~LGi~~~~~~~~sY~el  171 (174)
T d2acaa1         148 RLVALAQQFHLSEADREHRSYKEI  171 (174)
T ss_dssp             HHHHHHHHTTCCGGGBCCSCTTTS
T ss_pred             HHHHHHHHcCcCcccccccCHHHH
Confidence            999999997532 23444555544