Psyllid ID: psy4235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEEcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHEEccccEEEEEccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccEEEEcccEcccHHHHHHHcHHHEEccccccHHHHHHHcHccHEEEEccccHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHccEEEEEccccEEEEcccHHHHHHcccc
Coil and Loop (DISEMBL)
MSPSGAGKTTLLAALNKRVKGLVQgeillngcpisrtVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLtepqilfcdepttgldsysaNNVVNLLKQLACESRIVICAihqptsgvfekfdTVSLLAHGGLLAYHGQVSKVLKHFAK
Flexible Loop (DISEMBL)
MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK
Low Complexity Region (SEG)
MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSllahggllayhgQVSKVLKHFAK
Disordered region (IsUnstruct)
*********TLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK****
Disordered Region (DISOPRED)
MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA*
Disordered Region (DISEMBL)
********TTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK
Disordered Region (DISPRO)
*****AGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
P45843	666	Protein scarlet OS=Drosop	yes	N/A	0.989	0.292	0.482	6e-42
Q80W57	657	ATP-binding cassette sub-	yes	N/A	0.979	0.293	0.408	6e-36
Q4GZT4	655	ATP-binding cassette sub-	yes	N/A	0.979	0.294	0.418	6e-36
Q8MIB3	656	ATP-binding cassette sub-	no	N/A	0.979	0.294	0.423	1e-35
Q9UNQ0	655	ATP-binding cassette sub-	yes	N/A	0.974	0.293	0.420	2e-35
Q7TMS5	657	ATP-binding cassette sub-	yes	N/A	0.979	0.293	0.418	2e-35
Q55DW4	793	ABC transporter G family	yes	N/A	0.984	0.244	0.381	6e-35
P10090	687	Protein white OS=Drosophi	no	N/A	0.989	0.283	0.417	8e-35
Q5MB13	654	ATP-binding cassette sub-	yes	N/A	0.974	0.293	0.420	8e-35
Q9SJK6	1082	Putative white-brown comp	yes	N/A	0.994	0.181	0.400	2e-34

>sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 125/205 (60%), Gaps = 10/205 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           M  SG+GKTTL++ L  R     +VQG+IL+NG  I    M RISGYV Q D  +  LTV
Sbjct: 107 MGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIG-PFMHRISGYVYQDDLFLGSLTV 165

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG------LSGGQRKRLA 112
           LEHL FMA L +DRR +  E    I  ++E  G+    Q +I        LSGG+RKRLA
Sbjct: 166 LEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLA 225

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
            AV+LL  P ILFCDEPTTGLDSYSA  +V  L +LA +   ++C IHQP+S +F+ F+ 
Sbjct: 226 FAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNN 285

Query: 173 VSLLAHGGLLAYHGQVSKVLKHFAK 197
           V LLA  G +A+ G     L  FA 
Sbjct: 286 VMLLAD-GRVAFTGSPQHALSFFAN 309

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.
Drosophila melanogaster (taxid: 7227)

>sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 129/203 (63%), Gaps = 10/203 (4%)

Query: 1   MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R   +GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct: 78  LGPTGGGKSSLLDVLAARKDPRGL-SGDVLINGAPQPANFKCS-SGYVVQDDVVMGTLTV 135

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
            E+LQF A L + +     E N+ I  +++ LG++     ++      G+SGG+RKR ++
Sbjct: 136 RENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSI 195

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
            ++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 196 GMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 255

Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
           +LLA G L+ +HG   K L++FA
Sbjct: 256 TLLASGKLM-FHGPAQKALEYFA 277

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Rattus norvegicus (taxid: 10116)

>sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 128/203 (63%), Gaps = 10/203 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVK--GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R    GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct: 78  LGPTGGGKSSLLDILAARKDPHGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 135

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLAL 113
            E+LQF A L +    T  E N+ I +V++ LG++     +     I G+SGG+RKR ++
Sbjct: 136 RENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 195

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 196 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 255

Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
           +LLA G L+ +HG   + L +F 
Sbjct: 256 TLLASGRLM-FHGPAQEALGYFG 277

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Bos taurus (taxid: 9913)

>sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 128/203 (63%), Gaps = 10/203 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVK--GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R    GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct: 79  LGPTGGGKSSLLDVLAARKDPHGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 136

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLAL 113
            E+LQF A L +    T  E N+ I  V++ LG++     +     I G+SGG+RKR ++
Sbjct: 137 RENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 196

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 197 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 256

Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
           +LLA G L+ +HG   + L +FA
Sbjct: 257 TLLASGRLM-FHGPAREALGYFA 278

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Sus scrofa (taxid: 9823)

>sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 127/202 (62%), Gaps = 10/202 (4%)

Query: 1   MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R    GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct: 79  LGPTGGGKSSLLDVLAARKDPSGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 136

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLAL 113
            E+LQF A L +    T  E N+ I RV++ LG++     +     I G+SGG+RKR ++
Sbjct: 137 RENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 196

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
            ++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 197 GMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 256

Query: 174 SLLAHGGLLAYHGQVSKVLKHF 195
           +LLA G L+ +HG   + L +F
Sbjct: 257 TLLASGRLM-FHGPAQEALGYF 277

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123.

Homo sapiens (taxid: 9606)

>sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 127/203 (62%), Gaps = 10/203 (4%)

Query: 1   MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R   KGL  G++L+NG P         SGYV Q D ++  LTV
Sbjct: 78  LGPTGGGKSSLLDVLAARKDPKGL-SGDVLINGAP-QPAHFKCCSGYVVQDDVVMGTLTV 135

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLAL 113
            E+LQF A L +       E N+ I  +++ LG+      +     I G+SGG+RKR ++
Sbjct: 136 RENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSI 195

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
            ++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 196 GMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 255

Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
           +LLA G L+ +HG   K L++FA
Sbjct: 256 TLLASGKLV-FHGPAQKALEYFA 277

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation.

Mus musculus (taxid: 10090)

>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1

 Score =  147 bits (370), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 8/202 (3%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSGAGKTTLL  L  R+     G + LNG      +  ++ GYV Q D L+  LTV E
Sbjct: 155 MGPSGAGKTTLLDILAHRLNINGSGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRE 214

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV-------QISGLSGGQRKRLAL 113
            L F A+L M R     E  + +  +++ +G+N            +I G+SGG+R+R+ +
Sbjct: 215 TLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTI 274

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           +++LLT P ++  DEPT+GLD+ ++  V++ LK+LA   R +IC IHQP S +++ FD +
Sbjct: 275 SIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNL 334

Query: 174 SLLAHGGLLAYHGQVSKVLKHF 195
            LL  G  + Y+G+ +K L++F
Sbjct: 335 LLLGDGNTI-YYGKANKALEYF 355

Dictyostelium discoideum (taxid: 44689)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 11/206 (5%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ----GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           M  SGAGKTTLL AL  R    +Q    G  LLNG P+    M     YV Q D  I  L
Sbjct: 129 MGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSL 188

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV------QISGLSGGQRKR 110
           T  EHL F A + M R  T+ +    + +V++ L ++  +        ++ GLSGG+RKR
Sbjct: 189 TAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKR 248

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
           LA A + LT+P +L CDEPT+GLDS++A++VV +LK+L+ + + VI  IHQP+S +FE F
Sbjct: 249 LAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELF 308

Query: 171 DTVSLLAHGGLLAYHGQVSKVLKHFA 196
           D + L+A  G +A+ G  S+ +  F+
Sbjct: 309 DKILLMAE-GRVAFLGTPSEAVDFFS 333

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 10/202 (4%)

Query: 1   MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P+G GK++LL  L  R    GL  G++L+NG  +  T     SGYV Q D ++  LTV
Sbjct: 79  LGPTGGGKSSLLDVLAARKDPSGL-SGDVLINGA-LRPTNFKCNSGYVVQDDVVMGTLTV 136

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLAL 113
            E+LQF A L +    T  E N+ I RV++ LG++     +     I G+SGG+RKR ++
Sbjct: 137 RENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 196

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
            ++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct: 197 GMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 256

Query: 174 SLLAHGGLLAYHGQVSKVLKHF 195
           +LLA G L+ +HG   + L +F
Sbjct: 257 TLLASGRLM-FHGPAQEALGYF 277

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells.

Macaca mulatta (taxid: 9544)

>sp|Q9SJK6|WBC30_ARATH Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=3 SV=3

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 6/202 (2%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           M PSGAGKTT L+AL  +  G  + G IL+NG   S     +I+G+V Q D +   LTV 
Sbjct: 517 MGPSGAGKTTFLSALAGKATGCTRTGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVE 576

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQ-----VQISGLSGGQRKRLALA 114
           E+L+F A+  +    +  +    I RV+E+LG+ H R      ++  G+SGGQRKR+ + 
Sbjct: 577 ENLRFSARCRLSAYMSKADKVLIIERVIESLGLQHVRDSLVGTIEKRGISGGQRKRVNVG 636

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
           V+++ EP +L  DEPTTGLDS S+  ++  L++ A E   +   +HQP+  +++ FD + 
Sbjct: 637 VEMVMEPSLLILDEPTTGLDSASSQLLLRALRREALEGVNICMVVHQPSYTMYKMFDDMI 696

Query: 175 LLAHGGLLAYHGQVSKVLKHFA 196
           +LA GGL  YHG V K+ ++FA
Sbjct: 697 ILAKGGLTVYHGSVKKIEEYFA 718

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
328719323	552	PREDICTED: protein scarlet-like [Acyrtho	0.994	0.355	0.558	1e-53
328696629	621	PREDICTED: protein scarlet-like [Acyrtho	0.994	0.315	0.548	6e-53
328719312	533	PREDICTED: protein scarlet-like [Acyrtho	0.994	0.367	0.553	2e-52
340726282	629	PREDICTED: protein scarlet-like [Bombus	0.984	0.308	0.528	2e-49
350405171	629	PREDICTED: protein scarlet-like [Bombus	0.984	0.308	0.528	6e-49
328712876	620	PREDICTED: protein scarlet-like [Acyrtho	0.994	0.316	0.527	7e-49
380024007	629	PREDICTED: protein scarlet-like [Apis fl	0.984	0.308	0.528	7e-49
357621664	644	putative scarlet [Danaus plexippus]	0.989	0.302	0.494	1e-48
383866342	643	PREDICTED: protein scarlet-like [Megachi	0.908	0.278	0.564	2e-48
379698902	670	scarlet [Bombyx mori] gi|326784694|dbj|B	0.979	0.288	0.477	2e-42

>gi|328719323|ref|XP_001952363.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 142/197 (72%), Gaps = 1/197 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSG+GKTTL+A ++ R KG  +GE+LLNG PIS  VM +ISG+V Q D   ++LT LE
Sbjct: 85  MGPSGSGKTTLMATISHRTKGNFEGELLLNGQPISEEVMIKISGFVPQHDISFDQLTALE 144

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           HL  MA L + R+TT +EL + I +++  LG++     +IS LSGG+RK++ALAVQLL +
Sbjct: 145 HLSLMANLKVSRKTTKIELKEHIDKIITTLGMSKFLDTRISFLSGGERKKIALAVQLLND 204

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDE TTGLDSYSA ++VN LK +A   +IVIC IHQP SGVF KFD V LL++G 
Sbjct: 205 PPILFCDEITTGLDSYSAAHIVNTLKAVARMGKIVICTIHQPASGVFGKFDDVILLSNGR 264

Query: 181 LLAYHGQVSKVLKHFAK 197
            LAY G V+ V + F K
Sbjct: 265 -LAYQGPVTMVHQLFKK 280

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696629|ref|XP_001944001.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 137/197 (69%), Gaps = 1/197 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSG+GKTTL+A ++ R KG  +GE+LLNG P+S  VM +ISG+V Q D   E+LT LE
Sbjct: 84  MGPSGSGKTTLMATISHRTKGNFEGELLLNGRPVSEEVMIKISGFVPQHDITFEQLTTLE 143

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           HL  MA L MDRRTT   L   +   +  LG+       +S LSGG+RK++ALAVQLL +
Sbjct: 144 HLYLMANLKMDRRTTKTALKARVDYTVITLGMREFLDTALSMLSGGERKKVALAVQLLND 203

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDE TTGLDSYSA ++VN LK++A   +IVIC IHQP SGVF+KFD + LL++G 
Sbjct: 204 PPILFCDEVTTGLDSYSATHIVNTLKRIARTGKIVICTIHQPASGVFDKFDEIVLLSNGR 263

Query: 181 LLAYHGQVSKVLKHFAK 197
            LAY G V  + + F K
Sbjct: 264 -LAYQGPVPMINQLFQK 279

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719312|ref|XP_001950672.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/197 (55%), Positives = 141/197 (71%), Gaps = 1/197 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSG+GKTTL+A ++ R KG  +GE+LLNG PIS  VM +ISG+V Q D   ++LT LE
Sbjct: 85  MGPSGSGKTTLMATISHRSKGNFEGELLLNGQPISEEVMIKISGFVPQHDINFDQLTALE 144

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           HL  MA L + R+TT +EL + I +++  LG++     +IS LSGG+RK++ALAVQLL +
Sbjct: 145 HLSLMANLKVSRKTTKIELKEHIDKIITTLGMSKFLDTRISFLSGGERKKIALAVQLLND 204

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDE TTGLD YSA ++VN LK +A   +IVIC IHQP SGVF KFD V LL++G 
Sbjct: 205 PPILFCDEITTGLDCYSAAHIVNTLKGVARMGKIVICTIHQPASGVFGKFDEVILLSNGR 264

Query: 181 LLAYHGQVSKVLKHFAK 197
            LAY G V+ V + F K
Sbjct: 265 -LAYQGPVTMVHQLFKK 280

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726282|ref|XP_003401489.1| PREDICTED: protein scarlet-like [Bombus terrestris]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 131/195 (67%), Gaps = 1/195 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSGAGKTTLLA +++RVKG   G++LLNG PI    M RISG+V Q D  IE LT+LE
Sbjct: 69  MGPSGAGKTTLLATISRRVKGEATGDVLLNGKPIDTDQMIRISGFVPQMDLAIESLTILE 128

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           H++FMA + MDRR       + I  ++  LG+      ++S LSGG+RKR+ LAVQLLTE
Sbjct: 129 HMEFMACMKMDRRLGANVRRQRIMVLLGELGLGKCITTKLSALSGGERKRVTLAVQLLTE 188

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDEPTTGLDSY A  VV  L+ +A   RIVIC +HQP SG+ + F  V LL+ G 
Sbjct: 189 PSILFCDEPTTGLDSYGAITVVKTLRDVAASGRIVICTLHQPASGLLDIFHEVVLLSSGR 248

Query: 181 LLAYHGQVSKVLKHF 195
            +A+ G  +  +K F
Sbjct: 249 -VAFQGSSTDAMKFF 262

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405171|ref|XP_003487348.1| PREDICTED: protein scarlet-like [Bombus impatiens]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 130/195 (66%), Gaps = 1/195 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSGAGKTTLLA +++RVKG   G++LLNG PI    M RISG+V Q D  IE LT+LE
Sbjct: 69  MGPSGAGKTTLLATISRRVKGEATGDVLLNGKPIDTDQMIRISGFVPQMDLAIESLTILE 128

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           H++FMA + MDRR       + I  ++  LG+      ++S LSGG+RKR+ LAVQLLTE
Sbjct: 129 HMEFMACMKMDRRLRANVRRQRIMVLLGELGLGKCITTKLSALSGGERKRVTLAVQLLTE 188

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDEPTTGLDSY A  VV  L+ +A   RIVIC +HQP SG+ + F  V LL+ G 
Sbjct: 189 PSILFCDEPTTGLDSYGAMTVVKTLRDVAASGRIVICTLHQPASGLLDIFHEVLLLSSGR 248

Query: 181 LLAYHGQVSKVLKHF 195
            +A+ G     +K F
Sbjct: 249 -VAFQGSSIDAMKFF 262

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712876|ref|XP_001942858.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 137/197 (69%), Gaps = 1/197 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSG+GKTTL+A ++ R KG   GE+LLNG  +S  VM +ISG+VAQ+D    +LTVLE
Sbjct: 83  MGPSGSGKTTLMATISHRTKGNFNGELLLNGRSVSEDVMIKISGFVAQEDISFVQLTVLE 142

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
            L+ MAKL MDR T+   +   I  +  +LG+N     ++  LSGG+RK++ALAVQL+ +
Sbjct: 143 QLKLMAKLKMDRTTSDKVIKDRIDYLAAHLGLNKIINSRLCFLSGGERKKVALAVQLIND 202

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDE TTGLDSYSA ++VN L+++A   +IVIC IHQP SG+F++F  V LL +G 
Sbjct: 203 PPILFCDEITTGLDSYSAAHIVNTLRRVAHSGKIVICTIHQPASGLFDQFQEVILLTNGR 262

Query: 181 LLAYHGQVSKVLKHFAK 197
            LAY G VS V   F K
Sbjct: 263 -LAYQGSVSLVNNFFQK 278

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024007|ref|XP_003695800.1| PREDICTED: protein scarlet-like [Apis florea]

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 132/195 (67%), Gaps = 1/195 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M PSGAGKTTLLA +++RVKG   G++LLNG PI    M RISG+V Q D  IE LT+ E
Sbjct: 69  MGPSGAGKTTLLATISRRVKGKATGDVLLNGKPIDTEQMIRISGFVPQTDLAIESLTIQE 128

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           H++FMA + MDRR       + IT ++  LG+      ++S LSGG+RKR+ LAV+LLTE
Sbjct: 129 HMEFMACMKMDRRLRANFRRQRITILLRELGLAKCTFTKLSALSGGERKRVTLAVELLTE 188

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDEPTTGLDSY A  VV  L+++A   RIVIC++HQP SG+ E F  V LL+ GG
Sbjct: 189 PSILFCDEPTTGLDSYGAMTVVRTLREVAASGRIVICSLHQPASGLLEIFHEVLLLS-GG 247

Query: 181 LLAYHGQVSKVLKHF 195
            +A+ G      + F
Sbjct: 248 RVAFQGSSIDATEFF 262

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621664|gb|EHJ73425.1| putative scarlet [Danaus plexippus]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 144/196 (73%), Gaps = 1/196 (0%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           M  SGAGKTTLLAA+++R K  + G ++LNG      +++RISG++ Q+D  I++LTV E
Sbjct: 83  MGSSGAGKTTLLAAISRRDKSAMSGYLMLNGRLAGADLIARISGFLPQEDLSIDDLTVSE 142

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           H++FMA+L MD+R+T    ++ + +++  LG+ +  + ++  LSGG+RKR+ALAVQLL +
Sbjct: 143 HMEFMARLMMDKRSTKSIRSRRVEQLLGELGVANCTRTKLKALSGGERKRVALAVQLLND 202

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P ILFCDEPTTGLDS++AN VV+ L++LA   ++VIC++HQP SGVFE F  V LLA  G
Sbjct: 203 PPILFCDEPTTGLDSFAANAVVSRLRRLAAGGKLVICSVHQPASGVFELFHQVVLLA-SG 261

Query: 181 LLAYHGQVSKVLKHFA 196
            +A+HG + +  + FA
Sbjct: 262 RIAFHGTIEQADQFFA 277

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866342|ref|XP_003708629.1| PREDICTED: protein scarlet-like [Megachile rotundata]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 124/179 (69%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           + PSGAGKTTLLA +++RVKG   GEILLNG PI    M RISG+V Q D  IE LTVLE
Sbjct: 81  LGPSGAGKTTLLATISRRVKGQATGEILLNGKPIDTGQMIRISGFVPQTDLAIESLTVLE 140

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           H++FMA + MDRR       + I  ++  LG+      ++S LSGG+RKR+ LAVQLLTE
Sbjct: 141 HMEFMACMKMDRRLRANVRRQRIMVLLGELGLGKCGNSKLSSLSGGERKRVTLAVQLLTE 200

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
           P ILFCDEPTTGLDSY A  V   L+++A   RIVIC++HQP SG+ E F  V LL+ G
Sbjct: 201 PSILFCDEPTTGLDSYGAMTVARTLREVAASGRIVICSVHQPASGLLEIFHEVLLLSSG 259

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|379698902|ref|NP_001243922.1| scarlet [Bombyx mori] gi|326784694|dbj|BAK08373.1| scarlet [Bombyx mori]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 129/203 (63%), Gaps = 10/203 (4%)

Query: 1   MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           M PSGAGKTTL++AL  R     ++ GEI++NG P+   V  R SGY+ Q D   E LTV
Sbjct: 109 MGPSGAGKTTLMSALAHRSPFGTVIDGEIIMNGRPVCSYV-DRESGYMHQDDIFAENLTV 167

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGL------SGGQRKRLA 112
           +EHL  MA+L MDRRT+ +   + + ++M  L +   R  +I GL      SGG+RKRLA
Sbjct: 168 IEHLTVMARLRMDRRTSTVARKRRVNQLMRQLSLYESRFTRIGGLDGHKTLSGGERKRLA 227

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
            A +LLT+P +LFCDEPTTGLDS SA  +V+LL+  A + + VIC IHQP+S +   FD 
Sbjct: 228 FATELLTDPGLLFCDEPTTGLDSSSALKLVSLLRASAAQGKTVICTIHQPSSELMAHFDK 287

Query: 173 VSLLAHGGLLAYHGQVSKVLKHF 195
           + LLA G  +A+ G  S  L  F
Sbjct: 288 LVLLAEGR-IAFAGNASAALGFF 309

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
FB|FBgn0003515	666	st "scarlet" [Drosophila melan	0.873	0.258	0.508	1.4e-36
WB|WBGene00012925	619	wht-8 [Caenorhabditis elegans	0.873	0.277	0.461	4.4e-32
FB|FBgn0000241	675	bw "brown" [Drosophila melanog	0.857	0.250	0.432	2.2e-31
WB|WBGene00021535	684	wht-7 [Caenorhabditis elegans	0.873	0.251	0.456	6.2e-31
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.878	0.251	0.431	2.8e-30
DICTYBASE|DDB_G0282103	1159	abcG24 "ABC transporter G fami	0.868	0.147	0.429	5.4e-30
MGI|MGI:1351659	652	Abcg5 "ATP-binding cassette, s	0.878	0.265	0.403	6.5e-30
UNIPROTKB|Q4GZT4	655	ABCG2 "ATP-binding cassette su	0.873	0.262	0.414	6.6e-30
UNIPROTKB|B2D1N9	658	ABCG2 "ATP-binding cassette su	0.873	0.261	0.414	6.7e-30
UNIPROTKB|J9P696	305	ABCG2 "Uncharacterized protein	0.873	0.563	0.408	7.9e-30

FB|FBgn0003515 st "scarlet" [Drosophila melanogaster (taxid:7227)]

 Score = 399 (145.5 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 92/181 (50%), Positives = 116/181 (64%)

Query:     1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             M  SG+GKTTL++ L  R     +VQG+IL+NG  I    M RISGYV Q D  +  LTV
Sbjct:   107 MGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIG-PFMHRISGYVYQDDLFLGSLTV 165

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI-SG-----LSGGQRKRLA 112
             LEHL FMA L +DRR +  E    I  ++E  G+    Q +I SG     LSGG+RKRLA
Sbjct:   166 LEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLA 225

Query:   113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
              AV+LL  P ILFCDEPTTGLDSYSA  +V  L +LA +   ++C IHQP+S +F+ F+ 
Sbjct:   226 FAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNN 285

Query:   173 V 173
             V
Sbjct:   286 V 286

GO:0006727 "ommochrome biosynthetic process" evidence=NAS;IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

WB|WBGene00012925 wht-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 357 (130.7 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 84/182 (46%), Positives = 112/182 (61%)

Query:     1 MSPSGAGKTTLLAALNKR-VKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             M  SGAGKTTLL  L +R ++GL V+GEIL+NG  I + V S +S YV Q+D  +  LTV
Sbjct:    66 MGASGAGKTTLLNTLLQRNLRGLQVEGEILVNGQNIGKGVTS-VSAYVQQEDLFMGTLTV 124

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS------GLSGGQRKRLA 112
              EHL   AKL +   T+       +  VM  + +   R  +I       G+SGG+ KRLA
Sbjct:   125 KEHLDIQAKLRLPPGTSTTARATRVNEVMNEMLLEKPRDSRIGVPGIKKGISGGEMKRLA 184

Query:   113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFD 171
              A +++  P I+FCDEPTTGLDS+ +  VV  L+Q+A E  + +IC IHQP+S VFE FD
Sbjct:   185 FATEMINNPPIIFCDEPTTGLDSHMSLQVVKTLEQMALEKGKTIICTIHQPSSEVFEIFD 244

Query:   172 TV 173
              V
Sbjct:   245 KV 246

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0000241 bw "brown" [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 74/171 (43%), Positives = 112/171 (65%)

Query:     4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
             SGAGKTTLLAA+++R++G + G+++LNG  + R  M+RIS ++ Q +  ++  T  EHL 
Sbjct:    68 SGAGKTTLLAAISQRLRGNLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLY 127

Query:    64 FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQI 123
             FM+   M RRTT  E  + +  ++  +G+      +I  LSGG+RKRL+LA +L+T+P  
Sbjct:   128 FMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITDPIF 187

Query:   124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             LFCDEPTTGLDS+SA +V+  L+ L    RI   +++Q   G  + F+T S
Sbjct:   188 LFCDEPTTGLDSFSAYSVIKTLRHLCTRRRIAKHSLNQ-VYGE-DSFETPS 236

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0006728 "pteridine biosynthetic process" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 348 (127.6 bits), Expect = 6.2e-31, P = 6.2e-31
 Identities = 83/182 (45%), Positives = 110/182 (60%)

Query:     1 MSPSGAGKTTLLAALNKR-VKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             + PSGAGKTTLL  L KR +  L   G + +NG    R+ M ++  YV Q D  I  LTV
Sbjct:    98 IGPSGAGKTTLLNVLTKRNLSNLKATGSVKVNGIRAERSYMRQVCAYVQQDDCFIGSLTV 157

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
              EHL+FMAKL M       E  + +  VM +LG+       I      G+SGG++KRLA 
Sbjct:   158 EEHLKFMAKLKMGSEYDLNEQERRVKSVMRSLGLEKIADSIIGTRTRKGISGGEKKRLAF 217

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVICAIHQPTSGVFEKFD 171
             A ++LT P IL CDEPT+GLDS+ A  VV +LK+LA E+R   ++  IHQP+S VF+ FD
Sbjct:   218 ASEILTSPPILICDEPTSGLDSFLAYQVVCVLKKLA-ETRNMTILLTIHQPSSQVFQLFD 276

Query:   172 TV 173
              +
Sbjct:   277 RI 278

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 342 (125.4 bits), Expect = 2.8e-30, P = 2.8e-30
 Identities = 79/183 (43%), Positives = 110/183 (60%)

Query:     1 MSPSGAGKTTLLAALNKRVKGLVQ----GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
             M  SGAGKTTLL AL  R    +Q    G  LLNG P+    M     YV Q D  I  L
Sbjct:   129 MGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSL 188

Query:    57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV------QISGLSGGQRKR 110
             T  EHL F A + M R  T+ +    + +V++ L ++  +        ++ GLSGG+RKR
Sbjct:   189 TAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKR 248

Query:   111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
             LA A + LT+P +L CDEPT+GLDS++A++VV +LK+L+ + + VI  IHQP+S +FE F
Sbjct:   249 LAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELF 308

Query:   171 DTV 173
             D +
Sbjct:   309 DKI 311

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

DICTYBASE|DDB_G0282103 abcG24 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 344 (126.2 bits), Expect = 5.4e-30, P = 5.4e-30
 Identities = 79/184 (42%), Positives = 115/184 (62%)

Query:     1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
             M  SG+GKT+LL  L+ R   G + G++L+NG P+ +    RISGYV Q D  I  LT  
Sbjct:   496 MGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAPVGKN-FKRISGYVTQDDIQIGTLTCR 554

Query:    60 EHLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
             EHL F A L +    + LE+ +  +  V+E LG+       I      G+SGG+R+RL++
Sbjct:   555 EHLMFAALLKLPENMS-LEIKQQRVASVLEELGLTRVADNPIGTSEKRGISGGERRRLSI 613

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES----RIVICAIHQPTSGVFEK 169
             A +L+ +P ILF DEPT+GLDS+SA+ ++  LKQLA  S    R +I +IHQP++ +FE+
Sbjct:   614 ATELIVDPSILFIDEPTSGLDSHSASELITKLKQLANNSTKGQRTIIFSIHQPSAELFEQ 673

Query:   170 FDTV 173
             FD +
Sbjct:   674 FDNL 677

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1351659 Abcg5 "ATP-binding cassette, sub-family G (WHITE), member 5" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 6.5e-30, P = 6.5e-30
 Identities = 73/181 (40%), Positives = 109/181 (60%)

Query:     1 MSPSGAGKTTLLAALNKRVK--GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             +  SG+GKTTLL A++ R++  G ++GE+ +NGC + R        YV Q D  +  LTV
Sbjct:    86 LGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCFSYVLQSDVFLSSLTV 145

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
              E L++ A L + R +     NK +  VM  L ++H     I      G+S G+R+R+++
Sbjct:   146 RETLRYTAMLALCRSSADF-YNKKVEAVMTELSLSHVADQMIGSYNFGGISSGERRRVSI 204

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
             A QLL +P+++  DEPTTGLD  +AN +V LL +LA   RIVI  IHQP S +F+ FD +
Sbjct:   205 AAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARRDRIVIVTIHQPRSELFQHFDKI 264

Query:   174 S 174
             +
Sbjct:   265 A 265

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007588 "excretion" evidence=ISO;IMP

GO:0010949 "negative regulation of intestinal phytosterol absorption" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO;IMP

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IMP

GO:0030299 "intestinal cholesterol absorption" evidence=IC

GO:0033344 "cholesterol efflux" evidence=ISO;IMP

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0045796 "negative regulation of intestinal cholesterol absorption" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 6.6e-30, P = 6.6e-30
 Identities = 75/181 (41%), Positives = 115/181 (63%)

Query:     1 MSPSGAGKTTLL--AALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             + P+G GK++LL   A  K   GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct:    78 LGPTGGGKSSLLDILAARKDPHGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 135

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
              E+LQF A L +    T  E N+ I +V++ LG++     ++      G+SGG+RKR ++
Sbjct:   136 RENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 195

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
             A++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct:   196 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 255

Query:   174 S 174
             +
Sbjct:   256 T 256

GO:0005886 "plasma membrane" evidence=IEA

GO:0046415 "urate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 6.7e-30, P = 6.7e-30
 Identities = 75/181 (41%), Positives = 115/181 (63%)

Query:     1 MSPSGAGKTTLL--AALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             + P+G GK++LL   A  K   GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct:    81 LGPTGGGKSSLLDILAARKDPHGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 138

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
              E+LQF A L +    T  E N+ I +V++ LG++     ++      G+SGG+RKR ++
Sbjct:   139 RENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSI 198

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
             A++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct:   199 AMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSL 258

Query:   174 S 174
             +
Sbjct:   259 T 259

GO:0046415 "urate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9P696 ABCG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 74/181 (40%), Positives = 114/181 (62%)

Query:     1 MSPSGAGKTTLLAAL--NKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
             + P+G GK++LL  L   K   GL  G++L+NG P         SGYV Q D ++  LTV
Sbjct:    79 LGPTGGGKSSLLDVLAARKDPHGL-SGDVLINGAPRPANFKCN-SGYVVQDDVVMGTLTV 136

Query:    59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLAL 113
              E+LQF A L +    T  E N+ I +V++ LG++     ++      G+SGG+RKR ++
Sbjct:   137 RENLQFSAALRLPTTMTSHEKNERINKVIQQLGLDKVADSKVGTQFIRGVSGGERKRTSI 196

Query:   114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
              ++L+T+P ILF DEPTTGLDS +AN V+ LLK+++ + R +I +IHQP   +F+ FD++
Sbjct:   197 GMELITDPAILFLDEPTTGLDSSTANAVLLLLKRMSEQGRTIIFSIHQPRYSIFKLFDSL 256

Query:   174 S 174
             +
Sbjct:   257 T 257

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	197
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-66
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-60
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-58
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	1e-49
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-47
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	8e-43
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-36
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-35
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-29
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-29
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-28
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-28
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-27
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-27
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-27
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	7e-27
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-26
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-26
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	7e-26
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-25
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-25
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	6e-25
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-23
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-22
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-22
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-22
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-22
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	7e-22
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	7e-22
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-21
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-21
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-21
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	3e-21
pfam00005	119	pfam00005, ABC_tran, ABC transporter	4e-21
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	8e-21
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	9e-21
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-20
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-20
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-20
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-20
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	4e-20
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-20
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	9e-20
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-19
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-19
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-19
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-19
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	6e-19
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	7e-19
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-18
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-18
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-18
COG4133	209	COG4133, CcmA, ABC-type transport system involved	6e-18
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	6e-18
COG1123	539	COG1123, COG1123, ATPase components of various ABC	6e-18
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	8e-18
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-17
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-17
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-17
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-17
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-17
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-17
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-17
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-17
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-17
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-17
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	6e-17
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	8e-17
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	8e-17
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	9e-17
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-16
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-16
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-16
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-16
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-16
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	3e-16
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-16
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	5e-16
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-16
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	7e-16
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	7e-16
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	8e-16
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	8e-16
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-15
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	1e-15
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-15
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-15
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-15
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-15
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	2e-15
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-15
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-15
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-15
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	5e-15
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	7e-15
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	9e-15
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	9e-15
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-14
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-14
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-14
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-14
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-14
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-14
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-14
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-14
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-14
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-14
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	5e-14
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-13
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-13
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-13
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-13
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-13
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	1e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-13
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-13
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-13
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-13
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-13
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-13
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-13
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-13
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	5e-13
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	5e-13
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-13
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	8e-13
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	9e-13
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-12
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-12
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-12
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-12
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-12
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-12
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-12
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-12
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	4e-12
COG4598	256	COG4598, HisP, ABC-type histidine transport system	5e-12
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	6e-12
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	6e-12
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	6e-12
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	7e-12
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	7e-12
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-12
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	9e-12
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-11
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	1e-11
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	1e-11
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-11
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-11
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-11
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-11
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-11
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-11
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	4e-11
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-11
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	6e-11
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-11
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	7e-11
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	7e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	8e-11
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-10
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-10
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-10
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-10
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-10
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-10
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-10
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-10
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-10
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-10
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-10
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	3e-10
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	4e-10
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-10
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	4e-10
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	6e-10
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	6e-10
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	8e-10
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	9e-10
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	1e-09
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-09
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-09
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-09
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-09
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-09
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-09
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	1e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-09
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-09
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-09
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-09
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-09
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-09
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-09
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	2e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-09
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	2e-09
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-09
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	2e-09
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-09
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	3e-09
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	5e-09
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	5e-09
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	5e-09
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	5e-09
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-09
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	6e-09
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	7e-09
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	7e-09
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	8e-09
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	8e-09
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	9e-09
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-08
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-08
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-08
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-08
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-08
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	2e-08
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-08
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-08
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	4e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-08
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	4e-08
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-08
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	4e-08
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	4e-08
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	5e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	6e-08
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	6e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	6e-08
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	8e-08
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	9e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	9e-08
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	9e-08
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-07
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	1e-07
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	1e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-07
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	1e-07
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-07
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-07
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-07
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-07
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	3e-07
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	3e-07
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-07
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	3e-07
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-07
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	4e-07
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	5e-07
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	5e-07
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	5e-07
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	5e-07
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	5e-07
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	6e-07
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	6e-07
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	7e-07
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	8e-07
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-06
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-06
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-06
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-06
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-06
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	3e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-06
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	4e-06
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	5e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	5e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-06
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-06
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	6e-06
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	6e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	7e-06
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	7e-06
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	8e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-05
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-05
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-05
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-05
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	3e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	4e-05
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	5e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	6e-05
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	7e-05
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	7e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	8e-05
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	8e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	8e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-04
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	2e-04
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	3e-04
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	5e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	5e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	6e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	6e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	8e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	0.001
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.001
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.002
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.002
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	0.002
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	0.002
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	0.002
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	0.003
cd03241	276	cd03241, ABC_RecN, ATP-binding cassette domain of	0.003
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	0.003

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  214 bits (547), Expect = 1e-66
 Identities = 97/205 (47%), Positives = 126/205 (61%), Gaps = 9/205 (4%)

Query: 1   MSPSGAGKTTLLAAL-NKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           M  SGAGKTTL+ AL  +  KG+   G +LLNG PI    M  IS YV Q D  I  LTV
Sbjct: 57  MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI------SGLSGGQRKRLA 112
            EHL F A L M RR T  E  + +  V++ LG+      +I       GLSGG+RKRLA
Sbjct: 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLA 176

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
            A +LLT+P +LFCDEPT+GLDS+ A +VV +LK LA + + +IC IHQP+S +FE FD 
Sbjct: 177 FASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDK 236

Query: 173 VSLLAHGGLLAYHGQVSKVLKHFAK 197
           + L+A  G +AY G   + +  F+ 
Sbjct: 237 IILMA-EGRVAYLGSPDQAVPFFSD 260

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  186 bits (474), Expect = 7e-60
 Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 4/189 (2%)

Query: 1   MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           +  SG+GKTTLL A++ RV   G   G+IL NG P       +   YV Q D L+  LTV
Sbjct: 39  LGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98

Query: 59  LEHLQFMAKLTMDRRTTWLELNK-TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            E L + A L + R+++     K     ++ +L +       + G+SGG+R+R+++AVQL
Sbjct: 99  RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
           L +P++L  DEPT+GLDS++A N+V+ L QLA  +RIVI  IHQP S +F  FD + LL 
Sbjct: 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL- 217

Query: 178 HGGLLAYHG 186
             G + Y G
Sbjct: 218 SSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  181 bits (462), Expect = 2e-58
 Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 34/187 (18%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           M PSGAGK+TLL AL  R  GL V GE+L+NG P+ +    +I GYV Q D L   LTV 
Sbjct: 41  MGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E L F AKL                                 GLSGG+RKR+++A++L++
Sbjct: 101 ETLMFAAKL--------------------------------RGLSGGERKRVSIALELVS 128

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
            P +LF DEPT+GLDS SA  V++LL++LA   R +IC+IHQP+S +FE FD + LL+ G
Sbjct: 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188

Query: 180 GLLAYHG 186
             + Y G
Sbjct: 189 R-VIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  158 bits (403), Expect = 1e-49
 Identities = 80/187 (42%), Positives = 101/187 (54%), Gaps = 34/187 (18%)

Query: 1   MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           M  SGAGKTTLL  L  R   G++ GEIL+NG P+ +    R +GYV QQD     LTV 
Sbjct: 39  MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-FQRSTGYVEQQDVHSPNLTVR 97

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E L+F A L                                 GLS  QRKRL + V+L  
Sbjct: 98  EALRFSALL--------------------------------RGLSVEQRKRLTIGVELAA 125

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
           +P ILF DEPT+GLDS +A N+V  LK+LA   + ++C IHQP++ +FEKFD + LL  G
Sbjct: 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185

Query: 180 GLLAYHG 186
           G   Y G
Sbjct: 186 GKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  154 bits (392), Expect = 9e-47
 Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS--RISGYVAQQDFLIEELTVLE 60
           P+GAGKTTLL  L   +K    GEIL+ G  + +      R  GYV Q+  L  ELTV E
Sbjct: 39  PNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           +L+F A+L      +  E  + I  ++E  G+  +   ++  LSGG ++RL++A+ LL +
Sbjct: 98  NLEFFARL---YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P++L  DEPT+GLD  S   +  LL++LA E  + I           E  D V +L  G 
Sbjct: 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214

Query: 181 LLAYHGQVSKVLKHFAK 197
           ++A  G   ++ + F  
Sbjct: 215 IIAE-GTPEELKEKFGG 230

Length = 293

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  152 bits (386), Expect = 8e-43
 Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 8/197 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           M  SGAGKTTLL  L +RV   V   G+ L+NG P+  +   R  GYV QQD  +   TV
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQRSIGYVQQQDLHLPTSTV 853

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALA 114
            E L+F A L   +  +  E  + +  V++ L +       +     GL+  QRKRL + 
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913

Query: 115 VQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           V+L+ +P+ +LF DEPT+GLDS +A ++  L+++LA   + ++C IHQP++ +FE+FD +
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973

Query: 174 SLLAHGGLLAYHGQVSK 190
            LL  GG   Y G + +
Sbjct: 974 LLLQKGGQTVYFGDLGE 990

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  134 bits (340), Expect = 1e-36
 Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 10/205 (4%)

Query: 1    MSPSGAGKTTLLAAL-NKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
            M  SGAGKTTL+  L  ++  G ++G+I ++G P  +   +RISGY  Q D    ++TV 
Sbjct: 912  MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971

Query: 60   EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV-----QISGLSGGQRKRLALA 114
            E L + A L + +  +  E    +  VME + +++ +        ++GLS  QRKRL +A
Sbjct: 972  ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031

Query: 115  VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
            V+L+  P I+F DEPT+GLD+ +A  V+  ++      R V+C IHQP+  +FE FD + 
Sbjct: 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091

Query: 175  LLAHGGLLAYHGQVS----KVLKHF 195
            L+  GG + Y G +     K++++F
Sbjct: 1092 LMKRGGQVIYSGPLGRNSHKIIEYF 1116

Length = 1470

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  129 bits (325), Expect = 6e-35
 Identities = 72/201 (35%), Positives = 115/201 (57%), Gaps = 8/201 (3%)

Query: 1   MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           + PSG+GK+TLL AL  R++G    G IL N    ++ ++ R  G+V Q D L   LTV 
Sbjct: 100 LGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVR 158

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALA 114
           E L F + L + +  T  E       V+  LG+            I G+SGG+RKR+++A
Sbjct: 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
            ++L  P +L  DEPT+GLD+ +A  +V  L  LA + + ++ ++HQP+S V++ FD+V 
Sbjct: 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL 278

Query: 175 LLAHGGLLAYHGQVSKVLKHF 195
           +L+ G  L + G+ S  + +F
Sbjct: 279 VLSEGRCL-FFGKGSDAMAYF 298

Length = 659

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  108 bits (272), Expect = 1e-29
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 19/186 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---VMSRISGYVAQ--QDFLIE 54
           P+G+GK+TLL  LN    GL+    GE+L++G  +++     + R  G V Q   D    
Sbjct: 35  PNGSGKSTLLRLLN----GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90

Query: 55  ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
             TV E + F +  L +       E+ + +   +E +G+   R      LSGGQ++R+A+
Sbjct: 91  -PTVEEEVAFGLENLGLPEE----EIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAI 145

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  L  +P IL  DEPT GLD      ++ LLK+L  E + +I   H     + E  D V
Sbjct: 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRV 204

Query: 174 SLLAHG 179
            +L  G
Sbjct: 205 IVLEDG 210

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  106 bits (268), Expect = 4e-29
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISGYVAQQDFLIEELT 57
           P+GAGKTTL+  L      L     G I ++G         + R  GY+ Q+  +    T
Sbjct: 33  PNGAGKTTLMRIL----ATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V E L ++A L   +     E+   +  V+E + +  R + +I  LSGG R+R+ +A  L
Sbjct: 89  VREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL 145

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
           + +P IL  DEPT GLD        NLL +L  E RIVI + H     V    + V++L 
Sbjct: 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHI-VEDVESLCNQVAVL- 202

Query: 178 HGGLLAYHG 186
           + G L + G
Sbjct: 203 NKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  106 bits (268), Expect = 1e-28
 Identities = 66/203 (32%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVAQQ-----DFLIEEL 56
           P+GAGK+TLL A+   +K    GEI + G P+  R    RI GYV Q+      F I   
Sbjct: 38  PNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRI-GYVPQKSSVDRSFPI--- 92

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRKRL 111
           TV +    +  L    +  W           +   +E +G+   R  QI  LSGGQ++R+
Sbjct: 93  TVKD----VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171
            LA  L   P +L  DEP TG+D      + +LLK+L  E + V+   H     V   FD
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFD 207

Query: 172 TVSLLAHGGLLAYHGQVSKVLKH 194
            V  L     L   G   +VL  
Sbjct: 208 RVICLNRH--LIASGPPEEVLTE 228

Length = 254

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  104 bits (261), Expect = 6e-28
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)

Query: 1   MSPSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQD 50
           + PSG+GK+TLL     L++       GE+ ++G  IS+     ++       G+V Q  
Sbjct: 36  VGPSGSGKSTLLNILGGLDR----PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
            L+ +LT LE+++    L    +    E       ++E +G+  R     S LSGGQ++R
Sbjct: 92  NLLPDLTALENVELPLLLAGVPKKERRER---AEELLERVGLGDRLNHYPSELSGGQQQR 148

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEK 169
           +A+A  L  +P+I+  DEPT  LDS +   V+ LL++L  E+   ++   H P   + E 
Sbjct: 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE--LAEY 206

Query: 170 FDTV 173
            D +
Sbjct: 207 ADRI 210

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  103 bits (259), Expect = 1e-27
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI--SRTVMSRISGYVAQQDFLIEELT 57
            +GAGKTT L  L     G ++   G   +NG  I   R    +  GY  Q D L +ELT
Sbjct: 36  HNGAGKTTTLKMLT----GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V EHL+F A+L   +     E+ + +  ++  LG+  +   +   LSGG +++L+LA+ L
Sbjct: 92  VREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL 148

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +  P +L  DEPT+GLD  S   + +L+ ++     I++
Sbjct: 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIIL 187

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  102 bits (257), Expect = 2e-27
 Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQ-----DFLIE 54
           P+GAGK+TLL    K + GL+    G I + G P+ +    RI GYV Q+     DF I 
Sbjct: 33  PNGAGKSTLL----KAILGLLKPTSGSIRVFGKPLEKER-KRI-GYVPQRRSIDRDFPI- 85

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRK 109
             +V +    +  + +                 +   +E +G++     QI  LSGGQ++
Sbjct: 86  --SVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQ 139

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
           R+ LA  L+ +P +L  DEP  G+D  +  ++  LL++L  E   ++   H     V E 
Sbjct: 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEY 198

Query: 170 FDTVSLLAHGGLLAYHG 186
           FD V LL     +   G
Sbjct: 199 FDRVLLLNRT--VVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  102 bits (257), Expect = 2e-27
 Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS------RTVMSRIS-GYVAQQD 50
           + PSG+GK+TLL  L     GL +   GE+L+NG  ++         + R   G+V Q  
Sbjct: 37  VGPSGSGKSTLLNLLG----GLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF 92

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRK 109
            L+ +LTVLE+++    +            +    ++E LG+  R   +  S LSGGQ++
Sbjct: 93  NLLPDLTVLENVELPLLIAGKSAG---RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFE 168
           R+A+A  L+  P+I+  DEPT  LDS +A  V+ LL++L  E  + +I   H P   + +
Sbjct: 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAK 207

Query: 169 KFDTVSLLAHGGL 181
             D V  L  G +
Sbjct: 208 YADRVIELKDGKI 220

Length = 226

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  101 bits (254), Expect = 7e-27
 Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 20/202 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR----TVMSRISGYVAQ--QDFLI 53
           P+G+GK+TLL  LN    GL++   GE+L++G   S       + +  G V Q   D L 
Sbjct: 38  PNGSGKSTLLKLLN----GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
              TV + + F  +     R    E+ + +   +E +G+          LSGGQ++R+A+
Sbjct: 94  GP-TVEDEVAFGLENLGLPRE---EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAI 149

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
           A  L   P+IL  DEPT GLD      ++ LLK+L  E    +I   H     V E  D 
Sbjct: 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADR 208

Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
           V +L  G +L   G  +++   
Sbjct: 209 VVVLDDGKIL-ADGDPAEIFND 229

Length = 235

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  100 bits (251), Expect = 1e-26
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
           +  SG+GK+TLL  +   ++    G++ LNG         + S       GY+ Q   LI
Sbjct: 30  IGESGSGKSTLLNIIGL-LEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALI 88

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           E  TV E+L    K     +    E  +     +E +G+N + + +I  LSGG+++R+AL
Sbjct: 89  ENETVEENLDLGLKYKKLSKK---EKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVAL 145

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  +L  P ++  DEPT  LD  + + V++LL +L  E + +I   H P   V ++ D V
Sbjct: 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRV 203

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  101 bits (253), Expect = 2e-26
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 14/169 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
           P+G+GK+TLL  L   +     GE+LL+G  I   S   +++   YV Q       LTV 
Sbjct: 36  PNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94

Query: 60  EHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
           E    +  L                   +   +E LG+ H     +  LSGG+R+R+ +A
Sbjct: 95  E----LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA 150

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQP 162
             L  E  IL  DEPT+ LD      V+ LL+ L  E  + +  + H  
Sbjct: 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199

Length = 258

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 27/179 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQDFL 52
           PSGAGK+TLL  LN    GLV+   G +L++G  I+       R +  +I G + QQ  L
Sbjct: 35  PSGAGKSTLLRCLN----GLVEPTSGSVLIDGTDINKLKGKALRQLRRQI-GMIFQQFNL 89

Query: 53  IEELTVLEHLQFMAKLTMDRRTTW---LELNKTITRV-----MENLGINHRRQVQISGLS 104
           IE L+VLE++    +L   RR+TW     L     +      +E +G+  +   +   LS
Sbjct: 90  IERLSVLENV-LSGRL--GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLS 146

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQP 162
           GGQ++R+A+A  L+ +P+++  DEP   LD  S+  V++LLK++  E  I VI ++HQ 
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 97.1 bits (243), Expect = 1e-25
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 50/160 (31%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT---VMSRISGYVAQQDFLIEEL 56
           P+GAGKTTL+  +     GL++   GEI + G  I +    V  RI GY+ ++  L E L
Sbjct: 34  PNGAGKTTLIKIIL----GLLKPDSGEIKVLGKDIKKEPEEVKRRI-GYLPEEPSLYENL 88

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E+L+                                       LSGG ++RLALA  
Sbjct: 89  TVRENLK---------------------------------------LSGGMKQRLALAQA 109

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           LL +P++L  DEPT+GLD  S      LL++L  E + ++
Sbjct: 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 97.7 bits (244), Expect = 1e-25
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 15/164 (9%)

Query: 1   MSPSGAGKTTL---LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEEL 56
              +GAGKTTL   LA L K   G     ILLNG PI      +  GYV Q  D+ +   
Sbjct: 32  TGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERRKSIGYVMQDVDYQLFTD 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +V E L    K            N+    V+++L +   ++     LSGGQ++RLA+A  
Sbjct: 88  SVREELLLGLKELDAG-------NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA 140

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           LL+   +L  DEPT+GLD  +   V  L+++LA + + VI   H
Sbjct: 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 95.8 bits (239), Expect = 6e-25
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRTVMS--RISGYVAQQDFLIEEL 56
           +   G+G +TLL AL  R +G V   G+I  NG P             YV+++D     L
Sbjct: 39  LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E L F  +   +                            + G+SGG+RKR+++A  
Sbjct: 99  TVRETLDFALRCKGNE--------------------------FVRGISGGERKRVSIAEA 132

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV-ICAIHQPTSGVFEKFDTVSL 175
           L++   +L  D  T GLDS +A  ++  ++ +A   +     +++Q +  +++ FD V +
Sbjct: 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192

Query: 176 LAHGGLLAYHG 186
           L   G   Y+G
Sbjct: 193 LY-EGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 92.2 bits (230), Expect = 3e-23
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 31/200 (15%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS--------GYVAQQ 49
           + PSG+GK+TLL    + + GL++   GE+L++G  IS   +S           G + Q 
Sbjct: 32  IGPSGSGKSTLL----RLIVGLLRPDSGEVLIDGEDISG--LSEAELYRLRRRMGMLFQS 85

Query: 50  DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSGG 106
             L + LTV E++ F       R  T L   +    V+E L   G+     +  + LSGG
Sbjct: 86  GALFDSLTVFENVAFPL-----REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGG 140

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE---SRIVICAIHQPT 163
            +KR+ALA  L  +P++L  DEPT GLD  ++  + +L++ L  E   + I++   H   
Sbjct: 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT--HDLD 198

Query: 164 SGVFEKFDTVSLLAHGGLLA 183
           +  F   D +++L  G ++A
Sbjct: 199 T-AFAIADRIAVLYDGKIVA 217

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
           PSGAGK+TLL  +N R+     G ILL G  I+       R +  RI G + Q   LIE 
Sbjct: 36  PSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRI-GMIFQHYNLIER 93

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITR--------VMENLGINHRRQVQISGLSGGQ 107
           LTVLE++    +L    + TW  L    +          +E +G+  +   +   LSGGQ
Sbjct: 94  LTVLENV-LHGRLG--YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
           ++R+A+A  L  +P ++  DEP   LD  ++  V++ LK++  E  I VI  +HQ
Sbjct: 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 88.1 bits (219), Expect = 2e-22
 Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 52/160 (32%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           P+G+GK+TLL A+   +K    GEIL++G  I++                          
Sbjct: 33  PNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------------------------- 65

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
                                      L    RR   +  LSGGQR+R+ALA  LL  P 
Sbjct: 66  -------------------------LPLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100

Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           +L  DEPT+GLD  S   ++ LL++LA E R VI   H P
Sbjct: 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 92.5 bits (230), Expect = 5e-22
 Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRISG---YVAQQDFLIEEL 56
             G+G +TLL  +     G    V+G I  +G      +     G   Y A+ D     L
Sbjct: 95  RPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE-IKKHYRGDVVYNAETDVHFPHL 153

Query: 57  TVLEHLQFMAKL-TMDRR---TTWLELNKTITRV-MENLGINHRRQVQ-----ISGLSGG 106
           TV E L F A+  T   R    +  E  K I  V M   G++H R  +     + G+SGG
Sbjct: 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR-IVICAIHQPTSG 165
           +RKR+++A   L   +I   D  T GLDS +A   +  LK  A       + AI+Q +  
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273

Query: 166 VFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK 197
            +E FD V +L  G  + Y G   K  ++F K
Sbjct: 274 AYELFDKVIVLYEGYQI-YFGPADKAKQYFEK 304

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 89.6 bits (223), Expect = 6e-22
 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 36/204 (17%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNG---CPISRT----VMSRISGYVAQQD 50
           +  SG+GK+TLL    + + GL+   +GEIL++G     +S      +  R+ G + QQ 
Sbjct: 40  LGGSGSGKSTLL----RLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQG 94

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-------- 102
            L   LTV E++ F       R  T L  +     V+  L       V + G        
Sbjct: 95  ALFSSLTVFENVAFPL-----REHTKLPESLIRELVLMKL-----ELVGLRGAAADLYPS 144

Query: 103 -LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
            LSGG RKR+ALA  +  +P++LF DEPT+GLD  SA  +  L+++L     + VI   H
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204

Query: 161 QPTSGVFEKFDTVSLLAHGGLLAY 184
              S +    D V++LA G ++A 
Sbjct: 205 DLDS-LLTIADRVAVLADGKVIAE 227

Length = 263

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 87.5 bits (218), Expect = 7e-22
 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 43/186 (23%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLL  L   +K    GEILL+G  +   S   ++R   YV Q           
Sbjct: 33  PNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ----------- 80

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
                                      +E LG+ H      + LSGG+R+R+ LA  L  
Sbjct: 81  --------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ 114

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSLLAH 178
           EP IL  DEPT+ LD      ++ LL++LA E  + V+  +H          D V LL  
Sbjct: 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKD 173

Query: 179 GGLLAY 184
           G ++A 
Sbjct: 174 GRIVAQ 179

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 88.5 bits (220), Expect = 7e-22
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TL + L  R+    +G+I + G  + R     ++R+ G V QQ  L  +L+V 
Sbjct: 35  PNGAGKSTLFSLLT-RLYVAQEGQISVAGHDLRRAPRAALARL-GVVFQQPTLDLDLSVR 92

Query: 60  EHLQFMAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           ++L++ A L  + R     E    I  ++  LG+  R   ++  L+GG R+R+ +A  LL
Sbjct: 93  QNLRYHAALHGLSRA----EARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALL 148

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
             P +L  DEPT GLD  S   +   ++ LA +  + V+ A H
Sbjct: 149 HRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATH 191

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 85.7 bits (213), Expect = 2e-21
 Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 45/185 (24%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS-----RISGYVAQQDFLIEE 55
           + PSG+GK+TLL  +    +    G IL++G  ++          R  G V Q   L   
Sbjct: 32  LGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           LTVLE++                                       GLSGGQ++R+ALA 
Sbjct: 91  LTVLENIAL-------------------------------------GLSGGQQQRVALAR 113

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVS 174
            L  +P +L  DEPT+ LD  +   V  LLK L  +  I V+   H          D V 
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVV 172

Query: 175 LLAHG 179
           +L  G
Sbjct: 173 VLRDG 177

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS---RTVMSRISGYVAQQDFLIEEL 56
           P+GAGKTT L    + + GL++   G   ++G  +         R+ G+V+    L + L
Sbjct: 39  PNGAGKTTTL----RMLAGLLEPDAGFATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRL 93

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           T  E+L++ A L   +     EL   +  + + LG+      ++ G S G R+++A+A  
Sbjct: 94  TARENLEYFAGLYGLKGD---ELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           L+ +P +L  DEPTTGLD  +   +   ++QL    + ++ + H     V    D V +L
Sbjct: 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERLCDRVVVL 209

Query: 177 AHGGLLA 183
             G ++ 
Sbjct: 210 HRGRVVY 216

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 86.9 bits (216), Expect = 3e-21
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 19/201 (9%)

Query: 4   SGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
           SGAGK+TL+  +N    GL     G +L++G  ++       R    RI G + Q   L+
Sbjct: 40  SGAGKSTLIRCIN----GLERPTSGSVLVDGTDLTLLSGKELRKARRRI-GMIFQHFNLL 94

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
              TV E++    ++    +    E+ + +  ++E +G+  +     + LSGGQ++R+ +
Sbjct: 95  SSRTVFENVALPLEIAGVPKA---EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGI 151

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  L   P++L CDE T+ LD  +  +++ LL+ +  E  + I  I      V    D V
Sbjct: 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211

Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
           +++  G ++   G V +V  +
Sbjct: 212 AVMEKGEVVEE-GTVEEVFAN 231

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 86.6 bits (215), Expect = 3e-21
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 7/154 (4%)

Query: 3   PSGAGKTTLL---AALNKRVKGLVQ--GEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
           PSG+GKTTLL     L    +G ++  G+ L          + R  GY+ Q   L+  LT
Sbjct: 39  PSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
             +++Q MA L +    ++ E  +    ++E +G+          LSGGQ++R+A+A  L
Sbjct: 99  ARQNVQ-MA-LELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           +  P+++  DEPT  LDS S  +VV L+++LA E
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 83.5 bits (207), Expect = 4e-21
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 9   TTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTVLEHLQF 64
           +TLL  +   ++    G ILL+G   +     ++     G V Q   L  ELTV E+L F
Sbjct: 1   STLLKLITGLLQP-TSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59

Query: 65  MAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQI 123
                +  +    E +      +E +G+     +  +  LSGGQ++R+A+A  LL +P++
Sbjct: 60  ----GLRDK----EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111

Query: 124 LFCDEPTT 131
           L  DEPT 
Sbjct: 112 LLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 19/174 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MSRISGYVAQQDFLIEEL 56
           PSGAGK+TLL +LN  V     GEIL NG  I++        + R  G + QQ  L+  L
Sbjct: 38  PSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL 96

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITR--------VMENLGINHRRQVQISGLSGGQR 108
           +VLE++    +L     +TW  L    ++         +E +GI  +   + S LSGGQ+
Sbjct: 97  SVLENVLL-GRL--GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
           +R+A+A  L+ +P+I+  DEP   LD  SA  V+++LK +  E  I VI  +HQ
Sbjct: 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207

Length = 258

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 85.6 bits (213), Expect = 9e-21
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 17/168 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTV----MSRISGYVAQQDFLIEE 55
           PSG+GK+TLL  LN    GL     G I ++G  +        + R  G V QQ  L   
Sbjct: 36  PSGSGKSTLLRCLN----GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91

Query: 56  LTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           LTVLE++    +    + +     E  +    ++E +G+  +     + LSGGQ++R+A+
Sbjct: 92  LTVLENVTLAPVKVKKLSKA----EAREKALELLEKVGLADKADAYPAQLSGGQQQRVAI 147

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           A  L  +P+++  DEPT+ LD      V++++K LA E   +I   H+
Sbjct: 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195

Length = 240

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY-----VAQQDF-LIEEL 56
           PSGAGK+TLL  + K       G I +NG  +S      I        V  QDF L+ + 
Sbjct: 35  PSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
            V E++ F  ++T           K +   +E +G++H+ +   + LSGG+++R+A+A  
Sbjct: 94  NVYENVAFALEVTGVPPREI---RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           ++  P IL  DEPT  LD  +   ++NLLK++      V+ A H
Sbjct: 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 84.8 bits (211), Expect = 2e-20
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 23/197 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
           P+GAGKTTL   ++    G ++   G +L +G  I+      I+    G   Q   L  E
Sbjct: 34  PNGAGKTTLFNLIS----GFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89

Query: 56  LTVLEHLQFMAKLTMDRRTTWL---------ELNKTITRVMENLGINHRRQVQISGLSGG 106
           LTVLE++  M        +  L         E  +    ++E +G+          LS G
Sbjct: 90  LTVLENV--MVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYG 147

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
           Q++RL +A  L T+P++L  DEP  GL+      +  L+++L  E  I +  +      V
Sbjct: 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVV 206

Query: 167 FEKFDTVSLLAHGGLLA 183
               D V++L  G ++A
Sbjct: 207 MSLADRVTVLDQGRVIA 223

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 83.7 bits (208), Expect = 3e-20
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 20/172 (11%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS------RTVMSRISGYVAQQDF 51
           + PSG+GK+TLL  +N     L     G I+++G  ++        +  ++ G V QQ  
Sbjct: 32  IGPSGSGKSTLLRCIN----LLEEPDSGTIIIDGLKLTDDKKNINELRQKV-GMVFQQFN 86

Query: 52  LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
           L   LTVLE++    +    M +     E  +    ++E +G+  +     + LSGGQ++
Sbjct: 87  LFPHLTVLENITLAPIKVKGMSKA----EAEERALELLEKVGLADKADAYPAQLSGGQQQ 142

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           R+A+A  L   P+++  DEPT+ LD      V++++K LA E   ++   H+
Sbjct: 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 82.8 bits (206), Expect = 3e-20
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 54/183 (29%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
           PSG+GK+TLL  L      L     GEIL++G  +       + +   YV Q  FL    
Sbjct: 36  PSGSGKSTLLKLLL----RLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---- 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
                                  + TI    EN+            LSGGQR+R+A+A  
Sbjct: 88  ----------------------FSGTI---RENI------------LSGGQRQRIAIARA 110

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           LL +P IL  DE T+ LD  +   ++  L+ LA    +++ A H+ ++      D + +L
Sbjct: 111 LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA-HRLST--IRDADRIIVL 167

Query: 177 AHG 179
             G
Sbjct: 168 DDG 170

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 83.7 bits (208), Expect = 4e-20
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 14/153 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
           P+GAGKTT        + GLV    G+ILL+G  I++  M + +    GY+ Q+  +  +
Sbjct: 34  PNGAGKTTTF----YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           LTV E++  + ++    +    E  +    ++E   I H R+ + S LSGG+R+R+ +A 
Sbjct: 90  LTVEENILAVLEIRGLSKKEREEKLEE---LLEEFHITHLRKSKASSLSGGERRRVEIAR 146

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
            L T P+ L  DEP  G+D  +  ++  ++K L
Sbjct: 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 84.0 bits (208), Expect = 5e-20
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
            +GAGKTTLL  +   +     G++ ++G    R    V  +I G +  +  L   LT  
Sbjct: 36  ENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKI-GVLFGERGLYARLTAR 93

Query: 60  EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           E+L++ A+L  + R+    E+   I  + + L +      ++   S G ++++A+A  L+
Sbjct: 94  ENLKYFARLNGLSRK----EIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            +P IL  DEPT+GLD  +     + +KQL  E R VI + H
Sbjct: 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191

Length = 245

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 84.6 bits (210), Expect = 9e-20
 Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 17/201 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEEL 56
            SGAGK+TLL  +N  ++    G + ++G  ++         + +  G + Q   L+   
Sbjct: 40  YSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98

Query: 57  TVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           TV E++ F  +L  + +     E+ + +  ++E +G++ +     + LSGGQ++R+A+A 
Sbjct: 99  TVFENVAFPLELAGVPKA----EIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPTSGVFEKF-DTV 173
            L   P+IL CDE T+ LD  +  +++ LLK +  E  + I  I H+    V ++  D V
Sbjct: 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME--VVKRICDRV 212

Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
           ++L   G L   G VS+V  +
Sbjct: 213 AVL-DQGRLVEEGTVSEVFAN 232

Length = 339

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGKTT +  L   +K    G   + G  +    R V  RI G V Q   + +ELT  
Sbjct: 34  PNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRI-GIVFQDLSVDDELTGW 91

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E+L   A+L         E  + I  +++ +G+       +   SGG R+RL +A  L+ 
Sbjct: 92  ENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQL 148
            P++LF DEPT GLD  +  +V   +++L
Sbjct: 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 84.6 bits (210), Expect = 2e-19
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIEELTVL 59
            SGAGK+TLL  L   +    QGEI +NG     +S     +   +V+Q  +L    T+ 
Sbjct: 355 ASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIR 412

Query: 60  EHLQFMA-KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           E++       + +     L+    +  V +  G++       +GLSGGQ +RLALA  LL
Sbjct: 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
           +   +L  DEPT  LD+ +   ++  L++LA + + V+   H+         D + +L +
Sbjct: 473 SPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLE--DAADADRIVVLDN 529

Query: 179 GGLLA 183
           G L+ 
Sbjct: 530 GRLVE 534

Length = 559

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 81.2 bits (201), Expect = 3e-19
 Identities = 51/186 (27%), Positives = 98/186 (52%), Gaps = 14/186 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGKTT +  +     G++    GE+L +G P+     +RI GY+ ++  L  ++ V+
Sbjct: 34  PNGAGKTTTIRMIL----GIILPDSGEVLFDGKPLDIAARNRI-GYLPEERGLYPKMKVI 88

Query: 60  EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           + L ++A+L  + +     E  + I   +E L ++     ++  LS G ++++     ++
Sbjct: 89  DQLVYLAQLKGLKKE----EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI 144

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
            +P++L  DEP +GLD  +   + +++++LA   + VI + HQ    V E  D V LL  
Sbjct: 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNK 203

Query: 179 GGLLAY 184
           G  + Y
Sbjct: 204 GRAVLY 209

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 16/165 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS--RISGYVAQQDFLIEELT 57
           P+G GKTTLL  L     GL++   GE+  NG  ++       R   Y+     L  EL+
Sbjct: 34  PNGIGKTTLLRIL----AGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            LE+L F A +    + T  +        +  +G+     +  + LS GQ++RLALA   
Sbjct: 90  ALENLHFWAAIHGGAQRTIEDA-------LAAVGLTGFEDLPAAQLSAGQQRRLALARLW 142

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           L+   +   DEPTT LD      +  LL+       IV+   HQ 
Sbjct: 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 81.1 bits (201), Expect = 6e-19
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 12/158 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           PSG GK+TLL      + GL +   GE+LL+G P++        GYV Q+D L+  LTVL
Sbjct: 37  PSGCGKSTLLRL----IAGLEKPTSGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLTVL 90

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           +++    +L   R  +  E  +    ++E +G+          LSGG R+R+A+A  L T
Sbjct: 91  DNVALGLEL---RGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
            P++L  DEP   LD+ +   + + L +L  E+R  + 
Sbjct: 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185

Length = 248

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 82.1 bits (203), Expect = 7e-19
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
           P+GAGKTT +  L   ++    G   + G  + R    V   I G V Q   + E+LT  
Sbjct: 27  PNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSI-GIVPQYASVDEDLTGR 84

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E+L+ M +L         E  +    ++E   +       +   SGG R+RL +A  L+ 
Sbjct: 85  ENLEMMGRL---YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH 141

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           +P +LF DEPTTGLD  +   + + ++ L  E   ++   H
Sbjct: 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 52/183 (28%), Positives = 98/183 (53%), Gaps = 14/183 (7%)

Query: 4    SGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTV 58
            +GAGKTT L+ L     GL+    G +L+ G  I      + +  G   Q + L   LTV
Sbjct: 965  NGAGKTTTLSILT----GLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020

Query: 59   LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
             EH+ F A+L   +  +W E    +  ++E+ G++H+R  +   LSGG +++L++A+  +
Sbjct: 1021 AEHILFYAQL---KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077

Query: 119  TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
             + +++  DEPT+G+D YS  ++ +LL +      I++   H   + +    D +++++ 
Sbjct: 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQ 1135

Query: 179  GGL 181
            G L
Sbjct: 1136 GRL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 78.7 bits (195), Expect = 3e-18
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 13/151 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
           PSG GKTTLL  +     GL     GEIL++G  ++      R  G V Q   L   LTV
Sbjct: 34  PSGCGKTTLLRLIA----GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89

Query: 59  LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            E++ F +    + +     E+   +  ++E +G+          LSGGQ++R+ALA  L
Sbjct: 90  AENIAFGLKLRGVPKA----EIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL 145

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
             EP +L  DEP + LD+     +   LK+L
Sbjct: 146 AREPSLLLLDEPLSALDAKLREELREELKEL 176

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 78.5 bits (194), Expect = 5e-18
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 18/199 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS---RISGYVAQQDFLIEEL 56
           P+G+GK+ LL    + + G ++   G+ILLNG  I  T +    R   YV Q   L   +
Sbjct: 33  PTGSGKSVLL----ETIAGFIKPDSGKILLNGKDI--TNLPPEKRDISYVPQNYALFPHM 86

Query: 57  TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           TV +++ + + K  +D+     E+ + +  + E LGI+H    +   LSGG+++R+A+A 
Sbjct: 87  TVYKNIAYGLKKRKVDK----KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIAR 142

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
            L+  P+IL  DEP + LD  +   +   LK++  E  + +  +       +   D V++
Sbjct: 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI 202

Query: 176 LAHGGLLAYHGQVSKVLKH 194
           + +G L+   G+  +V K 
Sbjct: 203 MLNGKLIQV-GKPEEVFKK 220

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRISGYVAQQDFLIEELT 57
           P+GAGKTTLL  L     GL++   GE+   G PI   R    +   Y+  Q  +  ELT
Sbjct: 36  PNGAGKTTLLRIL----AGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            LE+L F  +              TI   +  +G+     + +  LS GQ++R+ALA   
Sbjct: 92  ALENLHFWQRFHGSGNA------ATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW 145

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
           L+   +   DEP T LD      +  L+   A +  IV+   HQP      +   + L A
Sbjct: 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTA 205

Query: 178 HG 179
             
Sbjct: 206 TK 207

Length = 209

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCP-------ISRTVMSRISGYVAQQD 50
              SGAGK+TLL    + + GL +   G I+LNG         I+     R  G V QQ 
Sbjct: 29  FGASGAGKSTLL----RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
            L   L V E+L F  K   +R     E   ++  +++ LG++H      + LSGG+++R
Sbjct: 85  ALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPT 163
           +ALA  L  +P++L  DEP + LD      ++  LKQ+     I VI   H  +
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 80.3 bits (199), Expect = 6e-18
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 31/214 (14%)

Query: 4   SGAGKTTLLAA---LNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDF-- 51
           SG+GK+TL  A   L      +  GE++L+G  +        R +  +    + Q     
Sbjct: 44  SGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTS 103

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-------RQVQISGLS 104
           L   +T+ + ++   +L            K    ++E +G+           Q     LS
Sbjct: 104 LNPVMTIGDQIREALRLHGKGSRAEAR--KRAVELLEQVGLPDPERRDRYPHQ-----LS 156

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPT 163
           GG R+R+ +A+ L  +P++L  DEPTT LD  +   +++LLK L  E  + +  I H   
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL- 215

Query: 164 SGVFEKF-DTVSLLAHGGLLAYHGQVSKVLKHFA 196
            GV  +  D V ++ + G +   G   ++L +  
Sbjct: 216 -GVVAELADRVVVM-YKGEIVETGPTEEILSNPQ 247

Length = 539

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 77.8 bits (192), Expect = 8e-18
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 20/189 (10%)

Query: 4   SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
           SG+GK+TLL  L     GL     GE+L NG  +S+   +  +       G++ Q   L+
Sbjct: 40  SGSGKSTLLHLLG----GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
            + T LE++  M  L   +     E  +    ++E +G+ HR   + S LSGG+R+R+A+
Sbjct: 96  PDFTALENVA-MPLLIGKKSVK--EAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
           A  L+ +P ++  DEPT  LD+ +A  + +L+ +L  E     +   H     + +K D 
Sbjct: 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL--ELAKKLDR 210

Query: 173 VSLLAHGGL 181
           V  +  G L
Sbjct: 211 VLEMKDGQL 219

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNG-CPISRTV--MSRISGYVAQQDFLIEEL 56
           P+GAGKTT L    K + GL+Q   GE+ + G  P  R    + RI     Q+  L  +L
Sbjct: 55  PNGAGKTTTL----KILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
            V++    +A +            K +  + E L +       +  LS GQR R  +A  
Sbjct: 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAA 167

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
           LL EP+ILF DEPT GLD  +  N+ N LK+   E    + 
Sbjct: 168 LLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 14/155 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
           P+GAGKTT        + GLV    G+ILL+   I++  M + +    GY+ Q+  +  +
Sbjct: 38  PNGAGKTTTFYM----IVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
           LTV +++  MA L +  +       K  +  ++E   I H R  +   LSGG+R+R+ +A
Sbjct: 94  LTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
             L   P+ +  DEP  G+D  +  ++  ++K L 
Sbjct: 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186

Length = 243

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-TVMSRISGYVAQQDFLIEEL 56
           + PSG+GK+TLL  +     GL Q   G I LNG   +R     R  G+V Q   L + L
Sbjct: 32  LGPSGSGKSTLLRII----AGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV +++ F  ++   R+    ++   +  ++E + +        + LSGGQR+R+ALA  
Sbjct: 88  TVRDNIAFGLEI---RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARA 144

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           L  EPQ+L  DEP   LD+     + + L++L  E  +    +        E  D + ++
Sbjct: 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204

Query: 177 AHG 179
           ++G
Sbjct: 205 SNG 207

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 21/141 (14%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC------PISRTVMSRISGYVAQQDFLI 53
           PSG GK+TLL    + + GL +   GEIL++G       P  R +       V Q   L 
Sbjct: 37  PSGCGKSTLL----RMIAGLEEPTSGEILIDGRDVTDLPPEKRGI-----AMVFQNYALY 87

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
             +TV E++ F  KL   R     E++K +  V + LG+ H    +   LSGGQR+R+AL
Sbjct: 88  PHMTVYENIAFGLKL---RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL 144

Query: 114 AVQLLTEPQILFCDEPTTGLD 134
           A  L+ +P++   DEP + LD
Sbjct: 145 ARALVRKPKVFLLDEPLSNLD 165

Length = 338

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 19/192 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLL    K + G+++   GEI+ +G P +R  + +I         LIE   + 
Sbjct: 34  PNGAGKSTLL----KMITGILRPTSGEIIFDGHPWTRKDLHKIGS-------LIESPPLY 82

Query: 60  EHLQFMAKLTMDRRTTWLELNK-TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           E+L   A+  +   TT L L    I  V+  + + +  + +    S G ++RL +A+ LL
Sbjct: 83  ENLT--ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
             P++L  DEPT GLD      +  L++    +   VI + H   S V +  D + ++  
Sbjct: 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-ILSEVQQLADHIGII-S 198

Query: 179 GGLLAYHGQVSK 190
            G+L Y G+++K
Sbjct: 199 EGVLGYQGKINK 210

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISG--YVAQQDFLIEELT 57
           P+G+GKTTLL  L     GL     G +LLNG P+     S   G  Y+     +   L+
Sbjct: 34  PNGSGKTTLLRIL----AGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           VLE+L+F      D         + +   +  +G+N      ++ LS GQ++R+ALA  L
Sbjct: 90  VLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL 140

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           L+   +   DEPTT LD          +        +V+   HQ 
Sbjct: 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 56/196 (28%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           P+GAGKTT    +   ++   +GEI  NG P+S+ + +RI GY+ ++  L  ++TV + L
Sbjct: 36  PNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRI-GYLPEERGLYPKMTVEDQL 93

Query: 63  QFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP 121
           +++A+L  M +     E+ K +   +E L I  ++  +I  LS G ++++     ++ EP
Sbjct: 94  KYLAELKGMPKA----EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149

Query: 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGL 181
           ++L  DEP +GLD  +   + + + +L  E   +I + H+    V E  D + +L   G 
Sbjct: 150 ELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR-MEHVEELCDRLLML-KKGQ 207

Query: 182 LAYHGQVSKVLKHFAK 197
              +G V  + + F K
Sbjct: 208 TVLYGTVEDIRRSFGK 223

Length = 300

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEELTV 58
           P+GAGKTTL   +    K    G ++  G  I+     RI+     + F    L   LTV
Sbjct: 38  PNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTV 96

Query: 59  LE------HLQFMAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSGGQRK 109
           LE      H +      + R     E  +   R  E L   G+          LS GQ++
Sbjct: 97  LENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
           RL +A  L T+P++L  DEP  GL+      +  L+++L     + I  I      V   
Sbjct: 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL 216

Query: 170 FDTVSLLAHGGLLA 183
            D + +L +G ++A
Sbjct: 217 ADRIVVLNYGEVIA 230

Length = 250

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEEL 56
           PSGAGK+TLL  +    +   +G+IL+NG  +SR     I       G V Q   L+ + 
Sbjct: 36  PSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94

Query: 57  TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           TV E++   +  +    R    E+ + ++ V++ +G+ H+ +   S LSGG+++R+A+A 
Sbjct: 95  TVYENVALPLRVIGKPPR----EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR 150

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            ++ +P +L  DEPT  LD   +  ++ L +++      V+ A H
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.0 bits (190), Expect = 6e-17
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 24/200 (12%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNG-------CPISRTVMSRISGYVAQQDFL 52
           PSG+GKT+L+      + GL    +G I LNG         I      R  GYV Q   L
Sbjct: 32  PSGSGKTSLINM----IAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
               TV  +L++    +M              +++  LGI H        LSGG+++R+A
Sbjct: 88  FPHYTVRGNLRYGMWKSM---------RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA 138

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
           +   LLT P++L  DEP   LD      ++  L++L  E  I I  +      V    D 
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198

Query: 173 VSLLAHGGLLAYHGQVSKVL 192
           V +L +G + A  G + +V 
Sbjct: 199 VVVLENGKVKAS-GPLEEVW 217

Length = 352

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 75.3 bits (185), Expect = 6e-17
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
           PSG GK+TLL  +   +     G +L  G  +S         ++S Y AQ   L  + TV
Sbjct: 37  PSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVS-YCAQTPALFGD-TV 93

Query: 59  LEHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAV 115
            ++L F  ++   R  R   L+L       +    +        I+ LSGG+++R+AL  
Sbjct: 94  EDNLIFPWQIRNRRPDRAAALDL-------LARFALPDSILTKNITELSGGEKQRIALIR 146

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQP 162
            L   P+IL  DE T+ LD  +  N+  ++ +   E  + +  I H  
Sbjct: 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194

Length = 223

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 76.0 bits (187), Expect = 8e-17
 Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVAQQ-DFLIEELT 57
           +GAGK+TL   LN  +K    G IL +G PI  SR  + ++    G V Q  D  +   +
Sbjct: 41  NGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V + + F A   ++ +    E+ K +   ++  GI H +      LS GQ+KR+A+A  L
Sbjct: 100 VYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLL 176
           + EP++L  DEPT GLD    + ++ LL ++  E  + +I A H          D V L 
Sbjct: 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--------IDIVPLY 208

Query: 177 AHGGLLAYHGQV 188
                +   G+V
Sbjct: 209 CDNVFVMKEGRV 220

Length = 283

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 77.3 bits (191), Expect = 8e-17
 Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 24/173 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
           PSGAGK+TLL  L     G V    G I +NG P+             +V Q  FL    
Sbjct: 356 PSGAGKSTLLNLL----LGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG- 410

Query: 57  TVLEHLQFMAKLTMD-------RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
           T+ E+++       D        R    E    + +     G++       +GLSGGQ +
Sbjct: 411 TIAENIRLARPDASDAEIREALERAGLDEFVAALPQ-----GLDTPIGEGGAGLSGGQAQ 465

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           RLALA   L +  +L  DEPT  LD+ +   V+  L+ LA + R V+   H+ 
Sbjct: 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRL 517

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR---TVMSRISGYVAQQDFLIEEL 56
            SG+GK+TLL    K + GL    QG ILL+G  ++      + R  GYV Q  FL    
Sbjct: 507 RSGSGKSTLL----KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG- 561

Query: 57  TVLEHL-QFMAKLTMDRRTTWLELNKTITRVMEN-LGINHRRQVQISGLSGGQRKRLALA 114
           ++ E++     + T +      +L      +    +G +       + LSGGQR+RLALA
Sbjct: 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             LL++P+IL  DE T+ LD  +   ++  L Q+  + R VI   H+ +       D + 
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLS--TIRSADRII 678

Query: 175 LLAHG 179
           +L  G
Sbjct: 679 VLDQG 683

Length = 709

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 44/236 (18%)

Query: 1   MSPSGAGKTTLLAAL-NKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           + P  +GKTTLL AL  K    L V GEI  NG  ++  V  + S Y++Q D  +  +TV
Sbjct: 197 LGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ------------------- 99
            E L F A+       T  +L   + R  ++ GI    +V                    
Sbjct: 257 KETLDFSARC--QGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDY 314

Query: 100 -------------------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN 140
                              I G+SGGQ+KR+     ++   + LF DE +TGLDS +   
Sbjct: 315 TLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 374

Query: 141 VVNLLKQLA-CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
           +V  L+Q+       V+ ++ QP    F+ FD + LL+ G ++ Y G    +L+ F
Sbjct: 375 IVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRDHILEFF 429

Length = 1470

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY-----VAQQDF-LIEEL 56
           PSGAGKTTLL  L   +    +G++ + G  ++R    ++        V  QDF L+ + 
Sbjct: 36  PSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E++    ++   +        + +   +  +G+ H+       LSGG+++R+A+A  
Sbjct: 95  TVYENVALPLEVRGKKEREI---QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           ++  P +L  DEPT  LD   +  +++LLK+L      VI A H
Sbjct: 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 23/193 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC-------PISRTVMSRISGYVAQQDFL 52
            SG+GKTTL+      + GL +   GEI+LNG         I      R  GYV Q+  L
Sbjct: 31  RSGSGKTTLIRL----IAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86

Query: 53  IEELTVLEHLQFMAKLTM--DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
              L+V  +L++  K     +RR ++        RV+E LGI H        LSGG+++R
Sbjct: 87  FPHLSVRGNLRYGMKRARPSERRISF-------ERVIELLGIGHLLGRLPGRLSGGEKQR 139

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
           +A+   LL+ P++L  DEP   LD      ++  L++L  E  I I  +      V    
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199

Query: 171 DTVSLLAHGGLLA 183
           D V +L  G + A
Sbjct: 200 DRVVVLEDGRVAA 212

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 3   PSGAGKTTLLAALNKRV-KGL---VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           P+G+GKTTLL     R+  GL     G I L+G  I    ++    Y+  ++ +   LTV
Sbjct: 36  PNGSGKTTLL-----RLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E+L+F A                I   +E +G+     +    LS GQ++R+ALA  L+
Sbjct: 91  AENLEFWAAFLGGEEL-------DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV 143

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
           +   I   DEPT  LD+ +      L++    +  IVI A H P 
Sbjct: 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188

Length = 207

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 1   MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
           + PSG GK+TLL  LN+    + G   +GE+LL+G  I    +  +      G V Q+  
Sbjct: 32  IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI-----NHRRQVQISGLSGG 106
                ++ +++ +  +L   +    L+      RV E L         + ++   GLSGG
Sbjct: 92  PFP-GSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKAALWDEVKDRLHALGLSGG 145

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           Q++RL LA  L  EP++L  DEPT+ LD  S   +  L+ +L  E  IVI
Sbjct: 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI 195

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 19/159 (11%)

Query: 3   PSGAGKTTL---LAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDF--LIEE 55
            SG+GK+TL   +  L K   G  +  G+ LL      R +  +    V Q     L   
Sbjct: 39  ESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98

Query: 56  LTVLEHLQ--FMAKLTMDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRK 109
           +T+ E +         + ++       + +  ++  +G+     +R   +   LSGGQR+
Sbjct: 99  MTIGEQIAEPLRIHGKLSKKE---ARKEAVLLLLVGVGLPEEVLNRYPHE---LSGGQRQ 152

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           R+A+A  L   P++L  DEPT+ LD      +++LLK+L
Sbjct: 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 47/177 (26%)

Query: 4   SGAGKTTLLAAL-------NKRVKGLVQGEILLNGCPI---SRTVMSRISG----YVAQQ 49
           SG+GK+ L  A+       N R+ G   GEIL +G  +   S   + +I G     + Q 
Sbjct: 40  SGSGKSVLAKAIMGLLPKPNARIVG---GEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96

Query: 50  -----------DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV 98
                         I E  +  H + ++K          E  +    ++E +GI    + 
Sbjct: 97  PMTSLNPVMTIGDQIAE-VLRLHGKGLSKK---------EAKERAIELLELVGIPDPERR 146

Query: 99  ------QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
                 +   LSGG R+R+ +A+ L   P++L  DEPTT LD      +++LLK+L 
Sbjct: 147 LKSYPHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200

Length = 316

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 72.6 bits (179), Expect = 5e-16
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--VMSRISGYVAQQDFLIEE 55
           + P+GAGKTT +    K + GL+    GEI  +G    +    + RI   +    F    
Sbjct: 32  LGPNGAGKTTTM----KIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGF-YPN 86

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           LT  E+L+ +A+L   R        K I  V++ +G+    + ++ G S G ++RL +A+
Sbjct: 87  LTARENLRLLARLLGIR-------KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIAL 139

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            LL  P +L  DEPT GLD      +  L+  L  +   V+ + H 
Sbjct: 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 72.5 bits (179), Expect = 6e-16
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 12/154 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           PSG GK+TLL  +     GL +   GE+L++G P++     R  GYV QQD L+  LTVL
Sbjct: 38  PSGCGKSTLLRII----AGLERPTSGEVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVL 91

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           +++    +L   +     E  +    ++E +G++         LSGG R+R+ALA  L  
Sbjct: 92  DNVALGLEL---QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV 148

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
           +P +L  DEP + LD+ +   +   L  +  E+ 
Sbjct: 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 72.6 bits (178), Expect = 7e-16
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 20/170 (11%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQ-----DFL 52
           + P+GAGKTTLL A    + GL+   +G + + G          I GYV Q+     DF 
Sbjct: 12  LGPNGAGKTTLLRA----ILGLIPPAKGTVKVAGAS-PGKGWRHI-GYVPQRHEFAWDFP 65

Query: 53  IE-ELTVLE-HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
           I    TV+      +  L       +  +   + RV    G+       +  LSGGQR+R
Sbjct: 66  ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV----GLTELADRPVGELSGGQRQR 121

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           + +A  L T P +L  DEP TGLD  +   +  L  +LA     ++   H
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 72.2 bits (178), Expect = 7e-16
 Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 34/180 (18%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
           +   G+GK+TLL  L     GL +   G +LL+G  I       +   I GYV Q   L 
Sbjct: 36  IGRVGSGKSTLLKLL----AGLYKPTSGSVLLDGTDIRQLDPADLRRNI-GYVPQDVTLF 90

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-----HRR--QVQIS----G 102
              T+ +++   A L  D R         I R  E  G+      H     +QI     G
Sbjct: 91  YG-TLRDNITLGAPLADDER---------ILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGGQR+ +ALA  LL +P IL  DEPT+ +D  S   +   L+QL  + + +I   H+P
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP 199

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 74.0 bits (182), Expect = 8e-16
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 9/138 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           PSG+GKTTLL    + + GL     G I  +G  +SR     R  G+V Q   L   +TV
Sbjct: 36  PSGSGKTTLL----RIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91

Query: 59  LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            +++ F +  L    R     +   +T+++E + + H      + LSGGQ++R+ALA  L
Sbjct: 92  FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151

Query: 118 LTEPQILFCDEPTTGLDS 135
             EPQIL  DEP   LD+
Sbjct: 152 AVEPQILLLDEPFGALDA 169

Length = 353

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-------TVMSRISGYVAQQDFL 52
           PSG+GK+TLLA L     GL     GE+ L G P+ +        + +R  G+V Q   L
Sbjct: 44  PSGSGKSTLLAVL----AGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
           I  LT LE++    +L  +      +       ++E +G+  R     + LSGG+++R+A
Sbjct: 100 IPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA 156

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           LA      P +LF DEPT  LD  + + + +LL  L  E
Sbjct: 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195

Length = 228

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           PSG GKTTLL    + + G  Q   GEILL+G  I+      R  G V Q   L   +TV
Sbjct: 39  PSGCGKTTLL----RMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E++ F   L + ++    E+   +   +E +G+      +   LSGGQ++R+ALA  L+
Sbjct: 95  EENVAF--GLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152

Query: 119 TEPQILFCDEPTTGLDS 135
            EP++L  DEP + LD+
Sbjct: 153 PEPKVLLLDEPLSALDA 169

Length = 352

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 23/145 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
           PSG+GKTTLL    + + GL +   G IL  G   +   V  R  G+V Q   L   +TV
Sbjct: 36  PSGSGKTTLL----RLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRKR 110
            +++ F   L +  R+      +   +V E L +     VQ+          LSGGQR+R
Sbjct: 92  FDNVAF--GLRVKPRSERPPEAEIRAKVHELLKL-----VQLDWLADRYPAQLSGGQRQR 144

Query: 111 LALAVQLLTEPQILFCDEPTTGLDS 135
           +ALA  L  EP++L  DEP   LD+
Sbjct: 145 VALARALAVEPKVLLLDEPFGALDA 169

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR----TVMSRISGYVAQQDFLIEE 55
            +GAGKTTLL  +     GLV+   G I+ +G  I+             YV +   +   
Sbjct: 37  RNGAGKTTLLKTI----MGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALA 114
           LTV E+L  +       +       + +  +   L     R+ Q +G LSGG+++ LA+A
Sbjct: 93  LTVEENLL-LGAYARRDKEAQERDLEEVYELFPRL---KERRNQRAGTLSGGEQQMLAIA 148

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L++ P++L  DEP+ GL       +   +K+L  E  + I  + Q      E  D   
Sbjct: 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208

Query: 175 LLAHG 179
           +L +G
Sbjct: 209 VLENG 213

Length = 237

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 71.7 bits (177), Expect = 1e-15
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
            +GAGKTTLL  +     GL+    G I  +G  I+       +    GYV +   +  E
Sbjct: 34  RNGAGKTTLLKTI----MGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALA 114
           LTV E+L   A      +         + RV E       R+ Q++G LSGG+++ LA+A
Sbjct: 90  LTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIA 144

Query: 115 VQLLTEPQILFCDEPTTGL 133
             L++ P++L  DEP+ GL
Sbjct: 145 RALMSRPKLLLLDEPSEGL 163

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM--SRISGYVAQQDFLIEELTV 58
           + P+GAGK+T +  +   +     G + + G  + +      R  GY+ + + L  ++ V
Sbjct: 34  LGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E+LQF+A +          L + +  ++E +G+   +  +I  LS G R+R+ LA  L+
Sbjct: 93  REYLQFIAGI---YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI 149

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            +P++L  DEPTTGLD      + N++K +  + + +I + H
Sbjct: 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTH 190

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
           P+GAGKTTLL A    + G +    G +L+ G  +   S    SR    V Q   L  E 
Sbjct: 37  PNGAGKTTLLRA----INGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
            V + ++        R  TW E ++  + R ME  G+       ++ LSGG+R+R+ LA 
Sbjct: 93  DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF-DTVS 174
            L     +L  DEPT  LD       + L+++L  + +  + AIH        ++ D + 
Sbjct: 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA--RYCDELV 210

Query: 175 LLAHGGLLA 183
           LLA G + A
Sbjct: 211 LLADGRVRA 219

Length = 402

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 71.6 bits (175), Expect = 2e-15
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 20/196 (10%)

Query: 1   MSPSGAGKTTLLAALNKRV-----KGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFL 52
           M PSG+GK+TLL  LN+ +     K  V G++L  G  I +    ++    G V QQ   
Sbjct: 42  MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101

Query: 53  IEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGG 106
              L++ +++ +  K     ++R    E+ K +   +  +G    +  R     S LSGG
Sbjct: 102 FPHLSIYDNIAYPLKSHGIKEKR----EIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
           Q++RL +A  L  +P++L  DEPT+ +D  ++  +  L+ +L  E  IVI + H P   V
Sbjct: 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS-HNPQQ-V 215

Query: 167 FEKFDTVSLLAHGGLL 182
               D V+ L +G L+
Sbjct: 216 ARVADYVAFLYNGELV 231

Length = 257

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 38/180 (21%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-----GYVAQQ-DF 51
           + P+GAGK+TL    N    G+++   GE+L+ G PI     S +      G V Q  D 
Sbjct: 34  LGPNGAGKSTLFLHFN----GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDD 89

Query: 52  LIEELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG------ 102
            +   TV E + F      L+ +      E+ K   RV E L     + V + G      
Sbjct: 90  QLFAPTVEEDVAFGPLNLGLSKE------EVEK---RVKEAL-----KAVGMEGFENKPP 135

Query: 103 --LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
             LSGGQ+KR+A+A  L  +P+I+  DEPT+GLD   A+ ++ LL  L  E   +I + H
Sbjct: 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195

Length = 275

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 14/166 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI-SRTVMSRIS-GYVAQQDFLIEE 55
           + P+GAGK+T+     + + G++   +G+I + G P+ SR  ++R++ G V Q D L  E
Sbjct: 36  LGPNGAGKSTI----ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91

Query: 56  LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
            TV E+L    +   M  R    E+   I  ++E   +  +  V+++ LSGG ++RL LA
Sbjct: 92  FTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA 147

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
             L+ +PQ+L  DEPTTGLD ++ + +   L+ L    + ++   H
Sbjct: 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
           + P+GAGK+T+     + + G+     G+I + G P+   +R   +RI G V Q D L  
Sbjct: 73  LGPNGAGKSTI----ARMILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDL 127

Query: 55  ELTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           E TV E+L    +   M  R    E+   I  ++E   +  +   ++S LSGG ++RL L
Sbjct: 128 EFTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL 183

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           A  L+ +PQ+L  DEPTTGLD ++ + +   L+ L    + ++   H
Sbjct: 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 70.8 bits (173), Expect = 5e-15
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-----SRTVMSRISGYVAQQD 50
           + PSG GKTT L A+N R+  L     V G ILL+G  I         M R  G V Q+ 
Sbjct: 36  IGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94

Query: 51  FLIEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLG-INHRRQVQISGLSGGQR 108
                ++V +++    KL  +  R   +E+ +   R       +  R +   +GLSGGQ+
Sbjct: 95  NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA--IHQPTSGV 166
           +RL +A  L  EP+IL  DEPT+ LD  S   + +L+  L   + I+I    +HQ     
Sbjct: 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAA--- 211

Query: 167 FEKFDTVSLLAHGGLLAYHGQVSKVL 192
               DT S    G L+  HG   ++ 
Sbjct: 212 -RVSDTTSFFLVGDLVE-HGPTDQLF 235

Length = 252

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 70.7 bits (173), Expect = 7e-15
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-------FLIEEL 56
           +G+GK+TL  AL   V+ L  G+I + G P  + +   +  YV Q +        L+E++
Sbjct: 42  NGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
            ++     M  L   RR    +  + +T  +  + +   R  QI  LSGGQ+KR+ LA  
Sbjct: 101 VMMGRYGHMGWL---RRAKKRD-RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           +  + Q++  DEP TG+D  +   +++LL++L  E + ++ + H    G   +F   +++
Sbjct: 157 IAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN--LGSVTEFCDYTVM 214

Query: 177 AHGGLLA 183
             G +LA
Sbjct: 215 VKGTVLA 221

Length = 272

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 71.1 bits (174), Expect = 9e-15
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELT 57
           SGAGK+TL+  +N  ++    G ++++G  ++       T   R  G + Q   L+   T
Sbjct: 40  SGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V  ++    +L     T   E+ + +T ++  +G+  +     S LSGGQ++R+A+A  L
Sbjct: 99  VFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
            + P++L CDE T+ LD  +  +++ LLK++     + I  I      V    D V++++
Sbjct: 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215

Query: 178 HGGLLAYHGQVSKVLKH 194
             G L   G VS++  H
Sbjct: 216 -NGELIEQGTVSEIFSH 231

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 54/147 (36%), Positives = 71/147 (48%), Gaps = 28/147 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQDFLIEE 55
           PSGAGK+TLL    + + GL     G I LNG  +       V  R  G+V Q   L   
Sbjct: 36  PSGAGKSTLL----RIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQ 107
           +TV +++ F  K+  +R        +   RV E L     R VQ+ G        LSGGQ
Sbjct: 92  MTVADNIAFGLKVRKER----PSEAEIRARVEELL-----RLVQLEGLADRYPAQLSGGQ 142

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLD 134
           R+R+ALA  L  EP++L  DEP   LD
Sbjct: 143 RQRVALARALAVEPKVLLLDEPFGALD 169

Length = 345

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 35/164 (21%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISR----TVMSRISGYVAQQD----- 50
            SG+GK+TL   L     GL     G ILL+G P++         R    V  QD     
Sbjct: 41  ESGSGKSTLARLL----AGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMV-FQDPYSSL 95

Query: 51  --FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLS 104
                    + E L+        +R         I  +++ +G+      RR  +   LS
Sbjct: 96  NPRRTVGRILSEPLRPHGLSKSQQR---------IAELLDQVGLPPSFLDRRPHE---LS 143

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           GGQR+R+A+A  L+ EP++L  DEPT+ LD      ++NLL +L
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187

Length = 252

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLV------QGEILLNGCP---ISRTVMSRISGYVAQQDFLI 53
            SG+GK+TL        K LV       GEILLNG     I R  + +   Y+ Q+ ++ 
Sbjct: 508 MSGSGKSTL-------AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560

Query: 54  EELTVLEHLQFMAK--LTMDRRTTWLELNKTITRVMEN--LGINHRRQVQISGLSGGQRK 109
              ++LE+L   AK  ++ D      E+ + I   +EN  LG       + S +SGGQ++
Sbjct: 561 SG-SILENLLLGAKENVSQDEIWAACEIAE-IKDDIENMPLGYQTELSEEGSSISGGQKQ 618

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
           R+ALA  LLT+ ++L  DE T+ LD+ +   +VN L  L  + + +I   H+ +  V ++
Sbjct: 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQ 674

Query: 170 FDTVSLLAHGGLL 182
            D + +L HG ++
Sbjct: 675 SDKIIVLDHGKII 687

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMS-----RISGYVAQQDFL-I 53
           M P+G+GK+TL   +    K  V +GEIL +G  I    +S     R   ++A Q  + I
Sbjct: 36  MGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI--LELSPDERARAGIFLAFQYPVEI 93

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKR 110
             +T  + L+         R    E  K +    E LG++     R V   G SGG++KR
Sbjct: 94  PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-GFSGGEKKR 152

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
             +   LL EP++   DEP +GLD  +   V   +  L  E R V+   H      + K 
Sbjct: 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212

Query: 171 DTVSLLAHG 179
           D V +L  G
Sbjct: 213 DKVHVLYDG 221

Length = 251

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 19/169 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFLIEELTVL 59
           P+G GK+TLL    + +     G + L   PIS     +++  +A   Q     E +TV 
Sbjct: 36  PNGCGKSTLLKCFARLLTPQ-SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94

Query: 60  E--------HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           E         L    +L+ +           + + ME   INH    +++ LSGGQR+R 
Sbjct: 95  ELVAYGRSPWLSLWGRLSAEDN-------ARVNQAMEQTRINHLADRRLTDLSGGQRQRA 147

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            LA+ L  +  ++  DEPTT LD      ++ L+++L  + + V+  +H
Sbjct: 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLH 196

Length = 255

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 13/197 (6%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA----QQDFLIEEL 56
           + P+GAGK+TL    N  +K    G +L+ G PI++  +  +  +V       D  I   
Sbjct: 36  IGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94

Query: 57  TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           TV + + F    L +D  T    +   ++  +  LG+   R      LSGG++KR+A+A 
Sbjct: 95  TVEQDIAFGPINLGLDEET----VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG 150

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVS 174
            +  EPQ+L  DEPT GLD      +++ L  L       VI + HQ    V E  D + 
Sbjct: 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-LDLVPEMADYIY 209

Query: 175 LLAHGGLLAYHGQVSKV 191
           ++  G ++AY G V ++
Sbjct: 210 VMDKGRIVAY-GTVEEI 225

Length = 277

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 23/179 (12%)

Query: 1   MSPSGAGKTTLLAALNKRVK----GLVQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
           M PSG GK+TLL   N+ ++      V+GE+ L G  I    +  I      G V Q   
Sbjct: 36  MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95

Query: 52  LIEELTVLEHLQFMAKLT--------MDRRTTWLELNKTITRVMENLGINHRRQVQISGL 103
               LT+ +++    KL         +D R  W      +   +++     R     S L
Sbjct: 96  PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNL 150

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           SGGQR+RL +A  L  +P+IL  DEPT  +D      +  LL +L  E  IV+   H P
Sbjct: 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT-HSP 208

Length = 253

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
           PSG+GK+TLLA L   +  L QGE+ L+G P+    +  + R     AQ   L +  TV 
Sbjct: 369 PSGSGKSTLLATLAGLLDPL-QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVR 426

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRV-MENL------GINHRRQVQISGLSGGQRKRLA 112
           E+L+       D      EL   + RV + +       G++       + LSGG+R+RLA
Sbjct: 427 ENLRLARPDATDE-----ELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLA 481

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LA  LL +  IL  DEPT  LD+ +A+ ++  L   A   R V+   H  
Sbjct: 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 44/179 (24%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLE 60
            SG+GK+TLL  L   +K   QGEI L+G P+S     +S +   + Q+ +L +      
Sbjct: 36  RSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD------ 88

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
                                  T +  NLG   RR       SGG+R+RLALA  LL +
Sbjct: 89  -----------------------TTLRNNLG---RR------FSGGERQRLALARILLQD 116

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
             I+  DEPT GLD  +   +++L+ ++  + + +I   H  T    E  D +  L +G
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG--IEHMDKILFLENG 172

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 24/173 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQ-----DFLIE 54
           P+GAGK+TLL AL+  +     GE+ LNG P+   S   ++R    + Q       F +E
Sbjct: 36  PNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
           E  V+     M +       +  E +  +   +  + + H        LSGG+++R+ LA
Sbjct: 95  E--VVA----MGR--APHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA 146

Query: 115 ---VQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
               QL      P+ L  DEPT+ LD    ++V+ L +QLA E  + VI  +H
Sbjct: 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH 199

Length = 258

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
           PSG+GKTT L  +N+ ++    GEIL++G  IS      +  +I GYV QQ  L   LTV
Sbjct: 35  PSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKI-GYVIQQIGLFPHLTV 92

Query: 59  LEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHR--RQVQISGLSGGQRKRLALAV 115
            E++  + KL   D+      + K    +++ +G++           LSGGQ++R+ +A 
Sbjct: 93  AENIATVPKLLGWDKE----RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
            L  +P IL  DEP   LD  +   +   +K+L
Sbjct: 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181

Length = 309

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.9 bits (166), Expect = 5e-14
 Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           PSG GKTTLL  +   V    +G I LNG  I      R  G V Q + L+  L V++++
Sbjct: 39  PSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER--GVVFQNEALLPWLNVIDNV 95

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
            F  +L    +    E+     +++  +G+       I  LSGG R+R+ +A  L  EPQ
Sbjct: 96  AFGLQLRGIEKAQRREI---AHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152

Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACES 152
           +L  DEP   LD+ +   +  LL  L  E+
Sbjct: 153 LLLLDEPFGALDALTREQMQELLLDLWQET 182

Length = 259

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 17/155 (10%)

Query: 4   SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR-------TVMSRISGYVAQQDFLI 53
           SG+GK+TLL  L     GL     G+++ NG P+S+        + ++  G++ Q   L+
Sbjct: 44  SGSGKSTLLHLLG----GLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
            + T LE++  M  L   ++    E+N     ++  +G+ HR   + S LSGG+R+R+A+
Sbjct: 100 PDFTALENVA-MPLLIGKKKPA--EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           A  L+  P+++  DEPT  LD+ +A+++  LL +L
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191

Length = 233

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI--SR---TVMSRISGYVAQQ-DF 51
           +  +GAGK+TLL  LN    GL++   G +L++G P+  SR       +  G V Q  D 
Sbjct: 24  LGANGAGKSTLLLHLN----GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
            +    V + + F   L +       E+ + +   +  +G +  R+     LSGG++KR+
Sbjct: 80  QLFAADVDQDVAF-GPLNLGLSEA--EVERRVREALTAVGASGLRERPTHCLSGGEKKRV 136

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           A+A  +   P +L  DEPT GLD      ++ +L++L  E   V+ + H
Sbjct: 137 AIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SRTVMSRI----SGYVAQQDFLIEELT 57
           PSG+GK+TLL  +NK ++ +  G+++++G  +    V  R+    +G V QQ +L   LT
Sbjct: 35  PSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            LE++ F       R  +  E  K    ++  +G+  R     S LSGGQ++R+A+A  L
Sbjct: 94  ALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
             +P+++  DEPT+ LD    + V+ +++ LA E   ++   H+
Sbjct: 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195

Length = 240

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLL AL+  +     GE+ LNG P++      ++R    + Q   L    TV 
Sbjct: 35  PNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA---VQ 116
           E +Q M ++         E  +   + +    ++         LSGG+++R+ LA    Q
Sbjct: 94  EVVQ-MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152

Query: 117 L---LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           L   +   + LF DEPT+ LD    ++ + L +QLA E   V+  +H
Sbjct: 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLH 199

Length = 259

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 11/152 (7%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEEL 56
           SG+GK+TLLA L     G   GE+ L G P+ +        + ++  G+V Q   LI  L
Sbjct: 45  SGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
             LE+++  A L   R  +  +       ++E LG+  R     + LSGG+++R+ALA  
Sbjct: 104 NALENVELPALL---RGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
               P +LF DEPT  LD  + + + +LL  L
Sbjct: 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192

Length = 228

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 15/140 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
           PSG+GKTT +  +N+ ++    GEI ++G  I       + R  GYV QQ  L   +TV 
Sbjct: 35  PSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVME-----NLGINHRRQVQISGLSGGQRKRLALA 114
           E++  + KL       W +  K   R  E      L            LSGGQ++R+ +A
Sbjct: 94  ENIALVPKLL-----KWPK-EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147

Query: 115 VQLLTEPQILFCDEPTTGLD 134
             L  +P +L  DEP   LD
Sbjct: 148 RALAADPPLLLMDEPFGALD 167

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL-- 62
           GAGK+TLL  L   ++    GE+        + +  R+ GY++Q+  L  E TVL+++  
Sbjct: 39  GAGKSTLLKILAGELEP-DSGEV-----TRPKGL--RV-GYLSQEPPLDPEKTVLDYVIE 89

Query: 63  -------------QFMAKLTMDRRTTWLELNKT------------ITRVMENLGINHRRQ 97
                        +  A L         EL                   +  LG     +
Sbjct: 90  GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149

Query: 98  VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
             +S LSGG R+R+ALA  LL EP +L  DEPT  LD
Sbjct: 150 -PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185

Length = 530

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-QDFLIEELTVLEH 61
           P+GAGK+TLL  L   +  L  G +      +  TV     GY  Q +D L  + TVLE 
Sbjct: 356 PNGAGKSTLLKLLAGELGPL-SGTVK-----VGETVKI---GYFDQHRDELDPDKTVLEE 406

Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLALAVQLLTE 120
           L        +      E  + +   +   G     Q + +  LSGG++ RL LA  LL  
Sbjct: 407 L-------SEGFPDGDE--QEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457

Query: 121 PQILFCDEPTTGLD 134
           P +L  DEPT  LD
Sbjct: 458 PNLLLLDEPTNHLD 471

Length = 530

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 13/161 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
           PSGAGK+TL+  +N R+    +G IL++G  I       + R  G V QQ  L E  TV 
Sbjct: 37  PSGAGKSTLIKLIN-RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVK 94

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLL 118
           +++++   L  ++       N  +   +  +G+N       +  LSGG+ +R+++A  L 
Sbjct: 95  DNIEYGPMLKGEK-------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
             P++L  DEPT+ LD  S   +  L+ +L  +  + +  I
Sbjct: 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188

Length = 241

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 19/206 (9%)

Query: 1   MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISR-----TVMSRISGYVAQQDF 51
           + PSG GKTTLL ++N+    + G  V+G+I   G  I       T   +  G V Q+  
Sbjct: 35  IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQ 107
               +++ +++ F  ++   +     +L++ +   ++       +        + LSGGQ
Sbjct: 95  PFP-MSIYDNVAFGPRIHGVKSKH--KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVF 167
           ++RL +A  L  EP+++  DEPT+ LD  +   +  LL++L+    IVI  +        
Sbjct: 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI--VTHNIGQAI 209

Query: 168 EKFDTVSLLAHGGLLAYHGQVSKVLK 193
              D ++ +  G L+ Y G   ++++
Sbjct: 210 RIADYIAFMYRGELIEY-GPTREIVE 234

Length = 250

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
           + P+GAGKTT L    + + GL     G I L G P+   +R    R+ G V Q D L  
Sbjct: 39  LGPNGAGKTTTL----RMLLGLTHPDAGSISLCGEPVPSRARHARQRV-GVVPQFDNLDP 93

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
           + TV E+L    +       +       +  ++E   + ++   ++  LSGG ++RL LA
Sbjct: 94  DFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
             L+ +P +L  DEPTTGLD  + + +   L+ L    + ++   H
Sbjct: 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196

Length = 306

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRIS---GYVA---QQDFLIEELT 57
           GAG+T L  AL    +    GEILL+G P+  R+    I     YV    + + L+ +++
Sbjct: 295 GAGRTELARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353

Query: 58  VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGIN-HRRQVQISGLSGGQRKRL 111
           + E    +   ++ R +    ++         R +  L I     +  I  LSGG ++++
Sbjct: 354 IAE---NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
            LA  L T+P++L  DEPT G+D  +   +  L+++LA E + ++
Sbjct: 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455

Length = 500

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           PSG GKTTLL    + + G      GEILL+G  I+      R    V Q   L   LTV
Sbjct: 34  PSGCGKTTLL----RLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E++ F  +L   ++    E+ + +   ++ + +      + S LSGGQ++R+A+A  L+
Sbjct: 90  FENIAFGLRL---KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV 146

Query: 119 TEPQILFCDEPTTGLD 134
            EP++L  DEP   LD
Sbjct: 147 NEPKVLLLDEPLGALD 162

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 17/157 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS-------GYVAQQDFL 52
            SG+GK+TL   L     GL+    G I+ +G  +  T              +      L
Sbjct: 325 ESGSGKSTLARIL----AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRL 111
              +TV + L     L +    +  E    +  ++E +G+           LSGGQR+R+
Sbjct: 381 NPRMTVGDILAE--PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV 438

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           A+A  L  EP++L  DEP + LD      V+NLLK L
Sbjct: 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475

Length = 539

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 66.6 bits (162), Expect = 4e-13
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 23/205 (11%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ-----GEILLNGCPISRTV-MSRISGYVAQQDFLIE 54
           +  SG GKTTLL A    + G V+     G I +    ++      R    + Q   L  
Sbjct: 37  IGKSGCGKTTLLRA----IAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN---HRRQVQISGLSGGQRKRL 111
            L V +++ F  +    ++    ++ + +   ++ +G+         Q   LSGG ++R+
Sbjct: 93  HLKVEDNVAFGLRA---QKMPKADIAERVADALKLVGLGDAAAHLPAQ---LSGGMQQRI 146

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQPTSGVFEK 169
           A+A  +  EP +L  DEP + LD+    N+   +  L  E     ++C  H     +   
Sbjct: 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA 206

Query: 170 FDTVSLLAHGGLLAYHGQVSKVLKH 194
            D   ++  G L A HG+   +   
Sbjct: 207 -DKAGIMKDGRLAA-HGEPQALYDA 229

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 19/202 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLE 60
            SG+GK+TLL  L        QG I LNG  I+       R +  V  Q   +   T+ +
Sbjct: 372 RSGSGKSTLLQLL-AGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430

Query: 61  HLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQL 117
           +L+  A         W  L +  + +++E+        +   G  LSGG+R+RLALA  L
Sbjct: 431 NLRL-ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL- 176
           L +  +   DEPT GLD  +   V+ LL + A E + ++   H+      E+ D + +L 
Sbjct: 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDRIIVLD 546

Query: 177 --------AHGGLLAYHGQVSK 190
                    H  LLA +G+  +
Sbjct: 547 NGKIIEEGTHAELLANNGRYKR 568

Length = 573

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGC-PISRTVMSRIS----GYVAQQDFLIEELT 57
           P+GAGKTTL+  +  + +   +GE+L +G   +++    RI+    G   Q+  + E LT
Sbjct: 39  PNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT 97

Query: 58  VLEHLQFMAKLTMDRRTTWL---------ELNKTITRVMENLGINHRRQVQISGLSGGQR 108
           V E+L+    L ++R  +           E  + I  ++  +G+   R    + LS GQ+
Sbjct: 98  VRENLE----LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
           + L + + L  +P++L  DEP  G+          LLK LA     ++   H    G   
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHD--MGFVR 210

Query: 169 KF-DTVSLLAHGGLLA 183
           +  D V++L  G +LA
Sbjct: 211 EIADKVTVLHEGSVLA 226

Length = 249

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 3   PSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           PSG GKTT L   A L +   G +  G   +   P       R    V Q   L   +TV
Sbjct: 34  PSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD----RDIAMVFQNYALYPHMTV 89

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            +++ F  KL   R+    E+++ +  V E L I H    +   LSGGQR+R+AL   ++
Sbjct: 90  YDNIAFGLKL---RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV 146

Query: 119 TEPQILFCDEPTTGLD 134
            EP++   DEP + LD
Sbjct: 147 REPKVFLMDEPLSNLD 162

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 64.4 bits (158), Expect = 5e-13
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRISGYVAQQDFLIEELT 57
           P+GAGKT+LL  L     GL +   GE+L  G PI   R    +   Y+  Q  +  ELT
Sbjct: 35  PNGAGKTSLLRIL----AGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90

Query: 58  VLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
            LE+L+F  +L    D    W  L +        +G+     V +  LS GQ++R+ALA 
Sbjct: 91  ALENLRFYQRLHGPGDDEALWEALAQ--------VGLAGFEDVPVRQLSAGQQRRVALAR 142

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
             LT   +   DEP T +D      +  LL Q A +  +VI   HQ 
Sbjct: 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189

Length = 204

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 64.6 bits (157), Expect = 8e-13
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SRTVMSRISGYVAQQ-----DF 51
           + P+G GK+TLL  L+ R+     G + L+G  I    S+ V  RI G +AQ      D 
Sbjct: 39  IGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASKEVARRI-GLLAQNATTPGDI 96

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
            ++EL            T  R+    E  + +T+ M+  GI H     +  LSGGQR+R 
Sbjct: 97  TVQELVARGRYPHQPLFTRWRK----EDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA 152

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
            +A+ L  E  I+  DEPTT LD     +++ LL +L  E    + A+
Sbjct: 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200

Length = 265

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 24/204 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISR---TVMSRISGYVAQQDFLIEELT 57
           P+GAGK+TLLA +     GL+   G I   G P+       ++R   Y++QQ      + 
Sbjct: 30  PNGAGKSTLLARM----AGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMP 85

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG--QRKRLALAV 115
           V ++L     L    +T    +   +  V E LG++ +    ++ LSGG  QR RLA AV
Sbjct: 86  VFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA-AV 140

Query: 116 QLLTEPQI------LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
            L   P I      L  DEP   LD      +  LL +L  +   V+ + H   +     
Sbjct: 141 VLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD-LNHTLRH 199

Query: 170 FDTVSLLAHGGLLAYHGQVSKVLK 193
            D V LL  G LLA  G+  +VL 
Sbjct: 200 ADRVWLLKQGKLLAS-GRRDEVLT 222

Length = 248

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 57/187 (30%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEEL 56
           PSG+GK+TL     + + GL     G + L+G  IS+   + +    GY+ Q D L    
Sbjct: 36  PSGSGKSTLA----RLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL---- 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
                                  + +I    EN+            LSGGQR+RL LA  
Sbjct: 88  ----------------------FSGSI---AENI------------LSGGQRQRLGLARA 110

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL--ACESRIVICAIHQPTSGVFEKFDTVS 174
           L   P+IL  DEP + LD      +   +  L  A  +RIVI   H+P        D + 
Sbjct: 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA--HRPE--TLASADRIL 166

Query: 175 LLAHGGL 181
           +L  G +
Sbjct: 167 VLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
           M  SG+GK+T +  LN+ ++    G+I ++G  I        R V  +  G V QQ  L 
Sbjct: 25  MGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83

Query: 54  EELTVLEHLQFMAKL----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
             +T+L++     +L      +R+   LEL K +   +E     HR   +   LSGG ++
Sbjct: 84  PHMTILQNTSLGPELLGWPEQERKEKALELLKLVG--LEEYE--HRYPDE---LSGGMQQ 136

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           R+ LA  L  EP IL  DE  + LD    +++ + LK+L
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 24/173 (13%)

Query: 1   MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPI-----SRTVMSRISGYVAQQ-- 49
           + PSG GK+TLL +LN+    V G+ ++G++L +G  I         + R  G V Q+  
Sbjct: 33  IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92

Query: 50  DFLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGL 103
            F    +++ +++ +  +L    D++    EL++ +   ++   +      R      GL
Sbjct: 93  PFP---MSIYDNIAYGPRLHGIKDKK----ELDEIVEESLKKAALWDEVKDRLHDSALGL 145

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           SGGQ++RL +A  L  EP++L  DEPT+ LD  +   +  L+++L  +  IVI
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVI 198

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 14/183 (7%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
           + PSG GKTTLL      + G V    G I L+G P+      R  G V Q + L+    
Sbjct: 33  LGPSGCGKTTLL----NLIAGFVPYQHGSITLDGKPVEGPGAER--GVVFQNEGLLPWRN 86

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V +++ F  +L    +   LE+   + + +   G   R   Q   LSGGQR+R+ +A  L
Sbjct: 87  VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ---LSGGQRQRVGIARAL 143

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSLL 176
              PQ+L  DEP   LD+++   +  LL +L  E+ + V+   H     VF   + V LL
Sbjct: 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV-LL 202

Query: 177 AHG 179
           + G
Sbjct: 203 SPG 205

Length = 255

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMS---RISGYVAQQDFLIEELT 57
           PSGAGKT+LL AL     G +  QG + +NG  +         +   +V Q   L    T
Sbjct: 384 PSGAGKTSLLNAL----LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-T 438

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALA 114
           + +++  +             L    ++  +  L  G++     Q +GLS GQ +RLALA
Sbjct: 439 LRDNV-LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
             LL   Q+L  DEPT  LD++S   V+  L   +
Sbjct: 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532

Length = 588

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 20/162 (12%)

Query: 1   MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFL 52
           + PSGAGK++LL  LN   +       I  N    S+T        + R  G V QQ  L
Sbjct: 34  LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQ 107
              LTV E+L     +    R   L  ++ + R  + L     R    +      LSGGQ
Sbjct: 94  WPHLTVQENL-----IEAPCRVLGLSKDQALARAEKLL--KRLRLKPYADRYPLHLSGGQ 146

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           ++R+A+A  L+ EPQ+L  DEPT  LD      +V+++K+LA
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188

Length = 242

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 19/142 (13%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVAQQDFLIEEL 56
           + PSG GKTTLL  L     G  Q   G I+L+G  ++      R    V Q   L   +
Sbjct: 2   LGPSGCGKTTLLRLL----AGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTIT-RVMENLGINH---RRQVQISGLSGGQRKRLA 112
           TV E++ F   L M +          I  RV+E L +         +   LSGGQ++R+A
Sbjct: 58  TVEENVAF--GLKMRK-----VPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVA 110

Query: 113 LAVQLLTEPQILFCDEPTTGLD 134
           LA  L+ +P+IL  DEP + LD
Sbjct: 111 LARALVFKPKILLLDEPLSALD 132

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 63.1 bits (153), Expect = 3e-12
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 16/177 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT-------VMSRI-SGYVAQQD 50
           + PSG+GK+TLL  L+  + G       I L G  + R          SR  +GY+ QQ 
Sbjct: 36  LGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95

Query: 51  FLIEELTVLEHLQFMA-KLTMDRRT--TWL--ELNKTITRVMENLGINHRRQVQISGLSG 105
            L+  L+VLE++   A   T   RT  +W   E  +   + +  +G+ H    ++S LSG
Sbjct: 96  NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
           GQ++R+A+A  L+ + +++  DEP   LD  SA  V++ L+ +     I V+  +HQ
Sbjct: 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212

Length = 262

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 20/156 (12%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISG-YVAQQDF-LIEELT 57
           GAGK+TL+  L+    G+     GEIL++G     S    +  +G     Q+  L+  L+
Sbjct: 44  GAGKSTLMKILS----GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99

Query: 58  VLE-----HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
           V E              +DR+     + +    ++  LG++      +  LS  QR+ + 
Sbjct: 100 VAENIFLGREPTRRFGLIDRK----AMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           +A  L  + ++L  DEPT  L       + +L+++L
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191

Length = 500

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 1   MSPSGAGKTTLLAALNKRV----KGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLI 53
           M PSG+GK+TLL   N+ +    +  V GE+ L+G  I +     + R    V Q    I
Sbjct: 35  MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRK 109
             L++ E++    KL    ++   EL + +   +E       +  R       LSGGQ++
Sbjct: 95  PNLSIFENVALGLKLNRLVKSK-KELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           RL +A  L  +P++L  DEPT  LD  +   + +L  +L  +  IV+
Sbjct: 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVL 200

Length = 250

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL-----TV 58
           SG+GK+T L  +N  ++    G I +NG  I R    +           ++ L      V
Sbjct: 41  SGSGKSTFLRCIN-FLEKPSAGSIRVNGEEI-RLKRDKDGQLKPADKRQLQRLRTRLGMV 98

Query: 59  LEHLQFMAKLT-----MDRRTTWLELNK--TITRVMENL---GINHRRQVQISGLSGGQR 108
            +H    + +T     ++     L ++K   I R  + L   GI  +     + LSGGQ+
Sbjct: 99  FQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +R+A+A  L  EP+++  DEPT+ LD      V+ +++ LA E R ++   H+
Sbjct: 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211

Length = 256

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 13/161 (8%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLI---EELTVL 59
           GAGK+TLL A+   +K    G+IL++G  +++  +++ +  +A+  QD L     ELT+ 
Sbjct: 42  GAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIE 100

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVME------NLGINHRRQVQISGLSGGQRKRLAL 113
           E+L  +A+    +R     LN+              LG+ +R   +I  LSGGQR+ L+L
Sbjct: 101 ENL-ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
            +  L  P+IL  DE T  LD  +A  V+ L  ++  E ++
Sbjct: 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200

Length = 263

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS-RISGYVAQQDFLIEEL 56
           M PSGAGK+TLL      + G      G I +N    +      R    + Q++ L   L
Sbjct: 30  MGPSGAGKSTLLNL----IAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV +++       +  +    +  K +    + +GI          LSGGQR+R+ALA  
Sbjct: 86  TVRQNIGLGLHPGL--KLNAEQQEK-VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPT 163
           L+    IL  DEP + LD      ++ L+KQL  E  R ++   H  +
Sbjct: 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 1   MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
           M PSG GK+TLL+ +   + G     GE+ LN   +       R  G + Q   L   L+
Sbjct: 34  MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V ++L F    T+         N  + R   + G  H+       LSGGQR R+AL   L
Sbjct: 94  VGQNLLFALPATLKGNARRNAANAALERSGLD-GAFHQDPAT---LSGGQRARVALLRAL 149

Query: 118 LTEPQILFCDEPTTGLD 134
           L +P+ L  DEP + LD
Sbjct: 150 LAQPKALLLDEPFSRLD 166

Length = 213

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 3   PSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
           PSG GK+TLL   A L     G L  GE  +N  P +     R  G V Q   L   L+V
Sbjct: 37  PSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLSV 92

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E++ F  KL   ++    E+N+ + +V E L + H    +   LSGGQR+R+A+   L+
Sbjct: 93  AENMSFGLKLAGAKKE---EINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149

Query: 119 TEPQILFCDEPTTGLDS 135
            EP +   DEP + LD+
Sbjct: 150 AEPSVFLLDEPLSNLDA 166

Length = 369

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 24/171 (14%)

Query: 3   PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-SRTV----MSRISGYVAQQDFL 52
           PSG GK+T L  LN R+  L     V+GEILL+G  I    V    + R  G V Q+   
Sbjct: 40  PSGCGKSTFLRCLN-RMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL-------GINHRRQVQISGLSG 105
             + ++ E++ +  ++   +   +L       RV  +L        +  R      GLSG
Sbjct: 99  FPK-SIFENVAYGLRVNGVKDKAYLA-----ERVERSLRHAALWDEVKDRLHESALGLSG 152

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GQ++RL +A  L  EP++L  DEP + LD  +   +  L+ +L     I+I
Sbjct: 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203

Length = 253

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNG-CPISR--TVMSRISGYVAQQDFLIEELTVL 59
            +GAGK+T L  L   +     G++ +NG  P  R    +  I   + Q+  L  +L  L
Sbjct: 58  ANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           + L+ +  +         E  + +  + E L +    +  +  LS GQR R  LA  LL 
Sbjct: 117 DSLEVLKLI---YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH 173

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
            P++LF DEPT GLD  +  N+   LK+   E +  +         +    D V LL   
Sbjct: 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV-LLIDQ 232

Query: 180 GLLAYHGQVSKVLKHFAK 197
           G L + G ++++ + F  
Sbjct: 233 GQLVFDGTLAQLQEQFGP 250

Length = 325

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 23/173 (13%)

Query: 4   SGAGKTTL---LAALNK------RVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIE 54
           SG+GK+TL   L  L+K      RV G  Q    L+   +++       G++ Q+  L+ 
Sbjct: 43  SGSGKSTLMNILGCLDKPTSGTYRVAG--QDVATLDADALAQLRREHF-GFIFQRYHLLS 99

Query: 55  ELTVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
            LT  ++++  A         R     EL   + R    LG+  R + Q S LSGGQ++R
Sbjct: 100 HLTAAQNVEVPAVYAGLERKQRLLRAQEL---LQR----LGLEDRVEYQPSQLSGGQQQR 152

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
           +++A  L+   Q++  DEPT  LDS+S   V+ +L QL      VI   H P 
Sbjct: 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205

Length = 648

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTV 58
           P+GAGKTT++  +  + +   +G +L  G  ++     +I+    G   Q+  + E LTV
Sbjct: 36  PNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94

Query: 59  LEHLQFMAK-------LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
            E+L+               R +   E    I  V+E +G+          LS GQ++ L
Sbjct: 95  FENLELALPRDKSVFASLFFRLSA--EEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI 156
            + + L+ +P++L  DEP  G+          LLK LA + S +V+
Sbjct: 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVV 198

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 26/172 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD-- 50
           PSG GK+T L  LN R+  L+     +GE+LL+G  I ++ +         G V QQ   
Sbjct: 37  PSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95

Query: 51  FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLS 104
           F    +++ +++ +  +     D++    +L++ + + ++   +      R +    GLS
Sbjct: 96  F---PMSIYDNVAYGPRTHGIKDKK----KLDEIVEKSLKGAALWDEVKDRLKKSALGLS 148

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  L  EP++L  DEPT+ LD  S   +  L+++L  +  IVI
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVI 200

Length = 250

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
           + P+GAGKTT        V G+V    G I+++   IS         R  GY+ Q+  + 
Sbjct: 35  LGPNGAGKTTTFYM----VVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIF 90

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
             L+V ++L  MA L +    +  +       +ME   I H R      LSGG+R+R+ +
Sbjct: 91  RRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH--QPTSGVFEKFD 171
           A  L   P+ +  DEP  G+D  S  ++  +++ L      V+   H  + T  V E+  
Sbjct: 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY 208

Query: 172 TVS---LLAHG 179
            VS   L+AHG
Sbjct: 209 IVSQGHLIAHG 219

Length = 241

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 11/136 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           PSG GKTTLL  +     GL     G I   G  I+R     R  G V Q   L   LTV
Sbjct: 38  PSGCGKTTLLRII----AGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            +++ +  K   +R     E+ + +  +++ +G+    +     LSGGQ++R+ALA  L 
Sbjct: 94  ADNIAYGLK---NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150

Query: 119 TEPQILFCDEPTTGLD 134
           T P +L  DEP + LD
Sbjct: 151 TSPGLLLLDEPLSALD 166

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 3   PSGAGKTTLLAALN---KRVKGLVQ-GEILLNGC-PIS------RTVMSRISGYVAQQDF 51
           PSG+GKTTLL  +N   +   G ++ G+I ++    +S      R +   + G+V Q   
Sbjct: 37  PSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV-GFVFQNFN 95

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           L    TVLE++  +    + +     E       ++  +G+  +       LSGGQ++R+
Sbjct: 96  LFPHRTVLENI--IEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           A+A  L   P+++  DEPT+ LD      V+N ++QLA E R ++   H+
Sbjct: 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203

Length = 250

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPIS----RTVMSRISGYVAQQDFLI 53
           M  SG+GK+TL+  LN+ ++   +GEIL++G     +S    R +  +    V Q   L+
Sbjct: 60  MGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118

Query: 54  EELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
              TVLE++ F  ++  + +     E  +     +E +G+        + LSGG ++R+ 
Sbjct: 119 PHRTVLENVAFGLEVQGVPKA----EREERALEALELVGLEGYADKYPNELSGGMQQRVG 174

Query: 113 LAVQLLTEPQILFCDEPTTGLD 134
           LA  L  +P IL  DE  + LD
Sbjct: 175 LARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 22/194 (11%)

Query: 2   SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELT 57
            PSG+GK+TL+  L  R+     GEIL++G  I      ++  RI G V+Q   L    T
Sbjct: 362 GPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDSLRKRI-GIVSQDPLLFSG-T 418

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVM-----ENL--GINHRRQVQISGLSGGQRKR 110
           + E++        D      E+ + +          NL  G +     +   LSGGQR+R
Sbjct: 419 IRENIALGRPDATDE-----EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
           LA+A  LL  P IL  DE T+ LD+ +   + + LK+L  + R  +   H+ ++   +  
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNA 530

Query: 171 DTVSLLAHGGLLAY 184
           D + +L +G ++  
Sbjct: 531 DRIIVLDNGRIVER 544

Length = 567

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFLIEELT-VL 59
           SG+GK+T L  +N   K   +G I++NG  I+          VA   Q   L   LT V 
Sbjct: 40  SGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98

Query: 60  EHLQFMAKLT-----MDRRTTWLELNKTITR-----VMENLGINHRRQVQI-SGLSGGQR 108
           +H    + +T     M+     L L+K   R      +  +GI+ R Q +    LSGGQ+
Sbjct: 99  QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +R+++A  L  EP++L  DEPT+ LD      V+ +++QLA E + ++   H+
Sbjct: 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211

Length = 257

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           GLSGGQ++R+A+A  L  +P+IL  DEPT GLD    + ++ L+      ++ V    H 
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235

Query: 162 PTSGVFEKFDTVSLLAHGGLL 182
               V E  D V ++  G +L
Sbjct: 236 -MEHVLEVADEVIVMDKGKIL 255

Length = 320

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 20/202 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVA---QQDFLI 53
           M  +GAGK+TLL  L+    G  Q   G IL++G  +   +  + ++  VA   Q+  L+
Sbjct: 36  MGENGAGKSTLLKILS----GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91

Query: 54  EELTVLEHL---QFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
            E+TV E+L   Q   K  + +RR     LN      +E+LG++      +  LS GQR+
Sbjct: 92  PEMTVAENLYLGQLPHKGGIVNRRL----LNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ 147

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
            + +A  L    +++  DEPT+ L +     +  ++++L  E R+++   H+    +F  
Sbjct: 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR-MEEIFAL 206

Query: 170 FDTVSLLAHGGLLAYHGQVSKV 191
            D +++   G  +A    +++V
Sbjct: 207 CDAITVFKDGRYVATFDDMAQV 228

Length = 501

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 3   PSGAGKTTLLAALNK---RVKGLVQ--GEILLNGCPISRTVMSRISGYVA---QQDFLIE 54
           P+GAGKTTLL+ L        G V   G     G      +  RI G V+    + F + 
Sbjct: 65  PNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-ETIFELRKRI-GLVSSELHERFRVR 122

Query: 55  ELTVLEHL--QFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           E TV + +   F A + +     T  +L      ++E LG  H        LS G+++R+
Sbjct: 123 E-TVRDVVLSGFFASIGIYQEDLTAEDLAAAQW-LLELLGAKHLADRPFGSLSQGEQRRV 180

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
            +A  L+ +P++L  DEP  GLD  +   ++N L++LA
Sbjct: 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218

Length = 257

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 27/144 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           PSG GKTT+L    + + G      G I+L+G  I+     +R    V Q   L   +TV
Sbjct: 48  PSGCGKTTVL----RLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRKR 110
            E++ F  ++   ++T   E+     RVME L     R VQ+          LSGGQ++R
Sbjct: 104 FENVAFGLRM---QKTPAAEIT---PRVMEAL-----RMVQLEEFAQRKPHQLSGGQQQR 152

Query: 111 LALAVQLLTEPQILFCDEPTTGLD 134
           +A+A  ++ +P++L  DE  + LD
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALD 176

Length = 375

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 31/171 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC---PISRTVMSRISGYVAQQDFLIEEL 56
             G+GK+TLL    K + GL Q   G +LL+G     I    + R  GYV Q   L    
Sbjct: 499 RIGSGKSTLL----KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQ---VQIS----GLSG 105
           T+ +++   A    D           I R  E  G    +        +QI      LSG
Sbjct: 554 TLRDNIALGAPYADDEE---------ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GQR+ +ALA  LL +P IL  DEPT+ +D+ S     + LK+      +V+
Sbjct: 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVL 655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 19/202 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
           + P+G+GK+TLL    + + G +    G + L G  +   SR   +R    V Q      
Sbjct: 33  LGPNGSGKSTLL----RLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88

Query: 55  ELTVLEHLQFMAKLTMDRRTTW----LELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
            LTV +    +A   +  R+ W          + R +    ++H     +S LSGG+R+R
Sbjct: 89  PLTVRD---VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQR 145

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
           + +A  L  EP++L  DEPT  LD  +    + L+++LA     V+ A+H          
Sbjct: 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA-SYC 204

Query: 171 DTVSLLAHGGLLAYHGQVSKVL 192
           D V +L  G ++A  G   +VL
Sbjct: 205 DHVVVLDGGRVVA-AGPPREVL 225

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 19/169 (11%)

Query: 3   PSGAGKTTLLAALNKRVK----GLVQGEILLN-----GCPISRTVMSRISGYVAQQDFLI 53
           PSG GK+T+L  LN+  +      V+GE+LL+     G  +    + R  G V Q+    
Sbjct: 38  PSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI------SGLSGGQ 107
             +++ +++  +A L ++      +L++ + + +   G N   +V+        GLSGGQ
Sbjct: 98  PTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLR--GANLWNEVKDRLDKPGGGLSGGQ 153

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           ++RL +A  +  EP +L  DEP + LD  S   + +L+ +L  +  IVI
Sbjct: 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202

Length = 258

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 60.0 bits (145), Expect = 8e-11
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 4    SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
            +GAGKTT    L      +  G+  + G    +++++ IS      GY  Q D + + LT
Sbjct: 1974 NGAGKTTTFKMLTGDTT-VTSGDATVAG----KSILTNISDVHQNMGYCPQFDAIDDLLT 2028

Query: 58   VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
              EHL   A+L   R     E+ K     +++LG++          SGG +++L+ A+ L
Sbjct: 2029 GREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085

Query: 118  LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            +  P ++  DEPTTG+D  +   + N +  +  E R V+   H
Sbjct: 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            LSGGQ++R+ALA  L  EP  L  DEPT GLD      ++ +   L  + + +I   H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 29/172 (16%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQD 50
           M  SG+GK+TLL  +N     L++   G++L++G  I+       R +  +    V Q  
Sbjct: 56  MGLSGSGKSTLLRCIN----RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111

Query: 51  FLIEELTVLEH------LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
            L+   TVLE+      +Q + +   + R             +E +G+          LS
Sbjct: 112 ALLPHRTVLENVAFGLEVQGVPRAEREERAA---------EALELVGLEGWEHKYPDELS 162

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GG ++R+ LA  L  +P IL  DE  + LD      + + L +L  E +  I
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 20/137 (14%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-----VMSRISGYVAQQDFLIEEL 56
           G GKTTLL  L     GL+    G I L+G  I++        + I  YV Q   +   L
Sbjct: 36  GVGKTTLLKTL----MGLLPVKSGSIRLDGEDITKLPPHERARAGI-AYVPQGREIFPRL 90

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAV 115
           TV E+L         R     +    +  V++ +    RR     G LSGGQ+++LA+A 
Sbjct: 91  TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM--LGRR----GGDLSGGQQQQLAIAR 144

Query: 116 QLLTEPQILFCDEPTTG 132
            L+T P++L  DEPT G
Sbjct: 145 ALVTRPKLLLLDEPTEG 161

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRIS---GYVAQ--QDFLI 53
           +G+GK+TL+  LN    GL++   G+I+++G  I+  +  +S I    G V Q  +  L 
Sbjct: 42  TGSGKSTLIQHLN----GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97

Query: 54  EELTVLEHLQFMAK---LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQR 108
           EE T+ + + F      L+ +      E+   + R M  +G+++      S   LSGGQ+
Sbjct: 98  EE-TIEKDIAFGPINLGLSEE------EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
           +R+A+A  +  EP+IL  DEPT GLD    + ++N +K+L  E  + I  +      V +
Sbjct: 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK 210

Query: 169 KFDTVSLLAHGGLLAYHGQVSKVLK 193
             D + ++ + G     G   +V K
Sbjct: 211 LADRI-IVMNKGKCELQGTPREVFK 234

Length = 287

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 37/199 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
            +G GK+TLL  L  R     QGEILLNG PI+       R  +S +S     Q   +  
Sbjct: 374 RTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSEAALRQAISVVS-----QRVHLFS 427

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRV-MENL-----GINH-----RRQVQISGLS 104
            T+ ++L   A    D       L + + +V +E L     G+N       RQ     LS
Sbjct: 428 ATLRDNLLLAAPNASDE-----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ-----LS 477

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
           GG+++RL +A  LL +  +L  DEPT GLD+ +   ++ LL +   +++ V+   H+ T 
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTG 536

Query: 165 GVFEKFDTVSLLAHGGLLA 183
              E+FD + ++ +G ++ 
Sbjct: 537 --LEQFDRICVMDNGQIIE 553

Length = 574

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 32/166 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQG------EILLNGCPISRTV-------MSRISGYVAQQ 49
           PSGAGK++LL  LN     L++        I  N    S+T        + R  G V QQ
Sbjct: 36  PSGAGKSSLLRVLN-----LLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90

Query: 50  DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL------GINHRRQVQISGL 103
             L   LTV ++L     +    R   L  ++ + R  + L          R  +    L
Sbjct: 91  YNLWPHLTVQQNL-----IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH---L 142

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           SGGQ++R+A+A  L+ EPQ+L  DEPT  LD      +V+++++LA
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA 188

Length = 242

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 22/172 (12%)

Query: 33  PISRTVMSRISGYVAQQDF-LIEELTVLEH-------LQFMAKLTMDRRTTWLELNKTIT 84
            + R +  RI+  + Q+ F L  + TVL++       + +  K  + R    +E      
Sbjct: 102 KLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE------ 154

Query: 85  RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
             M  L   HR       LSGG+++R+ LA QL  EP +   DEPT  LD  +A  V N 
Sbjct: 155 --MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210

Query: 145 LKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
           L++    S I ++   H P   V E     ++    G +   G   +V+  F
Sbjct: 211 LEEAVKASGISMVLTSHWPE--VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 32/175 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI--SRTVMSRIS---GYVAQQ--D 50
           PSG GK+TLL   N R+  L      +GEILL+G  I   +  ++ +    G V Q+   
Sbjct: 47  PSGCGKSTLLRTFN-RMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105

Query: 51  FLIEELTVLEHLQF-------MAKLTMDRRTTWLELNKTI--TRVMENLGINHRRQVQIS 101
           F    +++ +++ F       +++  MD R  W  L K      V + L  +        
Sbjct: 106 F---PMSIYDNIAFGVRLFEKLSRAEMDERVEW-ALTKAALWNEVKDKLHQSG------Y 155

Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
            LSGGQ++RL +A  +   P++L  DEP + LD  S   +  L+ +L  +  +VI
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVI 210

Length = 260

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 25/162 (15%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVA--------QQ 49
           M PSG GKTTLL    + + G +    GEIL +G  I    MSR   Y          Q 
Sbjct: 39  MGPSGIGKTTLL----RLIGGQIAPDHGEILFDGENIP--AMSRSRLYTVRKRMSMLFQS 92

Query: 50  DFLIEELTVLEHLQFMAKLTMDRRTTWLE---LNKTITRVMENLGINHRRQVQISGLSGG 106
             L  ++ V +++ +       R  T L    L+ T+   +E +G+    ++  S LSGG
Sbjct: 93  GALFTDMNVFDNVAYPL-----REHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGG 147

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
             +R ALA  +  EP ++  DEP  G D  +   +V L+ +L
Sbjct: 148 MARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189

Length = 269

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 22/201 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS-RISGYVAQQDFLIEEL 56
           + PSGAGK+TLL      + G      GEIL+NG   + +  + R    + Q++ L   L
Sbjct: 31  LGPSGAGKSTLLNL----IAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86

Query: 57  TVLEHLQF----MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
           TV +++        KL  ++R       + +      +G+    +     LSGGQR+R+A
Sbjct: 87  TVAQNIGLGLSPGLKLNAEQR-------EKVEAAAAQVGLAGFLKRLPGELSGGQRQRVA 139

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFD 171
           LA  L+ E  IL  DEP + LD      ++ L+ QL  E    ++   H P        D
Sbjct: 140 LARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIAD 198

Query: 172 TVSLLAHGGLLAYHGQVSKVL 192
            V  L +G  +A  G   ++L
Sbjct: 199 RVVFLDNGR-IAAQGSTQELL 218

Length = 231

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
           P+GAGKTTL+  L  R     +G+IL++G  I    +SR S     G V Q  FL    T
Sbjct: 37  PTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRD--ISRKSLRSMIGVVLQDTFLFSG-T 92

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKT--ITRVMENL--GINHRRQVQISGLSGGQRKRLAL 113
           ++E+++ + +         +E  K       +  L  G +         LS G+R+ LA+
Sbjct: 93  IMENIR-LGRPNATD-EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           A  +L +P+IL  DE T+ +D+ +   +   L++L
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           + LSGGQR+R+ALA  L  +P+++  DEP + LD      + N +K L      V+   H
Sbjct: 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512

Query: 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
           +P   +    D + +L  G +  + G+  +VL   
Sbjct: 513 RP--SLLGCVDKILVLQDGRIARF-GERDEVLAKL 544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLLA +     G   G I   G P+     T ++R   Y++QQ      + V 
Sbjct: 33  PNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG--QRKRLALAVQL 117
            +L     L    +T    LN     V   L ++ +     + LSGG  QR RLA AV L
Sbjct: 91  HYLT----LHQPDKTRTELLND----VAGALALDDKLGRSTNQLSGGEWQRVRLA-AVVL 141

Query: 118 LTEP------QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171
              P      Q+L  DEP   LD    + +  LL  L  +   ++ + H   +       
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD-LNHTLRHAH 200

Query: 172 TVSLLAHGGLLAYHGQVSKVL 192
              LL  G LLA  G+  +VL
Sbjct: 201 RAWLLKRGKLLA-SGRREEVL 220

Length = 248

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 28/173 (16%)

Query: 3   PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMS-----RISGYVAQQD-- 50
           PSG GK+TLL   N R+  LV     +GEI L+G  I    +      R  G V Q+   
Sbjct: 59  PSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117

Query: 51  F---LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGL 103
           F   + E +     LQ +     +RR     L++ + R +    +      R      GL
Sbjct: 118 FPKSIYENVVYGLRLQGIN----NRRV----LDEAVERSLRGAALWDEVKDRLHENAFGL 169

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           SGGQ++RL +A  +  EP++L  DEPT+ LD  S   +  L+ +L  +  IVI
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVI 222

Length = 272

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 22/172 (12%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-SRTV----MSRISGYVAQQD 50
           + PSG GK+T L  LN R+  L+     +GE+LL+G  I  + V    + +  G V Q+ 
Sbjct: 36  IGPSGCGKSTFLRCLN-RMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94

Query: 51  FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQIS----GLS 104
                +++ +++ +  ++    D++    EL+K +   ++   +    +  +      LS
Sbjct: 95  NPFP-MSIYDNVAYGPRIHGIKDKK----ELDKIVEWALKKAALWDEVKDDLKKSALKLS 149

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  +  +P ++  DEPT+ LD  S   + +L+ +L  E  IVI
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201

Length = 251

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 32/175 (18%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVLE 60
           SG+GK+TL   L +R      G +L++G          + R  G V Q++ L    ++ +
Sbjct: 37  SGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRD 94

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVME--------------NLGINHRRQVQISGLSGG 106
           ++  +A   M              RV+E                G +     Q +GLSGG
Sbjct: 95  NIA-LADPGMSME-----------RVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGG 142

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           QR+R+A+A  L+  P+IL  DE T+ LD  S + ++  +  + C  R VI   H+
Sbjct: 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHR 196

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
            +GAGKTTLL  L     GL+    G+I ++G   +R   SR   Y+     L  +L+ L
Sbjct: 45  DNGAGKTTLLRVL----AGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E+L F+  L   R        +     +  +G+       +  LS GQ+KRLALA   L+
Sbjct: 101 ENLHFLCGLHGRRA------KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS 154

Query: 120 EPQILFCDEPTTGLD 134
              +   DEP   LD
Sbjct: 155 PAPLWLLDEPYANLD 169

Length = 214

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 78  ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           E+ + +   +  +   H R   I  LS GQ+KR+A+A  L+ + + L  DEPT GLD   
Sbjct: 112 EITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171

Query: 138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184
              ++ +++++  +   VI + H     ++E  D V +L  G +L +
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTH 217

Length = 271

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-----SRTVMSRISGYVAQQD 50
           + PSG GK+T L A+N R+  L+      G ++ +G  I        ++ +  G V Q+ 
Sbjct: 71  IGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129

Query: 51  FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
               + ++ +++ +  +L    D++     + K++ +      ++ R      GLSGGQ+
Sbjct: 130 NPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +RL +A  L  EP+IL  DEPT+ LD  +   + +L+++L     I+I
Sbjct: 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236

Length = 286

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 50/196 (25%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
           P G+GK++LL+AL      L  GE+  L+G   S +V   I+ YV+Q+ ++    T+ E+
Sbjct: 39  PVGSGKSSLLSAL------L--GELEKLSG---SVSVPGSIA-YVSQEPWIQNG-TIREN 85

Query: 62  LQFMAKLTMDRRTTWLELNKTI-----------------TRVMENLGINHRRQVQISGLS 104
           + F      +R        K I                 T + E  GIN         LS
Sbjct: 86  ILFGKPFDEER------YEKVIKACALEPDLEILPDGDLTEIGEK-GIN---------LS 129

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPT 163
           GGQ++R++LA  + ++  I   D+P + +D++   ++  N +  L   ++  I   HQ  
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189

Query: 164 SGVFEKFDTVSLLAHG 179
             +    D + +L +G
Sbjct: 190 --LLPHADQIVVLDNG 203

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 23/163 (14%)

Query: 4   SGAGKTTLLAALNKRVKGLV---QGEILLNG-------CPISRTVMSRISGYVAQQDFLI 53
           SGAGKT+L+ A    + GL    +G I+LNG         I      R  GYV Q   L 
Sbjct: 33  SGAGKTSLINA----ISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
               V  +L++    +M  +           +++  LGI          LSGG+++R+A+
Sbjct: 89  PHYKVRGNLRYGMAKSMVAQ---------FDKIVALLGIEPLLDRYPGSLSGGEKQRVAI 139

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
              LLT P++L  DEP   LD      ++  L++LA E  I I
Sbjct: 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182

Length = 352

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 18/168 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLL+ ++ R+     GEI ++G  ++ T    +++    + Q++ +   LTV 
Sbjct: 35  PNGAGKSTLLSMMS-RLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVR 93

Query: 60  EHLQF------MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           + + F        +LT + R       + I   +E L +       +  LSGGQR+R  +
Sbjct: 94  DLVGFGRFPYSQGRLTKEDR-------RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFI 146

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIH 160
           A+ L  +   +  DEP   LD   +  ++ +L++LA E  + ++  +H
Sbjct: 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH 194

Length = 252

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVA------QQDFLIEELT 57
           GAG+T L+ AL     G  +G + +NG P+  R     I   +A      ++  ++  L 
Sbjct: 296 GAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILG 355

Query: 58  VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGINHRRQ-VQISGLSGGQRKRL 111
           V +++       +      + ++     + I   ++ L +      + I  LSGG +++ 
Sbjct: 356 VGKNITLSV---LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
            LA  LLT P++L  DEPT G+D  +   +  L+ QLA E   +I
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNG-CPISR-----------TVMSRISGYVAQQDFL 52
           GAGK+TL+  LN  V  L  G I+      ++R           TV   ++  + +Q   
Sbjct: 39  GAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEY 97

Query: 53  IEELTVLEH----------LQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQI 100
           ++    + H          L  +AKL   +D    W +L   I  V+  LG++      +
Sbjct: 98  LKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLW-QLENRINEVLAQLGLD--PDAAL 154

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           S LSGG  ++ AL   L++ P +L  DEPT  LD
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 14/168 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-SRTV----MSRISGYVAQQD 50
           + PSG GK+T L   N R+  L+     +GEI ++G  I  + V    + +  G V Q+ 
Sbjct: 35  IGPSGCGKSTFLRLFN-RMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLE--LNKTITRVMENLGINHRRQVQISGLSGGQR 108
               + ++ E++ +  ++   +   ++   + +T+        +  + +     LSGGQ+
Sbjct: 94  NPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ 152

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +RL +A  +   P +L  DEP + LD  S   V  L+ +L  +  IVI
Sbjct: 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200

Length = 250

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 23/172 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNG-------------CPISRTVMSRISGYVAQ- 48
           PSG+GK+T+L  L   ++ + +G+I + G              P     + ++   +   
Sbjct: 34  PSGSGKSTILRIL-MTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92

Query: 49  -QDF-LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
            Q F L    TVL+++    +  L M R     E  K    +++ +G+  +     + LS
Sbjct: 93  FQSFNLFPHKTVLDNVTEAPVLVLGMARA----EAEKRAMELLDMVGLADKADHMPAQLS 148

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++R+A+A  L   P+++  DE T+ LD      V+N++++LA E  + +
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 26/172 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQDFL 52
           PSG GK+TLL   N R+  L+      G+IL NG  I  +    ++     G V Q+   
Sbjct: 40  PSGCGKSTLLRCFN-RMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98

Query: 53  IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL--------GINHRRQVQISGLS 104
             + ++ E++ +  ++  ++        KT+  ++E           +  R       LS
Sbjct: 99  FPK-SIYENVAYGPRIHGEKN------KKTLDTIVEKSLKGAALWDEVKDRLHDSALSLS 151

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  L   P+++  DEP + LD  +   + +L++ L  E  ++I
Sbjct: 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVII 203

Length = 253

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 22/157 (14%)

Query: 4   SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS--------RISGYVAQQDFL 52
           SGAGK+TL+  +N     L     G +L++G  +  T +S        R  G + Q   L
Sbjct: 40  SGAGKSTLIRCIN----LLERPTSGRVLVDGQDL--TALSEKELRKARRQIGMIFQHFNL 93

Query: 53  IEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           +   TV +++    +L    +     E+   +T ++E +G++ +     + LSGGQ++R+
Sbjct: 94  LSSRTVFDNVALPLELAGTPKA----EIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           A+A  L + P++L CDE T+ LD  +  +++ LLK +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186

Length = 343

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 20/158 (12%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVM----SRISGYVAQQD---FLI 53
           SG+GK+T   AL + +    QGEI  +G P+   +R  +     RI   V  QD    L 
Sbjct: 321 SGSGKSTTGLALLRLINS--QGEIWFDGQPLHNLNRRQLLPVRHRIQ--VVFQDPNSSLN 376

Query: 54  EELTVLEHLQFMAK-LTMDRRT-TWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKR 110
             L VL   Q + + L + + T +  +  + +  VME +G++   R    +  SGGQR+R
Sbjct: 377 PRLNVL---QIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           +A+A  L+ +P ++  DEPT+ LD      ++ LLK L
Sbjct: 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471

Length = 529

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 15/193 (7%)

Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           SG GK+TLL      + GL Q   G ++L G  I+     R+   V Q   L+  LTV E
Sbjct: 20  SGCGKSTLL----NLISGLAQPTSGGVILEGKQITEPGPDRM--VVFQNYSLLPWLTVRE 73

Query: 61  HLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           ++       + D   +  E    +   +  +G+      +   LSGG ++R+A+A  L  
Sbjct: 74  NIALAVDRVLPDLSKS--ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI 131

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAH 178
            P++L  DEP   LD+ +  N+   L Q+  E R+ V+   H     +    D V +L +
Sbjct: 132 RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLS-DRVVMLTN 190

Query: 179 GGLLAYHGQVSKV 191
           G   A  GQ+ +V
Sbjct: 191 GP-AANIGQILEV 202

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
            SG GK+T+++ L +R      GEILL+G  I     R + S+I G V+Q+  L +  T+
Sbjct: 37  SSGCGKSTVVSLL-ERFYDPTSGEILLDGVDIRDLNLRWLRSQI-GLVSQEPVLFD-GTI 93

Query: 59  LEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
            E++++    A                I   + +L   +   V   G  LSGGQ++R+A+
Sbjct: 94  AENIRYGKPDATDEEVEEAAKKAN---IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAI 150

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           A  LL  P+IL  DE T+ LD+ S   V   L + A + R  I
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALDR-AMKGRTTI 192

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 26/189 (13%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEELT 57
           GAGK+TL+  L     GL Q   GEI ++G  +             G V Q   L+  LT
Sbjct: 40  GAGKSTLMKILF----GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V E++    + +        +    I  + E  G+      +++ LS G+++R+ +   L
Sbjct: 96  VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF------- 170
               ++L  DEPT  L    A+ +  +L++LA E + +I   H        K        
Sbjct: 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH--------KLKEVMAIA 207

Query: 171 DTVSLLAHG 179
           D V++L  G
Sbjct: 208 DRVTVLRRG 216

Length = 501

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQDFLIEE 55
           PSG GK+TLL    K V  L+    G +L  G  IS         ++S Y AQ   L  +
Sbjct: 41  PSGCGKSTLL----KIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-YCAQTPTLFGD 95

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALA 114
            TV ++L F  ++   +              +E   + +      I+ LSGG+++R++L 
Sbjct: 96  -TVYDNLIFPWQIRNQQPDP-----AIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L   P++L  DE T+ LD  + +NV  ++ +   E  I +  +      +      ++
Sbjct: 150 RNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVIT 209

Query: 175 LLAHGG 180
           L  H G
Sbjct: 210 LQPHAG 215

Length = 225

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 17/173 (9%)

Query: 1   MSPSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPISRT-----VMSRISGYVAQ--Q 49
           + PSG GK+T L  LN+    V+G+ ++G ++  G  I         + R  G V Q   
Sbjct: 39  IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98

Query: 50  DFLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQ 107
            FL   +++ +++ +  K+  T D++     + +++ +      +  +       LSGGQ
Sbjct: 99  PFL---MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           ++RL +A  L  EP ++  DEPT+ LD  S   +  L+  L  ES  +I   H
Sbjct: 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTH 207

Length = 254

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-MSRISGYVAQQDFLIEELTVL 59
           +  SG GK+TLL  L    +    G+I+L+G  +S      R    + Q   L   +TV 
Sbjct: 51  LGASGCGKSTLLRML-AGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV---QISGLSGGQRKRLALAVQ 116
           +++ F   L  D+    L   +  +RV E LG+ H ++    +   LSGGQR+R+ALA  
Sbjct: 110 QNIAF--GLKQDK----LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARS 163

Query: 117 LLTEPQILFCDEPTTGLD 134
           L   P++L  DEP   LD
Sbjct: 164 LAKRPKLLLLDEPMGALD 181

Length = 377

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
           + PSG GK+TLL ALN R+  +V     +G +LL+   I    +  ++     G V QQ 
Sbjct: 36  IGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI--NHRRQVQISG--LSGG 106
               + ++ +++ F  +  M   T    L++ + + +    +    +  +  SG  LSGG
Sbjct: 95  NPFPK-SIFDNVAFGPR--MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           Q++RL +A  L  EP+++  DEP + LD  S   +  L+++L     I I
Sbjct: 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAI 201

Length = 251

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGGQR+R+ +A+ L  EP +L  DEPTT LD      +++LLK+L  E  + I  I   
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217

Query: 163 TSGVFEKFDTVSLLAHG 179
              V +  D V ++ HG
Sbjct: 218 LGIVRKFADRVYVMQHG 234

Length = 534

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEIL----------LNGCPISRTVMSRISGYVAQQD 50
           + PSG GK+T+L +LN R+  LV+G             + G  +   V+ R  G V QQ 
Sbjct: 40  IGPSGCGKSTVLRSLN-RMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS--GGQR 108
                +++ +++ F  +L   +      +   +      L    + ++++SGLS  GGQ+
Sbjct: 99  NPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA--LWDEVKDKLKVSGLSLSGGQQ 155

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           +RL +A  + TEP++L  DEP + LD  +   V  L+ +L
Sbjct: 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195

Length = 261

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 26/164 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGL-----VQGEILLNG----CPISRTVMSRIS-GYVAQQD-- 50
           PSG+GK+TLL ++N R+  L     + G I+ NG     P + TV  R   G V QQ   
Sbjct: 39  PSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97

Query: 51  FLIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLS 104
           F    +++ E++ +  +L    D++     L++ + + ++   I      R      GLS
Sbjct: 98  F---PMSIYENVVYGLRLKGIKDKQV----LDEAVEKSLKGASIWDEVKDRLHDSALGLS 150

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           GGQ++R+ +A  L T P+I+  DEPT+ LD  SA  +   L  L
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194

Length = 252

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 26/173 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFL-----IE 54
           PSG+GK+TL   L +R+     G++L++G  ++      + R  G V Q++ L      +
Sbjct: 491 PSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549

Query: 55  ELTV------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
            + +       EH+   AKL           +  I+ + +  G N     + + LSGGQR
Sbjct: 550 NIALCNPGAPFEHVIHAAKLA--------GAHDFISELPQ--GYNTEVGEKGANLSGGQR 599

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +R+A+A  L+  P+IL  DE T+ LD  S   ++  ++++ C  R VI   H+
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHR 651

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
           PSG+GK+T+  AL +       G++LL+G PIS    + + S++S  V Q+  L    ++
Sbjct: 48  PSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS-LVGQEPVLFAR-SL 104

Query: 59  LEHLQF-MAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQ 116
            +++ + +   + +      +     + + E   G +     + S LSGGQ++R+A+A  
Sbjct: 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
           L+  PQ+L  DE T+ LD+ S   V   L  
Sbjct: 165 LIRNPQVLILDEATSALDAESEQQVQQALYD 195

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 23/172 (13%)

Query: 1   MSPSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPISRTV---MSRIS-GYVAQQ--D 50
           + PSG GK+TLL  LN+    ++G+ + G++ ++G  I   +     RI  G V Q+   
Sbjct: 35  IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94

Query: 51  FLIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLS 104
           F    +++ E++ +   A+   D++     L++ + R +        +  R +    GLS
Sbjct: 95  F---PMSIYENVAYGLRAQGIKDKKV----LDEVVERSLRGAALWDEVKDRLKSHAFGLS 147

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  +  EP ++  DEPT+ LD  + + +  L+++L     IVI
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199

Length = 249

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
           + PSG GK+T +  LN  ++ +    + GE+  NG  I +  +  +      G V Q+  
Sbjct: 44  IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQ 107
              + ++ +++ +  ++   +     +L + + + ++++     +  R   Q   LSGGQ
Sbjct: 104 PFPQ-SIFDNVAYGPRIHGTKNKK--KLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           ++RL +A  L T P +L  DEPT+ LD  S   +  L+ +L  +  IVI
Sbjct: 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209

Length = 259

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 17/170 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-SRTV----MSRISGYVAQQD 50
           + PSG GK+T+L ++N R+  L     V G+ILL+   I  R V    + R  G V Q+ 
Sbjct: 36  IGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGG 106
                +++ +++  +A   ++ R    E ++ +   ++ +     +  R +     LSGG
Sbjct: 95  NPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           Q++RL +A  +  +P+++  DEP + LD  S   +  L+++L  +  I+I
Sbjct: 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIII 202

Length = 252

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 43/214 (20%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVL 59
           PSG+GK+TL   L  R   +  G IL++G      +   + R  G V+Q  FL  + TV 
Sbjct: 36  PSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVA 93

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV----------QI----SGLSG 105
           E++ +                 T   V E     +  +            I      LSG
Sbjct: 94  ENIAYGR------------PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG 141

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
           GQR+R+A+A  LL +P IL  DE T+ LD+ S   V   L++L  ++R      H+ ++ 
Sbjct: 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST- 199

Query: 166 VFEKFDTVSLLAHGG---------LLAYHGQVSK 190
             E  D + +L  G          LLA  G  +K
Sbjct: 200 -IENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTVL 59
           +GAGKTTLL  L    +    G I+ +G  I+    ++I       V +   +   +TV 
Sbjct: 40  NGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQLL 118
           E+L  M     +R     +  + I  V E     H R++Q +G +SGG+++ LA+   L+
Sbjct: 99  ENLA-MGGFFAERD----QFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM 153

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           ++P++L  DEP+ GL       + + ++QL  +
Sbjct: 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186

Length = 237

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSR--ISGYVAQQDFLIEELTVLE 60
           PSGAGK+TLL  L         G + LNG   + T  SR  +S  + Q++ L   LTV +
Sbjct: 33  PSGAGKSTLLN-LIAGFLTPASGSLTLNGQDHTTTPPSRRPVS-MLFQENNLFSHLTVAQ 90

Query: 61  H----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +    L    KL   +R       + +  +   +GI          LSGGQR+R+ALA  
Sbjct: 91  NIGLGLNPGLKLNAAQR-------EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARC 143

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
           L+ E  IL  DEP + LD      ++ L+ Q+ C+ R
Sbjct: 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQV-CQER 179

Length = 232

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.9 bits (129), Expect = 6e-09
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI--SRTVMSRIS---GYVAQQD 50
           + PSG GK+T +  LN R+  L     V+G +   G  I   R  ++R+    G V Q+ 
Sbjct: 39  IGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS----GLSGG 106
                +++ E++ +  +++   +    +L++ +   ++   +    + +++    GLSGG
Sbjct: 98  NPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           Q++RL +A  L  +P++L  DEP + LD  +   V  L+  L  E  I I
Sbjct: 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204

Length = 259

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 4   SGAGKT-TLLAALNKRVKGL--VQGEILLNGCPI-SRTVMSRISGYVAQ--QDFLIEELT 57
           SG+GK+ T LA L     GL    GEILL+G P+   ++  R    + Q  +       T
Sbjct: 21  SGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80

Query: 58  VLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS---GLSGGQRKR 110
           +  H    L+ + KL+   R         I   +E +G+    +V       LSGG  +R
Sbjct: 81  MGNHAIETLRSLGKLSKQAR-------ALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR 133

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           + +A+ LL EP  L  DEPTT LD  +   V+ LL++L
Sbjct: 134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GLSGGQ++RL +A  L  +P++L  DEPT+ LD  S   +  L+ +L  +  IVI
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVI 203

Length = 253

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
            SG+GK+TL   L  R      G+ILL+G  ++     ++  +++  V+Q   L  + T+
Sbjct: 366 RSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA-LVSQDVVLFND-TI 422

Query: 59  LEHLQFMAKLTMDR-RTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
             ++ +      DR               ++ L +     +  +G  LSGGQR+RLA+A 
Sbjct: 423 ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
            LL +  IL  DE T+ LD+ S   V   L++L  + R  +   H+ ++   EK D + +
Sbjct: 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLST--IEKADRIVV 539

Query: 176 LAHG 179
           +  G
Sbjct: 540 MDDG 543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.4 bits (128), Expect = 8e-09
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 24/173 (13%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
           + PSG GK+T +  LN R+  L+     +G I L+G  I    +  +      G V Q+ 
Sbjct: 35  IGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG-------INHRRQVQISGL 103
               + ++ +++ +  ++  +    ++E      RV E+L        +  +      GL
Sbjct: 94  NPFPK-SIFDNVAYGLRIHGEDDEDFIE-----ERVEESLKAAALWDEVKDKLDKSALGL 147

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           SGGQ++RL +A  +   P+++  DEP + LD  S   + +L+ +L  +  IVI
Sbjct: 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200

Length = 250

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.4 bits (128), Expect = 9e-09
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
           + PSG GK+T L ++N R+  L+     +GEIL  G  I  + ++ ++     G V Q+ 
Sbjct: 53  IGPSGCGKSTFLRSIN-RMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLE--LNKTITRVMENLGINHRRQVQISGLSGGQR 108
               + ++  ++    K   +RR + L+  + +++T+      +  R       LSGGQ+
Sbjct: 112 NPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +RL +A  L  +P +L  DEP + LD  S   +  L+ +L  E  I+I
Sbjct: 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218

Length = 268

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD-SYSANNVVNLLKQL 148
           LSGGQR+R+ +A  L   P+++  DEP + LD S  A  ++NLLK L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQA-QILNLLKDL 155

Length = 268

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 18/167 (10%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVA------QQDFLIEELT 57
           GAG+T L+  L     G  +GEI ++G P+  R     I+  +A      ++D ++  + 
Sbjct: 298 GAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMG 357

Query: 58  VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGINHRRQVQ-ISGLSGGQRKRL 111
           V +++   A   +DR T    ++     KTI   ++ L +        I+ LSGG +++ 
Sbjct: 358 VGKNITLAA---LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVI 156
            LA  LL  P+IL  DEPT G+D  +   +  L+ QL  +  + IVI
Sbjct: 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461

Length = 506

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 29/199 (14%)

Query: 1   MSPSGAGKTTLLAAL--NKRVKGLVQGEILLNG-CPISRTVMSR--------------IS 43
           M P+G+GK+TL   +  +   + +  G IL  G   +      R              I 
Sbjct: 32  MGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90

Query: 44  GYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQI 100
           G V+  +FL   L      +    L +      L+  K +   +  LG++     R V  
Sbjct: 91  G-VSNLEFLRSALNARRSARGEEPLDL------LDFLKLLKAKLALLGMDEEFLNRSVNE 143

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            G SGG++KR  +    L EP++   DE  +GLD  +   V   + +L    R  +   H
Sbjct: 144 -GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202

Query: 161 QPTSGVFEKFDTVSLLAHG 179
                 + K D V +L  G
Sbjct: 203 YQRLLNYIKPDYVHVLLDG 221

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 66/191 (34%)

Query: 3   PSGAGKTTLLAALNKRVKGL-----VQGEILLNGC------------------------P 33
           PSG GK+T L  +N R+  L     V+GE+   G                         P
Sbjct: 73  PSGCGKSTFLRCIN-RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131

Query: 34  ISRTVMS------RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVM 87
             +++        +I GY    D  +EE             ++ R   W E+        
Sbjct: 132 FPKSIYDNVAYGLKIQGYDGDIDERVEE-------------SLRRAALWDEVKD------ 172

Query: 88  ENLGINHRRQVQISG--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
                    Q+  SG  LSGGQ++RL +A  +  +P+++  DEP + LD  + + + +L+
Sbjct: 173 ---------QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLI 223

Query: 146 KQLACESRIVI 156
           ++LA E  +VI
Sbjct: 224 EELAEEYTVVI 234

Length = 285

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           LSGG+++R+A+A  +L  P IL  DE T+ LD+++   +   L+ +  + R  I   H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           + LSGGQR+R+ALA  L  +P ++  DEP + LDS     +   +         V+   H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530

Query: 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
           +P        D + +L  G + A+ G   +VL   
Sbjct: 531 RP--SALASVDKILVLQDGRIAAF-GPREEVLAKV 562

Length = 580

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 86  VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
           +++ L + H     I  LSGG+ +R+A+A  L  +    F DEP++ LD     N   L+
Sbjct: 123 LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182

Query: 146 KQLACESRIVICAIH 160
           ++LA +   V+   H
Sbjct: 183 RELAEDDNYVLVVEH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTVL 59
           +G+GK++LL AL  R+  L  G IL++G  IS      + SRIS  +  QD ++   T+ 
Sbjct: 39  TGSGKSSLLLAL-FRLVELSSGSILIDGVDISKIGLHDLRSRIS--IIPQDPVLFSGTIR 95

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            +L    + + +     LE       V     G++   +     LS GQR+ L LA  LL
Sbjct: 96  SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            + +IL  DE T  +D  +   +   +++ A +   V+   H
Sbjct: 156 RKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAH 196

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGGQ +R+A+A  +  EP+IL  DEP  GLD      ++ L K        VI   H  
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN- 204

Query: 163 TSGVFEKFDTVSLLAHGGLL 182
              V E  D V +L HG L+
Sbjct: 205 MDDVAEYADDVLVLEHGKLI 224

Length = 287

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNG----CPISRTVMSRIS-GYVAQQD 50
           + PSG GK+T L  LN R+  L     + G + L G     P    V  R   G V QQ 
Sbjct: 37  IGPSGCGKSTYLRTLN-RMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95

Query: 51  FLIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGI-----NHRRQVQISGL 103
                 ++ E++ +  +L    D+      L++ +   ++   I     +H  +  +S L
Sbjct: 96  NPFP-FSIYENVIYGLRLAGVKDKAV----LDEAVETSLKQAAIWDEVKDHLHESALS-L 149

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA--IHQ 161
           SGGQ++R+ +A  L  +P ++  DEPT+ LD  S+  + N+L +L  +  I++    +HQ
Sbjct: 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209

Query: 162 PT 163
            +
Sbjct: 210 AS 211

Length = 252

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 22/173 (12%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV-----QGEILL---NGCPISRTV-----MSRISGYVA 47
           + PSG GK+T L   N R+  L      +GEI+L   N   +S  V       RIS    
Sbjct: 48  IGPSGCGKSTFLRCFN-RMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106

Query: 48  QQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGL 103
           + +   +  ++ E++ +  ++   +R + LE  + +   + N      +  R       L
Sbjct: 107 KPNPFPK--SIFENVAYGLRIRGVKRRSILE--ERVENALRNAALWDEVKDRLGDLAFNL 162

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           SGGQ++RL +A  L T+P+IL  DEPT+ LD  +  ++  L+  L  +  I+I
Sbjct: 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215

Length = 265

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 29/77 (37%), Positives = 47/77 (61%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGG+R+R+ +A+ LLT P++L  DEPTT LD      ++ LL++L  E  + +  I   
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216

Query: 163 TSGVFEKFDTVSLLAHG 179
            S V +  D V+++ +G
Sbjct: 217 LSIVRKLADRVAVMQNG 233

Length = 529

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 59/176 (33%)

Query: 3   PSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
            +GAGK+TLL   A ++K       GE           V     GY+ Q+  L    TV 
Sbjct: 39  LNGAGKSTLLRIMAGVDKEF----NGEARPAP---GIKV-----GYLPQEPQLDPTKTVR 86

Query: 60  EHLQF--------------------------------MAKL--TMDRRTTWLELNKTITR 85
           E+++                                  A+L   +D    W +L++ +  
Sbjct: 87  ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW-DLDRKLEI 145

Query: 86  VMENLGINHRR----QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
            M+ L     R       ++ LSGG+R+R+AL   LL++P +L  DEPT  LD+ S
Sbjct: 146 AMDAL-----RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 41/185 (22%)

Query: 1   MSPSGAGKTTLLAAL--NKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQD-FLIE 54
           M P+G+GK+TL   +  + + + + +GEIL  G  I        +R+  ++A Q    I 
Sbjct: 32  MGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
            +   + L++              +N+                    G SGG++KR  + 
Sbjct: 91  GVKNADFLRY--------------VNE--------------------GFSGGEKKRNEIL 116

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             LL EP +   DEP +GLD  +   V  ++ +L  E + V+   H      + K D V 
Sbjct: 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVH 176

Query: 175 LLAHG 179
           +L  G
Sbjct: 177 VLYDG 181

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 78  ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           E+ K +  V+ ++G+      + + LSGGQ++R+A+A  L  EP+I+  DE T+ LD   
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178

Query: 138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEK--FDTVSLLAHGGLLA 183
              ++ L+++L  ++ + + +I   T  + E    D V +L  G LLA
Sbjct: 179 KEQILKLIRKLKKKNNLTVISI---THDIDEANMADQVLVLDDGKLLA 223

Length = 282

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 37/150 (24%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRIS---GYVAQQDFLIEELTVL 59
            G G+T L  AL   ++    GEI L+G P++ R+    I     YV +           
Sbjct: 35  VGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE----------- 82

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
                      DR+   L L+ ++    EN+ ++         LSGG ++++ LA  L  
Sbjct: 83  -----------DRKREGLVLDLSV---AENIALSSL-------LSGGNQQKVVLARWLAR 121

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           +P++L  DEPT G+D  +   +  L+++LA
Sbjct: 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELA 151

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 36/203 (17%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDF--------LI 53
            SGAGKT+LL AL     GL   G   ++    S  +      Y+ Q             
Sbjct: 427 ESGAGKTSLLRALA----GLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482

Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
            + +  E +  + K+ +      L+      RV                LSGG+++RLA 
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV----------------LSGGEQQRLAF 526

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  LL +P+ +F DE T+ LD  + + +  LLK+       VI   H+PT   F     +
Sbjct: 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNFHS-RQL 584

Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
            LL   G     GQ  K      
Sbjct: 585 ELLDDAG-----GQNLKPPALPT 602

Length = 604

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 19/190 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
           M  SG+GK+T++  LN+ ++   +G++L++G  I+       R V  +    V Q   L+
Sbjct: 60  MGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118

Query: 54  EELTVLEHLQFMAKLT----MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
             +TVL++  F  +L      +RR   L+        +  +G+ +        LSGG R+
Sbjct: 119 PHMTVLDNTAFGMELAGINAEERREKALD-------ALRQVGLENYAHSYPDELSGGMRQ 171

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
           R+ LA  L   P IL  DE  + LD      + + L +L  + +  I  I          
Sbjct: 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231

Query: 170 FDTVSLLAHG 179
            D ++++ +G
Sbjct: 232 GDRIAIMQNG 241

Length = 400

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 22/45 (48%), Positives = 27/45 (60%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
           LSGG++ RLALA  LL  P +L  DEPT  LD  S   +   LK+
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 24/207 (11%)

Query: 3   PSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPI----SRTVMSRIS-GYVAQQ---- 49
           PSG GK+T L   N+    V    V+GE+ ++G  +    +  V+ R   G V Q+    
Sbjct: 39  PSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98

Query: 50  -DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRV--MENLGINHRRQVQISGLSGG 106
              + + +     L  +AK   +++     + K++T V   E LG   R +     LSGG
Sbjct: 99  PKSIYDNVAYGPKLHGLAK---NKKKLDEIVEKSLTSVGLWEELG--DRLKDSAFELSGG 153

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
           Q++RL +A  +  +P +L  DEP + LD  + N + NL+++L  +    I  +       
Sbjct: 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL--KKNFTIIVVTHSMKQA 211

Query: 167 FEKFDTVSLLAHGGLLAYHGQVSKVLK 193
            +  D V+     G +  +    ++ K
Sbjct: 212 KKVSDRVAFF-QSGRIVEYNTTQEIFK 237

Length = 251

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GLSGGQ++RL +A  L  +P+++  DEP + LD  + + + +L+++LA E  +V+
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV 254

Length = 305

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 32/200 (16%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGC------PISRTVMSRISGYVAQQDF 51
           + PSG+GK+TLL      + G      G +L+NG       P  R V       + Q++ 
Sbjct: 30  VGPSGSGKSTLL----NLIAGFETPQSGRVLINGVDVTAAPPADRPVSM-----LFQENN 80

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELN----KTITRVMENLGINHRRQVQISGLSGGQ 107
           L   LTV +++           +  L+L     + I   +  +G+    +     LSGG+
Sbjct: 81  LFAHLTVEQNVGL-------GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGE 133

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGV 166
           R+R+ALA  L+ +  +L  DEP   LD      +++L+  L  E+++ V+   HQP    
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA- 192

Query: 167 FEKFDTVSLLAHGGLLAYHG 186
            ++     +    G +A  G
Sbjct: 193 -KRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 18/142 (12%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
           +G+GK+TL A+L      L +GEI L+G P+S    S +   VA  QQD       V+  
Sbjct: 376 TGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD------PVVLA 428

Query: 62  LQFMAKLTMDRRTT----WLELNK----TITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
             F+A +T+ R  +    W  L       + R + + G+      Q + LS GQ++ LAL
Sbjct: 429 DTFLANVTLGRDISEEQVWQALETVQLAELARSLPD-GLYTPLGEQGNNLSVGQKQLLAL 487

Query: 114 AVQLLTEPQILFCDEPTTGLDS 135
           A  L+  PQIL  DE T  +DS
Sbjct: 488 ARVLVQTPQILILDEATANIDS 509

Length = 592

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 26/76 (34%), Positives = 44/76 (57%)

Query: 85  RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
            V+E LG+ +     +S LSGG+ +R+A+A  LL +  + F DEP++ LD     N   +
Sbjct: 196 EVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255

Query: 145 LKQLACESRIVICAIH 160
           +++LA + + VI   H
Sbjct: 256 IRELAEDGKYVIVVEH 271

Length = 591

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 27/183 (14%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           + P+GAGK+TL+     RV   V G +  +   I R    RI GYV Q+           
Sbjct: 36  LGPNGAGKSTLV-----RV---VLGLVAPDEGVIKRNGKLRI-GYVPQK----------L 76

Query: 61  HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +L     LT++R   +L L      + I   ++ +   H     +  LSGG+ +R+ LA 
Sbjct: 77  YLDTTLPLTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLAR 133

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
            LL  PQ+L  DEPT G+D      + +L+ QL  E    +  +      V  K D V  
Sbjct: 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC 193

Query: 176 LAH 178
           L H
Sbjct: 194 LNH 196

Length = 251

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 27/161 (16%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
           PSGAGK+TL   L  R      G ILL+G  +        R  M+     +  QD ++  
Sbjct: 374 PSGAGKSTLFQLL-LRFYDPQSGRILLDGVDLRQLDPAELRARMA-----LVPQDPVLFA 427

Query: 56  LTVLEHLQF----MAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQ 107
            +V+E++++         ++        ++ I+ + E     LG    R V    LSGGQ
Sbjct: 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG---ERGV---TLSGGQ 481

Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           R+R+A+A  +L +  IL  DE T+ LD+ S   V   L+ L
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           SGGQ +R+ +A  L+ EP+++ CDEP + LD      VVNLL+QL  E
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210

Length = 331

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 22/170 (12%)

Query: 3   PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-----SRTVMSRISGYVAQQDFL 52
           PSG GK+T +  LN+ V+ LV      G+IL     I     S   +    G V Q+   
Sbjct: 58  PSGCGKSTYIKTLNRMVE-LVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116

Query: 53  IEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGG 106
             + ++ +++ +  K+    D++T    L++ + + +    I      R      GLSGG
Sbjct: 117 FPK-SIYDNVTYGPKIHGIKDKKT----LDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           Q++RL +A  L  EP ++  DEPT+ LD  S   V  L+++L  +  I+I
Sbjct: 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221

Length = 271

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 27/174 (15%)

Query: 1   MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           M P+G+GKTT L  LN+   +V G    G++LL G    R++ +    Y    +F     
Sbjct: 53  MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG----RSIFN----YRDVLEFRRRVG 104

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--------------G 102
            + +         MD     +  +K + R  E  G+   R  ++                
Sbjct: 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPR-KEFRGVAQARLTEVGLWDAVKDRLSDSPFR 163

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           LSGGQ++ L LA  L   P++L  DEPT+ LD  +   +   ++ LA    ++I
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVII 217

Length = 276

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 20/171 (11%)

Query: 1   MSPSGAGKTTLLAALNKR---VKGLV-QGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
           + PSG GK+T L  LN+    ++G   +GEI   G       +S +      G V Q+  
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173

Query: 52  LIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSG 105
             E +++ +++ +  +     DR+     L K + + +++  +    +  +    + LSG
Sbjct: 174 PFE-MSIFDNVAYGPRNNGINDRKI----LEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GQ++RL +A  +  EP++L  DEPT+ LD  +   +  L+ +L  +  I+I
Sbjct: 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279

Length = 329

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 4   SGAGKTTLLAALN---KRVKGLVQ-GEILLNGCPISRTV--MSRISGYVAQ--QDFLIEE 55
           +G+GK+TLL  LN   +  +G V  G+I+++     + +  + +  G V Q  +  L EE
Sbjct: 41  TGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALA 114
            TVL+ + F  +   +      +  K     +E +G+     +     LSGGQ +R+A+A
Sbjct: 101 -TVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L  EP++L  DEPT GLD  +   ++ L + +    + V+   H     V +  D V 
Sbjct: 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL-MDDVADYADYVY 215

Query: 175 LLAHGGLLA 183
           LL  G +++
Sbjct: 216 LLEKGHIIS 224

Length = 288

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 31/170 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCP---ISRTVMSRISGYVAQQDFLIEEL 56
            SG+GK+T+     K V GL Q   GEIL +G P   I R V++     V  QD  + E 
Sbjct: 513 GSGSGKSTI----AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMV-DQDIFLFEG 567

Query: 57  TVLEHLQF----MAKLTMDRRTTWLELNKTITR-------VMENLGINHRRQVQISGLSG 105
           TV ++L      +    + R      ++  IT         +   G N         LSG
Sbjct: 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN---------LSG 618

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
           GQR+RL +A  L+  P IL  DE T+ LD  +   + + L++  C   IV
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIV 668

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 34/165 (20%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDF----- 51
           SG+GK+TL  AL + +    QGEI  +G  I        R +  R+   V Q  +     
Sbjct: 322 SGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQ-VVFQDPYGSLSP 378

Query: 52  ------LIEE-LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGL 103
                 +IEE L V E      KL+   R      ++ +   +E +G++   R       
Sbjct: 379 RMTVGQIIEEGLRVHE-----PKLSAAER------DQRVIEALEEVGLDPATRNRYPHEF 427

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           SGGQR+R+A+A  L+ +P+++  DEPT+ LD      V++LL+ L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472

Length = 534

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
             LSGGQR+RL +A  L+ +P+IL  DE T+ LD+ +   V   L++L   +RIVI
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV-TRIVI 641

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 96  RQVQISGLSGGQRKRLALAVQL---LTEPQILFC-DEPTTGLDSYSANNVVNLLKQLACE 151
                  LSGG+++  ALA+ L     +P+ L+  DE   GLD      +   + +   +
Sbjct: 71  LIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130

Query: 152 SRIVICAIHQP 162
              VI   H P
Sbjct: 131 GAQVIVITHLP 141

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 39/219 (17%)

Query: 4   SGAGKTTLLAALNKRVKG-------LVQGEILLNGCPISR---TVMSRISGYVAQQD--- 50
           +GAGK+TLL AL   + G        V G++ LNG P++      ++R+   + Q     
Sbjct: 36  NGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95

Query: 51  --FLIEELTVL---EHLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
             F   E+ +L    H +    LT  D    W        + +   G        ++ LS
Sbjct: 96  FAFSAREIVLLGRYPHARRAGALTHRDGEIAW--------QALALAGATALVGRDVTTLS 147

Query: 105 GGQRKRLALA---VQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
           GG+  R+  A    QL         P+ L  DEPT  LD    + +++ +++LA +  + 
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207

Query: 156 ICAI-HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193
           + AI H P        D +++LA G ++A HG  + VL 
Sbjct: 208 VLAIVHDPNLAA-RHADRIAMLADGAIVA-HGAPADVLT 244

Length = 272

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 1   MSPSGAGKTTLLAALNK-----RVKGLVQ---GEILLNGCP---ISRTVMSRISGYVAQQ 49
           M  SG+GK+TLL A+N      R   LV+   G + +  C    + R    R+S  V QQ
Sbjct: 56  MGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVS-MVFQQ 114

Query: 50  DFLIEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
             L+   TV E++ F  ++  M +     E  K +   +E +G+      +   LSGG +
Sbjct: 115 FALLPWRTVEENVAFGLEMQGMPKA----ERRKRVDEQLELVGLAQWADRKPGELSGGMQ 170

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
           +R+ LA    TE  IL  DEP + LD
Sbjct: 171 QRVGLARAFATEAPILLMDEPFSALD 196

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 43/210 (20%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS--GYVA--QQDFLIEE 55
           P+GAGKTT+   L     G  +   G ILL G  I      +I+  G V   Q   L  E
Sbjct: 39  PNGAGKTTVFNCLT----GFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94

Query: 56  LTVLE--------HLQ--FMAKL------------TMDRRTTWLELNKTITRVMENLGIN 93
           +TV+E         L+    + L             +DR  TWLE        +  L   
Sbjct: 95  MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE-------RVGLLEHA 147

Query: 94  HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
           +R   Q   L+ GQ++RL +A  ++T+P+IL  DEP  GL+      +  L+ +L  E  
Sbjct: 148 NR---QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN 204

Query: 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLA 183
           + +  I      V    D + ++  G  LA
Sbjct: 205 VTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234

Length = 255

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 21/160 (13%)

Query: 4   SGAGKTTLLAALNK------RVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIE 54
           SG GK+T L   N+      ++ GLV+    + G  +       + +  G V QQ  +  
Sbjct: 37  SGCGKSTFLRCFNRMNDKIAKIDGLVE----IEGKDVKNQDVVALRKNVGMVFQQPNVFV 92

Query: 55  ELTVLEHLQFMAKL-TMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRK 109
           + ++ E++ +  KL  M +     E    +   ++ +G    +  + +     LSGGQ++
Sbjct: 93  K-SIYENISYAPKLHGMIKNKD--EEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           RL +A  L  +P++L  DEPT+ LD  S+  +  LLK+L+
Sbjct: 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189

Length = 246

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 38/177 (21%)

Query: 3   PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRT------VMSRISGYVAQQDF 51
           PSG GK+T+L +LN R+  L+     +G +L +G  +         V  RI G V QQ  
Sbjct: 47  PSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI-GMVFQQPN 104

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----------S 101
              + ++ E++ F A++               T  M+ L     R+  +          S
Sbjct: 105 PFPK-SIYENIAFGARIN------------GYTGDMDELVERSLRKAAVWDECKDKLNES 151

Query: 102 G--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           G  LSGGQ++RL +A  +  EP+++  DEP + LD  S   +   + +L     IVI
Sbjct: 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208

Length = 269

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 25/194 (12%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--------RTVMSRISGYVAQ----QDF 51
           +G+GK+TL+  +N  +K    G + ++   I+        R V  RI G V Q    Q F
Sbjct: 42  TGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKDKYIRPVRKRI-GMVFQFPESQLF 99

Query: 52  LIEELTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQR 108
              E TV   + F  K   M+      E+     R++ +LG + R  +  S   +SGGQ 
Sbjct: 100 ---EDTVEREIIFGPKNFKMNLD----EVKNYAHRLLMDLGFS-RDVMSQSPFQMSGGQM 151

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
           +++A+   L   P I+  DEPT GLD  S   V+ LLK L  +    I  +    + V  
Sbjct: 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR 211

Query: 169 KFDTVSLLAHGGLL 182
             D V ++  G ++
Sbjct: 212 YADEVIVMKEGSIV 225

Length = 286

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGGQ +R+A+A  L  EP+IL  DEPT GLD      ++ L K+L  +S + I  +   
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHL 204

Query: 163 TSGVFEKFDTVSLLAHGGLL 182
              V    D V +L  G L+
Sbjct: 205 MDDVANYADFVYVLEKGKLV 224

Length = 280

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
           + PSG GK+T L  LN+    +    + GEI   G  I  + M  +      G V QQ  
Sbjct: 36  IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95

Query: 52  LIEELTVLEHLQFMAKLT-------MDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
                +V +++ +  K+        +D+R   +E +     + +    N  R  Q    S
Sbjct: 96  PFP-FSVYDNVAYGLKIAGVKDKELIDQR---VEESLKQAAIWKETKDNLDRNAQ--AFS 149

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
           GGQ++R+ +A  L   P+++  DEPT+ LD  S++ +   L +L  +   ++   +   +
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA 209

Query: 165 GVFEKFDTVSLLAHGGLLAY 184
           G     D  + L +G L+  
Sbjct: 210 GRIS--DQTAFLMNGDLIEA 227

Length = 251

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAI 159
              SGG ++RL +A  L+T P+++F DEPT GLD      +++LL+ L  +  + VI   
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206

Query: 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQV 188
           H              LLA   L+   G+V
Sbjct: 207 HD--------LGVARLLAQRLLVMQQGRV 227

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 62/189 (32%)

Query: 3   PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-----------SRTVM------- 39
           PSG GK+T+L   N R+  L     V+G++  +G  +            R  M       
Sbjct: 44  PSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102

Query: 40  ------------SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVM 87
                       +RI+GY    D L+E              ++ +   W E       V 
Sbjct: 103 FPKSIYDNIAYGARINGYKGDMDELVER-------------SLRQAALWDE-------VK 142

Query: 88  ENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
           + L     +Q  +S LSGGQ++RL +A  +  +P+++  DEP + LD  S   +  L+ +
Sbjct: 143 DKL-----KQSGLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196

Query: 148 LACESRIVI 156
           L  +  I+I
Sbjct: 197 LKEQYTIII 205

Length = 264

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 22/172 (12%)

Query: 1   MSPSGAGKTTLLAALNK--------RVKGLVQGEILLNGCPISRTV----MSRISGYVAQ 48
           + PSG GK+T L  LN+        RV+G V+     N     R V    + R    V  
Sbjct: 39  IGPSGCGKSTFLKCLNRMNELESEVRVEGRVE---FFNQNIYERRVNLNRLRRQVSMVHP 95

Query: 49  QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLS 104
           +  L   ++V +++ +  K+   R    LE++  +   +++      I H+       LS
Sbjct: 96  KPNLFP-MSVYDNVAYGVKIVGWRPK--LEIDDIVESALKDADLWDEIKHKIHKSALDLS 152

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  L  +P++L  DEP  GLD  ++  V +L++ L   S + +
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204

Length = 261

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 34/176 (19%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVLE 60
           +G+GK+TLL  L  R +   +GEILL+  P+   S    +R   Y+ QQ    E +TV E
Sbjct: 46  NGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ---------------ISGLSG 105
                  L    R  W   +  + R     G   R +V+               +  LSG
Sbjct: 105 -------LVAIGRYPW---HGALGR----FGAADREKVEEAISLVGLKPLAHRLVDSLSG 150

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
           G+R+R  +A+ +  + + L  DEPT+ LD     +V+ L+ +L+ E  + VI  +H
Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206

Length = 265

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 23/82 (28%), Positives = 50/82 (60%)

Query: 78  ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           E+++ ++  ++ + +  R   + + LSGGQ++R+A+A  L   P ++  DE T+ LD  +
Sbjct: 118 EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177

Query: 138 ANNVVNLLKQLACESRIVICAI 159
             N+++L++++  E  I I +I
Sbjct: 178 RQNLLDLVRKVKSEHNITIISI 199

Length = 269

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 6/118 (5%)

Query: 25   GEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNK 81
            G+ILL+G   C  +   +  +   V+Q+  L   +++ E+++F  +              
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFA 1335

Query: 82   TITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
             I   +E+L   +   V   G  LSGGQ++R+A+A  LL EP+IL  DE T+ LDS S
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393

Length = 1466

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 28/159 (17%)

Query: 4   SGAGKTTL---LAALNKRVKGLVQGEI------LLNGCPISRTVMSRISGYVAQQDFLIE 54
           SGAGKTTL   +A + +   G V   +      +    P  R    R  G + Q+  L  
Sbjct: 319 SGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITR-----VMENLGINHRRQVQI-----SGLS 104
             TVL++L              LEL   + R      ++ +G +  +  +I       LS
Sbjct: 379 HRTVLDNLT---------EAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143
            G+R R+ALA  L+ EP+I+  DEPT  +D  +  +V +
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 26/172 (15%)

Query: 3   PSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTV-----MSRISGYVAQQ---- 49
           PSG+GK+T L +LN+    +    V G+IL  G  I+R       M +  G V Q+    
Sbjct: 54  PSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113

Query: 50  -DFLIEELT-VLEHLQFMAKLTMDRRT-TWLELNKTITRVMENLGINHRRQVQISGL--S 104
              + E +T  LE      K  +D    T L+      +V ++L          S L  S
Sbjct: 114 AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH--------KSALTLS 165

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GGQ++RL +A  +  +P IL  DEP + LD  S   +   + +L     I+I
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217

Length = 267

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQ-DFLIE 54
           P+GAGK+TLL  LN    G+    +G + + G  ++    + V S++ G V Q  D  + 
Sbjct: 39  PNGAGKSTLLLHLN----GIYLPQRGRVKVMGREVNAENEKWVRSKV-GLVFQDPDDQVF 93

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
             TV + + F   + M       E+ + +   ++ + +   R      LS GQ+KR+A+A
Sbjct: 94  SSTVWDDVAF-GPVNMGLDKD--EVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA 150

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L  +P ++  DEP   LD      ++ +L +L  + + VI A H       E  D V 
Sbjct: 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD-VDLAAEWADQVI 209

Query: 175 LLAHGGLLAYHG 186
           +L  G +LA   
Sbjct: 210 VLKEGRVLAEGD 221

Length = 274

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
            SGAGKTTLL  +    KG  + +   +   +     +  +    + +    E+T+LEHL
Sbjct: 417 QSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTE 120
                 T D              ++   G++     + + S LS GQ++R  LA  L   
Sbjct: 477 ---RSKTGDLNAA--------VEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAER 525

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAHG 179
           P +L  DE    LD  +A  V   + +LA E+ I +I   H+P  G   + DT+ L+ +G
Sbjct: 526 PNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585

Query: 180 G 180
            
Sbjct: 586 K 586

Length = 593

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTVLE 60
           P+GAGKTTL+  L +RV     G+IL++G  I+      +   +A   QD  +   ++ E
Sbjct: 369 PTGAGKTTLINLL-QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLL 118
           +++   +   D               +      +   V   G  LSGG+R+RLA+A  +L
Sbjct: 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487

Query: 119 TEPQILFCDEPTTGLD 134
               IL  DE T+ LD
Sbjct: 488 KNAPILVLDEATSALD 503

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 86  VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
           V+E LG+ +     IS LSGG+ +R+A+A  LL +    F DEPT+ LD     NV  L+
Sbjct: 196 VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255

Query: 146 KQLACESRIVI 156
           ++LA E + V+
Sbjct: 256 RELA-EGKYVL 265

Length = 590

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           LSGGQ++RL +A  L  +P+I+  DEPT+ LD  S   + +L+  L  +  IVI
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208

Length = 258

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
           SGG ++RL +A  L+T P+++F DEPT GLD      +++LL+ L  E       +    
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-------LGLAV 205

Query: 164 SGVFEKFDTVSLLAHGGLLAYHGQVS 189
             V        LLA   ++   GQV 
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQVV 231

Length = 258

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 61/177 (34%)

Query: 3   PSGAGKTTLL---AALNKRVKGLVQGE-ILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
            +GAGK+TLL   A ++K      +GE     G  +         GY+ Q+  L  E TV
Sbjct: 41  LNGAGKSTLLRIMAGVDKEF----EGEARPAPGIKV---------GYLPQEPQLDPEKTV 87

Query: 59  LEHLQ------------F--------------------MAKL--TMDRRTTWLELNKTIT 84
            E+++            F                      +L   +D    W +L+  + 
Sbjct: 88  RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW-DLDSQLE 146

Query: 85  RVMENLGINHRR----QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
             M+ L     R      +++ LSGG+R+R+AL   LL +P +L  DEPT  LD+ S
Sbjct: 147 IAMDAL-----RCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 29/146 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
           PSG GKTT+L    + V GL    +G+I ++G  ++ R++  R    V Q   L   +++
Sbjct: 40  PSGCGKTTVL----RLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95

Query: 59  LEHLQF---MAKLTMDRRTTWLELNKTITRVMENL------GINHRRQVQISGLSGGQRK 109
            E++ +   M  +  + R           RV E L      G   R   QI   SGGQ++
Sbjct: 96  GENVGYGLKMLGVPKEERK---------QRVKEALELVDLAGFEDRYVDQI---SGGQQQ 143

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDS 135
           R+ALA  L+ +P++L  DEP + LD+
Sbjct: 144 RVALARALILKPKVLLFDEPLSNLDA 169

Length = 351

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           SGGQR+R+A+A  L+ +P ++  DEP + LD      V+NL+  L
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200

Length = 327

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 63/195 (32%)

Query: 1   MSPSGAGKTTLLAALNKRVKGL-----VQGEIL----------LNGCPISRTV------- 38
           + PSG GK+TLL   N R+  L     V+G +L          +N   + R V       
Sbjct: 52  IGPSGCGKSTLLRCFN-RMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110

Query: 39  -------------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITR 85
                          R +GY    D L+E+             ++ R   W E       
Sbjct: 111 NPFPKSIYENIAFAPRANGYKGNLDELVED-------------SLRRAAIWEE------- 150

Query: 86  VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
                 +  + + + + LSGGQ++RL +A  +  +P +L  DEP + LD  S   V  L 
Sbjct: 151 ------VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC 204

Query: 146 KQLACESRIVICAIH 160
            +L  E   +I   H
Sbjct: 205 LELK-EQYTIIMVTH 218

Length = 274

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 97  QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           + QI  LSGG ++++ +   LLT+P+IL  DEPT G+D  +   +  L+ +LA + + +I
Sbjct: 386 RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445

Length = 491

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGG+++RLA A  LL +P+ +F DE T+ LD  S + +  LLK+L      VI   H+P
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI---TVISVGHRP 148

Query: 163 T 163
           +
Sbjct: 149 S 149

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           SGG ++RL +A  L+T P+++F DEPT GLD
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           LSGGQ +R+A+A  L  EP++L  DEPT GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177

Length = 290

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR------TVMSRISGYVAQQDFLIE 54
           SGAGK+TLL    K + G+ +   G+I  +G  I+R        + R  G + Q   L+ 
Sbjct: 37  SGAGKSTLL----KLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92

Query: 55  ELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           + TV +++     +A  + D      ++ + ++  ++ +G+  + +     LSGG+++R+
Sbjct: 93  DRTVYDNVAIPLIIAGASGD------DIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV 146

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            +A  ++ +P +L  DEPT  LD   +  ++ L ++       V+ A H
Sbjct: 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS---YSANNVVNLLKQLACESRIVIC 157
           S LSGGQ++R+++A  ++  P+IL  DE T+ LD+   Y     +N LK    E+RI I 
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK--GNENRITII 635

Query: 158 AIHQ 161
             H+
Sbjct: 636 IAHR 639

Length = 1466

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
           LSGGQ++R+A+A  L   P+ +  DEPT  LD      VVN +K+L  +  I I  I
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201

Length = 280

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 46/159 (28%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFL-------- 52
           SG+GK+T+ A L  R   + +GEILL+G  +    ++ +   VA   Q   L        
Sbjct: 378 SGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436

Query: 53  -------------IEELTVLEH-LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV 98
                        IEE   + + + F+ K+           N   T + EN G+      
Sbjct: 437 IAYARTEQYSREQIEEAARMAYAMDFINKMD----------NGLDTVIGEN-GVL----- 480

Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
               LSGGQR+R+A+A  LL +  IL  DE T+ LD+ S
Sbjct: 481 ----LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515

Length = 582

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +GLSGGQ++RL +A  +   P+++  DEP + LD  +   V  L+ +L     IVI
Sbjct: 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217

Length = 267

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
           SGG R+R+ +A+ LL  P++L  DEPTT LD      ++ LL +L  E    I  I
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218

Length = 330

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 12/184 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLE 60
           PSG+GK+T+ AAL + +     G++LL+G P+ +     +   VA   Q+ ++   +V E
Sbjct: 515 PSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573

Query: 61  HLQF-MAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           ++ + +     +      +       +ME   G +     + S LSGGQ++R+A+A  L+
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ-PTSGVFEKFDTVSLLA 177
            +P++L  DE T+ LD+     +     +    SR V+   H+  T    E+ D + +L 
Sbjct: 634 RKPRVLILDEATSALDAECEQLLQESRSR---ASRTVLLIAHRLST---VERADQILVLK 687

Query: 178 HGGL 181
            G +
Sbjct: 688 KGSV 691

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVA---QQDFLIEE 55
           +G G++ L+ A++  ++    G ILLNG  +    +   R      YV        L+ +
Sbjct: 293 AGNGQSELVEAISG-LRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351

Query: 56  LTVLEHL----QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKR 110
           L++ E+L          +         + K    ++E   +           LSGG +++
Sbjct: 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           L LA +L   P +L   +PT GLD  +   +   L +L 
Sbjct: 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450

Length = 501

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 34/177 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTV 58
           P+G+GK+TLL+ L +R   + +G+I  +  P+++  +    SR++  V+Q  FL  + TV
Sbjct: 349 PTGSGKSTLLS-LIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA-VVSQTPFLFSD-TV 405

Query: 59  L------------EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LS 104
                        + ++ +A+L          ++  I R+ +     +  +V   G  LS
Sbjct: 406 ANNIALGRPDATQQEIEHVARLA--------SVHDDILRLPQG----YDTEVGERGVMLS 453

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           GGQ++R+++A  LL   +IL  D+  + +D  + + +++ L+Q   E R VI + H+
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHR 509

Length = 569

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 68  LTMDRRTTWLEL---NKTITRVMENLGI--NHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
           LT +RR  W++    N  + R    L I  NH  Q     LSGG ++++ +A  L   PQ
Sbjct: 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-AARTLSGGNQQKVLIAKCLEASPQ 423

Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLA 149
           +L  DEPT G+D  + N++  L++ +A
Sbjct: 424 LLIVDEPTRGVDVSARNDIYQLIRSIA 450

Length = 510

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 25/137 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEEL-TV 58
           P+G GKTT +  L   +K    G+I +    +S   + + +   G V  +D L       
Sbjct: 33  PNGIGKTTFIKMLAGVLKPDE-GDIEIELDTVSYKPQYIKADYEGTV--RDLLSSITKDF 89

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
             H  F                   T + + L I      ++  LSGG+ +R+A+A  L 
Sbjct: 90  YTHPYF------------------KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS 131

Query: 119 TEPQILFCDEPTTGLDS 135
            +  I   DEP+  LD 
Sbjct: 132 KDADIYLLDEPSAYLDV 148

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 35/152 (23%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFL----IEE 55
           P+GAGK+TL+  L +RV     G IL++G     ++R  + R    V Q   L    IE+
Sbjct: 369 PTGAGKSTLINLL-QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427

Query: 56  -LTV------LEHLQFMAKLT-----MDRRTTWLELNKTITRVMENLGINHRRQVQISGL 103
            + V       E ++  A+       ++R+    +     T V E          +   L
Sbjct: 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD-----TVVGE----------RGRQL 472

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
           SGG+R+RLA+A  LL +P IL  DE T+ LD 
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDV 504

Length = 588

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 49  QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
              L   L++L    F+     + R   L+L   + R+     +    ++ I G+S G +
Sbjct: 136 LASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTK 195

Query: 109 KRLALAVQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
           + LAL + LL+   +  +L  DEP  GL       +V LLK+L+ +   +I   H P 
Sbjct: 196 RLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253

Length = 256

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 23/195 (11%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
           GAGK+TLL    K + G+ +   G++ + G         +++  +        ELT  E+
Sbjct: 63  GAGKSTLL----KLIAGIYKPTSGKVKVTG---------KVAPLIELGAGFDPELTGREN 109

Query: 62  LQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           +      L + R+    E+++ +  ++E   +       +   S G   RLA +V    E
Sbjct: 110 IYLRGLILGLTRK----EIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVE 165

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P IL  DE     D+      +  L +L  +++ ++   H     + +  D    L HG 
Sbjct: 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224

Query: 181 LLAYHGQVSKVLKHF 195
           +    G   +V+  +
Sbjct: 225 IRME-GSPEEVIPAY 238

Length = 249

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 77  LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY 136
           +E+ K + R +  +G+   R      LSGGQ + +ALA  L  EP+ L  DE T+ LD  
Sbjct: 111 IEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170

Query: 137 SANNVVNLLKQLACESRIVICAIH 160
           S   V+  +K+L  + + ++   H
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITH 194

Length = 274

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 19/160 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
             G GK++LL+AL   +   V+G + + G             YV QQ + I+  ++ E++
Sbjct: 672 QVGCGKSSLLSALLAEMDK-VEGHVHMKGS----------VAYVPQQAW-IQNDSLRENI 719

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLTE 120
            F   L        LE    +   +E L    R ++   G  LSGGQ++R++LA  + + 
Sbjct: 720 LFGKALNEKYYQQVLEACALLPD-LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778

Query: 121 PQILFCDEPTTGLDSYSA----NNVVNLLKQLACESRIVI 156
             I   D+P + +D++       +V+     L  ++RI++
Sbjct: 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV 818

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQ 161
           LSGGQ++R+A+A  L   P+I+  DE T+ LD      +  ++  L     + +I   H 
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202

Query: 162 PTSGVFEKFDTVSLLAHGGLLA 183
               +    D V + + G L+A
Sbjct: 203 MDEAI--LADKVIVFSEGKLIA 222

Length = 271

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 5   GAGKTTLLAALNKRVK-GLVQGEILLNGCP-----ISRTVMSRISGYVAQQDFLIEELTV 58
           GAGK+TL+  L+     G  +GEI+  G       I  T  + I+  + Q+  L++EL+V
Sbjct: 41  GAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA-IIHQELALVKELSV 99

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           LE++    ++T      +  +     +++  L ++      +  L  GQ++ + +A  L 
Sbjct: 100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA-IHQPTSGVFEKFDTVSLLA 177
            + ++L  DEPT  L       ++++++ L  ++  + C  I    + V    DT+ ++ 
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDL--KAHGIACIYISHKLNEVKAISDTICVIR 217

Query: 178 HG 179
            G
Sbjct: 218 DG 219

Length = 506

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 31/138 (22%)

Query: 3   PSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ---QDFLIEEL 56
           P+G GKTT   LLA + K  +G V  E+             +IS Y  Q    D+   + 
Sbjct: 373 PNGIGKTTFAKLLAGVLKPDEGEVDPEL-------------KIS-YKPQYIKPDY---DG 415

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV +    +  +T D  +++ +     + +++ L +       +  LSGG+ +R+A+A  
Sbjct: 416 TVED---LLRSITDDLGSSYYK-----SEIIKPLQLERLLDKNVKDLSGGELQRVAIAAC 467

Query: 117 LLTEPQILFCDEPTTGLD 134
           L  +  +   DEP+  LD
Sbjct: 468 LSRDADLYLLDEPSAHLD 485

Length = 590

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 32/171 (18%)

Query: 5   GAGKTTLLAALNKRVKGLV---QGEILLNGCPIS-RTV--MSRISGYVAQQ-DFLIEELT 57
           G+GK+TL   LN    GL+    G I + G  +S  TV  + R  G V Q  D      T
Sbjct: 43  GSGKSTLAKLLN----GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98

Query: 58  VLEHLQF------MAKLTMDRRTTWLELNKTITRV-MENLGIN--HRRQVQISGLSGGQR 108
           V + + F      + +  M  R         + +V ME+      HR       LSGGQ+
Sbjct: 99  VQDDVAFGLENIGVPREEMVERVDQ-----ALRQVGMEDFLNREPHR-------LSGGQK 146

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
           +R+A+A  L  +P I+  DE T+ LD      V+  ++QL  +  I + +I
Sbjct: 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197

Length = 279

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 24/161 (14%)

Query: 3   PSGAGKTTLLAAL--NKRVKG---LV--QGEI--LLNGCPISRTVMS---RISGYVAQQD 50
           PSG+GK+TLL +L  N        LV  +GE   L+   P  R V+       GYV+Q  
Sbjct: 45  PSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP--REVLEVRRTTIGYVSQ-- 100

Query: 51  FL--IEELTVLEHL-QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGG 106
           FL  I  ++ L+ + + +    + R     +    +TR    L +  R   +  +  SGG
Sbjct: 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTR----LNLPERLWSLAPATFSGG 156

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
           +++R+ +A   + +  IL  DEPT  LD+ +   VV L+++
Sbjct: 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197

Length = 235

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 4    SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLE 60
            +GAGK+++L AL + V+ L +G I+++ C +++   T + R+   + Q   L        
Sbjct: 1271 TGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329

Query: 61   HLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQL 117
               F      D    W  L +  I  V++        +V   G   S GQR+ L+LA  L
Sbjct: 1330 IDPFSEHNDAD---LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386

Query: 118  LTEPQILFCDEPTTGLD 134
            L   +IL  DE T  +D
Sbjct: 1387 LRRSKILVLDEATASVD 1403

Length = 1495

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGGQ++R+ALA  +  +   L  DEPT GLD     + +NL ++L  E +  I  +   
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210

Query: 163 TSGVFEKFDTVSLLAHGGLL 182
              V    D V ++  G ++
Sbjct: 211 MDQVLRIADEVIVMHEGKVI 230

Length = 289

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 35/143 (24%)

Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
           + P+G GKTT   LLA + K  +G  +                ++S Y  Q      + T
Sbjct: 373 LGPNGIGKTTFVKLLAGVIKPDEGSEED--------------LKVS-YKPQYISPDYDGT 417

Query: 58  VLEHLQFMAKLTMDRRTT---WLELNK--TITRVMENLGINHRRQVQISGLSGGQRKRLA 112
           V      +         +     E+ K   +  ++E           +  LSGG+ +R+A
Sbjct: 418 VE---DLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER---------PVDELSGGELQRVA 465

Query: 113 LAVQLLTEPQILFCDEPTTGLDS 135
           +A  L  E  +   DEP+  LD 
Sbjct: 466 IAAALSREADLYLLDEPSAYLDV 488

Length = 591

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)

Query: 3   PSGAGKTTLLAAL-------NKRVKGLVQGEIL-LNGCPISRTVMSRIS--GYVAQQDFL 52
           PSGAGK+TLL +L       + R+    +G  + L        +  R    GYV+Q  FL
Sbjct: 42  PSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ--FL 99

Query: 53  --IEELTVLEHL-QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQR 108
             I  ++ LE + + + +  + R        + + R    L I  R   +  +  SGG++
Sbjct: 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLAR----LNIPERLWHLPPATFSGGEQ 155

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           +R+ +A   + +  IL  DEPT  LD+ +   VV L+ +       +I   H  
Sbjct: 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 96  RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
            +  I  LSGG ++++A+A  L+T P++L  DEPT G+D
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427

Length = 501

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 48/144 (33%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRI-SGY------VA 47
           G+GK+TL   L     GL Q   GEILL+G P+S       R + S + S Y      + 
Sbjct: 359 GSGKSTLAMLLT----GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414

Query: 48  QQDFLIEELTV--LEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
            +     +L    L+ L+   K +  D R + L+                        LS
Sbjct: 415 PEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLK------------------------LS 450

Query: 105 GGQRKRLALAVQLLTEPQILFCDE 128
            GQ+KRLAL + LL E  IL  DE
Sbjct: 451 TGQKKRLALLLALLEERDILVLDE 474

Length = 546

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 38/170 (22%), Positives = 84/170 (49%), Gaps = 19/170 (11%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-----GYVAQQDFLIEEL 56
           GAGK+TL+  L+    G+ +   G I +N    ++ +  +++     G + Q+  +I+EL
Sbjct: 41  GAGKSTLMKVLS----GIHEPTKGTITINNINYNK-LDHKLAAQLGIGIIYQELSVIDEL 95

Query: 57  TVLEHLQFMAKLTMDRR-----TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           TVLE+L ++ +    +        W E+      ++  +G+      +++ LS   ++ L
Sbjct: 96  TVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            +A  L+ + +++  DEPT+ L +   + +  ++ QL  E   ++   H+
Sbjct: 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204

Length = 510

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 26/169 (15%)

Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
           +G GK++LL    + + G++Q   G I    C I+  +      Y+     L  E+TV E
Sbjct: 35  NGCGKSSLL----RMIAGIMQPSSGNIYYKNCNINN-IAKPYCTYIGHNLGLKLEMTVFE 89

Query: 61  HLQFMAKL-----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +L+F +++     T+     + +L+  +               +   LS G +K +A+A 
Sbjct: 90  NLKFWSEIYNSAETLYAAIHYFKLHDLLDE-------------KCYSLSSGMQKIVAIAR 136

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
            +  +  +   DE  T L   + + + NL+   A    IV+ + H  +S
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185

Length = 195

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 22/172 (12%)

Query: 5   GAGKTTLLAAL---NKRVKGLVQGEILLNGCPISRTVMSRISG---YVAQQDFLIEELTV 58
           G GK++LL A+    + ++G V         P      SR      Y AQ+ +L+   TV
Sbjct: 37  GCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA-TV 95

Query: 59  LEHLQFMAKLTMDRRTTWLE---LNKTITRVMENLGINHRRQVQIS----GLSGGQRKRL 111
            E++ F +     R     +   L   I        +    Q +I      LSGGQR+R+
Sbjct: 96  EENITFGSPFNKQRYKAVTDACSLQPDIDL------LPFGDQTEIGERGINLSGGQRQRI 149

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIHQ 161
            +A  L     I+F D+P + LD + +++++   +LK L  + R ++   H+
Sbjct: 150 CVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           LSGG R+R+ +A+ L   P +L  DEPTT LD      ++ L+K L  E
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217

Length = 623

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           LS G+R+ + +A  L    ++L  DEPT  L       +  ++++L 
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 5   GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
           GAGK+TLL    + + G+     G +         TV  R+S  +        ELT  E+
Sbjct: 58  GAGKSTLL----RLLAGIYPPDSGTV---------TVRGRVSSLLGLGGGFNPELTGREN 104

Query: 62  LQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
           +    +L  + R+    E+++ I  ++E   +     + +   S G + RLA A+    E
Sbjct: 105 IYLNGRLLGLSRK----EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE 160

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
           P IL  DE     D+         L++L  + + VI   H P+S   ++    +L+   G
Sbjct: 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS--IKRLCDRALVLEKG 218

Query: 181 LLAYHG 186
            + + G
Sbjct: 219 KIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           LSGG+++R+A+A  +L  P IL  DE T+ LD+++   +   L++++
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446

Length = 497

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 38/167 (22%)

Query: 4   SGAGKT-TLLAALNKRVKGL--VQGEILLNGCPIS------RTVMSRISGYVAQQDFLIE 54
           SG+GK+ T  AAL     G+    G +LL+G P++      R +                
Sbjct: 38  SGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA--------------- 82

Query: 55  ELTVLEHLQ--FMAKLTMDR--RTTWLELNK-----TITRVMENLGINHRRQVQIS---G 102
             T++++ +  F    TM    R T L L K     T+T  +E +G+ +  +V       
Sbjct: 83  --TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFE 140

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
           +SGG  +R+ +A+ LL E   +  DEPTT LD  +   +++LL+ + 
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187

Length = 254

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 85  RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
           + +  +G+  R     + LSGGQ++R+ALA  L+  P +L  DEP   LD+
Sbjct: 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166

Length = 257

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 5   GAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQ--DFLIEELTVLEH 61
           GAGK+TL+  L   +  +  GEI L  G  +         GY AQ   +FL  + + L+H
Sbjct: 348 GAGKSTLIKLLAGELAPV-SGEIGLAKGIKL---------GYFAQHQLEFLRADESPLQH 397

Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQLLTE 120
           L  +A           EL + +   +   G    +  + +   SGG++ RL LA+ +   
Sbjct: 398 LARLAPQ---------ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448

Query: 121 PQILFCDEPTTGLD 134
           P +L  DEPT  LD
Sbjct: 449 PNLLLLDEPTNHLD 462

Length = 638

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 48/150 (32%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TL     + + G  Q   G I      I  TV  ++  YV Q           
Sbjct: 356 PNGAGKSTLF----RMITGQEQPDSGTI-----KIGETV--KL-AYVDQSR--------- 394

Query: 60  EHLQFMAKLTMDRRTTWLEL---NKTITRVMENLGINHR------------RQVQISGLS 104
           + L          +T W E+      I   +    +  R            +Q ++  LS
Sbjct: 395 DALD-------PNKTVWEEISGGLDIIQ--LGKREVPSRAYVGRFNFKGSDQQKKVGQLS 445

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           GG+R R+ LA  L +   +L  DEPT  LD
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 37/57 (64%)

Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           I+ LSGG ++++ ++  L   P+++  DEPT G+D  +   +  +++QLA + ++++
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463

Length = 510

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           SGG R R+ALA  L  EP +L  DEPT  LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376

Length = 718

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQ--QD---FLIEE 55
           +G+GK+TL     K + G+++   GEIL+N  P+     S  S  +    QD    L   
Sbjct: 48  NGSGKSTLA----KMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI--NHRRQVQISGLSGGQRKRLAL 113
           L + + L F  +L  D      +  K I   +  +G+  +H        L+ GQ++R+AL
Sbjct: 104 LRIGQILDFPLRLNTDLEPE--QRRKQIFETLRMVGLLPDHA-NYYPHMLAPGQKQRVAL 160

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  L+  P+I+  DE    LD    + ++NL+ +L  +  I    + Q    +    D V
Sbjct: 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQV 220

Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
            L+ H G +   G  + VL  
Sbjct: 221 -LVMHEGEVVERGSTADVLAS 240

Length = 267

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           LSGG  +R+ +A+ +   P++L  DEPTT LD      ++ LL +L  +  + +  I   
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 163 TSGVFEKFDTVSLLAHGGLLAYHGQV 188
            + V E        AH  ++ Y GQV
Sbjct: 214 LALVAEA-------AHKIIVMYAGQV 232

Length = 326

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 100 ISGLSGGQRKRLALAVQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +S LSGG+ +RL LA +LL    +P +   DEPTTGL ++    ++ +L+ L  +   V+
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866

Query: 157 CAIH 160
              H
Sbjct: 867 IIEH 870

Length = 1809

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 4   SGAGKTTLLAALNK-RVKGLVQGEILLNGCP-----ISRTVMSRISGYVAQQDFLIEELT 57
           +GAGK+TL+  L+     G   GEI  +G P     I  T  + I   + Q+  L+ EL+
Sbjct: 36  NGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV-IIHQELTLVPELS 94

Query: 58  VLEHLQFMAKLTMD-RRTTWLELNKTITRVMENLGI---NHRRQVQISGLSGGQRKRLAL 113
           V E++    ++T+   R  +  +      ++  L +   N  R V      GGQ++ + +
Sbjct: 95  VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--GDYGGGQQQLVEI 152

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           A  L  + ++L  DEP++ L       ++++++ L
Sbjct: 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 28/140 (20%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTVL 59
           +GAGK+TL+ AL + ++   +G+I ++G  IS      + S ++  +  QD  +   T+ 
Sbjct: 43  TGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLT--IIPQDPTLFSGTI- 98

Query: 60  EHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
                  +  +D     +  E+   + RV E  G+N         LS GQR+ L LA  L
Sbjct: 99  -------RSNLDPFDEYSDEEIYGAL-RVSEG-GLN---------LSQGQRQLLCLARAL 140

Query: 118 LTEPQILFCDEPTTGLDSYS 137
           L  P++L  DE T  +D  +
Sbjct: 141 LKRPRVLVLDEATASIDYAT 160

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 88  ENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
           +  GI     RR   +S  +G  RK L L   L++EP +L  DEP  GLD  S   +  L
Sbjct: 121 QQFGITALLDRRFKYLS--TGETRKTL-LCQALMSEPDLLILDEPFDGLDVASRQQLAEL 177

Query: 145 LKQLA 149
           L  L 
Sbjct: 178 LASLH 182

Length = 490

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 37/171 (21%)

Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
           +G+GK+TLL +L      L Q EI        R    R   YV QQ + I   TV  ++ 
Sbjct: 695 TGSGKSTLLQSL------LSQFEI-----SEGRVWAERSIAYVPQQAW-IMNATVRGNIL 742

Query: 64  FM-----AKLTMDRRTTWLELNKTI------TRVMENLGINHRRQVQISGLSGGQRKRLA 112
           F      A+L    R + LE +         T + E  G+N         LSGGQ+ R++
Sbjct: 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEK-GVN---------LSGGQKARVS 792

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIHQ 161
           LA  +     +   D+P + LD++    VV    L  LA ++R++  A HQ
Sbjct: 793 LARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL--ATHQ 841

Length = 1560

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 27/168 (16%)

Query: 4    SGAGKTTLLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIEELTVLE 60
            +G+GK+TLL+AL + +    +GEI ++G     ++     +  G + Q+ F+        
Sbjct: 1254 TGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI-------- 1303

Query: 61   HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQ--------VQISG---LSGGQRK 109
                  +  +D    W +  + I +V E +G+    +        V + G   LS G ++
Sbjct: 1304 -FSGTFRKNLDPYEQWSD--EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360

Query: 110  RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
             + LA  +L++ +IL  DEP+  LD  +   +   LKQ      +++ 
Sbjct: 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 21/195 (10%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
           +  +GAGK+T++  L     G+     G IL  G  ++    ++      G + Q+  LI
Sbjct: 36  VGENGAGKSTMMKVLT----GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91

Query: 54  EELTVLEHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
            +LT+ E++ F+ +  ++R  R  W ++     +++  L +       +  LS G+++ +
Sbjct: 92  PQLTIAENI-FLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150

Query: 112 ALAVQLLTEPQILFCDEPTTGL---DSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
            +A  L  E +++  DEPT  L   ++ S   V+  LK         I  I      +FE
Sbjct: 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG----IVYISHRLKEIFE 206

Query: 169 KFDTVSLLAHGGLLA 183
             D V++   G  +A
Sbjct: 207 ICDDVTVFRDGQFIA 221

Length = 501

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 35/138 (25%)

Query: 5   GAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-----QDF-LIEE 55
           G+GK+T   LL  L +   G    EILL+G P++     +   Y         DF L ++
Sbjct: 359 GSGKSTLAMLLTGLYQPQSG----EILLDGKPVT---AEQPEDYRKLFSAVFTDFHLFDQ 411

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ---ISG--LSGGQRKR 110
           L   E       L       WLE           L + H+ +++   IS   LS GQ+KR
Sbjct: 412 LLGPEGKPANPALV----EKWLE----------RLKMAHKLELEDGRISNLKLSKGQKKR 457

Query: 111 LALAVQLLTEPQILFCDE 128
           LAL + L  E  IL  DE
Sbjct: 458 LALLLALAEERDILLLDE 475

Length = 547

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           L+ GQ++RL LA  L+  P+++  DE    LD    + ++NL+ +L
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195

Length = 267

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
           Q   LSGG+ +R+A+A  LL        DEP+  LD     N    +++L+ E +
Sbjct: 68  QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK 122

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 37/149 (24%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTV-----------MSRISGYVAQ 48
           PSG GK+TLL    + V GL +   GEI + G    R V           M      V Q
Sbjct: 38  PSGCGKSTLL----RMVAGLERITSGEIWIGG----RVVNELEPADRDIAM------VFQ 83

Query: 49  QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN---HRRQVQISGLSG 105
              L   ++V E++ +  K+   R     E+ + +      L +     R+  +   LSG
Sbjct: 84  NYALYPHMSVRENMAYGLKI---RGMPKAEIEERVAEAARILELEPLLDRKPRE---LSG 137

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           GQR+R+A+   ++ EP +   DEP + LD
Sbjct: 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 29/137 (21%)

Query: 4   SGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELT 57
           +G GK+TL     K   GL    +GEILL+G  +S   R     +   +     L ++L 
Sbjct: 377 NGCGKSTLA----KLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI 432

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ------ISGLSGGQRKRL 111
             +  +     ++D    +L+           L I  + +++       + LS GQ+KRL
Sbjct: 433 GPDEGE---HASLDNAQQYLQ----------RLEIADKVKIEDGGFSTTTALSTGQQKRL 479

Query: 112 ALAVQLLTEPQILFCDE 128
           AL    L +  IL  DE
Sbjct: 480 ALICAWLEDRPILLFDE 496

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 103 LSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
            SGG+  RL LA++ +         L  DE  TG+    A  V   LK+L+  S  V+C 
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCI 229

Query: 159 IHQP 162
            H P
Sbjct: 230 THLP 233

RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 276

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 89  NLGINHRRQVQI-SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDSYSANNVVNLL 145
           ++G+ +    Q  S LSGG+ +R+ LA +L       +   DEP+TGL     N ++ ++
Sbjct: 73  DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132

Query: 146 KQLACESRIVICAIHQPT 163
           K L      VI   H   
Sbjct: 133 KGLIDLGNTVILIEHNLD 150

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
KOG0061|consensus	613		100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
KOG0055|consensus	1228		100.0
KOG0058|consensus	716		100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
KOG0057|consensus	591		100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
KOG0065|consensus	1391		100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
KOG0055|consensus	1228		100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
KOG0059|consensus	885		100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
KOG0056|consensus	790		100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.98
KOG0054|consensus	1381		99.98
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.98
KOG0054|consensus	1381		99.98
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.97
KOG0065|consensus	1391		99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
KOG0927|consensus	614		99.95
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.95
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.95
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.94
COG4178	604	ABC-type uncharacterized transport system, permeas	99.94
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
KOG0062|consensus	582		99.93
KOG0066|consensus	807		99.93
KOG0927|consensus	614		99.92
KOG0062|consensus	582		99.92
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.92
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.9
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.9
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.89
KOG0060|consensus	659		99.89
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.89
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.88
KOG2355|consensus	291		99.88
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.87
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.86
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.85
KOG0064|consensus	728		99.84
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.82
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.81
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.81
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.79
KOG0063|consensus	592		99.79
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.78
KOG0066|consensus	807		99.77
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.76
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.76
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.74
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.7
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.65
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.64
PHA02562	562	46 endonuclease subunit; Provisional	99.63
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.62
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.62
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.62
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.61
KOG0063|consensus	592		99.61
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.6
PRK10869	553	recombination and repair protein; Provisional	99.57
PRK03918	880	chromosome segregation protein; Provisional	99.55
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.54
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.53
PRK01156	895	chromosome segregation protein; Provisional	99.52
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.5
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.5
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.48
COG3910	233	Predicted ATPase [General function prediction only	99.46
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.45
PRK13695	174	putative NTPase; Provisional	99.44
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.38
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.38
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.37
cd01128	249	rho_factor Transcription termination factor rho is	99.36
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.34
PRK02224	880	chromosome segregation protein; Provisional	99.32
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.32
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.31
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.27
PRK00064	361	recF recombination protein F; Reviewed	99.26
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.2
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.2
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.17
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.15
TIGR00611	365	recf recF protein. All proteins in this family for	99.12
PRK06067	234	flagellar accessory protein FlaH; Validated	99.05
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.03
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.0
smart00382	148	AAA ATPases associated with a variety of cellular	98.99
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.98
PRK14079	349	recF recombination protein F; Provisional	98.97
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.94
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.93
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.89
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.89
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.83
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.8
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.74
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.68
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.6
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.57
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.56
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.54
PRK09825	176	idnK D-gluconate kinase; Provisional	98.49
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.48
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.47
PRK11545	163	gntK gluconate kinase 1; Provisional	98.44
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.43
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.41
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.4
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.36
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.32
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.32
PRK01889	356	GTPase RsgA; Reviewed	98.29
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.27
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.25
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.23
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.22
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.2
PRK10416	318	signal recognition particle-docking protein FtsY;	98.2
PRK06315	442	type III secretion system ATPase; Provisional	98.16
PLN02318	656	phosphoribulokinase/uridine kinase	98.15
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.13
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.13
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.12
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.1
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.09
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.08
PRK00098	298	GTPase RsgA; Reviewed	98.06
PRK13764	602	ATPase; Provisional	98.06
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.04

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-60  Score=365.26  Aligned_cols=189  Identities=29%  Similarity=0.433  Sum_probs=171.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      |||||||||||||||+++.. +++|+|+++|.++..    ...|+.+|+|||+.++||.+||.||+.++...-  ...+.
T Consensus        34 iGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k  110 (240)
T COG1126          34 IGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSK  110 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCH
Confidence            69999999999999999988 799999999987742    246788999999999999999999999875422  23345


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ++.++.+.++|+++||.+.++.+|.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.+++++++|.|.|
T Consensus       111 ~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMi  190 (240)
T COG1126         111 AEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI  190 (240)
T ss_pred             HHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEE
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++||++ .++.+.+|||++|++ |+++.+|+|++++..
T Consensus       191 vVTHEM-~FAr~VadrviFmd~-G~iie~g~p~~~f~~  226 (240)
T COG1126         191 IVTHEM-GFAREVADRVIFMDQ-GKIIEEGPPEEFFDN  226 (240)
T ss_pred             EEechh-HHHHHhhheEEEeeC-CEEEEecCHHHHhcC
Confidence            999997 599999999999987 988889999988653

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.6e-57  Score=362.29  Aligned_cols=188  Identities=29%  Similarity=0.470  Sum_probs=173.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      ||.||||||||+|||+++.. |++|+|.++|.++..      ...|+.||++||+++++...||++|++|+.....   .
T Consensus        38 IG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~  113 (339)
T COG1135          38 IGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---V  113 (339)
T ss_pred             EcCCCCcHHHHHHHHhccCC-CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---C
Confidence            69999999999999999988 799999999988853      2356789999999999999999999999988764   3


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ++++.++++.++++.+||.++.+++|.+|||||||||+|||||+.+|++||+|||||+|||.+.+.|+++|+++.++ |.
T Consensus       114 ~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl  193 (339)
T COG1135         114 PKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL  193 (339)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999876 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||+++||.+ +.+..+|||+.+|++ |++++.|+..+++.+
T Consensus       194 TIvlITHEm-~Vvk~ic~rVavm~~-G~lvE~G~v~~vF~~  232 (339)
T COG1135         194 TIVLITHEM-EVVKRICDRVAVLDQ-GRLVEEGTVSEVFAN  232 (339)
T ss_pred             EEEEEechH-HHHHHHhhhheEeeC-CEEEEeccHHHhhcC
Confidence            999999997 589999999999987 999999999988753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-56  Score=348.32  Aligned_cols=188  Identities=29%  Similarity=0.442  Sum_probs=172.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|||||||||+||+|++++. |++|+|++||+++..   ..+|+.||||-|...+||++||.||+++...+.   .++.+
T Consensus        33 iGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~  108 (309)
T COG1125          33 IGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKE  108 (309)
T ss_pred             ECCCCCcHHHHHHHHhcccC-CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHH
Confidence            69999999999999999999 799999999999865   357888999999999999999999999876653   34566


Q ss_pred             HHHHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          78 ELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                      ..+++++++++.+||+  ++.+++|.+|||||+|||.+||||+.+|+++|+||||++|||.++.++.+.+.++.++ ++|
T Consensus       109 ~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kT  188 (309)
T COG1125         109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT  188 (309)
T ss_pred             HHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCE
Confidence            7888999999999997  4899999999999999999999999999999999999999999999999999999876 999


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++|||.+ ++.+++||+++|++ |+++..++|++++..
T Consensus       189 ivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P~~il~~  226 (309)
T COG1125         189 IVFVTHDID-EALKLADRIAVMDA-GEIVQYDTPDEILAN  226 (309)
T ss_pred             EEEEecCHH-HHHhhhceEEEecC-CeEEEeCCHHHHHhC
Confidence            999999975 79999999999987 999999999988653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.4e-55  Score=360.16  Aligned_cols=188  Identities=28%  Similarity=0.396  Sum_probs=174.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.. |++|+|+|+|++++. .+..|.+++|||+..+||.|||+||++|+.....   ....+.
T Consensus        35 lGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei  110 (338)
T COG3839          35 LGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEI  110 (338)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHH
Confidence            69999999999999999998 799999999999986 4556789999999999999999999999987653   234577


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++.+.++|++.++++|.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|+++.++ +.|+|++
T Consensus       111 ~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYV  190 (338)
T COG3839         111 DKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV  190 (338)
T ss_pred             HHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876 8899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |||.. ++..++||+++|++ |++...|+|.++...
T Consensus       191 THDq~-EAmtladri~Vm~~-G~i~Q~g~p~ely~~  224 (338)
T COG3839         191 THDQV-EAMTLADRIVVMND-GRIQQVGTPLELYER  224 (338)
T ss_pred             cCCHH-HHHhhCCEEEEEeC-CeeeecCChHHHhhC
Confidence            99975 79999999999996 999999999998754

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-54  Score=347.96  Aligned_cols=190  Identities=30%  Similarity=0.423  Sum_probs=172.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe---eCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC---PISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~---~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||||+|+|+.. |++|.|.+||+   |.+.. ...++||||||+..+|+.|||.+|++|+..... ...+.
T Consensus        34 lGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~  111 (345)
T COG1118          34 LGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSE  111 (345)
T ss_pred             ECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCCh
Confidence            59999999999999999999 79999999999   55442 335779999999999999999999999986652 23445


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ...+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|++||||||+++||...+.++.+.|+++.++ |.|+
T Consensus       112 ~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~tt  191 (345)
T COG1118         112 AEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT  191 (345)
T ss_pred             hhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceE
Confidence            677889999999999999999999999999999999999999999999999999999999999999999999876 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +++|||. +++.++||||++|++ |+|...|+++|+..+
T Consensus       192 vfVTHD~-eea~~ladrvvvl~~-G~Ieqvg~p~ev~~~  228 (345)
T COG1118         192 VFVTHDQ-EEALELADRVVVLNQ-GRIEQVGPPDEVYDH  228 (345)
T ss_pred             EEEeCCH-HHHHhhcceEEEecC-CeeeeeCCHHHHhcC
Confidence            9999997 589999999999998 999999999998653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4e-54  Score=336.55  Aligned_cols=188  Identities=31%  Similarity=0.451  Sum_probs=171.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||||+|.|+++ |++|+|+++|.++..      ...++++|++||...+|..|||+||+.|..+-+.  ..
T Consensus        40 iGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~l  116 (263)
T COG1127          40 LGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KL  116 (263)
T ss_pred             ECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cC
Confidence            69999999999999999999 799999999999853      1356789999999999999999999999876553  23


Q ss_pred             cHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          75 TWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      +.+..++.+..-|+.+||... .+++|++|||||++|++||||++.+|+++++||||+||||.+...+.++|+++++. +
T Consensus       117 p~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg  196 (263)
T COG1127         117 PESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG  196 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC
Confidence            455677788889999999977 89999999999999999999999999999999999999999999999999999977 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|++++|||.. .+..+|||++++.+ |+|+..|+++++.+
T Consensus       197 ~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~  235 (263)
T COG1127         197 LTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLA  235 (263)
T ss_pred             CEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHh
Confidence            99999999985 79999999999998 99999999998864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-54  Score=359.73  Aligned_cols=188  Identities=29%  Similarity=0.423  Sum_probs=172.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.. |++|+|.++|++++.. ..+|.+|+|||+-.+||.|||.||++|+.....  ....++.
T Consensus        37 LGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i  113 (352)
T COG3842          37 LGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEI  113 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHH
Confidence            69999999999999999999 7999999999999764 346779999999999999999999999987332  2234557


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.++.+++|.+|||||||||+|||||+.+|++||||||.|+||..-+.++...++++.++ |.|.|++
T Consensus       114 ~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~V  193 (352)
T COG3842         114 KARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV  193 (352)
T ss_pred             HHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            789999999999999999999999999999999999999999999999999999999999999999999765 9999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||. +++..++|||++|++ |++...|+|+++..
T Consensus       194 THDq-eEAl~msDrI~Vm~~-G~I~Q~gtP~eiY~  226 (352)
T COG3842         194 THDQ-EEALAMSDRIAVMND-GRIEQVGTPEEIYE  226 (352)
T ss_pred             ECCH-HHHhhhccceEEccC-CceeecCCHHHHhh
Confidence            9997 589999999999987 99999999998864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=6e-54  Score=343.59  Aligned_cols=190  Identities=30%  Similarity=0.403  Sum_probs=168.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-cccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR-RTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~   76 (197)
                      +||||||||||||+|+|+++ |.+|+|+++|+++..   +.+.+.++||||.+...+.+||+|.+.++..-+... ....
T Consensus        34 iGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~  112 (258)
T COG1120          34 LGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS  112 (258)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCC
Confidence            69999999999999999999 799999999999864   346788999999998888999999999875432211 1123


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~i  155 (197)
                      +++++.+.+.|+.+++.+.+++.+.+|||||||||.|||||+++|++|||||||++||...+.+++++++++++ +|.|+
T Consensus       113 ~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tv  192 (258)
T COG1120         113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV  192 (258)
T ss_pred             HhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEE
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999995 48999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+++||++ .+.++||++++|++ |++++.|+|++++.
T Consensus       193 v~vlHDlN-~A~ryad~~i~lk~-G~i~a~G~p~evlT  228 (258)
T COG1120         193 VMVLHDLN-LAARYADHLILLKD-GKIVAQGTPEEVLT  228 (258)
T ss_pred             EEEecCHH-HHHHhCCEEEEEEC-CeEEeecCcchhcC
Confidence            99999986 89999999999987 99999999987754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.7e-53  Score=349.16  Aligned_cols=189  Identities=35%  Similarity=0.549  Sum_probs=170.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.+...  ...++.+||+||++.+++.+||+||+.|++.++....   ..
T Consensus        37 lG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~  112 (293)
T COG1131          37 LGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EE  112 (293)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hH
Confidence            69999999999999999999 799999999999865  3456789999999999999999999999988765321   23


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii  157 (197)
                      .+++++++++.++|.+..++++++||+|||||++||+||+++|++|||||||+||||.++.++.++|+++++++ .||++
T Consensus       113 ~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli  192 (293)
T COG1131         113 AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL  192 (293)
T ss_pred             HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            45789999999999987788999999999999999999999999999999999999999999999999999887 79999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      +||.+. ++..+||++++|++ |++++.|+++++...+
T Consensus       193 ssH~l~-e~~~~~d~v~il~~-G~~~~~g~~~~l~~~~  228 (293)
T COG1131         193 STHILE-EAEELCDRVIILND-GKIIAEGTPEELKEKF  228 (293)
T ss_pred             eCCcHH-HHHHhCCEEEEEeC-CEEEEeCCHHHHHHhh
Confidence            999975 78999999999987 9999999998876654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-53  Score=336.44  Aligned_cols=172  Identities=31%  Similarity=0.434  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|+|+.+ |++|+|.++|.++..  ....++||||++.++|.+||.||+.++.....   ....+..
T Consensus        35 lGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~  108 (248)
T COG1116          35 LGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEAR  108 (248)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHH
Confidence            69999999999999999999 799999999999833  23557999999999999999999999877543   2234455


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t  159 (197)
                      +++.++++.+||.+..+++|.+|||||||||+|||||+.+|++|+|||||++||..++..+.+.+.++.++ +.|++++|
T Consensus       109 ~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT  188 (248)
T COG1116         109 ERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT  188 (248)
T ss_pred             HHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999998764 89999999


Q ss_pred             cCCcchHHhhcCeEEEEeCC
Q psy4235         160 HQPTSGVFEKFDTVSLLAHG  179 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~g  179 (197)
                      ||.. ++..++|||++|.++
T Consensus       189 Hdi~-EAv~LsdRivvl~~~  207 (248)
T COG1116         189 HDVD-EAVYLADRVVVLSNR  207 (248)
T ss_pred             CCHH-HHHhhhCEEEEecCC
Confidence            9985 789999999999874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.5e-53  Score=332.61  Aligned_cols=175  Identities=34%  Similarity=0.513  Sum_probs=154.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +|||||||||||++|.|+.. |++|+|+++|.++...      . .++.+|||||+.+|+|.+||.||+.++..+.... 
T Consensus        37 ~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~-  114 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS-  114 (226)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-
Confidence            69999999999999999999 6999999999998632      1 2456999999999999999999999876554321 


Q ss_pred             ccHHHHHHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQ-VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                        .....+++.++++.+||.+..+ ++|.+|||||||||+|||||+++|+++|+||||.+||..+.+.+++++++++++ 
T Consensus       115 --~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~  192 (226)
T COG1136         115 --AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER  192 (226)
T ss_pred             --hhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence              1145677889999999997766 889999999999999999999999999999999999999999999999999866 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      |+|+|++|||+  .+..+|||++.+.+ |++
T Consensus       193 g~tii~VTHd~--~lA~~~dr~i~l~d-G~~  220 (226)
T COG1136         193 GKTIIMVTHDP--ELAKYADRVIELKD-GKI  220 (226)
T ss_pred             CCEEEEEcCCH--HHHHhCCEEEEEeC-Cee
Confidence            89999999996  57899999999998 664

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-53  Score=337.50  Aligned_cols=189  Identities=32%  Similarity=0.423  Sum_probs=162.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCC--CCCCCHHHHHHHHHHccCC-ccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFL--IEELTVLEHLQFMAKLTMD-RRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~~~~~-~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++.....+.+||||||...+  -..+||+|.+.++...+.. .....+
T Consensus        36 iGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~  114 (254)
T COG1121          36 IGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK  114 (254)
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccH
Confidence            69999999999999999999 7999999999987655445679999996432  2336999999986432211 111223


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      .+++.++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||||+|+|+.++..|+++|++++++|+||++
T Consensus       115 ~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~  194 (254)
T COG1121         115 KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLM  194 (254)
T ss_pred             HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|||+. .+..+||+++.|+  +++++.|+++++++
T Consensus       195 vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~~~~  227 (254)
T COG1121         195 VTHDLG-LVMAYFDRVICLN--RHLIASGPPEEVLT  227 (254)
T ss_pred             EeCCcH-HhHhhCCEEEEEc--CeeEeccChhhccC
Confidence            999985 7999999999995  56778899988765

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.3e-53  Score=322.35  Aligned_cols=187  Identities=28%  Similarity=0.401  Sum_probs=172.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|||||||||+||+|++++. |++|.|+++|.+....  ..++.||.++.+..+|..||++|||.|++.++..   ...+
T Consensus        34 LG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l---~~~~  109 (245)
T COG4555          34 LGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL---SRKE  109 (245)
T ss_pred             EcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh---hhhH
Confidence            59999999999999999999 7999999999998543  4578899999888999999999999999987643   3456


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .++++.++.+.|+|.+++++++++||.||||||+|||||+++|++++|||||||||..+++.+.+.+++++++|++||++
T Consensus       110 ~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFS  189 (245)
T COG4555         110 IKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS  189 (245)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEe
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||.+ .++..+||+++++++ |.+++.|+++++..
T Consensus       190 SH~m-~EvealCDrvivlh~-Gevv~~gs~~~l~~  222 (245)
T COG4555         190 SHIM-QEVEALCDRVIVLHK-GEVVLEGSIEALDA  222 (245)
T ss_pred             cccH-HHHHHhhheEEEEec-CcEEEcCCHHHHHH
Confidence            9997 479999999999998 99999999987754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=2.6e-52  Score=314.19  Aligned_cols=187  Identities=29%  Similarity=0.396  Sum_probs=169.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.. |.+|+|++||++.+.. +..|-++++||++++|..+||.+|+.++..-.  .+. ....
T Consensus        31 ~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~--LkL-~a~~  106 (231)
T COG3840          31 LGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG--LKL-NAEQ  106 (231)
T ss_pred             ECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc--ccc-CHHH
Confidence            69999999999999999998 7999999999998653 45677999999999999999999999875422  122 2456


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      +++++.++..+||..+.++.|.+|||||||||+|||+|+.+-+||+||||||+|||.-+.++..++.+++.+ +.|++++
T Consensus       107 r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV  186 (231)
T COG3840         107 REKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV  186 (231)
T ss_pred             HHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence            788999999999999999999999999999999999999999999999999999999999999999999865 8899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+++ ++.+++|+++++.+ |+|.+.|+.++++.
T Consensus       187 TH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~~~~~  219 (231)
T COG3840         187 THHPE-DAARIADRVVFLDN-GRIAAQGSTQELLS  219 (231)
T ss_pred             eCCHH-HHHHhhhceEEEeC-CEEEeeccHHHHhc
Confidence            99985 79999999999998 99999999988764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-52  Score=325.52  Aligned_cols=190  Identities=34%  Similarity=0.449  Sum_probs=168.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC---
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD---   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~---   71 (197)
                      |||||||||||||+|+|+.. |++|+|.++|.++..      ..+++.+||+||++++.+.+||.+|+..+..-+..   
T Consensus        36 IG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~  114 (258)
T COG3638          36 IGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR  114 (258)
T ss_pred             ECCCCCcHHHHHHHHhcccC-CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHH
Confidence            69999999999999999888 799999999988753      23567899999999999999999999876433221   


Q ss_pred             --ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 --RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                        .....++.+..+-+.|+++|+.+.+.++..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|++++
T Consensus       115 slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in  194 (258)
T COG3638         115 SLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN  194 (258)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHH
Confidence              122334567788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++ |.|+|+..|+.+ .+.++|||++-|++ |+++++|+++++..
T Consensus       195 ~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~-G~ivfDg~~~el~~  237 (258)
T COG3638         195 QEDGITVIVNLHQVD-LAKKYADRIIGLKA-GRIVFDGPASELTD  237 (258)
T ss_pred             HHcCCEEEEEechHH-HHHHHHhhheEecC-CcEEEeCChhhhhH
Confidence            64 899999999985 89999999999987 99999999987543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-51  Score=345.20  Aligned_cols=187  Identities=23%  Similarity=0.338  Sum_probs=167.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.+ |++|+|+++|+++... ..++.+|||||++.+||.+||+||+.|+.....   ....+.
T Consensus        36 lG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~  111 (356)
T PRK11650         36 VGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEI  111 (356)
T ss_pred             ECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 234679999999999999999999999865321   223344


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ +.|+|++
T Consensus       112 ~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v  191 (356)
T PRK11650        112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV  191 (356)
T ss_pred             HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999999999999999999999875 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       192 THd~~-ea~~l~D~i~vl~~-G~i~~~g~~~~~~~  224 (356)
T PRK11650        192 THDQV-EAMTLADRVVVMNG-GVAEQIGTPVEVYE  224 (356)
T ss_pred             eCCHH-HHHHhCCEEEEEeC-CEEEEECCHHHHHh
Confidence            99974 78999999999987 99999999998754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.2e-51  Score=341.99  Aligned_cols=187  Identities=27%  Similarity=0.462  Sum_probs=166.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|+++...      ..++.+||+||++.+++.+||.||+.++.....   .
T Consensus        37 iG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~  112 (343)
T TIGR02314        37 IGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---T  112 (343)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---C
Confidence            69999999999999999998 7999999999998542      135679999999999999999999998764321   2


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ +.
T Consensus       113 ~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~  192 (343)
T TIGR02314       113 PKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL  192 (343)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            23345677899999999999999999999999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||++ +.+.++||++++|++ |++++.|++++++.
T Consensus       193 tiiliTH~~-~~v~~~~d~v~vl~~-G~iv~~g~~~~v~~  230 (343)
T TIGR02314       193 TILLITHEM-DVVKRICDCVAVISN-GELIEQGTVSEIFS  230 (343)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHc
Confidence            999999997 478899999999987 99999999988753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.9e-51  Score=337.90  Aligned_cols=188  Identities=26%  Similarity=0.373  Sum_probs=167.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...  ..++.+||+||++.+++.+||+||+.++...+.   ....+
T Consensus        39 lGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~  114 (306)
T PRK13537         39 LGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAA  114 (306)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence            69999999999999999998 7999999999998542  345679999999999999999999998765432   12233


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+++.++++.+++.+..++++++||+|||||++||+||+++|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~  194 (306)
T PRK13537        115 ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLT  194 (306)
T ss_pred             HHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999998779999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++. ++.++||++++|++ |++++.|+++++...
T Consensus       195 sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~~l~~~  228 (306)
T PRK13537        195 THFME-EAERLCDRLCVIEE-GRKIAEGAPHALIES  228 (306)
T ss_pred             CCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhc
Confidence            99975 78899999999988 899999999988643

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-50  Score=341.96  Aligned_cols=187  Identities=27%  Similarity=0.404  Sum_probs=168.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +|||||||||||++|+|+.+ |++|+|.++|+++... ..++.+||+||++.+||.+||.||+.|+.....   ......
T Consensus        36 ~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~  111 (353)
T TIGR03265        36 LGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEV  111 (353)
T ss_pred             ECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999998 7999999999998642 345679999999999999999999999865321   223345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .++++++++.++|.+.+++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ +.|+|++
T Consensus       112 ~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v  191 (353)
T TIGR03265       112 AERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV  191 (353)
T ss_pred             HHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999775 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       192 THd~~-ea~~l~d~i~vl~~-G~i~~~g~~~~~~~  224 (353)
T TIGR03265       192 THDQE-EALSMADRIVVMNH-GVIEQVGTPQEIYR  224 (353)
T ss_pred             cCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78999999999998 89999999998865

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=340.97  Aligned_cols=187  Identities=24%  Similarity=0.376  Sum_probs=167.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.+ |++|+|+++|.++... ..++.+||+||++.+||.+||+||+.|+...+.   ....+.
T Consensus        38 lGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~  113 (351)
T PRK11432         38 LGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEER  113 (351)
T ss_pred             ECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHH
Confidence            59999999999999999998 7999999999998643 234679999999999999999999999865432   223345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ +.|+|++
T Consensus       114 ~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v  193 (351)
T PRK11432        114 KQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV  193 (351)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            678899999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       194 THd~~-e~~~laD~i~vm~~-G~i~~~g~~~~~~~  226 (351)
T PRK11432        194 THDQS-EAFAVSDTVIVMNK-GKIMQIGSPQELYR  226 (351)
T ss_pred             cCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78899999999997 99999999998764

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=6e-51  Score=308.47  Aligned_cols=180  Identities=29%  Similarity=0.437  Sum_probs=163.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|.+..+ |++|+|+++|.++...      -++++||+|||+..+.+..||+||++|......   .
T Consensus        34 ~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~  109 (223)
T COG2884          34 TGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---K  109 (223)
T ss_pred             ECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---C
Confidence            59999999999999999998 7999999999998642      257889999999999999999999999887643   2


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ...+.++++.++|+.+||.+..+..|.+|||||||||+||||++++|++||.||||.+|||....+|++++.++...|.|
T Consensus       110 ~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT  189 (223)
T COG2884         110 PPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT  189 (223)
T ss_pred             CHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      |+++|||. ..+...-.|++.+++ |+++.+.
T Consensus       190 Vl~ATHd~-~lv~~~~~rvl~l~~-Grl~~d~  219 (223)
T COG2884         190 VLMATHDL-ELVNRMRHRVLALED-GRLVRDE  219 (223)
T ss_pred             EEEEeccH-HHHHhccCcEEEEeC-CEEEecc
Confidence            99999996 467777888999987 8887543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.8e-50  Score=335.03  Aligned_cols=188  Identities=27%  Similarity=0.423  Sum_probs=166.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...  ..++.+||+||++.+++.+||.||+.+....+.   .....
T Consensus        25 ~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~  100 (302)
T TIGR01188        25 LGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG---LPKDE  100 (302)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence            69999999999999999998 7999999999987532  335679999999999999999999998765432   12233


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++
T Consensus       101 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~  180 (302)
T TIGR01188       101 AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT  180 (302)
T ss_pred             HHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45678899999999988999999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++. ++..+||++++|++ |++++.|+++++...
T Consensus       181 sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       181 THYME-EADKLCDRIAIIDH-GRIIAEGTPEELKRR  214 (302)
T ss_pred             CCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHHh
Confidence            99974 78899999999987 899999999887654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.4e-51  Score=324.80  Aligned_cols=188  Identities=30%  Similarity=0.425  Sum_probs=168.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC----cccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~----~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +|+||||||||+++++|+++ |++|.|.++|.++.    ....++++|||||+| ..+..-||.+.++|+.....   .+
T Consensus        36 ~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~  111 (235)
T COG1122          36 IGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LP  111 (235)
T ss_pred             ECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CC
Confidence            59999999999999999999 79999999999976    235678899999997 34445599999999876442   33


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                      .++.++++.++++.+++.+.+++++.+|||||||||+||.+|+.+|++||||||||+||+..++++++++++++.+ |.|
T Consensus       112 ~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~t  191 (235)
T COG1122         112 REEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT  191 (235)
T ss_pred             HHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999999987 689


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +|++|||.. .+..+||++++|++ |+++.+|+|.++++.
T Consensus       192 ii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p~~i~~~  229 (235)
T COG1122         192 IIIVTHDLE-LVLEYADRVVVLDD-GKILADGDPAEIFND  229 (235)
T ss_pred             EEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCHHHHhhh
Confidence            999999974 89999999999998 999999999988765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=2.7e-50  Score=340.11  Aligned_cols=187  Identities=25%  Similarity=0.376  Sum_probs=166.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cc----cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VM----SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...   .+    ++.++|+||++.+|+.+||.||+.|......   
T Consensus        25 ~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~---  100 (363)
T TIGR01186        25 MGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLG---  100 (363)
T ss_pred             ECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcC---
Confidence            69999999999999999998 7999999999998642   12    4679999999999999999999998765421   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      ....+..+++.++++.++|..+.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.+++++ +
T Consensus       101 ~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~  180 (363)
T TIGR01186       101 WPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ  180 (363)
T ss_pred             CCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            223345678899999999999999999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|+|++||+.. ++.++||++++|++ |+++..|++++++.
T Consensus       181 ~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ei~~  219 (363)
T TIGR01186       181 KTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPDEILR  219 (363)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHHHHHh
Confidence            99999999975 78999999999987 89999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.3e-50  Score=340.90  Aligned_cols=188  Identities=24%  Similarity=0.376  Sum_probs=167.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce--eEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~--G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|||||||||||++|+|+.+ |++  |+|+++|+++... ..++.++|+||++.+||.+||+||+.|+.....   ....
T Consensus        37 lGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~  112 (362)
T TIGR03258        37 IGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKA  112 (362)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHH
Confidence            59999999999999999998 799  9999999998542 234679999999999999999999999865432   2233


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~i  155 (197)
                      ...+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++  |.|+
T Consensus       113 ~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~ti  192 (362)
T TIGR03258       113 DIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI  192 (362)
T ss_pred             HHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999876  7899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++||+.. ++..+||++++|++ |+++..|+++++...
T Consensus       193 l~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~~~~~~  229 (362)
T TIGR03258       193 LCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQALYDA  229 (362)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence            99999974 78999999999987 999999999988653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=5.6e-50  Score=320.94  Aligned_cols=188  Identities=30%  Similarity=0.466  Sum_probs=163.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...      .+++.++|++|++.+++.+||.||+.+......  ..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~  108 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RL  108 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CC
Confidence            69999999999999999998 7999999999987532      235679999999999999999999988643221  11


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  188 (235)
T cd03261         109 SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL  188 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence            22334567888999999998889999999999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       189 tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  226 (235)
T cd03261         189 TSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTPEELRA  226 (235)
T ss_pred             EEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCHHHHcC
Confidence            9999999974 78889999999987 88988999887653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=5.7e-50  Score=337.78  Aligned_cols=190  Identities=30%  Similarity=0.442  Sum_probs=167.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~   78 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++... ..++.++|+||++.+||.+||.||+.|....... .......
T Consensus        34 lGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~  112 (353)
T PRK10851         34 LGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAA  112 (353)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHH
Confidence            59999999999999999998 7999999999998542 2346799999999999999999999987643210 1122344


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii  157 (197)
                      ..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|+
T Consensus       113 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~  192 (353)
T PRK10851        113 IKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF  192 (353)
T ss_pred             HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999876 889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +||+.. ++..+||++++|++ |+++..|++++++.
T Consensus       193 vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~~i~~  226 (353)
T PRK10851        193 VTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPDQVWR  226 (353)
T ss_pred             EeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            999974 78999999999997 99999999998864

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=6.3e-50  Score=339.50  Aligned_cols=187  Identities=25%  Similarity=0.369  Sum_probs=167.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +|||||||||||++|+|+.+ |++|+|.++|+++... ..++.++|+||++.+||.+||.||+.|+.....   ......
T Consensus        46 lGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~  121 (375)
T PRK09452         46 LGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEI  121 (375)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 235679999999999999999999999765321   223344


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|++
T Consensus       122 ~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~v  201 (375)
T PRK09452        122 TPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV  201 (375)
T ss_pred             HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999999999999999999999875 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|++++++.
T Consensus       202 THd~~-ea~~laDri~vl~~-G~i~~~g~~~~i~~  234 (375)
T PRK09452        202 THDQE-EALTMSDRIVVMRD-GRIEQDGTPREIYE  234 (375)
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78999999999997 99999999998764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=8.5e-50  Score=335.22  Aligned_cols=188  Identities=27%  Similarity=0.396  Sum_probs=166.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...  ..++.+||+||++.+++.+||.||+.++...+..   ....
T Consensus        73 lGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~---~~~~  148 (340)
T PRK13536         73 LGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM---STRE  148 (340)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC---CHHH
Confidence            69999999999999999998 7999999999997532  3456799999999999999999999986554321   2223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.++|.+..++++.+||+|||||++||+||+++|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus       149 ~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilis  228 (340)
T PRK13536        149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT  228 (340)
T ss_pred             HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            44567889999999999999999999999999999999999999999999999999999999999999998789999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||+.. ++.++||++++|++ |++++.|+++++...
T Consensus       229 SH~l~-e~~~~~d~i~il~~-G~i~~~g~~~~l~~~  262 (340)
T PRK13536        229 THFME-EAERLCDRLCVLEA-GRKIAEGRPHALIDE  262 (340)
T ss_pred             CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhh
Confidence            99975 78999999999988 899999999988653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-50  Score=315.67  Aligned_cols=186  Identities=29%  Similarity=0.376  Sum_probs=165.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +|+||||||||.++|+|+.+ |++|+|.++|.++.+.    ..++.+.+|||+|  .+.|..||.+.|..+...+...  
T Consensus        39 vGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--  115 (252)
T COG1124          39 VGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--  115 (252)
T ss_pred             EcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--
Confidence            69999999999999999999 7999999999887653    3567799999997  5889999999998877653221  


Q ss_pred             cHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          75 TWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                         ..++++.++++.+||. .+++++|.+|||||+||++|||||+.+|++||||||||+||+..+.+|+++|.+++++ +
T Consensus       116 ---~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~  192 (252)
T COG1124         116 ---KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG  192 (252)
T ss_pred             ---HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence               2334599999999997 6789999999999999999999999999999999999999999999999999999875 7


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      .|.|++|||.. .+..+|||+++|++ |.+++.++..++...
T Consensus       193 lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~~l~~~  232 (252)
T COG1124         193 LTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTEELLSH  232 (252)
T ss_pred             ceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechhhhhcC
Confidence            89999999974 89999999999988 999999999887654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-50  Score=311.75  Aligned_cols=186  Identities=28%  Similarity=0.434  Sum_probs=162.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      |||||||||||||+++-....    ..+|+|.++|+++-..     .+|+++|+|||.|+.|| +|++||++|+.+.+..
T Consensus        39 IGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~  117 (253)
T COG1117          39 IGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI  117 (253)
T ss_pred             ECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc
Confidence            699999999999999865431    1469999999998542     46788999999999999 8999999999887754


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      ..   +...+.++..|+...|.    +.+++.+..||||||||++|||||+.+|++||||||||+|||.+..+|.+++.+
T Consensus       118 ~~---~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e  194 (253)
T COG1117         118 KD---KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE  194 (253)
T ss_pred             ch---HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence            32   45667888888887774    567788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ .-||+||||.+ ..+.+++|+..++.. |++++.|++++++.
T Consensus       195 Lk~-~yTIviVTHnm-qQAaRvSD~taFf~~-G~LvE~g~T~~iF~  237 (253)
T COG1117         195 LKK-KYTIVIVTHNM-QQAARVSDYTAFFYL-GELVEFGPTDKIFT  237 (253)
T ss_pred             HHh-ccEEEEEeCCH-HHHHHHhHhhhhhcc-cEEEEEcCHHhhhc
Confidence            984 57999999997 589999999999987 89999999998764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-49  Score=336.90  Aligned_cols=187  Identities=22%  Similarity=0.330  Sum_probs=166.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.+ |++|+|+++|+++... ..++.+||+||++.+||.+||.||+.|+.....   ....+.
T Consensus        51 lGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~  126 (377)
T PRK11607         51 LGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEI  126 (377)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 345679999999999999999999999765321   123345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|++
T Consensus       127 ~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v  206 (377)
T PRK11607        127 ASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV  206 (377)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            677899999999999999999999999999999999999999999999999999999999999999998754 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       207 THd~~-ea~~laDri~vl~~-G~i~~~g~~~~~~~  239 (377)
T PRK11607        207 THDQE-EAMTMAGRIAIMNR-GKFVQIGEPEEIYE  239 (377)
T ss_pred             cCCHH-HHHHhCCEEEEEeC-CEEEEEcCHHHHHh
Confidence            99974 78999999999987 99999999998864

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-49  Score=335.84  Aligned_cols=187  Identities=27%  Similarity=0.396  Sum_probs=165.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|.++|+++... ..++.++|+||++.+|+.+||.||+.|+.....   ......
T Consensus        35 ~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~  110 (369)
T PRK11000         35 VGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEI  110 (369)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 234669999999999999999999998764321   122344


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ +.|+|++
T Consensus       111 ~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~v  190 (369)
T PRK11000        111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  190 (369)
T ss_pred             HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       191 THd~~-~~~~~~d~i~vl~~-G~i~~~g~~~~i~~  223 (369)
T PRK11000        191 THDQV-EAMTLADKIVVLDA-GRVAQVGKPLELYH  223 (369)
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78899999999997 99999999988754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-50  Score=314.94  Aligned_cols=190  Identities=26%  Similarity=0.342  Sum_probs=168.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccc----cceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTVLEHLQFMAKLTM------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~----~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------   70 (197)
                      |||||||||||+|+|+|+++ |++|+|.++|++++..+.    +.-++..||...+|++|||.||+..+...+.      
T Consensus        36 IGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l  114 (250)
T COG0411          36 IGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLL  114 (250)
T ss_pred             ECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhh
Confidence            79999999999999999999 799999999999975432    3458899999999999999999998754221      


Q ss_pred             -C--ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          71 -D--RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        71 -~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       .  ......+..+++.++|+++||.+.++++.++||+|||+|+.|||||+.+|++|+||||.+||.+....++.+.|++
T Consensus       115 ~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~  194 (250)
T COG0411         115 GRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE  194 (250)
T ss_pred             ccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence             0  0112345667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++++ |.||+++.||+. .++.+||||+||+. |+++++|+|+++.+
T Consensus       195 i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV~~  239 (250)
T COG0411         195 LRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEVRN  239 (250)
T ss_pred             HHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHHhc
Confidence            9985 689999999974 89999999999998 89889999999865

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4.6e-49  Score=326.73  Aligned_cols=188  Identities=28%  Similarity=0.408  Sum_probs=164.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...  ..++.+||+||++.+++.+||.||+.+....+.   .....
T Consensus        36 ~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~  111 (303)
T TIGR01288        36 LGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTRE  111 (303)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHH
Confidence            59999999999999999998 7999999999987432  235679999999999999999999987544321   12223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus       112 ~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~  191 (303)
T TIGR01288       112 IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT  191 (303)
T ss_pred             HHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++...
T Consensus       192 sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       192 THFME-EAERLCDRLCVLES-GRKIAEGRPHALIDE  225 (303)
T ss_pred             CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhh
Confidence            99974 78899999999987 899999999887643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=6.6e-49  Score=328.49  Aligned_cols=187  Identities=26%  Similarity=0.367  Sum_probs=165.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|+||++.+|+.+||.||+.|+.....   ......
T Consensus         2 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~   77 (325)
T TIGR01187         2 LGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRAEI   77 (325)
T ss_pred             cCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHHHH
Confidence            69999999999999999998 7999999999998542 234679999999999999999999998754321   122334


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ +.|+|++
T Consensus        78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            567889999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       158 THd~~-e~~~~~d~i~vl~~-G~i~~~g~~~~~~~  190 (325)
T TIGR01187       158 THDQE-EAMTMSDRIAIMRK-GKIAQIGTPEEIYE  190 (325)
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78899999999987 89999999988764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=5.6e-49  Score=312.28  Aligned_cols=185  Identities=29%  Similarity=0.417  Sum_probs=161.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..  ...++.++|++|++.+++.+||.+|+.+......   .....
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~  107 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAE  107 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHH
Confidence            59999999999999999988 799999999988743  2234578999999999999999999988654321   12223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii  157 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++||||++.+|++|||||||++||+.+++.+.+.|++++++ +.++|+
T Consensus       108 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~  187 (220)
T cd03265         108 RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL  187 (220)
T ss_pred             HHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            4567889999999998889999999999999999999999999999999999999999999999999999876 889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +||+.. .+..+||++++|++ |+++..++++++
T Consensus       188 ~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~  219 (220)
T cd03265         188 TTHYME-EAEQLCDRVAIIDH-GRIIAEGTPEEL  219 (220)
T ss_pred             EeCCHH-HHHHhCCEEEEEeC-CEEEEeCChHHc
Confidence            999974 78899999999987 888888887653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=7.6e-49  Score=314.39  Aligned_cols=190  Identities=27%  Similarity=0.386  Sum_probs=163.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc---
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR---   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~---   73 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|+||++.+++.+||.||+.+.........   
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~  110 (236)
T cd03219          32 IGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL  110 (236)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence            59999999999999999998 79999999999875421    23458999999999999999999988654321110   


Q ss_pred             ----ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          74 ----TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        74 ----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                          .......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  190 (236)
T cd03219         111 ARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR  190 (236)
T ss_pred             ccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                0122344578899999999988999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       191 ~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  232 (236)
T cd03219         191 ERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTPDEVRN  232 (236)
T ss_pred             HCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCHHHhcc
Confidence            77899999999975 78899999999987 88888899887753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-50  Score=323.43  Aligned_cols=187  Identities=26%  Similarity=0.371  Sum_probs=170.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +|-||||||||+|+|+++++ |++|+|+++|.++...      . .++.+++|||...++|..||.||+.|+.....   
T Consensus        60 MGLSGSGKSTLvR~~NrLie-pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~G---  135 (386)
T COG4175          60 MGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG---  135 (386)
T ss_pred             EecCCCCHHHHHHHHhccCC-CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecC---
Confidence            58999999999999999998 7999999999998532      2 24569999999999999999999999987653   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      ...++.++++.++++.+||..+.+++|.+|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++ +
T Consensus       136 v~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~  215 (386)
T COG4175         136 VPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK  215 (386)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC
Confidence            345677889999999999999999999999999999999999999999999999999999999999999999999876 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +||+++|||.+ ++.++.|||.+|++ |+|+..|+|+|++.
T Consensus       216 KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~eIl~  254 (386)
T COG4175         216 KTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPEEILL  254 (386)
T ss_pred             CeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHHHHHc
Confidence            99999999985 79999999999987 99999999999864

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-49  Score=330.67  Aligned_cols=187  Identities=29%  Similarity=0.470  Sum_probs=164.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...      ..++.++|+||++.+++.+||.||+.+......   .
T Consensus        37 iG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~  112 (343)
T PRK11153         37 IGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---T  112 (343)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---C
Confidence            69999999999999999998 7999999999998532      124679999999999999999999998754321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.
T Consensus       113 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~  192 (343)
T PRK11153        113 PKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL  192 (343)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            22334567889999999998899999999999999999999999999999999999999999999999999999765 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+|++||++. .+.++||++++|++ |++++.|++++++.
T Consensus       193 tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~~~~~  230 (343)
T PRK11153        193 TIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVSEVFS  230 (343)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9999999974 78899999999987 89989999887753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=4.5e-49  Score=311.90  Aligned_cols=175  Identities=26%  Similarity=0.408  Sum_probs=153.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...      .+++.++|++|++.+++.+||.||+.+......   .
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~  110 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---V  110 (216)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---C
Confidence            59999999999999999998 7999999999987431      134679999999999999999999998654321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|
T Consensus       111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  190 (216)
T TIGR00960       111 PPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTT  190 (216)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence            12234567889999999998899999999999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      +|++||+.. .+..+||++++|++ |+
T Consensus       191 ii~vsH~~~-~~~~~~d~i~~l~~-G~  215 (216)
T TIGR00960       191 VLVATHDIN-LVETYRHRTLTLSR-GR  215 (216)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence            999999974 67889999999987 64

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.6e-48  Score=313.28  Aligned_cols=190  Identities=28%  Similarity=0.415  Sum_probs=162.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+||.||+.+....... .......
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  112 (239)
T cd03296          34 LGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAE  112 (239)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHH
Confidence            69999999999999999988 7999999999987542 2245689999999999999999999886433211 0011223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii  157 (197)
                      ..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.|+|+
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii  192 (239)
T cd03296         113 IRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF  192 (239)
T ss_pred             HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            3456788999999998889999999999999999999999999999999999999999999999999999875 889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       193 ~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  226 (239)
T cd03296         193 VTHDQE-EALEVADRVVVMNK-GRIEQVGTPDEVYD  226 (239)
T ss_pred             EeCCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHhc
Confidence            999974 68899999999987 88988999887653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.1e-48  Score=309.00  Aligned_cols=180  Identities=31%  Similarity=0.423  Sum_probs=156.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+|+.||+.+......   ......
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~  107 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEI  107 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHH
Confidence            69999999999999999998 7999999999987532 234569999999999999999999987653321   112234


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.+||++
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~  187 (213)
T cd03259         108 RARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV  187 (213)
T ss_pred             HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            467889999999998899999999999999999999999999999999999999999999999999999764 8899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      ||++. .+..+||++++|++ |+++..|
T Consensus       188 sH~~~-~~~~~~d~v~~l~~-G~i~~~g  213 (213)
T cd03259         188 THDQE-EALALADRIAVMNE-GRIVQVG  213 (213)
T ss_pred             ecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence            99974 68899999999987 8876543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.6e-48  Score=311.69  Aligned_cols=186  Identities=27%  Similarity=0.415  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...   . .++.++|++|++.+++.+||.||+.+......   ...
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~  107 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSK  107 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCH
Confidence            59999999999999999998 7999999999987432   1 23468999999999999999999988653321   112


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++++.|+|
T Consensus       108 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii  187 (232)
T cd03218         108 KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL  187 (232)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            23445678999999999889999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++||++. .+..+||++++|++ |+++..|+++++.
T Consensus       188 ~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  221 (232)
T cd03218         188 ITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPEEIA  221 (232)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHHHhh
Confidence            9999974 78999999999987 8888888888764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.4e-48  Score=322.14  Aligned_cols=187  Identities=26%  Similarity=0.416  Sum_probs=165.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...  ..++.+||+||++.+++.+||.||+.+....+.   .....
T Consensus        34 ~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~  109 (301)
T TIGR03522        34 LGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQL  109 (301)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence            69999999999999999988 7999999999987542  345679999999999999999999998765432   12233


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+++.++++.++|.+..+++++.||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++
T Consensus       110 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~  188 (301)
T TIGR03522       110 LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILS  188 (301)
T ss_pred             HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEE
Confidence            456788999999999999999999999999999999999999999999999999999999999999999965 7899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++. ++.++||++++|++ |++++.|+++++...
T Consensus       189 sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       189 THIMQ-EVEAICDRVIIINK-GKIVADKKLDELSAA  222 (301)
T ss_pred             cCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHHh
Confidence            99974 78999999999987 999999999987653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.1e-48  Score=308.01  Aligned_cols=181  Identities=29%  Similarity=0.412  Sum_probs=157.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|.++..  .++.++|++|++.+++.+|+.||+.+......   .......
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~  109 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEAR  109 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHH
Confidence            59999999999999999988 799999999998753  34678999999999998999999988654321   1122334


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+++++ .+.|+|++|
T Consensus       110 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~s  189 (220)
T cd03293         110 ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVT  189 (220)
T ss_pred             HHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            6788999999999888999999999999999999999999999999999999999999999999999865 488999999


Q ss_pred             cCCcchHHhhcCeEEEEeC-CcEEEEecCh
Q psy4235         160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQV  188 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~  188 (197)
                      |++. .+..+||++++|++ +|+++..++.
T Consensus       190 H~~~-~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         190 HDID-EAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             cCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9974 68899999999983 3888877665

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.5e-48  Score=310.97  Aligned_cols=187  Identities=26%  Similarity=0.447  Sum_probs=162.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...      ..++.++|++|++.+++.+|+.||+.+......   .
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~  112 (233)
T cd03258          37 IGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---V  112 (233)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---C
Confidence            59999999999999999998 7999999999987532      124569999999999999999999988654321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ +.
T Consensus       113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~  192 (233)
T cd03258         113 PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL  192 (233)
T ss_pred             CHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence            22233557889999999998899999999999999999999999999999999999999999999999999999775 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus       193 tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  230 (233)
T cd03258         193 TIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTVEEVFA  230 (233)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhc
Confidence            9999999974 67889999999987 89988898887653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-48  Score=331.25  Aligned_cols=187  Identities=25%  Similarity=0.388  Sum_probs=164.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++....       .++.++|+||++.+|+.+||.||+.+......   
T Consensus        60 vG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---  135 (400)
T PRK10070         60 MGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---  135 (400)
T ss_pred             ECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---
Confidence            59999999999999999998 79999999999985321       13469999999999999999999998754321   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~  152 (197)
                      .......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ .+
T Consensus       136 ~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g  215 (400)
T PRK10070        136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ  215 (400)
T ss_pred             CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence            12233456788999999999999999999999999999999999999999999999999999999999999999975 48


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|||++||+.. ++.++||++++|++ |+++..|+++++..
T Consensus       216 ~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~~l~~  254 (400)
T PRK10070        216 RTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPDEILN  254 (400)
T ss_pred             CeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHHHHHh
Confidence            99999999974 78899999999987 89988899888754

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.2e-50  Score=305.21  Aligned_cols=189  Identities=24%  Similarity=0.408  Sum_probs=169.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc----ceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS----RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~----~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|||||||||.+.++.|+.+ |++|+|+++|.+++..++.    .-+||+||++..|..+||.||+.......... ...
T Consensus        36 LGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~  113 (243)
T COG1137          36 LGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKK  113 (243)
T ss_pred             ECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhH
Confidence            59999999999999999999 7999999999999865432    34899999999999999999999877655321 122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      .+.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+|+.++|||||+|+||.+...|.++++.++..|..|+
T Consensus       114 ~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvL  193 (243)
T COG1137         114 AERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVL  193 (243)
T ss_pred             HHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEE
Confidence            34455688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+-|... +...+|||.+++.+ |++.++|+|+++.+
T Consensus       194 ITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei~~  228 (243)
T COG1137         194 ITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEIVN  228 (243)
T ss_pred             EccccHH-HHHhhhheEEEEec-CeEEecCCHHHHhc
Confidence            9999875 68899999999998 99999999998864

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.7e-48  Score=332.75  Aligned_cols=189  Identities=29%  Similarity=0.380  Sum_probs=164.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~   76 (197)
                      +||||||||||||+|+|+++ |++|+|+++|.++..   ...++.+||++|++.+++.+||.||+.++...+.. .....
T Consensus        35 iGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~  113 (402)
T PRK09536         35 VGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT  113 (402)
T ss_pred             ECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCC
Confidence            69999999999999999998 799999999998754   23456799999999999999999999885422110 01011


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++.+..++++.+||||||||++|||||+++|++|||||||++||+.++.+++++|+++++++.|||
T Consensus       114 ~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TII  193 (402)
T PRK09536        114 ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAV  193 (402)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            23456789999999999999999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++||++. .+.++||++++|++ |+++..|++++++
T Consensus       194 ivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ev~  227 (402)
T PRK09536        194 AAIHDLD-LAARYCDELVLLAD-GRVRAAGPPADVL  227 (402)
T ss_pred             EEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHh
Confidence            9999974 78899999999987 8888999998754

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.8e-49  Score=308.97  Aligned_cols=189  Identities=28%  Similarity=0.458  Sum_probs=174.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|||||||||++|+|.|+++ |++|+|.++|.+++.. .+.+|||+|.+..+|+.+||.|.+.|++.+..   .+.++.+
T Consensus        34 lG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~  108 (300)
T COG4152          34 LGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQ  108 (300)
T ss_pred             ecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHH
Confidence            69999999999999999999 7999999999998653 34568999999999999999999999998864   3456778


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+..||+++++.....+++.+||.|++|++.+..+++++|+++|||||||||||.+.+.+.+.+.+++++|.|||++||
T Consensus       109 ~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH  188 (300)
T COG4152         109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH  188 (300)
T ss_pred             HHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      .+ +.+.++||++++|++ |+.+..|+..++...|.
T Consensus       189 ~M-e~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~G  222 (300)
T COG4152         189 RM-EHVEELCDRLLMLKK-GQTVLYGTVEDIRRSFG  222 (300)
T ss_pred             hH-HHHHHHhhhhheecC-CceEEeccHHHHHHhcC
Confidence            96 589999999999987 77778899999887653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.7e-48  Score=312.01  Aligned_cols=190  Identities=32%  Similarity=0.435  Sum_probs=161.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC----
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM----   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~----   70 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...      ..++.++|++|++.+++.+||.||+.+......    
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  111 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWR  111 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhh
Confidence            59999999999999999998 7999999999987532      234568999999999999999999987532110    


Q ss_pred             -CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          71 -DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        71 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                       ..........+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  191 (241)
T cd03256         112 SLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN  191 (241)
T ss_pred             hhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence             0000112234567889999999988899999999999999999999999999999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++ +.|||++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus       192 ~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~  234 (241)
T cd03256         192 REEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPAELTD  234 (241)
T ss_pred             HhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHHHhhH
Confidence            64 899999999975 68889999999987 88888898887643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=6.1e-48  Score=315.08  Aligned_cols=187  Identities=26%  Similarity=0.384  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .    .++.++|++|++.+++.+||.||+.+......   
T Consensus        56 ~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---  131 (269)
T cd03294          56 MGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG---  131 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC---
Confidence            69999999999999999998 7999999999987531   1    13469999999999999999999988654321   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      .......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ |
T Consensus       132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g  211 (269)
T cd03294         132 VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ  211 (269)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            112233456888999999998899999999999999999999999999999999999999999999999999999754 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++||+.. .+..+||++++|++ |+++..|+++++++
T Consensus       212 ~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  250 (269)
T cd03294         212 KTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPEEILT  250 (269)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99999999974 68899999999987 88888899888754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3e-48  Score=307.54  Aligned_cols=179  Identities=28%  Similarity=0.453  Sum_probs=156.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|+||||||||+++|+|+++ |++|+|.++|.++..  ..+++.++|++|++.+++.+||.||+.+....+.   .....
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~  112 (218)
T cd03266          37 LGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDE  112 (218)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHH
Confidence            59999999999999999988 799999999998753  2345679999999999999999999987654321   12233


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~  192 (218)
T cd03266         113 LTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS  192 (218)
T ss_pred             HHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            45678899999999988999999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ||+.. .+..+||++++|++ |+++..
T Consensus       193 tH~~~-~~~~~~d~i~~l~~-G~i~~~  217 (218)
T cd03266         193 THIMQ-EVERLCDRVVVLHR-GRVVYE  217 (218)
T ss_pred             eCCHH-HHHHhcCEEEEEEC-CEEeec
Confidence            99974 78899999999987 887654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-48  Score=317.99  Aligned_cols=187  Identities=28%  Similarity=0.419  Sum_probs=160.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...     ..++.+||+||++. .+..+||+||+.|......   .
T Consensus        39 ~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~  114 (287)
T PRK13637         39 IGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG---L  114 (287)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC---C
Confidence            59999999999999999998 7999999999998531     33567999999973 3335799999998654321   2


Q ss_pred             cHHHHHHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          75 TWLELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                      ...+..+++.++++.+||.  +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++++++ 
T Consensus       115 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~  194 (287)
T PRK13637        115 SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY  194 (287)
T ss_pred             CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc
Confidence            2334556788999999997  6789999999999999999999999999999999999999999999999999999865 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.|||++||+.. ++..+||++++|++ |++++.|+++++++
T Consensus       195 g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~  234 (287)
T PRK13637        195 NMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPREVFK  234 (287)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            899999999974 67889999999987 89989999988754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.1e-48  Score=326.56  Aligned_cols=185  Identities=31%  Similarity=0.437  Sum_probs=163.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...       ..++.++|+||++.+|+.+||.||+.|+.....   
T Consensus        29 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---  104 (354)
T TIGR02142        29 FGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR---  104 (354)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC---
Confidence            59999999999999999998 7999999999987421       234679999999999999999999998654211   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                        .....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +
T Consensus       105 --~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g  182 (354)
T TIGR02142       105 --PSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG  182 (354)
T ss_pred             --hhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence              1223456889999999999999999999999999999999999999999999999999999999999999999875 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       183 ~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  221 (354)
T TIGR02142       183 IPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIAEVWA  221 (354)
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHHHHhc
Confidence            89999999974 78899999999987 89989999988764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=7.4e-48  Score=309.56  Aligned_cols=188  Identities=28%  Similarity=0.452  Sum_probs=162.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...     .+++.++|++|++.+++.+||.||+.+......  ...
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~  109 (240)
T PRK09493         33 IGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GAS  109 (240)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCC
Confidence            59999999999999999988 7999999999987531     234579999999999999999999987542111  112


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.++|+++++++.|+
T Consensus       110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  189 (240)
T PRK09493        110 KEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTM  189 (240)
T ss_pred             HHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEE
Confidence            23345678899999999988899999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+..+||++++|++ |++++.|+++++.+
T Consensus       190 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  225 (240)
T PRK09493        190 VIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQVLIK  225 (240)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHHHHhc
Confidence            99999975 67889999999987 89988898887653

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.6e-48  Score=307.05  Aligned_cols=174  Identities=32%  Similarity=0.465  Sum_probs=151.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++....       .++.++|++|++.+++.+||.||+.+......   
T Consensus        36 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---  111 (218)
T cd03255          36 VGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---  111 (218)
T ss_pred             EcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---
Confidence            69999999999999999998 79999999999875321       23569999999999999999999998654321   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~  152 (197)
                      .......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++ ++
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~  191 (218)
T cd03255         112 VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG  191 (218)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            11223446788999999999888999999999999999999999999999999999999999999999999999987 58


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      .|+|++||+.. .+. .||++++|++ |+
T Consensus       192 ~tii~~sH~~~-~~~-~~d~v~~l~~-G~  217 (218)
T cd03255         192 TTIVVVTHDPE-LAE-YADRIIELRD-GK  217 (218)
T ss_pred             CeEEEEECCHH-HHh-hhcEEEEeeC-Cc
Confidence            99999999975 565 9999999987 64

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-48  Score=320.39  Aligned_cols=187  Identities=26%  Similarity=0.339  Sum_probs=159.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---------------------------ccccceEEEEecCC-CC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---------------------------TVMSRISGYVAQQD-FL   52 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---------------------------~~~~~~~~~v~q~~-~~   52 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.+...                           ..+++.+||+||++ ..
T Consensus        39 iG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~  117 (305)
T PRK13651         39 IGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQ  117 (305)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccc
Confidence            69999999999999999998 799999999876421                           12356799999985 23


Q ss_pred             CCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235          53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT  131 (197)
Q Consensus        53 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts  131 (197)
                      +...||.||+.|+.....   .......+++.++++.+||. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus       118 l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~  194 (305)
T PRK13651        118 LFEQTIEKDIIFGPVSMG---VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTA  194 (305)
T ss_pred             cccccHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            345699999998654321   22334556789999999996 68899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       132 ~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +||+.++..+.++|++++++|.|||++||+.. .+.++|||+++|++ |++++.|++++++.
T Consensus       195 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~~~~~~  254 (305)
T PRK13651        195 GLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDTYDILS  254 (305)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            99999999999999999877999999999974 78899999999987 88999999988754

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=6.6e-48  Score=305.95  Aligned_cols=184  Identities=30%  Similarity=0.500  Sum_probs=160.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...  .+++.++|++|++.+++.+|+.||+.+......   .....
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~  109 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSE  109 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHH
Confidence            59999999999999999998 7999999999987532  334569999999999999999999988654322   11223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++
T Consensus       110 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~  188 (220)
T cd03263         110 IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILT  188 (220)
T ss_pred             HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence            345788999999999888999999999999999999999999999999999999999999999999999876 5899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ||++. .+..+||++++|++ |+++..|+++++
T Consensus       189 sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~  219 (220)
T cd03263         189 THSMD-EAEALCDRIAIMSD-GKLRCIGSPQEL  219 (220)
T ss_pred             cCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHc
Confidence            99975 67889999999987 888888888764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=5e-48  Score=304.71  Aligned_cols=178  Identities=26%  Similarity=0.434  Sum_probs=155.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++.. ..++.++|++|++.+++.+|+.||+.+......   .......
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~  106 (210)
T cd03269          32 LGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEAR  106 (210)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHH
Confidence            59999999999999999988 799999999998754 345678999999999999999999988654321   1122345


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus       107 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH  186 (210)
T cd03269         107 RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH  186 (210)
T ss_pred             HHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            67889999999998889999999999999999999999999999999999999999999999999999877889999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      +.. .+.++||++++|.+ |++++.
T Consensus       187 ~~~-~~~~~~d~i~~l~~-g~i~~~  209 (210)
T cd03269         187 QME-LVEELCDRVLLLNK-GRAVLY  209 (210)
T ss_pred             CHH-HHHHhhhEEEEEeC-CEEEec
Confidence            974 67889999999987 887654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-48  Score=311.52  Aligned_cols=188  Identities=31%  Similarity=0.430  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC----
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM----   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~----   70 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...      .+++.++|+||++.+++.+||.||+.+......    
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  112 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR  112 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchh
Confidence            69999999999999999998 7999999999987531      134669999999999999999999986432100    


Q ss_pred             -CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          71 -DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        71 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                       ..........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  192 (243)
T TIGR02315       113 SLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN  192 (243)
T ss_pred             hhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence             0000112334678889999999988899999999999999999999999999999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++ +.|+|++||+.. .+.++||++++|++ |+++..|+++++
T Consensus       193 ~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~  233 (243)
T TIGR02315       193 KEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPSEL  233 (243)
T ss_pred             HHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHHHh
Confidence            64 889999999975 67889999999987 888888988775

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1e-47  Score=313.73  Aligned_cols=188  Identities=26%  Similarity=0.399  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|+++|+++...      ..++.++|++|++.+++.+||.||+.+......  ..
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~  115 (269)
T PRK11831         39 MGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QL  115 (269)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CC
Confidence            69999999999999999998 7999999999987531      124568999999999999999999988643211  11


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ........+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.
T Consensus       116 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~  195 (269)
T PRK11831        116 PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV  195 (269)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence            22233456788999999998899999999999999999999999999999999999999999999999999999765 88


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+|++||+.. .+..+||++++|++ |++++.|+++++.+
T Consensus       196 tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  233 (269)
T PRK11831        196 TCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQALQA  233 (269)
T ss_pred             EEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHHHHhc
Confidence            9999999974 78899999999987 89988999887754

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1e-47  Score=321.73  Aligned_cols=189  Identities=26%  Similarity=0.313  Sum_probs=163.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +|+||||||||+++|+|+++ |++|+|+++|+++...      .+++.++||||++  .++|.+||.+|+.+....+.. 
T Consensus        53 vG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-  130 (331)
T PRK15079         53 VGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-  130 (331)
T ss_pred             ECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-
Confidence            69999999999999999998 7999999999998532      2345799999997  588899999999986543211 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      .....+..+.+.++++.+++. +..++++.+|||||+||++|||||+.+|++||+||||++||+.++.+++++|++++++
T Consensus       131 ~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~  210 (331)
T PRK15079        131 KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE  210 (331)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence            122334556788999999995 5789999999999999999999999999999999999999999999999999999865


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       +.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus       211 ~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~~~i~~  251 (331)
T PRK15079        211 MGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTYDEVYH  251 (331)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHc
Confidence             899999999974 78889999999987 89999999988764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-48  Score=325.81  Aligned_cols=181  Identities=28%  Similarity=0.417  Sum_probs=161.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++..       ...++.++|+||++.+|+.+||+||+.+....     
T Consensus        30 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-----  103 (352)
T PRK11144         30 FGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK-----  103 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh-----
Confidence            59999999999999999998 799999999998742       12356799999999999999999999876421     


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                          ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +
T Consensus       104 ----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g  179 (352)
T PRK11144        104 ----SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN  179 (352)
T ss_pred             ----hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                12356889999999999999999999999999999999999999999999999999999999999999999865 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++||+.. ++..+||++++|++ |+++..|+++++..
T Consensus       180 ~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~i~~  218 (352)
T PRK11144        180 IPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLEEVWA  218 (352)
T ss_pred             CeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHHHHHh
Confidence            89999999974 78899999999987 89999999988764

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.1e-47  Score=310.24  Aligned_cols=188  Identities=27%  Similarity=0.382  Sum_probs=162.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----------cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...           ..++.++|++|++.+++.+|+.||+.++....
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  113 (250)
T PRK11264         35 IGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence            59999999999999999988 7999999999987421           23456899999999999999999998753211


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ..  .......+.+.++++.+++....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus       114 ~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  191 (250)
T PRK11264        114 KG--EPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA  191 (250)
T ss_pred             cC--CCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            11  1222344668889999999988899999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++.++|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       192 ~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  233 (250)
T PRK11264        192 QEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPAKALFA  233 (250)
T ss_pred             hcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence            77899999999974 68889999999987 88888899887653

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=9.9e-48  Score=303.54  Aligned_cols=180  Identities=28%  Similarity=0.392  Sum_probs=156.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+......   ......
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~  107 (213)
T cd03301          32 LGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEI  107 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999988 7999999999987532 223569999999999999999999988644321   122334


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ +.|+|++
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~  187 (213)
T cd03301         108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV  187 (213)
T ss_pred             HHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            567888999999998899999999999999999999999999999999999999999999999999999864 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      ||+.. .+..+||++++|++ |++++.|
T Consensus       188 sH~~~-~~~~~~d~i~~l~~-g~~~~~g  213 (213)
T cd03301         188 THDQV-EAMTMADRIAVMND-GQIQQIG  213 (213)
T ss_pred             eCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence            99974 78889999999987 8887654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3.6e-48  Score=304.58  Aligned_cols=172  Identities=35%  Similarity=0.435  Sum_probs=149.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++.....++.++|++|++. .++.+|+.||+.++.....       ..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~-------~~  103 (205)
T cd03226          32 TGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-------AG  103 (205)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC-------cc
Confidence            59999999999999999998 799999999998754344567999999974 3445799999987643221       11


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      .+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.++|++|
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s  183 (205)
T cd03226         104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT  183 (205)
T ss_pred             HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            24678999999999999999999999999999999999999999999999999999999999999999977789999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEE
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      |++. .+..+||++++|++ |++
T Consensus       184 H~~~-~~~~~~d~i~~l~~-G~i  204 (205)
T cd03226         184 HDYE-FLAKVCDRVLLLAN-GAI  204 (205)
T ss_pred             CCHH-HHHHhCCEEEEEEC-CEE
Confidence            9974 67889999999987 765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=7.3e-48  Score=305.97  Aligned_cols=185  Identities=27%  Similarity=0.390  Sum_probs=159.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|+||++.+++.+|+.||+.++.....     .
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~  105 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----R  105 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----c
Confidence            69999999999999999998 79999999999875321    23569999999999999999999988654321     1


Q ss_pred             HHHHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          77 LELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ....+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|+
T Consensus       106 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  185 (222)
T cd03224         106 AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTI  185 (222)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            12334567788888 57778899999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus       186 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  221 (222)
T cd03224         186 LLVEQNAR-FALEIADRAYVLER-GRVVLEGTAAELLA  221 (222)
T ss_pred             EEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCHHHHhc
Confidence            99999974 68899999999987 89988898887653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-47  Score=325.64  Aligned_cols=187  Identities=24%  Similarity=0.360  Sum_probs=163.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe----eCCc---cc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC----PISR---TV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~----~~~~---~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+    ++..   ..   . ++.++|+||++.+++.+||.||+.++....
T Consensus        56 ~G~nGsGKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~  134 (382)
T TIGR03415        56 MGLSGSGKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ  134 (382)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc
Confidence            69999999999999999998 79999999996    3322   11   1 246999999999999999999999875432


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .   .......+.+.++++.+||.+..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++++
T Consensus       135 g---~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~  211 (382)
T TIGR03415       135 G---MPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ  211 (382)
T ss_pred             C---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            1   1233445678999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++ ++|+|++||+.. ++.++||++++|++ |+++..|+++++..
T Consensus       212 ~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ei~~  254 (382)
T TIGR03415       212 AKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEEIVL  254 (382)
T ss_pred             HhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence            75 899999999975 78899999999988 88999999988753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.1e-47  Score=308.93  Aligned_cols=186  Identities=27%  Similarity=0.449  Sum_probs=161.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.+++.+||.||+.++.....   ....
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~  108 (242)
T cd03295          33 IGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKE  108 (242)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHH
Confidence            59999999999999999988 7999999999987532   234578999999999999999999988654321   1223


Q ss_pred             HHHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          78 ELNKTITRVMENLGINH--RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                      ...+.+.++++.+++..  ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.+
T Consensus       109 ~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~t  188 (242)
T cd03295         109 KIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT  188 (242)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence            34567889999999985  789999999999999999999999999999999999999999999999999999865 899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       189 vii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  224 (242)
T cd03295         189 IVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPDEIL  224 (242)
T ss_pred             EEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence            999999974 67899999999987 8888888887764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=6.5e-48  Score=307.41  Aligned_cols=183  Identities=29%  Similarity=0.417  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc-----CCCceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRV-----KGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~-----~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+|+|+|++     + |++|+|.++|+++...     .+++.++|++|++.++ .+||.||+.+......
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~  109 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG  109 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC
Confidence            5999999999999999998     6 7999999999987431     2346799999999888 7899999988654321


Q ss_pred             CccccHHHHHHHHHHHHHHcCCccccccc--CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHRRQVQ--ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .  .......+++.++++.+++.+..+++  +.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus       110 ~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  187 (227)
T cd03260         110 I--KLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL  187 (227)
T ss_pred             C--CcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            1  11112346788999999998777766  5999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      +++ .|+|++||+.. .+..+||++++|++ |++++.|++++
T Consensus       188 ~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~  226 (227)
T cd03260         188 KKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTEQ  226 (227)
T ss_pred             hhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCccc
Confidence            877 89999999974 78889999999987 88888888765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=8.9e-48  Score=303.50  Aligned_cols=179  Identities=34%  Similarity=0.507  Sum_probs=155.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...  .+++.++|++|++.+++.+||.||+.+......   .....
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~  106 (211)
T cd03264          31 LGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKE  106 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHH
Confidence            59999999999999999998 7999999999887532  235678999999999999999999988654321   11223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +.|+|++
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~v  185 (211)
T cd03264         107 VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILS  185 (211)
T ss_pred             HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            356788999999999888999999999999999999999999999999999999999999999999999976 5899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      ||+.. .+.++||++++|++ |+++..|
T Consensus       186 sH~~~-~~~~~~d~i~~l~~-g~i~~~g  211 (211)
T cd03264         186 THIVE-DVESLCNQVAVLNK-GKLVFEG  211 (211)
T ss_pred             cCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence            99974 67889999999987 8876543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=8e-48  Score=303.12  Aligned_cols=176  Identities=28%  Similarity=0.438  Sum_probs=154.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++.. ...++.++|++|++.+++.+||.||+.++.....   .    .
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~  103 (208)
T cd03268          32 LGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----R  103 (208)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----c
Confidence            59999999999999999998 799999999998753 2234568999999999999999999988654321   1    1


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      .+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.++|++|
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t  183 (208)
T cd03268         104 KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS  183 (208)
T ss_pred             HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            34678899999999889999999999999999999999999999999999999999999999999999987789999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      |+.. .+..+||++++|++ |++++.|
T Consensus       184 H~~~-~~~~~~d~v~~l~~-g~i~~~g  208 (208)
T cd03268         184 HLLS-EIQKVADRIGIINK-GKLIEEG  208 (208)
T ss_pred             CCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence            9974 67889999999987 8887643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-47  Score=315.33  Aligned_cols=186  Identities=28%  Similarity=0.368  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++..       ...++.+||+||++  .+++ .||.||+.|...... 
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~-  114 (288)
T PRK13643         38 IGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG-  114 (288)
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-
Confidence            59999999999999999998 799999999999742       12356799999986  5565 599999998754321 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        ....+..+++.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++
T Consensus       115 --~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~  192 (288)
T PRK13643        115 --IPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ  192 (288)
T ss_pred             --CCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence              12234456788999999996 578999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|.|||++||++. .+..+||++++|++ |++++.|++++++.
T Consensus       193 ~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~  233 (288)
T PRK13643        193 SGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTPSDVFQ  233 (288)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHc
Confidence            7899999999974 68899999999987 99999999988754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-47  Score=314.35  Aligned_cols=186  Identities=29%  Similarity=0.380  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++..       ...++.++|++|++  .++ .+||.||+.+...... 
T Consensus        39 iG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~-  115 (287)
T PRK13641         39 VGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG-  115 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC-
Confidence            69999999999999999998 799999999998742       12345699999997  345 5799999987643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .......+.+.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++
T Consensus       116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~  193 (287)
T PRK13641        116 --FSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK  193 (287)
T ss_pred             --CCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence              12233456788999999997 678999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|.|+|++||+.. .+.++||++++|++ |+++..|+++++..
T Consensus       194 ~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  234 (287)
T PRK13641        194 AGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPKEIFS  234 (287)
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            7899999999974 78899999999987 88988999887653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-47  Score=315.50  Aligned_cols=186  Identities=24%  Similarity=0.328  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|+++..       ...++.+||+||++  .++ ..||.||+.|...... 
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~-  115 (290)
T PRK13634         39 IGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG-  115 (290)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-
Confidence            59999999999999999998 799999999998742       12345799999986  455 4699999998654321 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .......+.+.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++
T Consensus       116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~  193 (290)
T PRK13634        116 --VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK  193 (290)
T ss_pred             --CCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence              12334456788999999997 668999999999999999999999999999999999999999999999999999976


Q ss_pred             C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + |.|||++||+.. .+..+|||+++|++ |++++.|++++++.
T Consensus       194 ~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~  235 (290)
T PRK13634        194 EKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPREIFA  235 (290)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            5 899999999975 78899999999987 99989999887653

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.3e-47  Score=301.83  Aligned_cols=178  Identities=32%  Similarity=0.396  Sum_probs=154.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..       ...++.++|++|++.+++.+|+.+|+.+.....    
T Consensus        29 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~----  103 (214)
T cd03297          29 FGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK----  103 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC----
Confidence            59999999999999999998 799999999998742       123456999999999999999999998764321    


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                       ......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ +
T Consensus       104 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  182 (214)
T cd03297         104 -RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN  182 (214)
T ss_pred             -CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence             11223456889999999998889999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      .|+|++||+.. .+..+||++++|++ |+++..|
T Consensus       183 ~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g  214 (214)
T cd03297         183 IPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG  214 (214)
T ss_pred             cEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence            89999999974 67889999999987 8877654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.7e-47  Score=302.35  Aligned_cols=173  Identities=29%  Similarity=0.442  Sum_probs=151.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...      .+++.++|++|++.+++.+|+.||+.+......   .
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~  109 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---K  109 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---C
Confidence            59999999999999999988 7999999999987531      234679999999999999999999998654321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t  189 (214)
T TIGR02673       110 KEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT  189 (214)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence            12234467889999999998889999999999999999999999999999999999999999999999999999777899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeC
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|++||++. ++..+||++++|++
T Consensus       190 ii~~tH~~~-~~~~~~d~i~~l~~  212 (214)
T TIGR02673       190 VIVATHDLS-LVDRVAHRVIILDD  212 (214)
T ss_pred             EEEEeCCHH-HHHHhcCEEEEecC
Confidence            999999974 78889999999986

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.9e-47  Score=301.61  Aligned_cols=179  Identities=27%  Similarity=0.387  Sum_probs=154.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+......  .. ....
T Consensus        30 ~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~  105 (211)
T cd03298          30 VGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAED  105 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHH
Confidence            59999999999999999998 7999999999987532 234569999999999999999999987543111  01 1233


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +.|+|++
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~  185 (211)
T cd03298         106 RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV  185 (211)
T ss_pred             HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            457889999999998899999999999999999999999999999999999999999999999999999764 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ||+.. .+.++||++++|++ |+++..
T Consensus       186 sH~~~-~~~~~~d~i~~l~~-G~i~~~  210 (211)
T cd03298         186 THQPE-DAKRLAQRVVFLDN-GRIAAQ  210 (211)
T ss_pred             ecCHH-HHHhhhCEEEEEEC-CEEeec
Confidence            99974 68899999999987 887654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2e-47  Score=301.90  Aligned_cols=175  Identities=32%  Similarity=0.448  Sum_probs=152.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...      ..++.++|++|++.+++.+|+.||+.++.....   .
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~  108 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---V  108 (214)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---C
Confidence            59999999999999999988 7999999999987531      234569999999999999999999998754321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t  188 (214)
T cd03292         109 PPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT  188 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence            22334567889999999998889999999999999999999999999999999999999999999999999999777899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      +|++||+.. .+..+||++++|++ |+
T Consensus       189 iiivtH~~~-~~~~~~d~i~~l~~-G~  213 (214)
T cd03292         189 VVVATHAKE-LVDTTRHRVIALER-GK  213 (214)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence            999999974 67889999999987 64

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-47  Score=311.90  Aligned_cols=185  Identities=26%  Similarity=0.309  Sum_probs=159.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...   ..++.++|+||++. .++.+||.||+.|......   ...
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~  112 (274)
T PRK13647         37 LGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG---LDK  112 (274)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC---CCH
Confidence            59999999999999999998 7999999999988532   23456999999963 4456799999987643221   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+++++++.|||
T Consensus       113 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~til  192 (274)
T PRK13647        113 DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVI  192 (274)
T ss_pred             HHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            33456788999999999889999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++||+.. .+.++||++++|++ |++++.|+++++
T Consensus       193 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~  225 (274)
T PRK13647        193 VATHDVD-LAAEWADQVIVLKE-GRVLAEGDKSLL  225 (274)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHh
Confidence            9999974 67889999999987 888888987643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-47  Score=305.91  Aligned_cols=188  Identities=25%  Similarity=0.394  Sum_probs=162.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|++|++.+++.+||.||+.+......  ....
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~  111 (241)
T PRK10895         35 LGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSA  111 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCH
Confidence            59999999999999999998 79999999999875321    34569999999999999999999987643221  1112


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ......+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.++++++++.|+|
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii  191 (241)
T PRK10895        112 EQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL  191 (241)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            23446788999999999888999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++||++. .+...||++++|++ |++++.|+++++..
T Consensus       192 i~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~  226 (241)
T PRK10895        192 ITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPTEILQ  226 (241)
T ss_pred             EEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHHHHhc
Confidence            9999974 68899999999987 88888999887643

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=2.8e-47  Score=304.67  Aligned_cols=185  Identities=26%  Similarity=0.331  Sum_probs=157.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++.....  ..+|++|++.+++.+||.||+.+....... ........
T Consensus        17 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~   92 (230)
T TIGR01184        17 IGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSKSERR   92 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc-CCCHHHHH
Confidence            59999999999999999998 799999999998754222  248999999999999999999886421111 11223344


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t  159 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|+|++|
T Consensus        93 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s  172 (230)
T TIGR01184        93 AIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT  172 (230)
T ss_pred             HHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            56889999999998899999999999999999999999999999999999999999999999999998765 88999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      |++. .+.++||++++|++ |+++..|++.++
T Consensus       173 H~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~  202 (230)
T TIGR01184       173 HDVD-EALLLSDRVVMLTN-GPAANIGQILEV  202 (230)
T ss_pred             CCHH-HHHHhcCEEEEEeC-CcEecccCceec
Confidence            9974 78899999999987 888777765443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=7e-47  Score=303.26  Aligned_cols=187  Identities=29%  Similarity=0.433  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...  ...+.++|++|++.+++.+|+.||+.+......   .....
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~  108 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAE  108 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHH
Confidence            59999999999999999998 7999999999987532  223568999999998889999999987654321   11223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii  157 (197)
                      ..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ ++.|+|+
T Consensus       109 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii  188 (236)
T TIGR03864       109 ARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLW  188 (236)
T ss_pred             HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            345678899999999889999999999999999999999999999999999999999999999999999975 5899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +||+.. .+. .||++++|++ |+++..|+++++...
T Consensus       189 ~sH~~~-~~~-~~d~i~~l~~-G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       189 ATHLVD-EIE-ADDRLVVLHR-GRVLADGAAAELRGA  222 (236)
T ss_pred             EecChh-hHh-hCCEEEEEeC-CeEEEeCCHHHHHHH
Confidence            999985 555 5999999987 888888998877654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-47  Score=312.67  Aligned_cols=186  Identities=21%  Similarity=0.322  Sum_probs=161.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...   ..++.++|++|++ .+++.+||.||+.|......   ...
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~  114 (279)
T PRK13650         39 IGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG---IPH  114 (279)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC---CCH
Confidence            59999999999999999998 7999999999998532   2446799999997 46777899999988643221   223


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.||
T Consensus       115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti  194 (279)
T PRK13650        115 EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTV  194 (279)
T ss_pred             HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            344567889999999999899999999999999999999999999999999999999999999999999999875 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       195 livtH~~~-~~-~~~dri~~l~~-G~i~~~g~~~~~~~  229 (279)
T PRK13650        195 ISITHDLD-EV-ALSDRVLVMKN-GQVESTSTPRELFS  229 (279)
T ss_pred             EEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHc
Confidence            99999975 55 58999999987 89988999887653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-47  Score=302.64  Aligned_cols=180  Identities=27%  Similarity=0.443  Sum_probs=154.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++....      . ++.++|++|++.+++.+|+.||+.+......   
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---  116 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---  116 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---
Confidence            59999999999999999988 79999999999875321      1 2569999999999999999999988654221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~  152 (197)
                      .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +|
T Consensus       117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g  196 (233)
T PRK11629        117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG  196 (233)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            11223456788999999999888999999999999999999999999999999999999999999999999999975 58


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      .|+|++||+.. .+.. +|++++|++ |+++..++
T Consensus       197 ~tvii~sH~~~-~~~~-~~~~~~l~~-G~i~~~~~  228 (233)
T PRK11629        197 TAFLVVTHDLQ-LAKR-MSRQLEMRD-GRLTAELS  228 (233)
T ss_pred             CEEEEEeCCHH-HHHh-hCEEEEEEC-CEEEEEec
Confidence            99999999975 5554 679999987 88877654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-47  Score=316.48  Aligned_cols=185  Identities=26%  Similarity=0.374  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------------------cccceEEEEecCC--CCCCCCCHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------------------VMSRISGYVAQQD--FLIEELTVL   59 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------------------~~~~~~~~v~q~~--~~~~~ltv~   59 (197)
                      +|+||||||||+++|+|+++ |++|+|+++|.++...                   .+++.++|++|++  .+++. ||.
T Consensus        58 ~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~  135 (320)
T PRK13631         58 IGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIE  135 (320)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHH
Confidence            59999999999999999998 7999999999887421                   2356799999987  46654 999


Q ss_pred             HHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235          60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA  138 (197)
Q Consensus        60 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~  138 (197)
                      ||+.|+.....   .......+++.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       136 eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~  212 (320)
T PRK13631        136 KDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE  212 (320)
T ss_pred             HHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence            99988643221   12234456788999999996 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ..+.++|+++++++.|||++||++. .+..+||++++|++ |+++..|++++++
T Consensus       213 ~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~~~~~  264 (320)
T PRK13631        213 HEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTPYEIF  264 (320)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence            9999999999877899999999974 67899999999988 8999999998764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-48  Score=309.83  Aligned_cols=181  Identities=29%  Similarity=0.421  Sum_probs=164.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      .|+||||||||+|+|+|+.+ |++|.|.+||.-+..       ..-+|++|||||+..+||.+||+.|+.|+....    
T Consensus        30 FG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~----  104 (352)
T COG4148          30 FGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS----  104 (352)
T ss_pred             ecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc----
Confidence            39999999999999999999 799999999987632       123578999999999999999999999976422    


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                           .....+++++.+|+.+.++++|..|||||||||+|+|||+..|++|+||||.++||..-+.+++-.|..++++ .
T Consensus       105 -----~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~  179 (352)
T COG4148         105 -----MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN  179 (352)
T ss_pred             -----chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence                 2456889999999999999999999999999999999999999999999999999999999999999999977 7


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ..|+.+||.+. ++.+++|++++|++ |++.+.|..++++.
T Consensus       180 IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e~v~~  218 (352)
T COG4148         180 IPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLEEVWG  218 (352)
T ss_pred             CCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHHHHhc
Confidence            79999999975 79999999999987 99999999998865

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=5.1e-47  Score=301.42  Aligned_cols=177  Identities=23%  Similarity=0.378  Sum_probs=153.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...      .+++.++|++|++.+++.+|+.||+.+......   .
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~  109 (222)
T PRK10908         34 TGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---A  109 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---C
Confidence            59999999999999999998 7999999999987431      134678999999998889999999988653321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.+
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  189 (222)
T PRK10908        110 SGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT  189 (222)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence            22233456788999999998889999999999999999999999999999999999999999999999999999777899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                      +|++||++. .+...||++++|++ |+++
T Consensus       190 iii~sH~~~-~~~~~~d~i~~l~~-G~i~  216 (222)
T PRK10908        190 VLMATHDIG-LISRRSYRMLTLSD-GHLH  216 (222)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence            999999974 78889999999987 7764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.7e-47  Score=304.90  Aligned_cols=186  Identities=27%  Similarity=0.453  Sum_probs=160.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +|+||||||||+|+|+|+++ |+     +|+|+++|+++..     ...++.++|+||++.+++ +|+.||+.+......
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~  110 (247)
T TIGR00972        33 IGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG  110 (247)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence            59999999999999999998 67     9999999998753     123467999999999888 899999998654321


Q ss_pred             CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ........+.+.++++.+++.    +..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|+
T Consensus       111 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  188 (247)
T TIGR00972       111 --IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ  188 (247)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence              012233456788999999997    67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++++ .|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus       189 ~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  232 (247)
T TIGR00972       189 ELKKK-YTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPTEQIFT  232 (247)
T ss_pred             HHHhc-CeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99764 89999999974 68899999999997 88888999887753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-47  Score=297.54  Aligned_cols=187  Identities=27%  Similarity=0.395  Sum_probs=162.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+||||||||||+|+|+.+ +.+|+|.++|++++..+    .+.-++||||...+|+.|||.|||.++.......    
T Consensus        35 lG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~----  109 (237)
T COG0410          35 LGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----  109 (237)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc----
Confidence            69999999999999999998 68999999999997542    3456899999999999999999999876543211    


Q ss_pred             HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                      ......++++.+.|. |.+..+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.++|++.|++++++ |.|
T Consensus       110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~t  189 (237)
T COG0410         110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMT  189 (237)
T ss_pred             ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcE
Confidence            111122778888885 788999999999999999999999999999999999999999999999999999999976 668


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+++.++. ..+.+++||.++|.+ |+++++|+.+++...
T Consensus       190 IlLVEQn~-~~Al~iaDr~yvle~-Griv~~G~~~eL~~~  227 (237)
T COG0410         190 ILLVEQNA-RFALEIADRGYVLEN-GRIVLSGTAAELLAD  227 (237)
T ss_pred             EEEEeccH-HHHHHhhCEEEEEeC-CEEEEecCHHHHhcC
Confidence            88887775 589999999999998 999999999987653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=7.9e-47  Score=306.56  Aligned_cols=187  Identities=27%  Similarity=0.378  Sum_probs=160.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------------TVMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +|+||||||||+++|+|+++ |++|+|+++|.++..                ..+++.++|++|++.+++.+|++||+.+
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~  115 (257)
T PRK10619         37 IGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME  115 (257)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHH
Confidence            59999999999999999998 799999999988742                1234579999999999999999999987


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN  143 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~  143 (197)
                      +.....  ........+++.++++.+++.+.. ++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+
T Consensus       116 ~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  193 (257)
T PRK10619        116 APIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR  193 (257)
T ss_pred             HHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            542111  112233456788999999998764 88999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +|++++++|.++|++||++. .+..+||++++|++ |++++.|+++++.
T Consensus       194 ~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  240 (257)
T PRK10619        194 IMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAPEQLF  240 (257)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHhh
Confidence            99999877899999999974 67889999999987 8888889888764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6e-47  Score=302.95  Aligned_cols=187  Identities=27%  Similarity=0.368  Sum_probs=161.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+|+.||+.+......  .. ....
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~  106 (232)
T PRK10771         31 LGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQ  106 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHH
Confidence            59999999999999999998 7999999999987532 223568999999999999999999987532111  01 1223


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.++|++++++ +.|+|++
T Consensus       107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~  186 (232)
T PRK10771        107 REKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV  186 (232)
T ss_pred             HHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            466889999999998899999999999999999999999999999999999999999999999999998764 8899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. .+.++||++++|++ |++++.|+++++..
T Consensus       187 sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~  219 (232)
T PRK10771        187 SHSLE-DAARIAPRSLVVAD-GRIAWDGPTDELLS  219 (232)
T ss_pred             ECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99974 67889999999987 88888898877654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-47  Score=312.18  Aligned_cols=186  Identities=27%  Similarity=0.386  Sum_probs=159.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...       ..++.+||+||++  .+++ .||.||+.|...... 
T Consensus        39 ~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-  115 (286)
T PRK13646         39 VGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-  115 (286)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-
Confidence            59999999999999999998 7999999999987431       2456799999986  4555 499999998653321 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .......+.+.++++.+||. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++
T Consensus       116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~  193 (286)
T PRK13646        116 --MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT  193 (286)
T ss_pred             --CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence              12334456788999999997 678899999999999999999999999999999999999999999999999999976


Q ss_pred             C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + |.|||++||+.. .+..+||++++|++ |++++.|++++++.
T Consensus       194 ~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~  235 (286)
T PRK13646        194 DENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSPKELFK  235 (286)
T ss_pred             hCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            4 899999999974 67889999999987 89989999987654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=3.1e-47  Score=300.57  Aligned_cols=176  Identities=29%  Similarity=0.434  Sum_probs=152.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..     ...++.++|++|++.+++.+|+.||+.++.....  ...
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~  108 (213)
T cd03262          32 IGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMS  108 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCC
Confidence            59999999999999999998 799999999998742     1235679999999999999999999988643111  111


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++++.|+
T Consensus       109 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tv  188 (213)
T cd03262         109 KAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM  188 (213)
T ss_pred             HHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence            22344678889999999988999999999999999999999999999999999999999999999999999998778899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      |++||++. .+.++||++++|++ |+
T Consensus       189 i~~sh~~~-~~~~~~d~i~~l~~-g~  212 (213)
T cd03262         189 VVVTHEMG-FAREVADRVIFMDD-GR  212 (213)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence            99999974 68899999999987 64

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7e-47  Score=306.32  Aligned_cols=189  Identities=27%  Similarity=0.343  Sum_probs=160.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------   70 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .+..++|+||++.+++.+||.||+.+......      
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~  115 (255)
T PRK11300         37 IGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFS  115 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhh
Confidence            59999999999999999988 79999999999875321    22348999999999999999999998532110      


Q ss_pred             ----Cc--cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          71 ----DR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        71 ----~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                          ..  ........+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  195 (255)
T PRK11300        116 GLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL  195 (255)
T ss_pred             hhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence                00  001112335678899999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |++++++ +.|||++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       196 L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~  242 (255)
T PRK11300        196 IAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPEEIR  242 (255)
T ss_pred             HHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHHHHh
Confidence            9999875 889999999974 78899999999987 8888889888764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.2e-46  Score=300.19  Aligned_cols=185  Identities=42%  Similarity=0.689  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|++++  |++|+|.++|.++....+++.++|++|++.+++.+||.||+.+..............
T Consensus        39 ~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  118 (226)
T cd03234          39 LGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI  118 (226)
T ss_pred             ECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHH
Confidence            599999999999999999862  589999999998865445677999999999999999999999865432111111112


Q ss_pred             HHHHHHH-HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITR-VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ....+.+ +++.+++.+..++.+.+||+||+||++|||||+.+|++|||||||+|||+.++..+.++|+++++++.|+|+
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii  198 (226)
T cd03234         119 RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL  198 (226)
T ss_pred             HHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            2234555 899999988889999999999999999999999999999999999999999999999999999877889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      +||+..+.+.++||++++|++ |++++.|
T Consensus       199 ~sh~~~~~~~~~~d~i~~l~~-G~i~~~g  226 (226)
T cd03234         199 TIHQPRSDLFRLFDRILLLSS-GEIVYSG  226 (226)
T ss_pred             EecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence            999973368899999999987 8887654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3.7e-47  Score=299.84  Aligned_cols=173  Identities=32%  Similarity=0.441  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.++|++|++. .++.+|+.||+.+......   ...
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~---~~~  108 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG---LPE  108 (211)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC---CCH
Confidence            59999999999999999998 7999999999987532   23467899999975 3667899999987643221   112


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.++|
T Consensus       109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi  188 (211)
T cd03225         109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII  188 (211)
T ss_pred             HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence            23345688899999999888999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeC
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~  178 (197)
                      ++||+.. .+..+||++++|++
T Consensus       189 ~~sH~~~-~~~~~~d~i~~l~~  209 (211)
T cd03225         189 IVTHDLD-LLLELADRVIVLED  209 (211)
T ss_pred             EEeCCHH-HHHHhCCEEEEEeC
Confidence            9999974 78888999999987

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.8e-47  Score=303.95  Aligned_cols=186  Identities=27%  Similarity=0.337  Sum_probs=159.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---------ccccceEEEEecCCCCCCCCCHHHHHHHHH-HccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---------TVMSRISGYVAQQDFLIEELTVLEHLQFMA-KLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~~   70 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|.++..         ...++.++|++|++.+++.+|+.||+.++. ....
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~  112 (242)
T PRK11124         34 LGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG  112 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC
Confidence            59999999999999999988 799999999998631         123456899999999999999999997532 2111


Q ss_pred             CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                         .......+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|+++++
T Consensus       113 ---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~  189 (242)
T PRK11124        113 ---LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE  189 (242)
T ss_pred             ---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH
Confidence               11223345788999999999889999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++.|+|++||+.. .+..+||++++|.+ |++++.|+++++.
T Consensus       190 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~  229 (242)
T PRK11124        190 TGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDASCFT  229 (242)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHhc
Confidence            7899999999974 67789999999987 8888889887753

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-46  Score=315.03  Aligned_cols=188  Identities=23%  Similarity=0.289  Sum_probs=163.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +|+||||||||+++|+|+++ |++|+|.++|+++...      .+++.++||||++  .+++.+|+.+++.+....+.  
T Consensus        47 vG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--  123 (327)
T PRK11308         47 VGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--  123 (327)
T ss_pred             ECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--
Confidence            69999999999999999998 7999999999998532      2345799999997  58899999999987654331  


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ........+++.++++.+||. ...++++.+||||||||++|||||+.+|++||+||||++||+.++.+++++|++++++
T Consensus       124 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~  203 (327)
T PRK11308        124 SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE  203 (327)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence            112334556789999999996 4679999999999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       |.|+|++|||.. .+.++||++++|.+ |++++.|+++++++
T Consensus       204 ~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~~~~~  244 (327)
T PRK11308        204 LGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKEQIFN  244 (327)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence             899999999974 77889999999987 99999999988765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.2e-46  Score=302.84  Aligned_cols=188  Identities=26%  Similarity=0.388  Sum_probs=160.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-----
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-----   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----   71 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|++|++.+++.+||.||+.++......     
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~  112 (242)
T TIGR03411        34 IGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL  112 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccccccc
Confidence            59999999999999999988 79999999999875321    234699999999999999999999886432100     


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      .........+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|+++++ 
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-  191 (242)
T TIGR03411       113 FFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-  191 (242)
T ss_pred             ccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-
Confidence            0011123456788999999999888999999999999999999999999999999999999999999999999999976 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +.|+|++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus       192 ~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~~~~  230 (242)
T TIGR03411       192 KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLDQVQ  230 (242)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHHHHh
Confidence            689999999974 68889999999987 8888889888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-47  Score=303.15  Aligned_cols=184  Identities=23%  Similarity=0.368  Sum_probs=158.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|++|++.+++.+||.||+.+.....     ..
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~  110 (237)
T PRK11614         37 IGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ER  110 (237)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----Ch
Confidence            59999999999999999998 79999999999875421    3456999999999999999999998754211     11


Q ss_pred             HHHHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          77 LELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ....+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|+
T Consensus       111 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  190 (237)
T PRK11614        111 DQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI  190 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            12334567778887 57777788999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |++||++. ++.++||++++|++ |++++.|+++++.
T Consensus       191 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  225 (237)
T PRK11614        191 FLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGDALL  225 (237)
T ss_pred             EEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence            99999974 78899999999987 8999999998775

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=8.8e-47  Score=299.67  Aligned_cols=176  Identities=30%  Similarity=0.474  Sum_probs=150.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MS-RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++....      ++ +.++|++|++.+++.+|++||+.+......   
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---  112 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---  112 (221)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---
Confidence            69999999999999999998 79999999999875321      12 568999999999999999999988643221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      .......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +
T Consensus       113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~  192 (221)
T TIGR02211       113 KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN  192 (221)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            112233456789999999998899999999999999999999999999999999999999999999999999999764 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                      .|+|++||+.. .+ ..||++++|++ |+++
T Consensus       193 ~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~  220 (221)
T TIGR02211       193 TSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF  220 (221)
T ss_pred             CEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence            89999999975 55 45899999987 7764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.1e-46  Score=300.30  Aligned_cols=182  Identities=25%  Similarity=0.340  Sum_probs=151.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++...      .+++.++|++|++  .+++.+||++|+.+........
T Consensus        37 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~  115 (228)
T cd03257          37 VGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL  115 (228)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC
Confidence            59999999999999999988 7999999999987532      2346799999998  5677899999998764432111


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                       .........+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++
T Consensus       116 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  194 (228)
T cd03257         116 -SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE  194 (228)
T ss_pred             -cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence             11111122235789999995 6789999999999999999999999999999999999999999999999999999876


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                       +.|||++||+.. .+..+||++++|++ |+++..|
T Consensus       195 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g  228 (228)
T cd03257         195 LGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG  228 (228)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence             899999999974 67789999999987 8876543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-46  Score=304.90  Aligned_cols=180  Identities=27%  Similarity=0.378  Sum_probs=155.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...  ...++|++|++.+++.+||.||+.+......   .......
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~  106 (255)
T PRK11248         33 LGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRL  106 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHH
Confidence            59999999999999999998 7999999999987532  2458999999999998999999987643221   1222334


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++ ++.|+|++|
T Consensus       107 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs  186 (255)
T PRK11248        107 EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT  186 (255)
T ss_pred             HHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            6788999999999888999999999999999999999999999999999999999999999999999854 589999999


Q ss_pred             cCCcchHHhhcCeEEEEeC-CcEEEEecC
Q psy4235         160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQ  187 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~  187 (197)
                      |++. .+..+||++++|++ +|+++..++
T Consensus       187 H~~~-~~~~~~d~i~~l~~~~G~i~~~~~  214 (255)
T PRK11248        187 HDIE-EAVFMATELVLLSPGPGRVVERLP  214 (255)
T ss_pred             CCHH-HHHHhCCEEEEEeCCCcEEEEEec
Confidence            9974 78899999999984 488877654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-46  Score=308.87  Aligned_cols=186  Identities=28%  Similarity=0.359  Sum_probs=158.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..       ..+++.++|++|++  .+++ .||.||+.+...... 
T Consensus        39 ~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~-  115 (280)
T PRK13649         39 IGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG-  115 (280)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC-
Confidence            59999999999999999998 799999999998743       12345689999996  4555 699999987643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .......+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++
T Consensus       116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  193 (280)
T PRK13649        116 --VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ  193 (280)
T ss_pred             --CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence              12223445678899999997 467999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.|||++||++. .+..+||++++|++ |+++..|+++++..
T Consensus       194 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  234 (280)
T PRK13649        194 SGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPKDIFQ  234 (280)
T ss_pred             CCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            7899999999974 78899999999987 88888898887644

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=4.5e-47  Score=299.88  Aligned_cols=177  Identities=29%  Similarity=0.428  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccCC-ccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTMD-RRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++.  ..++.++|++|++.++  +.+||.||+.+....... ......
T Consensus        31 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  107 (213)
T cd03235          31 VGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK  107 (213)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCH
Confidence            59999999999999999988 79999999998764  2456799999998763  347999999875432110 000112


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|+
T Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~  187 (213)
T cd03235         108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV  187 (213)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            33467889999999998889999999999999999999999999999999999999999999999999999877899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEE
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      +||+.. .+.++||++++|++ |.+
T Consensus       188 ~sH~~~-~~~~~~d~i~~l~~-~~~  210 (213)
T cd03235         188 VTHDLG-LVLEYFDRVLLLNR-TVV  210 (213)
T ss_pred             EeCCHH-HHHHhcCEEEEEcC-cEe
Confidence            999974 68899999999976 644

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-46  Score=297.06  Aligned_cols=181  Identities=27%  Similarity=0.365  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+|+.||+.+.......   .....
T Consensus        30 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~---~~~~~  105 (213)
T TIGR01277        30 MGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK---LNAEQ  105 (213)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC---ccHHH
Confidence            59999999999999999998 7999999999987532 3456799999999999999999999875432111   11123


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||++||+.++..+.++|++++++ +.|+|++
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v  185 (213)
T TIGR01277       106 QEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV  185 (213)
T ss_pred             HHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            456788999999998899999999999999999999999999999999999999999999999999999765 8899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      ||+.. .+.++||++++|++ |+++..|+
T Consensus       186 sh~~~-~~~~~~d~v~~l~~-g~i~~~~~  212 (213)
T TIGR01277       186 THHLS-DARAIASQIAVVSQ-GKIKVVSD  212 (213)
T ss_pred             eCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence            99974 67889999999987 88887764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-46  Score=303.45  Aligned_cols=188  Identities=26%  Similarity=0.393  Sum_probs=161.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----------------cccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----------------VMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----------------~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...                .+++.++|++|++.+++.+|+.||+.+
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~  110 (252)
T TIGR03005        32 IGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE  110 (252)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH
Confidence            59999999999999999998 7999999999987421                234679999999999999999999987


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      ......  ........+.+.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.
T Consensus       111 ~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~  188 (252)
T TIGR03005       111 APVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV  188 (252)
T ss_pred             HHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            532111  111223445688999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++++++ +.|+|++||++. .+..+||++++|++ |++++.|+++++..
T Consensus       189 l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  236 (252)
T TIGR03005       189 IRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPDEIFR  236 (252)
T ss_pred             HHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence            9999765 899999999975 67889999999987 89988898887653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-47  Score=289.05  Aligned_cols=188  Identities=28%  Similarity=0.367  Sum_probs=165.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------c------cccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------T------VMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------~------~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      ||.|||||||+||||+-+.. |+.|.|+++|+.+..          .      .++.+.++|||+.+++..|||.||+..
T Consensus        38 IGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViE  116 (256)
T COG4598          38 IGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE  116 (256)
T ss_pred             ecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHh
Confidence            69999999999999987766 799999999998731          0      123457999999999999999999986


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      ....-  ...+..+..+++..+|..+|+.+..+.+|..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.
T Consensus       117 aPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv  194 (256)
T COG4598         117 APVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV  194 (256)
T ss_pred             cchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHH
Confidence            53211  1223455677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         145 LKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       145 l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++++++|+|.+++||.+ .++...+..++++++ |.|.++|+|++++.
T Consensus       195 ~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~-G~iEE~G~P~qvf~  241 (256)
T COG4598         195 MQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQ-GKIEEEGPPEQVFG  241 (256)
T ss_pred             HHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeec-ceecccCChHHHhc
Confidence            999999999999999997 589999999999987 99999999998874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-46  Score=302.24  Aligned_cols=188  Identities=29%  Similarity=0.418  Sum_probs=159.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|++++    |++|+|.++|.++..   ..+++.++|++|++.+++.+||.||+.+....... .
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~  113 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-V  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-c
Confidence            599999999999999999873    379999999998753   23456799999999889999999999886532211 0


Q ss_pred             ccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          74 TTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~  193 (250)
T PRK14247        114 KSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK  193 (250)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence            11233456788999999985    35788999999999999999999999999999999999999999999999999986


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      + +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus       194 ~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  233 (250)
T PRK14247        194 K-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTREVF  233 (250)
T ss_pred             c-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHHHHH
Confidence            4 789999999974 67889999999987 8898889988765

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-46  Score=312.84  Aligned_cols=189  Identities=22%  Similarity=0.291  Sum_probs=161.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC---CceeEEEECCeeCCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG---LVQGEILLNGCPISRT---V----MSRISGYVAQQD--FLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~---~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~   68 (197)
                      +|+||||||||+++|+|++++   +++|+|.++|+++...   .    .++.++|+||++  .++|.+|+.+++......
T Consensus        39 vG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~  118 (326)
T PRK11022         39 VGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV  118 (326)
T ss_pred             ECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH
Confidence            699999999999999999873   3799999999997532   1    123699999997  578999999998776543


Q ss_pred             cCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          69 TMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                      +..  ....+..+++.++++.++|.+   ..++++.+|||||||||+|||||+.+|++||+||||++||+.++.+++++|
T Consensus       119 ~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL  196 (326)
T PRK11022        119 HQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL  196 (326)
T ss_pred             hcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            211  123345677899999999963   568899999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         146 KQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       146 ~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++++ .|.|+|++|||.. .+.++||++++|.+ |++++.|++++++.
T Consensus       197 ~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~~~~~~  243 (326)
T PRK11022        197 LELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKAHDIFR  243 (326)
T ss_pred             HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhh
Confidence            99986 4899999999974 67889999999987 99999999988864

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-46  Score=307.27  Aligned_cols=187  Identities=29%  Similarity=0.423  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+||||||||+|+|+|+++ |++|+|+++|.++...   ..++.++|++|++. .+...||.||+.+......   ...
T Consensus        36 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~  111 (277)
T PRK13652         36 IGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG---LDE  111 (277)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC---CCH
Confidence            59999999999999999998 7999999999987532   33457899999974 3445799999987643221   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.|+
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tv  191 (277)
T PRK13652        112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV  191 (277)
T ss_pred             HHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            334567889999999998899999999999999999999999999999999999999999999999999999875 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+.+.||++++|++ |++++.|+++++++
T Consensus       192 li~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~  227 (277)
T PRK13652        192 IFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVEEIFL  227 (277)
T ss_pred             EEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHHHHhc
Confidence            99999974 67899999999987 88889999988754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=2.3e-46  Score=299.31  Aligned_cols=187  Identities=26%  Similarity=0.312  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCcccc-cceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVM-SRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |    ++|+|+++|+++..... ++.++|++|++.  +++.+|+.+|+.+.......  
T Consensus        18 ~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~--   94 (230)
T TIGR02770        18 VGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK--   94 (230)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCc--
Confidence            59999999999999999998 6    89999999998854333 356999999984  56778999999875432211  


Q ss_pred             ccHHHHHHHHHHHHHHcCCc---ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          74 TTWLELNKTITRVMENLGIN---HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                       ......+.+.++++.+++.   +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus        95 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~  173 (230)
T TIGR02770        95 -LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ  173 (230)
T ss_pred             -cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence             1123346788999999997   567899999999999999999999999999999999999999999999999999986


Q ss_pred             C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       174 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  215 (230)
T TIGR02770       174 LFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVKEIFY  215 (230)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            4 889999999974 78889999999987 89988999988753

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-46  Score=306.44  Aligned_cols=187  Identities=25%  Similarity=0.387  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCCC-CCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFL-IEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...     ..++.++|++|++.+ +...|+.+|+.+......   .
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~  108 (271)
T PRK13638         33 VGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---V  108 (271)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---C
Confidence            59999999999999999998 7999999999987421     234569999999753 344589999987643321   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.|
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t  188 (271)
T PRK13638        109 PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH  188 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            22233456788999999998889999999999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       189 ii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  225 (271)
T PRK13638        189 VIISSHDID-LIYEISDAVYVLRQ-GQILTHGAPGEVFA  225 (271)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            999999974 67899999999987 88888999887653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=2e-46  Score=305.57  Aligned_cols=188  Identities=22%  Similarity=0.274  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...      .+++.++|++|++  .+++.+||.||+.+......  
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--  119 (265)
T TIGR02769        43 LGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--  119 (265)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--
Confidence            59999999999999999998 7999999999987532      1345699999997  46778999999987543211  


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ........+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++
T Consensus       120 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~  199 (265)
T TIGR02769       120 SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA  199 (265)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            111223446788999999996 6789999999999999999999999999999999999999999999999999999865


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       +.|||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       200 ~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  240 (265)
T TIGR02769       200 FGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVAQLLS  240 (265)
T ss_pred             cCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHHHHcC
Confidence             899999999974 77889999999987 89999999988764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-46  Score=308.67  Aligned_cols=187  Identities=30%  Similarity=0.408  Sum_probs=160.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..     ..+++.++|+||++. .+...||.||+.+......   .
T Consensus        38 ~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~  113 (283)
T PRK13636         38 LGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK---L  113 (283)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC---C
Confidence            59999999999999999998 799999999998741     124567999999973 3345799999988643221   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |.
T Consensus       114 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~  193 (283)
T PRK13636        114 PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL  193 (283)
T ss_pred             CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence            22334567889999999999999999999999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+++||++. .+..+||++++|++ |++++.|+++++..
T Consensus       194 tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~  231 (283)
T PRK13636        194 TIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKEVFA  231 (283)
T ss_pred             EEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            9999999974 67789999999988 88999999988754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=304.65  Aligned_cols=186  Identities=30%  Similarity=0.392  Sum_probs=159.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...   .+++.++|++|++.+++.+||.||+.+......   ....
T Consensus        34 ~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~  109 (258)
T PRK13548         34 LGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRA  109 (258)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcH
Confidence            59999999999999999988 7999999999987532   234568999999988888999999988643211   1112


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL------TEPQILFCDEPTTGLDSYSANNVVNLLKQLA-C  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~  150 (197)
                      ...+.+.++++.+++.+..++.+.+||||||||++|||||+      .+|++|||||||++||+.++..+.++|++++ +
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  189 (258)
T PRK13548        110 EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE  189 (258)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            23456788999999998899999999999999999999999      5999999999999999999999999999997 5


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++.|||++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus       190 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  229 (258)
T PRK13548        190 RGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPAEVL  229 (258)
T ss_pred             cCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHHHHh
Confidence            6899999999974 68889999999987 8888888887764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=307.21  Aligned_cols=186  Identities=27%  Similarity=0.382  Sum_probs=159.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++..    ...++.++|++|++. .+...|+.||+.+......   ..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~  109 (274)
T PRK13644         34 IGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC---LP  109 (274)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC---CC
Confidence            59999999999999999998 799999999998853    123467999999975 4666899999987653321   12


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++++.+++.+..++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+
T Consensus       110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~ti  189 (274)
T PRK13644        110 PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI  189 (274)
T ss_pred             HHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence            33445678899999999999999999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+ ..||++++|++ |++++.|+++++..
T Consensus       190 l~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~  224 (274)
T PRK13644        190 VYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPENVLS  224 (274)
T ss_pred             EEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            99999975 55 56999999987 88888899887643

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=307.95  Aligned_cols=186  Identities=25%  Similarity=0.330  Sum_probs=160.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|+||++ .+++..||.||+.+......   ...
T Consensus        39 ~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~  114 (279)
T PRK13635         39 VGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPR  114 (279)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCH
Confidence            59999999999999999998 7999999999998542   2346799999997 36777899999988654321   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.||
T Consensus       115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~ti  194 (279)
T PRK13635        115 EEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITV  194 (279)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence            344567899999999999999999999999999999999999999999999999999999999999999999876 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+. .||+++++++ |++++.|+++++..
T Consensus       195 livsH~~~-~~~-~~d~i~~l~~-G~i~~~g~~~~~~~  229 (279)
T PRK13635        195 LSITHDLD-EAA-QADRVIVMNK-GEILEEGTPEEIFK  229 (279)
T ss_pred             EEEecCHH-HHH-cCCEEEEEEC-CEEEEECCHHHHhc
Confidence            99999975 555 5999999987 88888999887653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-46  Score=304.64  Aligned_cols=189  Identities=28%  Similarity=0.409  Sum_probs=160.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC-CccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~   76 (197)
                      +|+||||||||+++|+|+++ |++|+|.++|.++..   ...++.++|+||++.+++.+|+.||+.++..... ......
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~  112 (255)
T PRK11231         34 IGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS  112 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCC
Confidence            59999999999999999988 799999999998743   2234568999999998888999999987521100 000011


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++.+..++++.+|||||+||++||||++.+|++|||||||+|||+.++..+.+.|+++++++.|+|
T Consensus       113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tii  192 (255)
T PRK11231        113 AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV  192 (255)
T ss_pred             HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            22345678899999999889999999999999999999999999999999999999999999999999999977789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++||++. .+.++||++++|++ |+++..|+++++.
T Consensus       193 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  226 (255)
T PRK11231        193 TVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPEEVM  226 (255)
T ss_pred             EEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHHHhc
Confidence            9999974 78899999999987 8888888887664

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-46  Score=302.56  Aligned_cols=186  Identities=23%  Similarity=0.393  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+++|+|+.++    |++|+|.++|.++...     ..++.++|++|++.+++ +|+.||+.+...... 
T Consensus        44 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-  121 (258)
T PRK14268         44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG-  121 (258)
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-
Confidence            599999999999999999873    3799999999987421     23456999999998888 899999998653321 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus       122 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  199 (258)
T PRK14268        122 --ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN  199 (258)
T ss_pred             --CCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence              12223345678899999883    457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       200 l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  242 (258)
T PRK14268        200 LKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQTRQIFH  242 (258)
T ss_pred             Hhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            864 789999999974 67889999999987 89999999988753

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=4.4e-46  Score=297.04  Aligned_cols=177  Identities=31%  Similarity=0.431  Sum_probs=152.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++....      . ++.++|++|++.+++.+|+.||+.+......   
T Consensus        42 ~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---  117 (228)
T PRK10584         42 IGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---  117 (228)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---
Confidence            59999999999999999988 79999999999875321      1 2469999999999999999999987643221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ +
T Consensus       118 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  197 (228)
T PRK10584        118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG  197 (228)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            112234567889999999998889999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      .|||++||+.. .+ ..||++++|++ |++++
T Consensus       198 ~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~  226 (228)
T PRK10584        198 TTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE  226 (228)
T ss_pred             CEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence            89999999975 55 55999999987 77754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-46  Score=305.58  Aligned_cols=189  Identities=25%  Similarity=0.335  Sum_probs=160.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+++.+|+.||+.+....... .....
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  121 (265)
T PRK10575         43 IGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFG  121 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCC
Confidence            59999999999999999988 799999999998743   23345699999998888999999999875321100 00011


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.++
T Consensus       122 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~ti  201 (265)
T PRK10575        122 AADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTV  201 (265)
T ss_pred             HHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            223456889999999998889999999999999999999999999999999999999999999999999999765 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |++||++. .+.++||++++|++ |+++..|+++++.
T Consensus       202 ii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~~~~  236 (265)
T PRK10575        202 IAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPAELM  236 (265)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHHHhc
Confidence            99999975 78899999999987 8888888887764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-46  Score=311.67  Aligned_cols=191  Identities=16%  Similarity=0.218  Sum_probs=159.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC---CceeEEEECCeeCCcc---c----ccceEEEEecCCC--CCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG---LVQGEILLNGCPISRT---V----MSRISGYVAQQDF--LIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~---~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~   68 (197)
                      +|+||||||||+++|+|+.++   +++|+|+|+|+++...   .    .++.++||||++.  +++.+||.+++.+....
T Consensus        39 vG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~  118 (330)
T PRK15093         39 VGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPG  118 (330)
T ss_pred             ECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHh
Confidence            699999999999999999863   4799999999987532   1    1246999999975  67889999999864321


Q ss_pred             cCCcc---ccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235          69 TMDRR---TTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV  142 (197)
Q Consensus        69 ~~~~~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~  142 (197)
                      .....   .......+.+.++++.++|.+   ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~  198 (330)
T PRK15093        119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF  198 (330)
T ss_pred             hhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH
Confidence            10000   011233467889999999974   468899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         143 NLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       143 ~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++|++++++ |.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus       199 ~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~~~i~~  248 (330)
T PRK15093        199 RLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPSKELVT  248 (330)
T ss_pred             HHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            999999875 899999999974 78899999999987 99999999988764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-46  Score=304.66  Aligned_cols=186  Identities=24%  Similarity=0.351  Sum_probs=159.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|.++...   .+++.++|++|++. .++.+||.||+.+......   ...
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~  116 (271)
T PRK13632         41 LGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPP  116 (271)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC---CCH
Confidence            59999999999999999998 7999999999998532   34567999999974 6777899999988643221   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ......+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|++++++ +.|+
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti  196 (271)
T PRK13632        117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL  196 (271)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence            334456889999999999999999999999999999999999999999999999999999999999999999866 4899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+ ..||++++|++ |+++..|+++++..
T Consensus       197 ii~sH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~  231 (271)
T PRK13632        197 ISITHDMD-EA-ILADKVIVFSE-GKLIAQGKPKEILN  231 (271)
T ss_pred             EEEEechh-HH-hhCCEEEEEEC-CEEEEecCHHHHhc
Confidence            99999985 55 47999999987 88888888877643

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-46  Score=305.21  Aligned_cols=187  Identities=30%  Similarity=0.416  Sum_probs=160.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...     .+++.++|++|++. .+..+||.||+.+......   .
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~---~  109 (275)
T PRK13639         34 LGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG---L  109 (275)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---C
Confidence            59999999999999999998 7999999999987421     23467999999963 3344699999987543211   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|
T Consensus       110 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~t  189 (275)
T PRK13639        110 SKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGIT  189 (275)
T ss_pred             CHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence            22334567889999999999999999999999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++||+.. .+..+||++++|++ |+++..|++++++.
T Consensus       190 il~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  226 (275)
T PRK13639        190 IIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPKEVFS  226 (275)
T ss_pred             EEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            999999974 67889999999988 88888999988753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=5.7e-46  Score=311.12  Aligned_cols=188  Identities=26%  Similarity=0.301  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcc---c---cc-ceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---V---MS-RISGYVAQQD--FLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~---~---~~-~~~~~v~q~~--~~~~~ltv~e~l~~~~~~   68 (197)
                      +|+||||||||+++|+|+++ |+   +|+|.++|+++...   .   ++ +.++||||++  .++|.+|+.+++.+....
T Consensus        48 vG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~  126 (330)
T PRK09473         48 VGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML  126 (330)
T ss_pred             ECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH
Confidence            69999999999999999998 54   99999999998532   1   12 4699999997  688999999999876543


Q ss_pred             cCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          69 TMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                      +.  .....+..+++.++++.++|.+   ..++++.+|||||+||++|||||+.+|++||+||||++||+.++..++++|
T Consensus       127 ~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL  204 (330)
T PRK09473        127 HK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL  204 (330)
T ss_pred             hc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            31  1123344567889999999964   357899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++++++ +.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus       205 ~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~~i~~  251 (330)
T PRK09473        205 NELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNARDVFY  251 (330)
T ss_pred             HHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            999875 899999999975 67889999999987 99999999998864

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-46  Score=304.65  Aligned_cols=189  Identities=27%  Similarity=0.363  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++...   ..++.++|+||++.+++.+|+.||+.+....... .....
T Consensus        39 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~  117 (265)
T PRK10253         39 IGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR  117 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCC
Confidence            59999999999999999988 7999999999987532   2345689999999999989999999874211100 00011


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ......+.++++.+++.+..++++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|++++++ +.|+
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~ti  197 (265)
T PRK10253        118 KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL  197 (265)
T ss_pred             HHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            223456789999999998899999999999999999999999999999999999999999999999999999764 8899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |++||++. .+.++||++++|++ |+++..|+++++.
T Consensus       198 ii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  232 (265)
T PRK10253        198 AAVLHDLN-QACRYASHLIALRE-GKIVAQGAPKEIV  232 (265)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence            99999974 78999999999987 8888889988764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-46  Score=303.68  Aligned_cols=174  Identities=25%  Similarity=0.359  Sum_probs=153.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++.  .+++.++|++|++.+++.+||.||+.+...     .    ...
T Consensus        44 ~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~  111 (257)
T PRK11247         44 VGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWR  111 (257)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHH
Confidence            59999999999999999998 79999999998763  234668999999999998999999987521     0    123


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      ..+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++ .+.|+|++|
T Consensus       112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs  191 (257)
T PRK11247        112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT  191 (257)
T ss_pred             HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            5678899999999889999999999999999999999999999999999999999999999999999865 488999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQV  188 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~  188 (197)
                      |+.. .+..+||++++|++ |+++..++.
T Consensus       192 Hd~~-~~~~~~d~i~~l~~-G~i~~~~~~  218 (257)
T PRK11247        192 HDVS-EAVAMADRVLLIEE-GKIGLDLTV  218 (257)
T ss_pred             CCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence            9974 67889999999987 888776654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-46  Score=330.57  Aligned_cols=189  Identities=20%  Similarity=0.288  Sum_probs=161.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+++| |++|+|+++|.++....    .++.++|++|++.+++.+||.||+.++..........
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  116 (506)
T PRK13549         37 CGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMD  116 (506)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcC
Confidence            699999999999999999884 48999999999885322    2356999999999999999999998864322100112


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.++
T Consensus       117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tv  196 (506)
T PRK13549        117 YDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIAC  196 (506)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence            23344678899999999888999999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      |++||+.. .+..+||++++|++ |+++..|+++++
T Consensus       197 i~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~  230 (506)
T PRK13549        197 IYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM  230 (506)
T ss_pred             EEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence            99999974 78899999999987 888888887654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.3e-46  Score=296.28  Aligned_cols=179  Identities=28%  Similarity=0.496  Sum_probs=157.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++.... .+.++|+||++.+++.+|++||+.+......   ..    .
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~  102 (223)
T TIGR03740        32 LGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----D  102 (223)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----H
Confidence            59999999999999999988 79999999999875432 2468999999999999999999987654321   11    2


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      ..+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||+|||+.+++.+.++|+++++++.++|++||
T Consensus       103 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH  182 (223)
T TIGR03740       103 SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH  182 (223)
T ss_pred             HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            45778999999998899999999999999999999999999999999999999999999999999999877889999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      ++. .+..+||++++|++ |+++..|++.+
T Consensus       183 ~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~  210 (223)
T TIGR03740       183 ILS-EVQQLADHIGIISE-GVLGYQGKINK  210 (223)
T ss_pred             CHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence            974 67899999999987 88888887754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=3.9e-46  Score=297.73  Aligned_cols=182  Identities=25%  Similarity=0.312  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++....    .++.++|++|++.+++.+|+.||+.+.......   . 
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~-  106 (230)
T TIGR03410        32 LGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR---R-  106 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc---c-
Confidence            59999999999999999998 79999999999875321    245689999999999999999999886543211   1 


Q ss_pred             HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                        ..+.+.++++.++ +....++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|++++++ +.|
T Consensus       107 --~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  184 (230)
T TIGR03410       107 --SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA  184 (230)
T ss_pred             --hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence              1234567777776 567789999999999999999999999999999999999999999999999999999875 789


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +|++||+.. .+..+||+++++++ |+++..|+++++
T Consensus       185 ii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~  219 (230)
T TIGR03410       185 ILLVEQYLD-FARELADRYYVMER-GRVVASGAGDEL  219 (230)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence            999999974 78889999999987 888889988876

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=9.2e-46  Score=297.61  Aligned_cols=190  Identities=24%  Similarity=0.269  Sum_probs=156.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHHccCC-c--
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-R--   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~--   72 (197)
                      +||||||||||+|+|+|+.+ +|++|+|.++|.++...   .. +..++|++|++.+++.+|+.||+.+....... .  
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~  111 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE  111 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhccccc
Confidence            59999999999999999951 37999999999987532   11 23489999999999999999999876432110 0  


Q ss_pred             -cccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          73 -RTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        73 -~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                       ........+.+.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  191 (243)
T TIGR01978       112 EPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR  191 (243)
T ss_pred             ccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence             011223345688999999997 46788887 599999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHHH
Q psy4235         150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++.|+|++||++. .+... ||++++|++ |+++..|+++++.
T Consensus       192 ~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~~~~~  233 (243)
T TIGR01978       192 EPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDVELAK  233 (243)
T ss_pred             HCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCHHHhc
Confidence            77899999999974 67777 899999987 8888889887553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.1e-46  Score=302.19  Aligned_cols=189  Identities=26%  Similarity=0.338  Sum_probs=160.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHcc-CCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT-MDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~-~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.+++.+||.||+.++.... .......
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  111 (256)
T TIGR03873        33 LGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDS  111 (256)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCC
Confidence            59999999999999999998 7999999999987532   23456899999988888899999998753211 0000011


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++.+..++++.+||+||+||++|||||+.+|+++||||||+|||+.++..+.++|+++++++.|+|
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii  191 (256)
T TIGR03873       112 PHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV  191 (256)
T ss_pred             HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            22345688899999999889999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++||++. .+..+||++++|++ |+++..|+.+++.
T Consensus       192 i~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  225 (256)
T TIGR03873       192 AALHDLN-LAASYCDHVVVLDG-GRVVAAGPPREVL  225 (256)
T ss_pred             EEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHHHhh
Confidence            9999975 78899999999987 8888889888763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.1e-45  Score=296.25  Aligned_cols=187  Identities=30%  Similarity=0.453  Sum_probs=162.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+|+.||+.+......   ......
T Consensus        31 ~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~  106 (235)
T cd03299          31 LGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEI  106 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC---CCHHHH
Confidence            59999999999999999988 7999999999987542 234579999999999999999999987643321   112234


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.|++++.+ +.|+|++
T Consensus       107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~  186 (235)
T cd03299         107 ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV  186 (235)
T ss_pred             HHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            456788999999998899999999999999999999999999999999999999999999999999998765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++. .+.+.||++++|++ |+++..|+++++.+
T Consensus       187 tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  219 (235)
T cd03299         187 THDFE-EAWALADKVAIMLN-GKLIQVGKPEEVFK  219 (235)
T ss_pred             ecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence            99974 67889999999987 88888888876643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-46  Score=299.65  Aligned_cols=188  Identities=31%  Similarity=0.406  Sum_probs=158.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++|    +++|+|+++|+++..     ..+++.++|++|++.+++.+||.||+.+.......
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~  115 (253)
T PRK14267         36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL  115 (253)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc
Confidence            699999999999999999873    259999999998751     12345799999999999999999999886532211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+.+.++++.+++.    ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus       116 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  194 (253)
T PRK14267        116 -VKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE  194 (253)
T ss_pred             -cCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence             011223345678899999874    357889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus       195 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  236 (253)
T PRK14267        195 LKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPTRKVF  236 (253)
T ss_pred             Hhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHH
Confidence            865 689999999974 68899999999987 8998999988775

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-46  Score=299.50  Aligned_cols=182  Identities=29%  Similarity=0.441  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++..   ...++.++|++|++.+++ .|+.||+.+......       
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-------  105 (241)
T PRK14250         35 VGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-------  105 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-------
Confidence            59999999999999999988 799999999998753   233467999999998887 599999886532211       


Q ss_pred             HHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          78 ELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      .....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ |.|+
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti  185 (241)
T PRK14250        106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV  185 (241)
T ss_pred             cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence            1134677899999996 5788999999999999999999999999999999999999999999999999999764 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+.++||++++|++ |+++..|+++++..
T Consensus       186 i~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  221 (241)
T PRK14250        186 IWITHNME-QAKRIGDYTAFLNK-GILVEYAKTYDFFT  221 (241)
T ss_pred             EEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCHHHHhc
Confidence            99999974 68889999999987 88888898887753

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=7.3e-46  Score=334.20  Aligned_cols=193  Identities=36%  Similarity=0.579  Sum_probs=166.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||||+|+|+.+ |  .+|+|.+||+++... .++.++||+|++.+++.+||+||+.+.+..........++
T Consensus       100 ~GpnGaGKSTLL~iLaG~~~-~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~  177 (659)
T PLN03211        100 LGPSGSGKSTLLNALAGRIQ-GNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE  177 (659)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHH
Confidence            69999999999999999987 4  489999999987542 3456899999999999999999999876543221222334


Q ss_pred             HHHHHHHHHHHcCCccccc-----ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          79 LNKTITRVMENLGINHRRQ-----VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ..++++++++.+||.+..+     +.+++||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++|+
T Consensus       178 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~  257 (659)
T PLN03211        178 KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK  257 (659)
T ss_pred             HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCC
Confidence            4567899999999987664     45678999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      |||+++|++...+.+.||++++|++ |++++.|+++++.++|.
T Consensus       258 TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~  299 (659)
T PLN03211        258 TIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFE  299 (659)
T ss_pred             EEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHH
Confidence            9999999986457899999999987 89999999999988774

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=299.36  Aligned_cols=187  Identities=23%  Similarity=0.383  Sum_probs=157.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|++++    +++|+|+++|+++..     ...++.++|++|++.+++ +||+||+.+.......
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~  117 (254)
T PRK14273         39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT  117 (254)
T ss_pred             ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC
Confidence            599999999999999999873    258999999998742     123567999999988885 8999999886532211


Q ss_pred             ccccHHHHHHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++    .+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       118 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  195 (254)
T PRK14273        118 --KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN  195 (254)
T ss_pred             --CCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence              1122344667888999887    3457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus       196 ~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  238 (254)
T PRK14273        196 LKE-SYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESSTDELFF  238 (254)
T ss_pred             Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            964 789999999974 67899999999987 89988999988753

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=6.6e-46  Score=295.42  Aligned_cols=186  Identities=26%  Similarity=0.374  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccC-CccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTM-DRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~-~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++..  .++.++|++|++.++  ..+|+.+|+.+...... .......
T Consensus        12 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~   88 (223)
T TIGR03771        12 LGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCV   88 (223)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcH
Confidence            59999999999999999988 799999999988642  345689999998764  34799999987532110 0000112


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ...+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|+++++++.|+|+
T Consensus        89 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii  168 (223)
T TIGR03771        89 ADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM  168 (223)
T ss_pred             HHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            23456888999999998889999999999999999999999999999999999999999999999999999877899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +||+.. .+.++||+++++ + |+++..|+++++.
T Consensus       169 ~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~~  200 (223)
T TIGR03771       169 TTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQLQ  200 (223)
T ss_pred             EeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHhc
Confidence            999974 688999999998 6 8888889888764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1e-45  Score=301.72  Aligned_cols=188  Identities=23%  Similarity=0.311  Sum_probs=159.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.  +++.+|+.+++.+.......  ..
T Consensus        45 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~--~~  121 (267)
T PRK15112         45 IGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD--LE  121 (267)
T ss_pred             EcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC--CC
Confidence            69999999999999999998 7999999999987531   22356999999975  67788999999876543211  11


Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          76 WLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      .....+.+.++++.+++. ...++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +.
T Consensus       122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~  201 (267)
T PRK15112        122 PEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI  201 (267)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence            223445788999999994 6778899999999999999999999999999999999999999999999999999765 88


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       202 tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  239 (267)
T PRK15112        202 SYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGSTADVLA  239 (267)
T ss_pred             EEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHHhc
Confidence            9999999974 78889999999987 88888888887653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-45  Score=301.83  Aligned_cols=186  Identities=23%  Similarity=0.363  Sum_probs=159.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...   .+++.++|++|++. +++..|+.+|+.+......   ...
T Consensus        41 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~  116 (269)
T PRK13648         41 VGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPY  116 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCH
Confidence            59999999999999999998 7999999999987532   34567999999974 6777899999988643221   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti  196 (269)
T PRK13648        117 DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI  196 (269)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            334456788999999998899999999999999999999999999999999999999999999999999999765 8899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+.. ||++++|++ |+++..|+++++..
T Consensus       197 iivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~~~~~~  231 (269)
T PRK13648        197 ISITHDLS-EAME-ADHVIVMNK-GTVYKEGTPTEIFD  231 (269)
T ss_pred             EEEecCch-HHhc-CCEEEEEEC-CEEEEecCHHHHhc
Confidence            99999975 5654 999999987 89988999887644

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-45  Score=298.59  Aligned_cols=186  Identities=27%  Similarity=0.432  Sum_probs=156.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+..  +  |++|+|.++|+++..     ..+++.++|++|++.+|+. ||.||+.+.......
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  116 (253)
T PRK14242         38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGV  116 (253)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCC
Confidence            59999999999999999863  2  479999999998743     1234679999999988884 999999886533211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.+    ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus       117 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        117 --KDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             --CCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              112233567888999999843    46788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.|||++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus       195 ~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~  236 (253)
T PRK14242        195 LKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPTEQIF  236 (253)
T ss_pred             Hhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence            954 789999999974 68899999999987 8888889988765

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-46  Score=305.40  Aligned_cols=185  Identities=23%  Similarity=0.320  Sum_probs=156.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--------ccccceEEEEecCCC--CCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--------TVMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--------~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..        ..+++.++|++|++.  +++ .|+.||+.+......
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~  120 (289)
T PRK13645         43 IGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLG  120 (289)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcC
Confidence            59999999999999999998 799999999998741        123457999999973  444 599999987643211


Q ss_pred             CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                         .......+.+.++++.++|. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus       121 ---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~  197 (289)
T PRK13645        121 ---ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN  197 (289)
T ss_pred             ---CCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence               11223345678899999994 67899999999999999999999999999999999999999999999999999987


Q ss_pred             hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++ +.|||++||++. .+.++||++++|++ |++++.|+++++.
T Consensus       198 ~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  239 (289)
T PRK13645        198 KEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSPFEIF  239 (289)
T ss_pred             HhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence            64 889999999974 68899999999987 8888889887764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.8e-46  Score=304.55  Aligned_cols=186  Identities=24%  Similarity=0.338  Sum_probs=159.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce---eEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~---G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++   |+|.++|.++...   ..++.+||+||++. +++.+||.||+.|......   
T Consensus        39 ~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~---  114 (282)
T PRK13640         39 IGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA---  114 (282)
T ss_pred             ECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC---
Confidence            59999999999999999998 676   9999999998542   23457999999974 6777899999987643221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      .......+.+.++++.++|.+..++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |
T Consensus       115 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g  194 (282)
T PRK13640        115 VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN  194 (282)
T ss_pred             CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            123344567889999999999999999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|||++||+.. .+ ..||++++|++ |++++.|+++++..
T Consensus       195 ~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~~  232 (282)
T PRK13640        195 LTVISITHDID-EA-NMADQVLVLDD-GKLLAQGSPVEIFS  232 (282)
T ss_pred             CEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            99999999975 55 57999999987 89989999987654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.2e-46  Score=303.85  Aligned_cols=186  Identities=25%  Similarity=0.340  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..    ...++.++|+||++. .+...||.+|+.|......   ..
T Consensus        42 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~  117 (280)
T PRK13633         42 LGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IP  117 (280)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CC
Confidence            59999999999999999998 799999999998853    223567999999974 2334699999988654321   12


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                      .....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t  197 (280)
T PRK13633        118 PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT  197 (280)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            2334567889999999999999999999999999999999999999999999999999999999999999999764 899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++||++. .+.. ||++++|++ |+++..|+++++..
T Consensus       198 illvtH~~~-~~~~-~d~v~~l~~-G~i~~~g~~~~~~~  233 (280)
T PRK13633        198 IILITHYME-EAVE-ADRIIVMDS-GKVVMEGTPKEIFK  233 (280)
T ss_pred             EEEEecChH-HHhc-CCEEEEEEC-CEEEEecCHHHHhc
Confidence            999999985 5655 999999987 88888999988754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=4e-46  Score=327.90  Aligned_cols=188  Identities=21%  Similarity=0.361  Sum_probs=161.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-cccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~   75 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   . .++.++|++|++.+++.+||.||+.++...... ....
T Consensus        36 ~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  114 (501)
T PRK10762         36 VGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRID  114 (501)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccC
Confidence            69999999999999999998 7999999999987432   1 235689999999999999999999886432110 0112


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ....++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.|+
T Consensus       115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tv  194 (501)
T PRK10762        115 WKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGI  194 (501)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence            23344678899999999988999999999999999999999999999999999999999999999999999998778899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      |++||+.. .+..+||++++|++ |+++..|+++++
T Consensus       195 ii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~  228 (501)
T PRK10762        195 VYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL  228 (501)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence            99999974 78899999999987 888888877654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.9e-45  Score=294.36  Aligned_cols=187  Identities=28%  Similarity=0.400  Sum_probs=162.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|.++ |++|+|.++|+++... ..++.++|++|++.+++.+|+.+|+.+......   ......
T Consensus        32 ~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~  107 (232)
T cd03300          32 LGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEI  107 (232)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999998 7999999999988542 234578999999999999999999987654321   112234


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|++
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~  187 (232)
T cd03300         108 KERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV  187 (232)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            557788999999998999999999999999999999999999999999999999999999999999999865 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. .+.+.||++++|++ |++.+.|+.+++..
T Consensus       188 sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~~~~~~  220 (232)
T cd03300         188 THDQE-EALTMSDRIAVMNK-GKIQQIGTPEEIYE  220 (232)
T ss_pred             eCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHHHh
Confidence            99974 67899999999987 88888888877654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=8e-46  Score=301.43  Aligned_cols=188  Identities=28%  Similarity=0.394  Sum_probs=158.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcc--------cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~--------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+++|+|+++ |+   +|+|+++|.++...        ..++.++|+||++.+++.+||.||+.+.....
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  114 (262)
T PRK09984         36 LGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGS  114 (262)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhccc
Confidence            59999999999999999987 44   59999999987421        22456899999999999999999998753211


Q ss_pred             CC-----ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          70 MD-----RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        70 ~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      ..     ...........+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  194 (262)
T PRK09984        115 TPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT  194 (262)
T ss_pred             ccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH
Confidence            00     0001123345788999999998888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      |++++++ |.|+|++||+.. .+..+||++++|++ |++++.|+++++
T Consensus       195 l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~  240 (262)
T PRK09984        195 LRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQQF  240 (262)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHh
Confidence            9999764 899999999974 68899999999987 888889998875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=299.15  Aligned_cols=189  Identities=25%  Similarity=0.391  Sum_probs=158.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+|    |++|+|.++|.++..     ..+++.++|++|++.+++.+||.||+.+.......
T Consensus        36 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~  115 (258)
T PRK14241         36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV  115 (258)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC
Confidence            599999999999999999873    279999999998742     13346799999999999999999999886543211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        116 --RNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             --CCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence              11223445678899999884    467889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+.++||++++|+     +.|++++.|++++++.
T Consensus       194 ~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~  242 (258)
T PRK14241        194 LKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS  242 (258)
T ss_pred             Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence            964 689999999974 6889999999997     2389999999887753

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=6.1e-46  Score=333.56  Aligned_cols=195  Identities=49%  Similarity=0.776  Sum_probs=172.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|||||||||||++|+|..++.  .+|+|.+||.+++...+++.+||++|++.+++.+||+||+.|.+..........++
T Consensus        57 ~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~  136 (617)
T TIGR00955        57 MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE  136 (617)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH
Confidence            6999999999999999988731  38999999999875556678999999999999999999999987655332233445


Q ss_pred             HHHHHHHHHHHcCCcccccccCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          79 LNKTITRVMENLGINHRRQVQIS------GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                      ..+.++++++.+|+.+..++.++      .||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++|
T Consensus       137 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g  216 (617)
T TIGR00955       137 KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG  216 (617)
T ss_pred             HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC
Confidence            56789999999999988888876      599999999999999999999999999999999999999999999998779


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      +|+|+++|++..++.+.||++++|++ |++++.|+++++.++|.
T Consensus       217 ~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~  259 (617)
T TIGR00955       217 KTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFS  259 (617)
T ss_pred             CEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHH
Confidence            99999999986578999999999987 89999999999987764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-45  Score=296.00  Aligned_cols=188  Identities=24%  Similarity=0.372  Sum_probs=157.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--CCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--GLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+++  +|++|+|.++|+++...   ..++.++|+||++.+|+ .|++||+.++...+... ..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~  111 (246)
T PRK14269         34 IGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KN  111 (246)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cC
Confidence            59999999999999999874  26899999999988532   23456999999999887 59999998864332110 01


Q ss_pred             HHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          76 WLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      .....+.+.++++.+++.    +..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|++++. 
T Consensus       112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-  190 (246)
T PRK14269        112 KDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-  190 (246)
T ss_pred             hHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence            123445678899999995    346788999999999999999999999999999999999999999999999999864 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       191 ~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  230 (246)
T PRK14269        191 NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESKEFFE  230 (246)
T ss_pred             CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHHHHHh
Confidence            889999999974 68899999999987 89998999887653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-46  Score=326.92  Aligned_cols=188  Identities=24%  Similarity=0.350  Sum_probs=161.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccC-Ccc--
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRR--   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~--   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++....    .++.++|++|++.+++.+||.||+.+...... ...  
T Consensus        37 iG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  115 (510)
T PRK09700         37 LGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVN  115 (510)
T ss_pred             ECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccccccc
Confidence            69999999999999999998 79999999999885421    23469999999999999999999987532110 000  


Q ss_pred             -ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          74 -TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        74 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                       .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|
T Consensus       116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  195 (510)
T PRK09700        116 IIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG  195 (510)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence             1122345678899999999988999999999999999999999999999999999999999999999999999998778


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      .|||++||+.. .+..+||++++|++ |++++.|+++++
T Consensus       196 ~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~  232 (510)
T PRK09700        196 TAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSDV  232 (510)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhhC
Confidence            99999999974 78899999999987 888888888764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-45  Score=299.11  Aligned_cols=188  Identities=24%  Similarity=0.393  Sum_probs=157.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|+++|+++..     ..+++.++|++|++.+++. ||.||+.+....+..
T Consensus        51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  129 (267)
T PRK14235         51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL  129 (267)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence            599999999999999999873    489999999998752     1235678999999988885 999999886532211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      . .......+.+.++++.+++.+    ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       130 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  208 (267)
T PRK14235        130 A-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE  208 (267)
T ss_pred             c-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            0 112233456788999999953    46788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       209 l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  251 (267)
T PRK14235        209 LRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDTEKMFT  251 (267)
T ss_pred             Hhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            965 689999999974 78899999999987 89989999887753

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-45  Score=298.54  Aligned_cols=187  Identities=25%  Similarity=0.408  Sum_probs=157.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++  |  |++|+|.++|+++..     ..+++.++|++|++.+++ +|+.||+.+...... 
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-  122 (260)
T PRK10744         45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE-  122 (260)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-
Confidence            59999999999999999985  2  479999999998742     123567999999998887 799999987653221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+++.++++.+++.    +..++++.+|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|++
T Consensus       123 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  201 (260)
T PRK10744        123 -KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE  201 (260)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence             112223345688899999874    457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus       202 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  244 (260)
T PRK10744        202 LKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNTDTIFT  244 (260)
T ss_pred             Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            964 689999999974 67889999999987 89988899887653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-45  Score=330.96  Aligned_cols=188  Identities=23%  Similarity=0.277  Sum_probs=162.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...      .+++.++|+||++  .+++.+||.+|+.+....+.. 
T Consensus       356 vG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~-  433 (623)
T PRK10261        356 VGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL-  433 (623)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC-
Confidence            69999999999999999998 7999999999987531      1345799999997  588999999999886543211 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                       .......+++.++++.++|. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++
T Consensus       434 -~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~  512 (623)
T PRK10261        434 -LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD  512 (623)
T ss_pred             -CCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence             11223456788999999996 6789999999999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       +.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus       513 ~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~~i~~  553 (623)
T PRK10261        513 FGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRRAVFE  553 (623)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhc
Confidence             899999999974 78899999999987 89999999988753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=2.4e-45  Score=294.49  Aligned_cols=180  Identities=31%  Similarity=0.418  Sum_probs=153.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..  ...++.++|++ |.+.+++.+|+.||+.+......   ....
T Consensus        53 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~  128 (236)
T cd03267          53 IGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD---LPPA  128 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC---CCHH
Confidence            59999999999999999998 799999999987632  23445789998 55778888999999987654321   1122


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI  156 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii  156 (197)
                      ...+.+.++++.+++.+..++++.+||+|||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ +.|+|
T Consensus       129 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii  208 (236)
T cd03267         129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL  208 (236)
T ss_pred             HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence            33456788999999998889999999999999999999999999999999999999999999999999999765 78999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      ++||++. .+..+||++++|.+ |++++.|
T Consensus       209 ivsH~~~-~~~~~~d~i~~l~~-G~i~~~g  236 (236)
T cd03267         209 LTSHYMK-DIEALARRVLVIDK-GRLLYDG  236 (236)
T ss_pred             EEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence            9999974 78899999999987 8876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.4e-45  Score=325.13  Aligned_cols=182  Identities=20%  Similarity=0.312  Sum_probs=160.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++....   . ++.++|++|++.+++.+||.||+.+....       .
T Consensus        43 iG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~  114 (510)
T PRK15439         43 LGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------R  114 (510)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------c
Confidence            69999999999999999998 79999999999875321   1 24589999999999999999999875321       1


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ...++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|.+||
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii  194 (510)
T PRK15439        115 QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV  194 (510)
T ss_pred             hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            12346788999999999889999999999999999999999999999999999999999999999999999987889999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       195 ivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  228 (510)
T PRK15439        195 FISHKLP-EIRQLADRISVMRD-GTIALSGKTADLS  228 (510)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHHcC
Confidence            9999974 78899999999987 8888889887653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=2.2e-45  Score=296.71  Aligned_cols=184  Identities=29%  Similarity=0.407  Sum_probs=158.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ + +|+|.++|+++...   .+++.++|++|++.+++.+|+.+|+.++....    ....
T Consensus        28 ~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~  101 (248)
T PRK03695         28 VGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTE  101 (248)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcH
Confidence            59999999999999999875 4 89999999987532   23456899999988888899999998763211    1122


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT-------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ...+.+.++++.+++.+..++++.+||+|||||++|||||+.       +|++|||||||+|||+.++..+.++|+++++
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~  181 (248)
T PRK03695        102 AVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ  181 (248)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence            335678899999999988899999999999999999999997       6799999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++.|+|++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus       182 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  221 (248)
T PRK03695        182 QGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRDEVL  221 (248)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHh
Confidence            7899999999974 68899999999987 8888889887764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-45  Score=300.67  Aligned_cols=186  Identities=19%  Similarity=0.276  Sum_probs=159.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+||||||||+++|+|+++ |++|+|.++|+++...   ..++.++|++|++. +++..||.||+.+......   ...
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~  114 (277)
T PRK13642         39 IGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPR  114 (277)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCH
Confidence            59999999999999999998 7999999999987532   24567999999974 6777899999987643221   122


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ....+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++++++ |.|+
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti  194 (277)
T PRK13642        115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV  194 (277)
T ss_pred             HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            234467889999999998899999999999999999999999999999999999999999999999999999875 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+. .||++++|++ |+++..|++++++.
T Consensus       195 il~sH~~~-~~~-~~d~i~~l~~-G~i~~~g~~~~~~~  229 (277)
T PRK13642        195 LSITHDLD-EAA-SSDRILVMKA-GEIIKEAAPSELFA  229 (277)
T ss_pred             EEEeCCHH-HHH-hCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            99999975 554 6999999997 88888899887653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.3e-45  Score=293.18  Aligned_cols=187  Identities=28%  Similarity=0.414  Sum_probs=162.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+|+.+|+.||+.+......   ......
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~  107 (237)
T TIGR00968        32 LGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKI  107 (237)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHH
Confidence            59999999999999999988 7999999999987542 234569999999999999999999987654321   112233


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.++|++++.+ +.|+|++
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~  187 (237)
T TIGR00968       108 KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV  187 (237)
T ss_pred             HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            456789999999998899999999999999999999999999999999999999999999999999998775 7899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++. .+.++||++++|++ |++++.|+.+++.+
T Consensus       188 sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~~  220 (237)
T TIGR00968       188 THDQE-EAMEVADRIVVMSN-GKIEQIGSPDEVYD  220 (237)
T ss_pred             eCCHH-HHHhhcCEEEEEEC-CEEEEecCHHHHHc
Confidence            99974 67899999999987 88888898887653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-45  Score=299.19  Aligned_cols=191  Identities=27%  Similarity=0.373  Sum_probs=165.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc---c---c-ccceEEEEecCC--CCCCCCCHHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR---T---V-MSRISGYVAQQD--FLIEELTVLEHLQFMAK   67 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~   67 (197)
                      +|.|||||||+.++|+|+++ ++   .+|+|.|+|+++..   .   . +.+.|+|+||++  .|.|-+||.+.+.....
T Consensus        37 VGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~  116 (316)
T COG0444          37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR  116 (316)
T ss_pred             EcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence            69999999999999999997 32   57999999998743   1   1 235799999996  58899999999988776


Q ss_pred             ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      .+.... ..++..+++.++|+.+|+.+   ..+.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++
T Consensus       117 ~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~L  195 (316)
T COG0444         117 LHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDL  195 (316)
T ss_pred             Hhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHH
Confidence            543210 23455678999999999974   67999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         145 LKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       145 l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+++++ .|.++|++|||+ ..+.++||||+||.. |++++.|+.+++++.
T Consensus       196 l~~l~~e~~~aiilITHDl-~vva~~aDri~VMYa-G~iVE~g~~~~i~~~  244 (316)
T COG0444         196 LKELQREKGTALILITHDL-GVVAEIADRVAVMYA-GRIVEEGPVEEIFKN  244 (316)
T ss_pred             HHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEEC-cEEEEeCCHHHHhcC
Confidence            999987 489999999997 589999999999987 999999999988753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-45  Score=294.51  Aligned_cols=188  Identities=25%  Similarity=0.392  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++  |  |++|+|+++|.++..     ...++.++|+||++.+++.+|+.||+.+...... 
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-  114 (252)
T PRK14256         36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG-  114 (252)
T ss_pred             ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-
Confidence            59999999999999999975  2  268999999998742     1235679999999999999999999987643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+.+.++++.+++..    ..++.+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       115 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  193 (252)
T PRK14256        115 -RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE  193 (252)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence             1112233456788999999853    46788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|||++||+.. .+.++||++++|.+ |+++..|+++++..
T Consensus       194 ~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  236 (252)
T PRK14256        194 LKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETKKIFT  236 (252)
T ss_pred             HHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            975 589999999974 77899999999987 89988999887753

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=322.65  Aligned_cols=188  Identities=20%  Similarity=0.284  Sum_probs=160.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...    ..++.++|++|++.+++.+||.||+.+............
T Consensus        30 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~  108 (491)
T PRK10982         30 MGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ  108 (491)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCH
Confidence            69999999999999999998 7999999999987532    124569999999999999999999987532111000112


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.+.++++.+++....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.|+|
T Consensus       109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  188 (491)
T PRK10982        109 DKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV  188 (491)
T ss_pred             HHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            23345788999999999888999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++||+.. ++..+||++++|++ |+++..|+++++
T Consensus       189 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~  221 (491)
T PRK10982        189 YISHKME-EIFQLCDEITILRD-GQWIATQPLAGL  221 (491)
T ss_pred             EEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhC
Confidence            9999974 78899999999997 899888887654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=5.8e-45  Score=295.79  Aligned_cols=187  Identities=26%  Similarity=0.323  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-----CCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-----ISRT---V----MSRISGYVAQQD--FLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-----~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~   66 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|++     +...   .    .++.++|++|++  .+++.+|+.+|+.+..
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~  116 (258)
T PRK11701         38 VGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERL  116 (258)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHH
Confidence            59999999999999999998 799999999988     5431   1    234689999997  4677889999997643


Q ss_pred             HccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          67 KLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                      .....  .........+.++++.+++. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|
T Consensus       117 ~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  194 (258)
T PRK11701        117 MAVGA--RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL  194 (258)
T ss_pred             HHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            22111  01123345678999999997 4788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++++++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       195 ~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~  240 (258)
T PRK11701        195 RGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLTDQVL  240 (258)
T ss_pred             HHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHh
Confidence            998765 889999999974 67789999999987 8999999988775

>KOG0061|consensus

Probab=100.00  E-value=1.1e-45  Score=330.22  Aligned_cols=195  Identities=49%  Similarity=0.786  Sum_probs=180.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|||||||||||++|+|...+  ..+|+|.+||++.....+++..|||.|++.+++.+||+|++.|.+.++........+
T Consensus        62 mG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~  141 (613)
T KOG0061|consen   62 MGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE  141 (613)
T ss_pred             ECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH
Confidence            699999999999999999863  378999999988877778889999999999999999999999999887655445667


Q ss_pred             HHHHHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          79 LNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      .+++++++++.+||.+.+|+.++     .+||||||||+||.-|+++|.+|+|||||+|||..+..++++.|++++++|+
T Consensus       142 k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~gr  221 (613)
T KOG0061|consen  142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGR  221 (613)
T ss_pred             HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCC
Confidence            78899999999999999999886     5999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      |||++.|+|...+++.+|++++|.+ |++++.|+++++.++|.
T Consensus       222 tVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~~~~~~ff~  263 (613)
T KOG0061|consen  222 TVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSPRELLEFFS  263 (613)
T ss_pred             EEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCHHHHHHHHH
Confidence            9999999999999999999999997 89999999999988774

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-45  Score=280.42  Aligned_cols=181  Identities=28%  Similarity=0.372  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+++|+.. |+.|+|.+||.+++.....  -|.|||++.++|.+|+.||++|+......   .+.+..
T Consensus        37 lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi---~k~~R~  110 (259)
T COG4525          37 LGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLRGI---EKAQRR  110 (259)
T ss_pred             EcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCCCcc--ceeEeccCccchhhHHHHHHHHHHHhcCC---CHHHHH
Confidence            59999999999999999998 7999999999999754322  28999999999999999999999887643   345667


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      +.+.+++..+||.+..++++.+||||||||+.|||||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++|
T Consensus       111 ~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT  190 (259)
T COG4525         111 EIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT  190 (259)
T ss_pred             HHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence            7899999999999999999999999999999999999999999999999999999999999999999875 499999999


Q ss_pred             cCCcchHHhhcCeEEEEeCC-cEEEEecCh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHG-GLLAYHGQV  188 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~g-g~i~~~g~~  188 (197)
                      |+.. ++.-.++++++|..+ |+|+..-++
T Consensus       191 H~ie-EAlflatrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         191 HDIE-EALFLATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             ccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence            9985 678889999999853 678765444

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.7e-45  Score=318.71  Aligned_cols=189  Identities=28%  Similarity=0.336  Sum_probs=166.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c---ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R---TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~---~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +|+||||||||.|+|+|+.+ |++|+|.++|.+++  .   ...++.+-++||+|  .+.|.+||.+++......+....
T Consensus       323 VGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~  401 (539)
T COG1123         323 VGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS  401 (539)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc
Confidence            69999999999999999998 69999999998732  1   12345688999986  58899999999998876554322


Q ss_pred             ccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          74 TTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                        ..+.++++.++++.++|.. .++++|.+||||||||++|||||+.+|++|++|||||+||+..+.++.++|+++.++ 
T Consensus       402 --~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~  479 (539)
T COG1123         402 --GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL  479 (539)
T ss_pred             --hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence              3445568999999999986 799999999999999999999999999999999999999999999999999999876 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |.|.+++|||. ..+..+||||++|.. |++++.|+.+++++.
T Consensus       480 g~t~lfISHDl-~vV~~i~drv~vm~~-G~iVE~G~~~~v~~~  520 (539)
T COG1123         480 GLTYLFISHDL-AVVRYIADRVAVMYD-GRIVEEGPTEKVFEN  520 (539)
T ss_pred             CCEEEEEeCCH-HHHHhhCceEEEEEC-CeEEEeCCHHHHhcC
Confidence            89999999997 489999999999998 999999988887653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-45  Score=294.40  Aligned_cols=187  Identities=21%  Similarity=0.368  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHhcC---cCC-CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKR---VKG-LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~---~~~-~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+   .++ +++|+|.++|.++...     ..++.++|+||++.+++ .|+.||+.+.......
T Consensus        35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~  113 (250)
T PRK14245         35 IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence            599999999999999996   331 2589999999987531     23456999999998887 5999999876543211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.+    ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       114 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  191 (250)
T PRK14245        114 --KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE  191 (250)
T ss_pred             --CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence              111223456788999999853    56888999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +. ++.|||++||+.. .+.+.||++++|++ |++++.|+++++.+
T Consensus       192 ~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~~~~~  234 (250)
T PRK14245        192 LK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTKKIFT  234 (250)
T ss_pred             Hh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            95 4789999999974 67899999999987 89999999988753

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=3.5e-45  Score=287.53  Aligned_cols=170  Identities=32%  Similarity=0.461  Sum_probs=147.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---c----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---T----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   .    ..++.++|++|++.+++.+|+.||+.+......   
T Consensus        30 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~---  105 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK---  105 (206)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC---
Confidence            59999999999999999998 799999999998532   1    134579999999999999999999998654221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      .......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+++.
T Consensus       106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  185 (206)
T TIGR03608       106 LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK  185 (206)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence            12233456788999999999889999999999999999999999999999999999999999999999999999987789


Q ss_pred             EEEEEecCCcchHHhhcCeEEEE
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ++|++||+.. . ...||++++|
T Consensus       186 tii~~sh~~~-~-~~~~d~i~~l  206 (206)
T TIGR03608       186 TIIIVTHDPE-V-AKQADRVIEL  206 (206)
T ss_pred             EEEEEeCCHH-H-HhhcCEEEeC
Confidence            9999999974 4 4689999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=9.9e-46  Score=276.26  Aligned_cols=177  Identities=32%  Similarity=0.467  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +|||||||||||-+++|+.. |++|+|++.|+++...      . ..+.+|||||...+.|+||..||+.....+...  
T Consensus        42 VG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge--  118 (228)
T COG4181          42 VGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE--  118 (228)
T ss_pred             EcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC--
Confidence            69999999999999999998 7999999999998532      1 236799999999999999999999998776532  


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                       ........+.++|+.+||.+.++.+|.+|||||+|||+||||++..|++||.||||.+||..+-++|.+++-.+..+ |
T Consensus       119 -~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G  197 (228)
T COG4181         119 -SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG  197 (228)
T ss_pred             -ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC
Confidence             12234567889999999999999999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      .|.+++|||+  .+...|+|.+.|.. |+++.
T Consensus       198 ~TlVlVTHD~--~LA~Rc~R~~r~~~-G~l~~  226 (228)
T COG4181         198 TTLVLVTHDP--QLAARCDRQLRLRS-GRLVE  226 (228)
T ss_pred             ceEEEEeCCH--HHHHhhhheeeeec-ceecc
Confidence            9999999997  47899999999998 88763

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-45  Score=298.01  Aligned_cols=186  Identities=24%  Similarity=0.405  Sum_probs=155.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|.++|.++..     ..+++.++|+||++.+++. ||.||+.+...... 
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-  122 (269)
T PRK14259         45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING-  122 (269)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC-
Confidence            599999999999999999763    489999999998742     2334569999999988885 99999988654321 


Q ss_pred             ccccHHHHHHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .. ....+.+.++++.+++    .+..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       123 --~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  199 (269)
T PRK14259        123 --YT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE  199 (269)
T ss_pred             --Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence              11 1233566778888876    3457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeC----------CcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAH----------GGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~----------gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||++. .+..+||++++|++          .|++++.|+++++..
T Consensus       200 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~  253 (269)
T PRK14259        200 LKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN  253 (269)
T ss_pred             Hhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence            864 689999999974 78999999999985          267889999988754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.5e-45  Score=295.62  Aligned_cols=188  Identities=25%  Similarity=0.383  Sum_probs=150.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++..   ..+++.++|++|++.+++ .||.||+.+.............
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~  111 (237)
T cd03252          34 VGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEA  111 (237)
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHH
Confidence            59999999999999999998 799999999998743   223567999999988775 5999999874321100000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.++++.+  ++....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++ ++.|+
T Consensus       112 ~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti  190 (237)
T cd03252         112 AKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTV  190 (237)
T ss_pred             HHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEE
Confidence            0111234556655  56666788999999999999999999999999999999999999999999999999996 48999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++||++. .+ ..||++++|++ |++++.|++++++..
T Consensus       191 ii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~~~~~~~  226 (237)
T cd03252         191 IIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSHDELLAE  226 (237)
T ss_pred             EEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCHHHHHhc
Confidence            99999985 55 56999999987 899899999887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-45  Score=294.89  Aligned_cols=187  Identities=24%  Similarity=0.408  Sum_probs=156.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++ |   ++|+|+++|+++..     ...++.++|++|++.+++. |++||+.+.......
T Consensus        44 ~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  122 (259)
T PRK14274         44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT  122 (259)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC
Confidence            699999999999999999862 2   58999999998742     1234679999999988886 999999876433211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       123 --~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  200 (259)
T PRK14274        123 --KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK  200 (259)
T ss_pred             --CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence              11223345678889999885    346889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+.++||++++|++ |+++..|++++++.
T Consensus       201 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  243 (259)
T PRK14274        201 LKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDTNKMFS  243 (259)
T ss_pred             Hhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhh
Confidence            965 789999999974 78899999999987 89999999988753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-45  Score=298.79  Aligned_cols=189  Identities=24%  Similarity=0.336  Sum_probs=158.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc--------eeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV--------QGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~--------~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+|+|+|+++ |+        +|+|.++|.++...   ..++.++|++|++.+++.+|+.||+.+.....
T Consensus        33 ~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~  111 (272)
T PRK13547         33 LGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH  111 (272)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhccccc
Confidence            59999999999999999988 66        89999999987532   23456899999987666789999998753211


Q ss_pred             CC-ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHH
Q psy4235          70 MD-RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSAN  139 (197)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~  139 (197)
                      .. .........+.+.++++.+++.+..++++.+||||||||++|||||+         .+|++|||||||++||+.+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~  191 (272)
T PRK13547        112 ARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH  191 (272)
T ss_pred             ccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHH
Confidence            00 00011223456788999999998899999999999999999999999         499999999999999999999


Q ss_pred             HHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         140 NVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       140 ~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      .+.++|++++++ +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus       192 ~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  243 (272)
T PRK13547        192 RLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPADVL  243 (272)
T ss_pred             HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHc
Confidence            999999999876 899999999974 67889999999987 8888889887764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-45  Score=293.33  Aligned_cols=186  Identities=24%  Similarity=0.380  Sum_probs=156.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+++|+|+.+|    +++|+|.++|.++...     ..++.++|+||++.+++ +|+.||+.+.......
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~  114 (251)
T PRK14270         36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI  114 (251)
T ss_pred             ECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC
Confidence            599999999999999999873    2799999999988431     23456999999998887 8999999876533211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       115 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        115 --KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             --CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              11223345677899999874    457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.++|++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus       193 ~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~  234 (251)
T PRK14270        193 LKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTEKIF  234 (251)
T ss_pred             HHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHHHHh
Confidence            876 589999999974 78899999999987 8898899998875

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-44  Score=293.19  Aligned_cols=188  Identities=24%  Similarity=0.401  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+  +  |++|+|.++|+++...     ..++.++|+||++.+++. |+.||+.+.......
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~  115 (251)
T PRK14244         37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL  115 (251)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC
Confidence            59999999999999999975  2  3799999999987421     235679999999988886 999999876432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+.+.++++.+++.+    ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus       116 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        116 -AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence             0112233456788999999864    45778999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+.++||++++|++ |+++..|+++++.+
T Consensus       195 ~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  237 (251)
T PRK14244        195 LKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTTQEIFK  237 (251)
T ss_pred             Hhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence            864 799999999974 67889999999987 89988899888754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.5e-44  Score=292.85  Aligned_cols=185  Identities=24%  Similarity=0.337  Sum_probs=156.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCcccc-cceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVM-SRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+.+ |    ++|+|+++|.++..... ++.++|++|++.  +.+.+|+.+|+.+.......  
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~--  111 (254)
T PRK10418         35 VGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK--  111 (254)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC--
Confidence            69999999999999999988 6    89999999998854332 356999999974  45667999998765432211  


Q ss_pred             ccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          74 TTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                       ..  ..+.+.++++.+++.+   ..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++
T Consensus       112 -~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~  188 (254)
T PRK10418        112 -PA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ  188 (254)
T ss_pred             -Ch--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence             11  2356889999999976   56889999999999999999999999999999999999999999999999999876


Q ss_pred             C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + |.|||++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus       189 ~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~  230 (254)
T PRK10418        189 KRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDVETLFN  230 (254)
T ss_pred             hcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence            4 889999999974 67889999999987 88989999887753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=292.45  Aligned_cols=187  Identities=26%  Similarity=0.362  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+ .|   ++|+|.++|+++..     ..+++.++|++|++.+++ +||.||+.+.......
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~  115 (252)
T PRK14239         37 IGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI  115 (252)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC
Confidence            59999999999999999853 14   58999999998742     123467999999998887 7999999886432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus       116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14239        116 --KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG  193 (252)
T ss_pred             --CcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence              11222345677889998874    456889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       194 ~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  236 (252)
T PRK14239        194 LKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDTKQMFM  236 (252)
T ss_pred             Hhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            865 689999999974 68899999999987 88889999888753

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=2e-45  Score=294.24  Aligned_cols=188  Identities=28%  Similarity=0.403  Sum_probs=152.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++..   ...++.++|++|++.+++ .|++||+.++............
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~  111 (234)
T cd03251          34 VGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEA  111 (234)
T ss_pred             ECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHH
Confidence            59999999999999999998 799999999998743   223566999999998887 5999999875321100000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.++++.+  ++....++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|++++ ++.+|
T Consensus       112 ~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~ti  190 (234)
T cd03251         112 ARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTT  190 (234)
T ss_pred             HHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEE
Confidence            0111245666666  67777888999999999999999999999999999999999999999999999999986 48899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++||+.. .+.. ||++++|++ |+++..++++++...
T Consensus       191 i~~sh~~~-~~~~-~d~v~~l~~-G~i~~~~~~~~~~~~  226 (234)
T cd03251         191 FVIAHRLS-TIEN-ADRIVVLED-GKIVERGTHEELLAQ  226 (234)
T ss_pred             EEEecCHH-HHhh-CCEEEEecC-CeEeeeCCHHHHHHc
Confidence            99999985 5654 999999988 888888998887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-44  Score=291.29  Aligned_cols=187  Identities=25%  Similarity=0.424  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.++ |   ++|+|+++|+++..     ...++.++|++|++.+++ +|+.||+.+.......
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~  113 (250)
T PRK14240         35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence            599999999999999998752 2   68999999998753     123567999999998887 8999999986432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus       114 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14240        114 --KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE  191 (250)
T ss_pred             --CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence              11223456778888888874    456889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+...||++++|++ |+++..|+++++..
T Consensus       192 ~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~  234 (250)
T PRK14240        192 LKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDTVDLFT  234 (250)
T ss_pred             Hhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            864 789999999974 68899999999988 88988898887653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.2e-45  Score=320.30  Aligned_cols=188  Identities=20%  Similarity=0.323  Sum_probs=158.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-cc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR-RT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~   74 (197)
                      +||||||||||+|+|+|+.+| |++|+|.++|+++....    .++.++|+||++.+++.+||.||+.+........ ..
T Consensus        33 iG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  112 (500)
T TIGR02633        33 CGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRM  112 (500)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcccccccccc
Confidence            699999999999999999873 37999999999885421    2356999999999999999999998764321100 01


Q ss_pred             cHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          75 TWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ......+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.
T Consensus       113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~  192 (500)
T TIGR02633       113 AYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV  192 (500)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            2233456788999999998664 678999999999999999999999999999999999999999999999999987789


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      |||++||+.. .+..+||++++|++ |+++..+++++
T Consensus       193 tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~  227 (500)
T TIGR02633       193 ACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST  227 (500)
T ss_pred             EEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence            9999999974 78899999999987 88887777654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=294.70  Aligned_cols=187  Identities=25%  Similarity=0.381  Sum_probs=155.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+.+  +  |++|+|.++|+++...     .+++.++|++|++.+++. |+.||+.+.......
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  131 (268)
T PRK14248         53 IGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGE  131 (268)
T ss_pred             ECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence            59999999999999999753  2  5899999999987531     234579999999988885 999999876432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus       132 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  209 (268)
T PRK14248        132 --RRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE  209 (268)
T ss_pred             --CcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence              11122345577788888874    456889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|||++||++. .+.++||++++|++ |++++.|+++++..
T Consensus       210 ~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~  252 (268)
T PRK14248        210 LKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQTEQIFT  252 (268)
T ss_pred             Hhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            965 689999999974 68899999999987 89988999887653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=291.33  Aligned_cols=187  Identities=25%  Similarity=0.414  Sum_probs=157.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.++    |++|+|.++|.++..     ..+++.++|++|++.+++ +|++||+.+.......
T Consensus        35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~  113 (250)
T PRK14262         35 IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV  113 (250)
T ss_pred             ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence            599999999999999999863    389999999998753     123467999999998887 7999999886533211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++..    ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       114 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14262        114 --KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE  191 (250)
T ss_pred             --CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence              112233456788899988853    46889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++.+
T Consensus       192 ~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  234 (250)
T PRK14262        192 LSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPTREIVE  234 (250)
T ss_pred             Hhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence            865 689999999974 68899999999987 88888999988754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-44  Score=290.80  Aligned_cols=188  Identities=32%  Similarity=0.430  Sum_probs=155.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|+++|.    ++|+|.++|.++..     ..+++.++|++|++.+++.+|+.||+.+.......
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~  115 (252)
T PRK14272         36 IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI  115 (252)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC
Confidence            5999999999999999998731    38999999998742     12345699999999999999999999876432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus       116 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        116 --RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             --CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence              11222345566777777653    456888999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       194 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  236 (252)
T PRK14272        194 LKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTDQLFT  236 (252)
T ss_pred             Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            864 689999999975 78889999999988 88989999887753

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-44  Score=293.84  Aligned_cols=187  Identities=25%  Similarity=0.345  Sum_probs=157.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|.++|.++...     ..++.++|+||++.+++ .||.||+.++......
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~  130 (267)
T PRK14237         52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV  130 (267)
T ss_pred             ECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC
Confidence            599999999999999999863    4899999999987431     23567999999998887 5999999886432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++++.+||+||+||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       131 --~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  208 (267)
T PRK14237        131 --KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE  208 (267)
T ss_pred             --CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              11223446678889999884    457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.++|++||++. .+.++||++++|++ |++++.|+++++..
T Consensus       209 ~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  251 (267)
T PRK14237        209 LKK-NYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKTRNIFT  251 (267)
T ss_pred             Hhc-CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence            964 689999999975 68899999999987 89999999988753

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-45  Score=320.61  Aligned_cols=189  Identities=25%  Similarity=0.336  Sum_probs=158.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHH--ccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAK--LTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~--~~~~   71 (197)
                      +||||||||||+|+|+|+++||++|+|+++|+++...    ..++.++|++|++   .+++.+||.||+.+...  ....
T Consensus       294 ~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~  373 (506)
T PRK13549        294 AGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG  373 (506)
T ss_pred             eCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence            6999999999999999998744899999999987532    1234689999995   47888999999987532  1100


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ........++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++++
T Consensus       374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~  453 (506)
T PRK13549        374 SRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ  453 (506)
T ss_pred             cccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH
Confidence            0011223446788999999996 578999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +|.|||++||+.. ++.++||++++|++ |+++..|+++++
T Consensus       454 ~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~  492 (506)
T PRK13549        454 QGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL  492 (506)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence            8999999999974 78899999999987 888888877665

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-45  Score=319.17  Aligned_cols=184  Identities=24%  Similarity=0.353  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...    .+++.++|++|++.+++.+||.||+.+............
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~  114 (501)
T PRK11288         36 MGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNR  114 (501)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCH
Confidence            69999999999999999998 7999999999987532    234679999999999999999999988532111000112


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+++.++++.+++....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++|.|+|
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii  194 (501)
T PRK11288        115 RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL  194 (501)
T ss_pred             HHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            33456788999999998888999999999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      ++||++. .+..+||++++|++ |+++..++
T Consensus       195 iitHd~~-~~~~~~d~i~~l~~-G~i~~~~~  223 (501)
T PRK11288        195 YVSHRME-EIFALCDAITVFKD-GRYVATFD  223 (501)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence            9999974 78899999999987 88776554

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=290.62  Aligned_cols=186  Identities=24%  Similarity=0.366  Sum_probs=155.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+|+|+|++++    |++|+|.++|+++..     ...++.++|++|++.+++ .||.||+.+.......
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~  114 (251)
T PRK14251         36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV  114 (251)
T ss_pred             ECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC
Confidence            599999999999999999862    379999999998742     123456999999998886 6999999876432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    ..+++++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.|++
T Consensus       115 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  192 (251)
T PRK14251        115 --KDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME  192 (251)
T ss_pred             --CCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence              11122345677889999984    456889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.|+|++||++. .+.++||++++|++ |+++..|+++++.
T Consensus       193 ~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~  234 (251)
T PRK14251        193 LKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPTEEMF  234 (251)
T ss_pred             HHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCHHHHH
Confidence            864 689999999974 68889999999987 8888889988775

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-44  Score=290.17  Aligned_cols=186  Identities=24%  Similarity=0.383  Sum_probs=155.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+++|+|+.++    +++|+|.++|.++..    ...++.++|++|++.+++ .||.||+.+....... 
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~-  112 (249)
T PRK14253         35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI-  112 (249)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC-
Confidence            599999999999999999873    269999999998742    234567999999999887 7999999876432211 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          73 RTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                       .......+.+.++++.+++.    +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|+++
T Consensus       113 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  191 (249)
T PRK14253        113 -KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL  191 (249)
T ss_pred             -CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence             11223345677788888874    4567889999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++ +.|||++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus       192 ~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  232 (249)
T PRK14253        192 KK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDTQVIF  232 (249)
T ss_pred             hc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence            76 589999999974 78899999999987 8998889888764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-44  Score=295.90  Aligned_cols=187  Identities=25%  Similarity=0.422  Sum_probs=155.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+  |  |++|+|.++|.++...     .+++.++|++|++.+++. ||.||+.+.......
T Consensus        71 ~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  149 (286)
T PRK14275         71 IGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI  149 (286)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC
Confidence            59999999999999999853  3  3899999999987421     235679999999988875 999999986533211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      .  ......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus       150 ~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  227 (286)
T PRK14275        150 N--DKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE  227 (286)
T ss_pred             C--cHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            1  1223345677888888873    567889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +.+||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       228 ~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~~~~~~  270 (286)
T PRK14275        228 LRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPTAQLFT  270 (286)
T ss_pred             Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            875 589999999974 67889999999987 88988999887753

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.8e-44  Score=318.79  Aligned_cols=190  Identities=25%  Similarity=0.309  Sum_probs=158.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCceeEEEEC-----------------------CeeCC-------c------ccccceE
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLN-----------------------GCPIS-------R------TVMSRIS   43 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~-----------------------g~~~~-------~------~~~~~~~   43 (197)
                      +||||||||||+|+|+|+++ +|++|+|.++                       |.++.       .      ..+++.+
T Consensus        32 iG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i  111 (520)
T TIGR03269        32 LGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRI  111 (520)
T ss_pred             ECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcE
Confidence            69999999999999999962 3799999997                       22221       0      1124568


Q ss_pred             EEEecC-CCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC
Q psy4235          44 GYVAQQ-DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ  122 (197)
Q Consensus        44 ~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~  122 (197)
                      +|+||+ +.+++.+||.||+.+......   .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus       112 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~  188 (520)
T TIGR03269       112 AIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF  188 (520)
T ss_pred             EEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            999997 678888999999988654321   1223445678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         123 ILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       123 llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      +|||||||++||+.++..+.++|++++++ |.|||++||+.. .+.++||++++|++ |+++..|+++++...+
T Consensus       189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~  260 (520)
T TIGR03269       189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPDEVVAVF  260 (520)
T ss_pred             EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHHHHHHHH
Confidence            99999999999999999999999999654 899999999974 67889999999987 8888889888776543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.4e-44  Score=319.50  Aligned_cols=188  Identities=25%  Similarity=0.320  Sum_probs=159.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-Cee---CCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCP---ISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~---~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+|+|+|+++ |++|+|.++ |.+   +...      ..++.++|+||++.+++.+||.||+.+..... 
T Consensus       316 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-  393 (520)
T TIGR03269       316 VGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-  393 (520)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-
Confidence            59999999999999999998 799999996 642   2211      12356899999999999999999998754321 


Q ss_pred             CccccHHHHHHHHHHHHHHcCCcc-----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINH-----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                         ......++.+.++++.+++.+     ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|
T Consensus       394 ---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l  470 (520)
T TIGR03269       394 ---LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI  470 (520)
T ss_pred             ---CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence               112223456889999999974     578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      ++++++ +.|||++||+.. .+..+||++++|++ |+++..|+++++.+.+
T Consensus       471 ~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~  519 (520)
T TIGR03269       471 LKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDPEEIVEEL  519 (520)
T ss_pred             HHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhc
Confidence            999765 899999999974 78899999999987 8888889998876643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=2.1e-44  Score=286.14  Aligned_cols=176  Identities=28%  Similarity=0.472  Sum_probs=152.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...      ..++.++|++|++.+++.+|+.||+.++......  .
T Consensus        37 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~--~  113 (220)
T TIGR02982        37 TGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN--L  113 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC--C
Confidence            59999999999999999988 7999999999987431      2346799999999999989999999986543311  1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~  153 (197)
                      ......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|+++++ .+.
T Consensus       114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~  193 (220)
T TIGR02982       114 SYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC  193 (220)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence            2233456788999999999889999999999999999999999999999999999999999999999999999986 489


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      |+|++||+..  ...+||++++|++ |++
T Consensus       194 tii~~sh~~~--~~~~~d~v~~l~~-g~~  219 (220)
T TIGR02982       194 TILIVTHDNR--ILDVADRIVHMED-GKL  219 (220)
T ss_pred             EEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence            9999999973  4689999999987 654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=2.9e-44  Score=293.23  Aligned_cols=187  Identities=24%  Similarity=0.274  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++...      ..++.++|++|++  .+++..|+.+|+.+......  
T Consensus        44 ~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--  120 (268)
T PRK10419         44 LGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--  120 (268)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--
Confidence            59999999999999999988 7999999999987431      2346799999997  46778899999876543211  


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ..........+.++++.+++. ...++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++++++
T Consensus       121 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~  200 (268)
T PRK10419        121 SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ  200 (268)
T ss_pred             cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence            111223445788999999997 5789999999999999999999999999999999999999999999999999999765


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                       +.|+|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       201 ~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~  240 (268)
T PRK10419        201 FGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGDKL  240 (268)
T ss_pred             cCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhhcc
Confidence             889999999974 77889999999987 8898899988765

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=5.7e-45  Score=292.35  Aligned_cols=183  Identities=28%  Similarity=0.421  Sum_probs=148.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.+++ .||.||+.++.....     ..
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-----~~  107 (238)
T cd03249          35 VGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDAT-----DE  107 (238)
T ss_pred             EeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCC-----HH
Confidence            59999999999999999998 7999999999887431   23456999999988876 599999987532110     11


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ....     .+.++++.+  ++....++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ 
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-  186 (238)
T cd03249         108 EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-  186 (238)
T ss_pred             HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence            1111     123344444  55666778899999999999999999999999999999999999999999999999987 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++.++|++||+.. .+. .||++++|++ |++++.++.+++...
T Consensus       187 ~g~~vi~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~~~~~~~  227 (238)
T cd03249         187 KGRTTIVIAHRLS-TIR-NADLIAVLQN-GQVVEQGTHDELMAQ  227 (238)
T ss_pred             CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEEeCCHHHHhhc
Confidence            7899999999975 554 8999999988 888888888877553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-44  Score=293.64  Aligned_cols=187  Identities=26%  Similarity=0.375  Sum_probs=157.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+++|+|+++|    |++|+|.++|.++...    .+++.++|++|++.+|+ +|+.+|+.+......  
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--  129 (276)
T PRK14271         53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--  129 (276)
T ss_pred             ECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--
Confidence            599999999999999999874    3799999999987531    23567999999998888 799999987643221  


Q ss_pred             cccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          73 RTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ..........+.++++.+++..    ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++
T Consensus       130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  209 (276)
T PRK14271        130 LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL  209 (276)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            1122233455678899999863    457889999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++ ..|+|++||+.. .+..+||++++|++ |+++..|+++++.+
T Consensus       210 ~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~  251 (276)
T PRK14271        210 AD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTEQLFS  251 (276)
T ss_pred             hc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            76 489999999974 78899999999997 89988999888754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-44  Score=289.13  Aligned_cols=186  Identities=26%  Similarity=0.411  Sum_probs=155.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+++|+|+++ |+     +|+|+++|.++..     ..+++.++|++|++.+++. |+.||+.+......
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~  113 (251)
T PRK14249         36 IGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG  113 (251)
T ss_pred             ECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC
Confidence            59999999999999999988 55     6999999998742     1345679999999998885 99999998654221


Q ss_pred             CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      .  .......+.+.++++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|+
T Consensus       114 ~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  191 (251)
T PRK14249        114 T--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ  191 (251)
T ss_pred             C--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            1  11122345577788888864    45788999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ ++.|||++||+.. .+...||++++|++ |++++.|+++++..
T Consensus       192 ~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  235 (251)
T PRK14249        192 ELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRTGEIFS  235 (251)
T ss_pred             HHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCHHHHHh
Confidence            985 5789999999974 78899999999987 88888899887753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=324.99  Aligned_cols=187  Identities=26%  Similarity=0.288  Sum_probs=159.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC----------c---c---cc-cceEEEEecCC--CCCCCCCHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----------R---T---VM-SRISGYVAQQD--FLIEELTVLEH   61 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~----------~---~---~~-~~~~~~v~q~~--~~~~~ltv~e~   61 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|..+.          .   .   .. ++.+|||+|++  .+++.+||.||
T Consensus        48 vG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~  126 (623)
T PRK10261         48 VGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQ  126 (623)
T ss_pred             ECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHH
Confidence            69999999999999999998 79999999987441          0   0   11 23689999997  68888999999


Q ss_pred             HHHHHHccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235          62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA  138 (197)
Q Consensus        62 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~  138 (197)
                      +.+....+.  ........+++.++++.+||.+   .+++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       127 l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~  204 (623)
T PRK10261        127 IAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ  204 (623)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHH
Confidence            998765321  1123344577889999999953   57899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         139 NNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       139 ~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      .++.++|++++++ |.|||++||+.. .+..+||++++|++ |++++.|++++++
T Consensus       205 ~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i~~~g~~~~~~  257 (623)
T PRK10261        205 AQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEAVETGSVEQIF  257 (623)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-CeecccCCHHHhh
Confidence            9999999999865 899999999974 78899999999987 8898889888775

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-44  Score=292.46  Aligned_cols=187  Identities=27%  Similarity=0.407  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|+++|.++..     ..+++.++|++|++.+|+. |+.||+.+.......
T Consensus        57 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  135 (272)
T PRK14236         57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI  135 (272)
T ss_pred             ECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence            599999999999999999873    489999999998753     1235679999999988886 999999876433211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        ......++.+.++++.+++.    +..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++
T Consensus       136 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  213 (272)
T PRK14236        136 --NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE  213 (272)
T ss_pred             --CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              11122345678889988885    356888999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.++|++||+.. .+.+.||++++|++ |+++..|+++++..
T Consensus       214 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  256 (272)
T PRK14236        214 LKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDTDTLFT  256 (272)
T ss_pred             HHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCHHHHhc
Confidence            975 689999999974 67889999999987 89988898887653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=3.8e-44  Score=290.10  Aligned_cols=188  Identities=24%  Similarity=0.306  Sum_probs=155.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-----CCccc-------ccceEEEEecCCC--CCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-----ISRTV-------MSRISGYVAQQDF--LIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-----~~~~~-------~~~~~~~v~q~~~--~~~~ltv~e~l~~~~   66 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.+     +....       .++.++|++|++.  +++.+|+.+|+.+..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~  113 (253)
T TIGR02323        35 VGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERL  113 (253)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHH
Confidence            59999999999999999988 799999999976     53211       1345899999974  456678999987643


Q ss_pred             HccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          67 KLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                      .....  .......+.+.++++.+++. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|
T Consensus       114 ~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l  191 (253)
T TIGR02323       114 MAIGA--RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL  191 (253)
T ss_pred             HHhcc--cchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            21110  01112346788999999997 5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++.++ +.++|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       192 ~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~~~~~~  238 (253)
T TIGR02323       192 RGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLTDQVLD  238 (253)
T ss_pred             HHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCHHHHhc
Confidence            998764 899999999974 77889999999987 88888898887653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-44  Score=293.17  Aligned_cols=187  Identities=25%  Similarity=0.381  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+++|+|+++  +  |++|+|.++|.++..     ...++.++|++|++.+++. |+.||+.++......
T Consensus        56 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~  134 (271)
T PRK14238         56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI  134 (271)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC
Confidence            59999999999999999976  2  589999999998742     1235679999999988875 999999986532211


Q ss_pred             ccccHHHHHHHHHHHHHHcC----CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.++    +.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       135 --~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        135 --KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             --CcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence              111223345667777764    44567889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       213 ~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~  255 (271)
T PRK14238        213 LKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDTDKIFS  255 (271)
T ss_pred             HHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHc
Confidence            975 689999999974 67889999999987 88988999887753

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-44  Score=294.43  Aligned_cols=184  Identities=23%  Similarity=0.396  Sum_probs=154.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|.++|+++..     ..+++.++|++|++.+++. ||.||+.+.......
T Consensus        71 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  149 (285)
T PRK14254         71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY  149 (285)
T ss_pred             ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC
Confidence            599999999999999999863    589999999998742     1345679999999988886 999999876543211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                         .. ...+++.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++
T Consensus       150 ---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~  225 (285)
T PRK14254        150 ---DG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE  225 (285)
T ss_pred             ---cH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence               11 2345688899999884    457889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEE-EEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVS-LLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg~i~~~g~~~~~~  192 (197)
                      ++++ .++|++||+.. .+..+||+++ +|++ |+++..|+++++.
T Consensus       226 ~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~~~~~  268 (285)
T PRK14254        226 LAEE-YTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDTDKIF  268 (285)
T ss_pred             HhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCHHHHH
Confidence            9764 79999999974 7888999975 5676 8888889888764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.7e-44  Score=318.22  Aligned_cols=188  Identities=27%  Similarity=0.383  Sum_probs=159.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||||||||+|+|+|+++  ++|+|+++|.++...      .+++.++|+||++  .+++.+||.||+.+....+.. 
T Consensus       318 ~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-  394 (529)
T PRK15134        318 VGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-  394 (529)
T ss_pred             ECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-
Confidence            69999999999999999973  799999999987431      1245689999997  488889999999886432210 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      .......++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++
T Consensus       395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  474 (529)
T PRK15134        395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK  474 (529)
T ss_pred             cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence            011223446788999999997 5789999999999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       +.|||++||+.. .+..+||++++|++ |+++..|+++++++
T Consensus       475 ~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  515 (529)
T PRK15134        475 HQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDCERVFA  515 (529)
T ss_pred             hCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCHHHHhc
Confidence             889999999974 78899999999997 88988999888753

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=319.03  Aligned_cols=185  Identities=21%  Similarity=0.351  Sum_probs=155.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecC---CCCCCCCCHHHHHHHHHHcc---C
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQ---DFLIEELTVLEHLQFMAKLT---M   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ltv~e~l~~~~~~~---~   70 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|+++...    ..++.++|+||+   ..+++.+||.||+.+.....   .
T Consensus       295 ~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~  373 (510)
T PRK09700        295 AGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY  373 (510)
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence            69999999999999999998 7999999999987431    124568999998   46889999999998753211   0


Q ss_pred             Cc--c-ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          71 DR--R-TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        71 ~~--~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      ..  . .......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~  453 (510)
T PRK09700        374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR  453 (510)
T ss_pred             cccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence            00  0 01122335678999999997 78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV  188 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~  188 (197)
                      +++++|.|||++|||.. .+..+||++++|++ |+++..++.
T Consensus       454 ~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  493 (510)
T PRK09700        454 QLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN  493 (510)
T ss_pred             HHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence            99877899999999974 78899999999988 888776654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-44  Score=290.52  Aligned_cols=188  Identities=22%  Similarity=0.382  Sum_probs=156.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--C--ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--L--VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~--~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+|+|+|++++  |  ++|+|.++|+++..     ..+++.++|++|++.+|+ +|+.||+.+...... 
T Consensus        39 ~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-  116 (259)
T PRK14260         39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-  116 (259)
T ss_pred             ECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-
Confidence            599999999999999999873  2  58999999998742     123456999999998888 799999987643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+.+.++++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus       117 -~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  195 (259)
T PRK14260        117 -KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS  195 (259)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence             011223345677889988873    467889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeC----CcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAH----GGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~----gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||++. .+.++||++++|+.    .|+++..|+++++.+
T Consensus       196 ~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  243 (259)
T PRK14260        196 LRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS  243 (259)
T ss_pred             Hhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence            865 589999999975 78899999999972    388999999988753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=7.6e-45  Score=289.99  Aligned_cols=183  Identities=27%  Similarity=0.420  Sum_probs=148.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|.++..   ..+++.++|++|++.+++. |+.||+.+.....     ...
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~~  107 (229)
T cd03254          35 VGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TDE  107 (229)
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CHH
Confidence            59999999999999999998 799999999988743   2345669999999988876 9999998753211     011


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ...+     .+.++++.+  ++....++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ 
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-  186 (229)
T cd03254         108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-  186 (229)
T ss_pred             HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence            1111     123344444  55556677789999999999999999999999999999999999999999999999986 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++.|+|++||+.. .+ ..||++++|++ |++++.|+.+++...
T Consensus       187 ~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~~~~~~~  227 (229)
T cd03254         187 KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTHDELLAK  227 (229)
T ss_pred             CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCHHHHHhh
Confidence            5899999999975 55 46999999987 888888888877654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=294.70  Aligned_cols=188  Identities=26%  Similarity=0.352  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHcc-CCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLT-MDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++.....++.++|++|++.+.  ...++.+|+.+..... ........
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  117 (272)
T PRK15056         39 VGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK  117 (272)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCH
Confidence            59999999999999999998 79999999999875322234589999997653  2346888876532110 00001112


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.|+|+
T Consensus       118 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii  197 (272)
T PRK15056        118 RDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV  197 (272)
T ss_pred             HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            23456788999999998899999999999999999999999999999999999999999999999999999877899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +||+.. .+.++||+++++ + |+++..|+++++.
T Consensus       198 vsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~~~  229 (272)
T PRK15056        198 STHNLG-SVTEFCDYTVMV-K-GTVLASGPTETTF  229 (272)
T ss_pred             EeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHhcc
Confidence            999974 688999999766 6 8888889888754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=317.28  Aligned_cols=188  Identities=21%  Similarity=0.315  Sum_probs=158.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccC-C-
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTM-D-   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~-~-   71 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|+++...    ..++.+||++|++   .+++.+||.||+.+...... . 
T Consensus       284 iG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~  362 (501)
T PRK10762        284 SGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA  362 (501)
T ss_pred             ecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence            69999999999999999998 7999999999987532    1345699999996   57888999999987532110 0 


Q ss_pred             -ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 -RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                       .........+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus       363 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  442 (501)
T PRK10762        363 GGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK  442 (501)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence             0011223345688999999995 67899999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++|.|+|++||+.. .+..+||++++|++ |+++..++++++
T Consensus       443 ~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~  482 (501)
T PRK10762        443 AEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA  482 (501)
T ss_pred             HCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence            78999999999974 78999999999987 888888877665

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.6e-44  Score=283.74  Aligned_cols=170  Identities=25%  Similarity=0.317  Sum_probs=149.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+......   .   ...
T Consensus        43 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~  115 (214)
T PRK13543         43 QGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAK  115 (214)
T ss_pred             EcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHH
Confidence            59999999999999999998 7999999999988643334568999999999999999999988654321   1   123


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++.+||+|||||++||||++.+|++|||||||++||+.+++.+.++|+++++++.|+|++||
T Consensus       116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH  195 (214)
T PRK13543        116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH  195 (214)
T ss_pred             HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            45678999999998889999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             CCcchHHhhcCeEEEEeC
Q psy4235         161 QPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~  178 (197)
                      +.. .+.++||+++++..
T Consensus       196 ~~~-~~~~~~~~i~~l~~  212 (214)
T PRK13543        196 GAY-AAPPVRTRMLTLEA  212 (214)
T ss_pred             Chh-hhhhhcceEEEEee
Confidence            975 78999999998853

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-44  Score=289.61  Aligned_cols=186  Identities=25%  Similarity=0.412  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+|+|+|+++|    +++|+|+++|+++..     ..+++.++|++|++.++ .+|+.||+.+.......
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~  118 (261)
T PRK14263         40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY  118 (261)
T ss_pred             ECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc
Confidence            599999999999999999873    379999999998742     12346699999999887 58999999987543211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                          .....+.+.++++.+++.+    ..++++.+||+||+||++|||||+.+|++|||||||+|||+.++.++.+.|++
T Consensus       119 ----~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~  194 (261)
T PRK14263        119 ----KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE  194 (261)
T ss_pred             ----hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence                1123457888999999853    34678899999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEe-------CCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLA-------HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~-------~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||++. .+..+||++++|+       ++|++++.|+++++++
T Consensus       195 ~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        195 LKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence            964 689999999974 6889999999996       3499999999988754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=3.8e-44  Score=317.23  Aligned_cols=188  Identities=23%  Similarity=0.337  Sum_probs=158.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCccc------cc-ceEEEEecCCC--CCCCCCHHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRTV------MS-RISGYVAQQDF--LIEELTVLEHLQFMAK   67 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~--~~~~ltv~e~l~~~~~   67 (197)
                      +||||||||||+|+|+|+++|    |++|+|.++|+++....      .+ +.+||+||++.  +++.+|+.+|+.+...
T Consensus        41 iG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~  120 (529)
T PRK15134         41 VGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS  120 (529)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH
Confidence            699999999999999999973    27999999999874321      12 46999999974  6777899999886543


Q ss_pred             ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      ...  ........+++.++++.++|.+   ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++
T Consensus       121 ~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~  198 (529)
T PRK15134        121 LHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL  198 (529)
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH
Confidence            211  1122344577889999999975   46889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |++++++ +.|+|++||+.. .+..+||++++|++ |+++..|++++++
T Consensus       199 l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~  245 (529)
T PRK15134        199 LRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAATLF  245 (529)
T ss_pred             HHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHh
Confidence            9999865 899999999974 78889999999997 8888889888764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=4.8e-45  Score=328.60  Aligned_cols=188  Identities=32%  Similarity=0.445  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|++. |++|+|++||.|+..   ..+|+.+|||+|++.+|.. |++||+.++......+.....
T Consensus       505 vG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A  582 (709)
T COG2274         505 VGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEA  582 (709)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHH
Confidence            69999999999999999999 799999999999854   4578899999999999998 999999986432211111111


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.+..+  |++........+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.++. +|+|+
T Consensus       583 ~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~  661 (709)
T COG2274         583 AQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTV  661 (709)
T ss_pred             HHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeE
Confidence            1122344455544  44556667788999999999999999999999999999999999999999999999986 47999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+++|++.  ..+.|||+++|++ |+++.+|+.+|++..
T Consensus       662 I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ell~~  697 (709)
T COG2274         662 IIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHEELLAQ  697 (709)
T ss_pred             EEEEccch--HhhhccEEEEccC-CceeccCCHHHHHHh
Confidence            99999974  5789999999987 999999999998764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.3e-46  Score=281.91  Aligned_cols=189  Identities=24%  Similarity=0.374  Sum_probs=171.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      ||||||||||||.+++.+++ .++|+|+++|.++..   ..+.+.++.+-|+..+...+||+|-+.|+..-+. ......
T Consensus        33 IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~  110 (252)
T COG4604          33 IGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTK  110 (252)
T ss_pred             ECCCCccHHHHHHHHHHhcc-ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCch
Confidence            69999999999999999888 799999999999864   3466788999999999999999999998754333 333455


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI  156 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii  156 (197)
                      +.+..+++.++.++|.+..+++..+||||||||..||+.++++.+.++||||.++||.....++++.|++++++ |+||+
T Consensus       111 eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktiv  190 (252)
T COG4604         111 EDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV  190 (252)
T ss_pred             HHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999987 99999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.||.+ ++..++|.++-|++ |+++..|+++|+++
T Consensus       191 iVlHDIN-fAS~YsD~IVAlK~-G~vv~~G~~~eii~  225 (252)
T COG4604         191 VVLHDIN-FASCYSDHIVALKN-GKVVKQGSPDEIIQ  225 (252)
T ss_pred             EEEeccc-HHHhhhhheeeecC-CEEEecCCHHHhcC
Confidence            9999986 89999999999998 99999999998764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-44  Score=290.40  Aligned_cols=185  Identities=22%  Similarity=0.378  Sum_probs=154.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|+|+|++.+    |++|+|+++|.++..     ...++.++|++|++.+++. |+.||+.+.......
T Consensus        42 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  120 (264)
T PRK14243         42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGY  120 (264)
T ss_pred             ECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCc
Confidence            599999999999999998752    379999999998742     2235669999999988884 999999886532211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                         . ....+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       121 ---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  196 (264)
T PRK14243        121 ---K-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE  196 (264)
T ss_pred             ---c-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence               1 12234566778887773    356788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEe---------CCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLA---------HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~---------~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|||++||+.. .+.++||++++|+         + |++++.|+++++..
T Consensus       197 ~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~~~~~~  248 (264)
T PRK14243        197 LKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRTEKIFN  248 (264)
T ss_pred             Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCHHHHHh
Confidence            976 489999999974 7899999999998         5 89999999988753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.4e-44  Score=316.56  Aligned_cols=187  Identities=25%  Similarity=0.337  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHH--ccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAK--LTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~--~~~~   71 (197)
                      +||||||||||+|+|+|+++|+++|+|+++|+++...    ..++.++|++|++   .+++.+||.+|+.+...  ....
T Consensus       292 ~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~  371 (500)
T TIGR02633       292 AGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK  371 (500)
T ss_pred             eCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccC
Confidence            6999999999999999998744899999999987531    2345689999995   58899999999987532  1100


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          72 RRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ........++.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++
T Consensus       372 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~  451 (500)
T TIGR02633       372 MRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ  451 (500)
T ss_pred             CcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh
Confidence            01112233467889999999974 68999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVS  189 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~  189 (197)
                      +|.|||++|||.. ++..+||++++|++ |+++...+.+
T Consensus       452 ~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~  488 (500)
T TIGR02633       452 EGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH  488 (500)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence            8999999999974 78899999999987 8887766544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=317.61  Aligned_cols=188  Identities=21%  Similarity=0.292  Sum_probs=158.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCc-
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDR-   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~-   72 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|+++...    ..++.++|++|++   .+++.+|+.||+.+........ 
T Consensus       285 iG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~  363 (501)
T PRK11288        285 FGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA  363 (501)
T ss_pred             EcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc
Confidence            69999999999999999998 7999999999987421    1235689999986   4888899999998743211000 


Q ss_pred             c--ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          73 R--TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        73 ~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .  ......++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus       364 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~  443 (501)
T PRK11288        364 GCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA  443 (501)
T ss_pred             ccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence            0  01122335678999999994 67899999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++|.+||++|||.. ++.++||++++|.+ |++++.|++++.
T Consensus       444 ~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~  483 (501)
T PRK11288        444 AQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA  483 (501)
T ss_pred             hCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence            88999999999974 78999999999987 888888877653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.7e-44  Score=347.55  Aligned_cols=190  Identities=25%  Similarity=0.374  Sum_probs=169.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++..  ...++.+||+||++.+++.+||+||+.+.+..+..   ..+.
T Consensus      1971 LG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~---~~~~ 2046 (2272)
T TIGR01257      1971 LGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV---PAEE 2046 (2272)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC---CHHH
Confidence            69999999999999999998 799999999999853  22456799999999999999999999987655321   2233


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .++.++++++.++|.+..++++++||||||||++||+||+.+|++|||||||+||||.+++.++++|++++++|++||++
T Consensus      2047 ~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt 2126 (2272)
T TIGR01257      2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126 (2272)
T ss_pred             HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999998789999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ||++ +++..+|||+++|.+ |++...|+++++...|.
T Consensus      2127 TH~m-ee~e~lcDrV~IL~~-G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2127 SHSM-EECEALCTRLAIMVK-GAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             eCCH-HHHHHhCCEEEEEEC-CEEEEECCHHHHHHHhC
Confidence            9997 479999999999997 99999999999987653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=286.41  Aligned_cols=187  Identities=24%  Similarity=0.355  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+ .|   ++|+|.++|+++..     ..+++.++|++|++.+++ .|+.+|+.+.......
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~  115 (252)
T PRK14255         37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV  115 (252)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC
Confidence            59999999999999999864 13   58999999998742     123467999999998888 6999999886432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      .  ......+.+.+.++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       116 ~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14255        116 K--DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE  193 (252)
T ss_pred             C--CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            1  1112234566778887763    456889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+..+||++++|++ |+++..|++.++..
T Consensus       194 ~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~  236 (252)
T PRK14255        194 LRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADTKQMFL  236 (252)
T ss_pred             HHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            976 489999999974 78899999999987 88988898887653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=288.09  Aligned_cols=188  Identities=25%  Similarity=0.395  Sum_probs=157.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +|+||||||||+++|+|+++ |+     +|+|.++|+++..     ..+++.++|++|++.+++ +|+.||+.+......
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~  116 (261)
T PRK14258         39 IGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG  116 (261)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC
Confidence            59999999999999999988 54     8999999998732     123566999999988888 899999987643221


Q ss_pred             CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      .  .......+.+.++++.+++.    +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus       117 ~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~  194 (261)
T PRK14258        117 W--RPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ  194 (261)
T ss_pred             C--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            0  11223345678899999874    35688899999999999999999999999999999999999999999999999


Q ss_pred             HHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCC----cEEEEecChhHHHh
Q psy4235         147 QLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHG----GLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~g----g~i~~~g~~~~~~~  193 (197)
                      +++. ++.|+|++||++. .+.++||++++|+++    |+++..|+++++..
T Consensus       195 ~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        195 SLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN  245 (261)
T ss_pred             HHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence            9875 4899999999974 788999999999863    78888899988753

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.4e-44  Score=316.23  Aligned_cols=189  Identities=22%  Similarity=0.265  Sum_probs=157.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|.++....    .++.++|+||++   .+++.+|+.+|+...........
T Consensus       295 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~  373 (510)
T PRK15439        295 AGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW  373 (510)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccc
Confidence            69999999999999999988 79999999999875321    234689999984   48888999999864311100000


Q ss_pred             ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          74 TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                      ......++.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++|
T Consensus       374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g  453 (510)
T PRK15439        374 IKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN  453 (510)
T ss_pred             cChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC
Confidence            01122345688999999997 78899999999999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      .+||++|||.. ++.++||++++|++ |+++..|+++++.
T Consensus       454 ~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~~~  491 (510)
T PRK15439        454 VAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAAIN  491 (510)
T ss_pred             CEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccccCC
Confidence            99999999974 78999999999987 8888888776543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=286.72  Aligned_cols=186  Identities=24%  Similarity=0.402  Sum_probs=155.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+..+ |   ++|+|.++|+++...     ..++.++|++|++.+++. ||+||+.+.......
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~  116 (253)
T PRK14261         38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE  116 (253)
T ss_pred             ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC
Confidence            599999999999999998652 2   489999999987531     234569999999988885 999999986543211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        ......++.+.++++.+++.    +..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|++
T Consensus       117 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  194 (253)
T PRK14261        117 --KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED  194 (253)
T ss_pred             --CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              11223345677888888874    356889999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.|+|++||+.. .+.+.||++++|++ |+++..|+++++.
T Consensus       195 ~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~  236 (253)
T PRK14261        195 LKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKTTQIF  236 (253)
T ss_pred             Hhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCHHHHH
Confidence            975 589999999974 67889999999987 8888889988775

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=5.8e-44  Score=277.59  Aligned_cols=159  Identities=27%  Similarity=0.419  Sum_probs=135.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...     .+++.++|++|++. .+...||.||+.+......   .
T Consensus        24 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~---~   99 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG---L   99 (190)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC---C
Confidence            59999999999999999998 7999999999987421     23456899999973 2334699999988643221   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.++|+++++++.+
T Consensus       100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t  179 (190)
T TIGR01166       100 SEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT  179 (190)
T ss_pred             CHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence            22334457889999999998899999999999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCc
Q psy4235         155 VICAIHQPT  163 (197)
Q Consensus       155 iii~th~~~  163 (197)
                      +|++||++.
T Consensus       180 ili~sH~~~  188 (190)
T TIGR01166       180 VVISTHDVD  188 (190)
T ss_pred             EEEEeeccc
Confidence            999999964

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=296.43  Aligned_cols=187  Identities=23%  Similarity=0.351  Sum_probs=156.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.++    |++|+|.++|.++..     ..+++.++|+||++.+|+ .|++||+.|...... 
T Consensus       114 vG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~-  191 (329)
T PRK14257        114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG-  191 (329)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC-
Confidence            599999999999999999752    479999999999852     234567999999999886 699999998643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       ........+.+.++++.+++.    ...++++.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++
T Consensus       192 -~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~  270 (329)
T PRK14257        192 -INDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE  270 (329)
T ss_pred             -CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence             111122234467788888763    456789999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.+ +.|+|++||++. .+.++||++++|++ |++++.|++++++.
T Consensus       271 l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~~~l~~  313 (329)
T PRK14257        271 LKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGETKTIFI  313 (329)
T ss_pred             Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            875 689999999974 67888999999987 99999999999864

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6e-44  Score=280.48  Aligned_cols=168  Identities=32%  Similarity=0.389  Sum_probs=146.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..  ...++.++|++|++.+++.+|+.||+.+.......      .
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~  105 (204)
T PRK13538         33 EGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------G  105 (204)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------c
Confidence            59999999999999999998 799999999998753  22446689999999999999999999887543211      1


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|+++++++.|+|++
T Consensus       106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~  185 (204)
T PRK13538        106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT  185 (204)
T ss_pred             HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            23568889999999888899999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEE
Q psy4235         159 IHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l  176 (197)
                      ||+.. .+..+.+|++++
T Consensus       186 sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        186 THQDL-PVASDKVRKLRL  202 (204)
T ss_pred             ecChh-hhccCCceEEec
Confidence            99975 676766777665

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.7e-44  Score=288.00  Aligned_cols=187  Identities=25%  Similarity=0.386  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++..   ..+++.++|++|++.+++ .|+.||+.++............
T Consensus        33 ~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~  110 (236)
T cd03253          33 VGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEA  110 (236)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHH
Confidence            59999999999999999988 799999999998753   233456999999998886 5999999875321100000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++.+  ++....++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.++
T Consensus       111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ti  189 (236)
T cd03253         111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTT  189 (236)
T ss_pred             HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEE
Confidence            0001223444444  555666778899999999999999999999999999999999999999999999999976 8999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+. .||++++|++ |+++..|+.+++..
T Consensus       190 ii~sh~~~-~~~-~~d~~~~l~~-g~i~~~~~~~~~~~  224 (236)
T cd03253         190 IVIAHRLS-TIV-NADKIIVLKD-GRIVERGTHEELLA  224 (236)
T ss_pred             EEEcCCHH-HHH-hCCEEEEEEC-CEEEeeCCHHHHhh
Confidence            99999975 554 5999999998 88888888877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.1e-43  Score=278.71  Aligned_cols=159  Identities=31%  Similarity=0.509  Sum_probs=136.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|++++  |++|+|.++|.++...  ..++.++|++|++.+++.+||+||+.+.....       
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------  111 (202)
T cd03233          39 LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------  111 (202)
T ss_pred             ECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------
Confidence            699999999999999999873  5899999999987542  34567999999999999999999998653110       


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                                         .++++..||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +.++
T Consensus       112 -------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~  172 (202)
T cd03233         112 -------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT  172 (202)
T ss_pred             -------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence                               56778899999999999999999999999999999999999999999999999765 5677


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      |+++||..+.+.+.||++++|++ |+++..|
T Consensus       173 ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g  202 (202)
T cd03233         173 FVSLYQASDEIYDLFDKVLVLYE-GRQIYYG  202 (202)
T ss_pred             EEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence            77777654568899999999998 8887543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-43  Score=285.51  Aligned_cols=186  Identities=20%  Similarity=0.373  Sum_probs=156.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+..  +  |++|+|.++|.++..     ...++.++|+||++.+|+. |+.||+.+...... 
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-  112 (250)
T PRK14266         35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-  112 (250)
T ss_pred             ECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-
Confidence            59999999999999999863  2  389999999998743     1235679999999998885 99999987643221 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       .......++.+.++++.+++.    +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus       113 -~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        113 -EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence             111223456788899999874    346788999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++ +.|+|++||+.. .+...||++++|++ |++++.|+++++.
T Consensus       192 ~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~~~~  233 (250)
T PRK14266        192 LKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTDQIF  233 (250)
T ss_pred             Hhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHHHHH
Confidence            964 789999999974 78999999999987 8998999998875

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3.1e-44  Score=284.89  Aligned_cols=170  Identities=32%  Similarity=0.480  Sum_probs=142.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++..   ...++.++|++|++.+++ .|+.||+.+....     ..  
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~--  106 (220)
T cd03245          36 IGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD--  106 (220)
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC--
Confidence            59999999999999999988 799999999998743   123456899999998887 5999998764211     01  


Q ss_pred             HHHHHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQVQ-----------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ...+.++++.+++.+..++.           +.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|+
T Consensus       107 --~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  184 (220)
T cd03245         107 --DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR  184 (220)
T ss_pred             --HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence              23456778888887666654           46999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      +++++ .|+|++||+.. .+ ++||+++++++ |++++.
T Consensus       185 ~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~-g~i~~~  219 (220)
T cd03245         185 QLLGD-KTLIIITHRPS-LL-DLVDRIIVMDS-GRIVAD  219 (220)
T ss_pred             HhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeC-CeEeec
Confidence            98764 89999999975 44 79999999987 777654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=8.9e-44  Score=283.50  Aligned_cols=178  Identities=26%  Similarity=0.398  Sum_probs=147.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++...   .+++.++|++|++.+++. |+.||+.+.......   .  
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~--  111 (225)
T PRK10247         39 TGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---Q--  111 (225)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---C--
Confidence            59999999999999999988 7999999999987532   234678999999988875 999999875433211   1  


Q ss_pred             HHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235          78 ELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i  155 (197)
                      ...+.+.++++.+++. ...++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.++|++++++ +.++
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv  191 (225)
T PRK10247        112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV  191 (225)
T ss_pred             hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            1234577899999996 5789999999999999999999999999999999999999999999999999998764 8899


Q ss_pred             EEEecCCcchHHhhcCeEEEEe-CCcEEEEecCh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLA-HGGLLAYHGQV  188 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~-~gg~i~~~g~~  188 (197)
                      |++||+.. .+ ..||++++|+ ++|++ .+|+.
T Consensus       192 ii~sh~~~-~~-~~~d~i~~l~~~~~~~-~~~~~  222 (225)
T PRK10247        192 LWVTHDKD-EI-NHADKVITLQPHAGEM-QEARY  222 (225)
T ss_pred             EEEECChH-HH-HhCCEEEEEecccchH-hhhhh
Confidence            99999975 55 4699999996 43444 44543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.2e-44  Score=320.42  Aligned_cols=181  Identities=28%  Similarity=0.387  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|++ | ++|+|.+||.++..   ..+++.++||+|++.+|+. |++||+.++...     ...+
T Consensus       382 vG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~-----~~~e  453 (588)
T PRK11174        382 VGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPD-----ASDE  453 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCC-----CCHH
Confidence            6999999999999999998 4 79999999999854   3567889999999999987 999999986321     1111


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+     .+++.++.+  |++.........||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. 
T Consensus       454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-  532 (588)
T PRK11174        454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-  532 (588)
T ss_pred             HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence            1111     223344444  45555555667899999999999999999999999999999999999999999999885 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++|+|++||++.  ....||+|++|++ |++++.|+.+++++
T Consensus       533 ~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~~eL~~  572 (588)
T PRK11174        533 RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDYAELSQ  572 (588)
T ss_pred             CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCHHHHHh
Confidence            4789999999973  4677999999987 99999999999874

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=3.5e-43  Score=284.23  Aligned_cols=187  Identities=21%  Similarity=0.278  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHhcC--cCCCceeEEEECCeeCCcc---cccc-eEEEEecCCCCCCCCCHHHHHHHHHHccCC---
Q psy4235           1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRT---VMSR-ISGYVAQQDFLIEELTVLEHLQFMAKLTMD---   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~--~~~~~~G~i~~~g~~~~~~---~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~---   71 (197)
                      +|+||||||||+++|+|+  ++ |++|+|+++|.++...   ..++ .++|++|++.+++.+|+.+|+.+.......   
T Consensus        39 ~G~nGsGKSTLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~  117 (252)
T CHL00131         39 MGPNGSGKSTLSKVIAGHPAYK-ILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG  117 (252)
T ss_pred             ECCCCCCHHHHHHHHcCCCcCc-CCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccc
Confidence            599999999999999997  35 7999999999987532   1222 478999999999999999999875432100   


Q ss_pred             -ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          72 -RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        72 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                       .........+.+.++++.+++. ...++++. .|||||+||++|||||+.+|++|||||||++||+.+++.+.++|+++
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  197 (252)
T CHL00131        118 LPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL  197 (252)
T ss_pred             cccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence             0011122345678899999997 46788887 59999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhH
Q psy4235         149 ACESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      ++++.|+|++||+.. .+... ||++++|++ |++++.|+++.
T Consensus       198 ~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~-G~i~~~~~~~~  238 (252)
T CHL00131        198 MTSENSIILITHYQR-LLDYIKPDYVHVMQN-GKIIKTGDAEL  238 (252)
T ss_pred             HhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-CEEEEecChhh
Confidence            877899999999974 56666 899999987 89989998863

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.5e-43  Score=339.64  Aligned_cols=195  Identities=38%  Similarity=0.643  Sum_probs=168.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||||+|+|+.++  +++|+|.+||+++.. .+++.+|||+|++.+++.+||+||+.|.+..+........+
T Consensus       795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~  873 (1394)
T TIGR00956       795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE  873 (1394)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHH
Confidence            699999999999999999862  478999999999853 45677999999998999999999999987654322223334


Q ss_pred             HHHHHHHHHHHcCCcccccccCC----CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          79 LNKTITRVMENLGINHRRQVQIS----GLSGGQRKRLALAVQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~----~LSgGq~qrv~ia~al~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ..+.++++++.++|.+.+++.++    +||||||||++||++|+.+|+ +|||||||+|||+.++..+.+.|++++++|+
T Consensus       874 ~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~  953 (1394)
T TIGR00956       874 KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ  953 (1394)
T ss_pred             HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence            45678999999999998998887    799999999999999999997 9999999999999999999999999988899


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh----hHHHhhhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV----SKVLKHFA  196 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~----~~~~~~~~  196 (197)
                      |||+++|++...+.+.||++++|++||++++.|++    +++.++|.
T Consensus       954 tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~ 1000 (1394)
T TIGR00956       954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE 1000 (1394)
T ss_pred             EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHH
Confidence            99999999875456889999999986699999987    44566553

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.4e-43  Score=306.80  Aligned_cols=191  Identities=27%  Similarity=0.376  Sum_probs=165.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC---ceeEEEECCeeCCc---c----cccceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR---T----VMSRISGYVAQQD--FLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~---~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~   68 (197)
                      +|.|||||||+.++|.|++++.   .+|+|.|+|.++..   .    .+.+.|+|+||++  .+.|-+|+.+.+.-....
T Consensus        41 vGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~  120 (539)
T COG1123          41 VGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL  120 (539)
T ss_pred             EcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH
Confidence            6999999999999999999843   38999999998632   1    1235799999996  466779999999887766


Q ss_pred             cCCccccHHHHHHHHHHHHHHcCCccccc--ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          69 TMDRRTTWLELNKTITRVMENLGINHRRQ--VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      +...  ..++.++++.++|+.++|.+...  ++|.+|||||||||.||+||+.+|++||+||||++||+..+.+|+++|+
T Consensus       121 h~~~--~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk  198 (539)
T COG1123         121 HGKG--SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLK  198 (539)
T ss_pred             hccc--cHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHH
Confidence            5421  25567788999999999986654  4999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         147 QLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       147 ~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      ++.++ |.++|++|||+ ..+.++|||++||.+ |++++.|++++++..+
T Consensus       199 ~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~-G~iVE~G~~~~i~~~p  246 (539)
T COG1123         199 DLQRELGMAVLFITHDL-GVVAELADRVVVMYK-GEIVETGPTEEILSNP  246 (539)
T ss_pred             HHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEEC-CEEEEecCHHHHHhcc
Confidence            99854 89999999997 589999999999998 9999999999998753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.3e-43  Score=343.87  Aligned_cols=189  Identities=28%  Similarity=0.498  Sum_probs=168.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...  ..++.+||+||++.+++.+||+||+.++...+..   ...+
T Consensus       962 LG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~---~~~~ 1037 (2272)
T TIGR01257       962 LGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR---SWEE 1037 (2272)
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC---CHHH
Confidence            69999999999999999998 7999999999998532  3456799999999999999999999997665321   2234


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .+++++++++.++|.+..++++++||||||||++||+||+.+|++|||||||+|||+.+++.+.++|++++ +|++||++
T Consensus      1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIlt 1116 (2272)
T TIGR01257      1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMS 1116 (2272)
T ss_pred             HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999995 58999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ||++. ++..+|||+++|++ |+++..|++.++.+.|.
T Consensus      1117 THdmd-ea~~laDrI~iL~~-GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257      1117 THHMD-EADLLGDRIAIISQ-GRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred             ECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHHhcC
Confidence            99974 78899999999997 89999999999887653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-43  Score=288.82  Aligned_cols=186  Identities=24%  Similarity=0.353  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.++ |   ++|+|.++|+++..     ..+++.++|+||++.+++. |+.||+.+.......
T Consensus        52 iG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~  130 (274)
T PRK14265         52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGY  130 (274)
T ss_pred             ECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCc
Confidence            599999999999999999752 2   68999999998742     1235679999999988875 999999876432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                         . ....+.+.+.++.+++.    +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus       131 ---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  206 (274)
T PRK14265        131 ---K-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE  206 (274)
T ss_pred             ---h-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence               1 11234466778887763    456789999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEe--------CCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLA--------HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~--------~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.+||++||+.. .+..+||++++|+        ..|+++..|+++++..
T Consensus       207 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~  258 (274)
T PRK14265        207 LKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFG  258 (274)
T ss_pred             Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence            975 689999999974 7889999999997        1489999999988753

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.1e-43  Score=278.47  Aligned_cols=165  Identities=29%  Similarity=0.403  Sum_probs=145.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|+||||||||+++|+|+++ |++|+|.++|.++..  ...++.++|++|++.+++.+|++||+.+.....         
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------  101 (201)
T cd03231          32 TGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH---------  101 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc---------
Confidence            59999999999999999988 799999999998743  234567999999999998999999998753210         


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus       102 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~  181 (201)
T cd03231         102 SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT  181 (201)
T ss_pred             cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            23567889999999988899999999999999999999999999999999999999999999999999988778999999


Q ss_pred             ecCCcchHHhhcCeEEEE
Q psy4235         159 IHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l  176 (197)
                      ||++. .....|++++++
T Consensus       182 sH~~~-~~~~~~~~~~~~  198 (201)
T cd03231         182 THQDL-GLSEAGARELDL  198 (201)
T ss_pred             ecCch-hhhhccceeEec
Confidence            99975 678899999876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.6e-43  Score=339.30  Aligned_cols=196  Identities=38%  Similarity=0.644  Sum_probs=168.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+.++ +.+|+|.++|.+......++.+||++|++.+++.+||+||+.|.+..+........+.
T Consensus       912 ~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~  991 (1470)
T PLN03140        912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEK  991 (1470)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHH
Confidence            699999999999999998652 3689999999987544455678999999999999999999999865442222233344


Q ss_pred             HHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          80 NKTITRVMENLGINHRRQVQI-----SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      .+.++++++.++|.+..++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus       992 ~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140        992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred             HHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence            567899999999998888876     589999999999999999999999999999999999999999999999988999


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh----hHHHhhhh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV----SKVLKHFA  196 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~----~~~~~~~~  196 (197)
                      ||+++|++...+.+.||++++|++||++++.|++    +++.++|+
T Consensus      1072 VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140       1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFE 1117 (1470)
T ss_pred             EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHH
Confidence            9999999864578999999999877899999986    45666664

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-44  Score=265.62  Aligned_cols=185  Identities=28%  Similarity=0.337  Sum_probs=161.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+|.+.=+.- |.+|+..|-|...+  .       ..+++.+|+|||+-.++|.+||.||+......-  
T Consensus        34 lgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv--  110 (242)
T COG4161          34 LGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV--  110 (242)
T ss_pred             ECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHH--
Confidence            59999999999999986555 79999999887653  1       135677999999999999999999997643211  


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ...+..+...++.++++++.|.+++++.|-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++...
T Consensus       111 ~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t  190 (242)
T COG4161         111 LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET  190 (242)
T ss_pred             hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc
Confidence            12334556678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      |.|-+++||... .+.+.+.+|++|++ |+|++.|+.+-
T Consensus       191 gitqvivthev~-va~k~as~vvyme~-g~ive~g~a~~  227 (242)
T COG4161         191 GITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDASC  227 (242)
T ss_pred             CceEEEEEeehh-HHHhhhhheEeeec-CeeEeecchhh
Confidence            999999999974 78999999999998 99999887653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=7.4e-43  Score=284.28  Aligned_cols=179  Identities=19%  Similarity=0.263  Sum_probs=154.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.          +++++|.+.+++.+|+.+|+.+......   .......
T Consensus        56 iG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~  121 (264)
T PRK13546         56 VGINGSGKSTLSNIIGGSLS-PTVGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIK  121 (264)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHH
Confidence            69999999999999999998 79999999985          3567787777888999999987543221   1223344


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+..+++.+++.+..++++.+||+||+||++|||||+.+|++|||||||++||+.++..+.+.|.++++++.|+|++||
T Consensus       122 ~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH  201 (264)
T PRK13546        122 AMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH  201 (264)
T ss_pred             HHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            56778889999998899999999999999999999999999999999999999999999999999999877899999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      +.. .+..+||++++|++ |++...|+++++...+
T Consensus       202 ~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~~~  234 (264)
T PRK13546        202 NLG-QVRQFCTKIAWIEG-GKLKDYGELDDVLPKY  234 (264)
T ss_pred             CHH-HHHHHcCEEEEEEC-CEEEEeCCHHHHHHHh
Confidence            974 67889999999987 8888899998876543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=2.4e-43  Score=275.21  Aligned_cols=151  Identities=53%  Similarity=0.857  Sum_probs=134.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc--CCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~--~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|++  + |++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+....          
T Consensus        41 ~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~----------  109 (194)
T cd03213          41 MGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL----------  109 (194)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh----------
Confidence            5999999999999999998  7 79999999999986544456799999999999999999999764210          


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                           .                 +||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus       110 -----~-----------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~  167 (194)
T cd03213         110 -----R-----------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS  167 (194)
T ss_pred             -----c-----------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence                 0                 799999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ||++...+...||++++|++ |++++.
T Consensus       168 sh~~~~~~~~~~d~v~~l~~-G~i~~~  193 (194)
T cd03213         168 IHQPSSEIFELFDKLLLLSQ-GRVIYF  193 (194)
T ss_pred             ecCchHHHHHhcCEEEEEeC-CEEEec
Confidence            99974357789999999987 887654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-44  Score=274.36  Aligned_cols=189  Identities=29%  Similarity=0.363  Sum_probs=164.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||||.|+|.+. |++|++.++|.+++..   .+.+.-+.+||+..+-+.+||.|-+.++..-+.. .....
T Consensus        33 lGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~  110 (259)
T COG4559          33 LGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPE  110 (259)
T ss_pred             ECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCch
Confidence            69999999999999999998 7999999999998643   3455669999998877677999999997643321 11222


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      +..+.+.++|...++..+..+...+|||||||||.+||.|++      ++++|+||||||+||...+..++++.++++++
T Consensus       111 e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~  190 (259)
T COG4559         111 EDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE  190 (259)
T ss_pred             hhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc
Confidence            445668899999999999999999999999999999999985      45689999999999999999999999999999


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |..|+.+-||.+ .+..+|||+++|++ |+++..|+|++++.
T Consensus       191 g~~V~~VLHDLN-LAA~YaDrivll~~-Grv~a~g~p~~vlt  230 (259)
T COG4559         191 GGAVLAVLHDLN-LAAQYADRIVLLHQ-GRVIASGSPQDVLT  230 (259)
T ss_pred             CCcEEEEEccch-HHHHhhheeeeeeC-CeEeecCCHHHhcC
Confidence            999999999986 78999999999987 99999999998764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-43  Score=284.59  Aligned_cols=187  Identities=28%  Similarity=0.438  Sum_probs=155.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC------eeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG------CPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g------~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|      .++..   ..+++.++|++|++.+++.+|+.+|+.+.......
T Consensus        42 ~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~  120 (257)
T PRK14246         42 MGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI  120 (257)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC
Confidence            59999999999999999988 6886666655      44422   12356799999999999999999999986432211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                        .......+.+.++++.+++.    +..++.+..||+|||||++|||||+.+|+++||||||++||+.++..+.+.|++
T Consensus       121 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~  198 (257)
T PRK14246        121 --KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE  198 (257)
T ss_pred             --CCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence              11223446688899999985    356789999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +.|+|++||+.. .+...||++++|++ |+++..|+++++..
T Consensus       199 ~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~~~~~  241 (257)
T PRK14246        199 LKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSNEIFT  241 (257)
T ss_pred             Hhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            865 689999999974 67799999999987 89988999887754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=4.1e-43  Score=279.59  Aligned_cols=171  Identities=25%  Similarity=0.314  Sum_probs=144.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|+++|+++..         ..+...+++.+||.||+.+......   .......
T Consensus        54 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~  120 (224)
T cd03220          54 IGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL---------LGLGGGFNPELTGRENIYLNGRLLG---LSRKEID  120 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchh---------hcccccCCCCCcHHHHHHHHHHHcC---CCHHHHH
Confidence            59999999999999999988 799999999987531         1112345567899999988654321   1122334


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus       121 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH  200 (224)
T cd03220         121 EKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH  200 (224)
T ss_pred             HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            56788999999998899999999999999999999999999999999999999999999999999999877889999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      +.. .+..+||++++|++ |+++..|
T Consensus       201 ~~~-~~~~~~d~i~~l~~-G~i~~~g  224 (224)
T cd03220         201 DPS-SIKRLCDRALVLEK-GKIRFDG  224 (224)
T ss_pred             CHH-HHHHhCCEEEEEEC-CEEEecC
Confidence            974 67889999999987 8886643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=2.8e-43  Score=280.15  Aligned_cols=171  Identities=25%  Similarity=0.309  Sum_probs=143.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEEC--Ce--eCCcc---c----ccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN--GC--PISRT---V----MSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~--g~--~~~~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+++|+|+++ |++|+|.++  |.  ++...   .    .++.++|++|++.+++.+||.||+.+.....
T Consensus        40 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  118 (224)
T TIGR02324        40 SGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER  118 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc
Confidence            59999999999999999998 799999998  43  43211   1    1346899999999999999999998754322


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .   .......+.+.++++.+++.+ ..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++
T Consensus       119 ~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  195 (224)
T TIGR02324       119 G---VPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA  195 (224)
T ss_pred             C---CCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            1   112233457788999999976 457899999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ++++.|+|++||+. +.+..+||+++.+
T Consensus       196 ~~~g~tii~vsH~~-~~~~~~~d~i~~~  222 (224)
T TIGR02324       196 KARGAALIGIFHDE-EVRELVADRVMDV  222 (224)
T ss_pred             HhcCCEEEEEeCCH-HHHHHhcceeEec
Confidence            87789999999996 4677899999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-43  Score=304.10  Aligned_cols=184  Identities=24%  Similarity=0.346  Sum_probs=163.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccC-Ccccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~   75 (197)
                      +|.||||||||+|+|+|.++ |++|+|+++|+++...    ....-|+.|+|+.+++|+|||.||+.++..... ....+
T Consensus        40 ~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id  118 (500)
T COG1129          40 LGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID  118 (500)
T ss_pred             ecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccC
Confidence            69999999999999999998 7999999999998532    223458999999999999999999987654322 22346


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ++...+.+.++|+.+++....+.++++||.||||.|+||||+..++++||||||||+|+....+.+++++++++++|.++
T Consensus       119 ~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~i  198 (500)
T COG1129         119 RKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAI  198 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence            67888899999999999655899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      |++||.+. +++++|||+.||.+ |+.+...+
T Consensus       199 i~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~  228 (500)
T COG1129         199 IYISHRLD-EVFEIADRITVLRD-GRVVGTRP  228 (500)
T ss_pred             EEEcCcHH-HHHHhcCEEEEEeC-CEEeeecc
Confidence            99999975 89999999999998 77766555

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-43  Score=289.35  Aligned_cols=189  Identities=25%  Similarity=0.394  Sum_probs=154.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|++++    |++|+|.++|.++..     ...++.++|++|++.+++. ||+||+.+.......
T Consensus        77 vG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  155 (305)
T PRK14264         77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGD  155 (305)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhccc
Confidence            599999999999999999852    589999999998743     1234679999999988875 999999986432110


Q ss_pred             ---------ccc-cHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy4235          72 ---------RRT-TWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS  137 (197)
Q Consensus        72 ---------~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~  137 (197)
                               ... ......+.+.++++.+++.    +..++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~  235 (305)
T PRK14264        156 INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA  235 (305)
T ss_pred             ccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence                     000 1122345678899999874    45688899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE-EEeCCcEEEEecChhHHHh
Q psy4235         138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS-LLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       138 ~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg~i~~~g~~~~~~~  193 (197)
                      +..+.++|++++++ .++|++||+.. .+..+||+++ +|++ |+++..|+++++..
T Consensus       236 ~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~d~i~~~l~~-G~i~~~g~~~~~~~  289 (305)
T PRK14264        236 TSKIEDLIEELAEE-YTVVVVTHNMQ-QAARISDQTAVFLTG-GELVEYDDTDKIFE  289 (305)
T ss_pred             HHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhcCEEEEEecC-CEEEEeCCHHHHHh
Confidence            99999999999764 89999999974 6789999974 5676 89999999887753

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1e-42  Score=280.75  Aligned_cols=189  Identities=22%  Similarity=0.232  Sum_probs=150.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHHc-cC--C-
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAKL-TM--D-   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~--~-   71 (197)
                      +||||||||||+++|+|+.+ +|++|+|.++|.++...   .. ++.++|++|++.+++.+|+.+++.+.... ..  . 
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (248)
T PRK09580         33 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ  112 (248)
T ss_pred             ECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhccccc
Confidence            59999999999999999952 37999999999887432   12 24589999999988888877776543211 00  0 


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ...........+.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~  192 (248)
T PRK09580        113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR  192 (248)
T ss_pred             ccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            0011112345677889999995 45667775 899999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHH
Q psy4235         150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +++.|||++||+.. .+... ||++++|++ |+++..|+++.+
T Consensus       193 ~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~~~~  233 (248)
T PRK09580        193 DGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFTLV  233 (248)
T ss_pred             hCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCHHHH
Confidence            77899999999974 56666 899999987 888888988754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=5.4e-43  Score=282.45  Aligned_cols=173  Identities=21%  Similarity=0.210  Sum_probs=145.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.         .++|++|++..++.+||.||+.+......  .     ..
T Consensus        31 ~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-----~~   93 (246)
T cd03237          31 LGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFY--T-----HP   93 (246)
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhcc--c-----cH
Confidence            69999999999999999998 79999999884         47999999887778899999876432111  0     11


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t  159 (197)
                      ..+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||++||+.++..+.++|++++++ +.++|++|
T Consensus        94 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs  173 (246)
T cd03237          94 YFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE  173 (246)
T ss_pred             HHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            34567899999998899999999999999999999999999999999999999999999999999999764 89999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEE-EEecChhHH
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKV  191 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~  191 (197)
                      |+.. .+..+||++++|+++..+ ...+++.++
T Consensus       174 Hd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~  205 (246)
T cd03237         174 HDII-MIDYLADRLIVFEGEPSVNGVANPPQSL  205 (246)
T ss_pred             CCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence            9974 788899999999753222 234555543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.7e-43  Score=310.43  Aligned_cols=178  Identities=23%  Similarity=0.305  Sum_probs=152.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCC--C-C-----CCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFL--I-E-----ELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~--~-~-----~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   ..++.++|++|++.+  + +     .+|+.+++.+.    
T Consensus        35 iG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----  109 (490)
T PRK10938         35 VGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----  109 (490)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----
Confidence            69999999999999999998 7999999999876421   233558999998643  1 1     46888876532    


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                             ....+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++
T Consensus       110 -------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  182 (490)
T PRK10938        110 -------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH  182 (490)
T ss_pred             -------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                   0123568899999999988999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++|.|+|++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus       183 ~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~  223 (490)
T PRK10938        183 QSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGEREEIL  223 (490)
T ss_pred             hcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHh
Confidence            77899999999974 78899999999987 8888888887654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.3e-43  Score=272.80  Aligned_cols=153  Identities=52%  Similarity=0.825  Sum_probs=132.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+.+ +|++|+|.++|+++. ...++.++|++|++.+++.+|++||+.+....           
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------  106 (192)
T cd03232          39 MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-----------  106 (192)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-----------
Confidence            59999999999999999863 368999999999875 33456789999999999999999999864210           


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                              +             +|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|++|
T Consensus       107 --------~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivt  165 (192)
T cd03232         107 --------R-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI  165 (192)
T ss_pred             --------h-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence                    0             8999999999999999999999999999999999999999999999987789999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      |++...+...||++++|+++|++++.|
T Consensus       166 H~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         166 HQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             cCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            997423678999999997647777654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-43  Score=306.52  Aligned_cols=178  Identities=29%  Similarity=0.414  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+.+ |++|+|.+||.+..+   ..++++++||+|+|.+|+. |++||+.++...         
T Consensus       353 vG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~---------  421 (559)
T COG4988         353 VGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD---------  421 (559)
T ss_pred             ECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------
Confidence            69999999999999999998 799999999988754   4688999999999999998 999999986321         


Q ss_pred             HHHHHHHHHHHHcCCccccc----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQ----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      ..++.+.++++..++.+..+          .....|||||+|||++||||+.+++++|+||||++||.++.+.|.+.|.+
T Consensus       422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~  501 (559)
T COG4988         422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE  501 (559)
T ss_pred             CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence            12355667777766654433          33456999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++++ +|+|++||++.  ...-+|+|++|++ |++++.|.++++.+
T Consensus       502 l~~~-ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~~~L~~  543 (559)
T COG4988         502 LAKQ-KTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTHEELSE  543 (559)
T ss_pred             HHhC-CeEEEEEcChH--HHhcCCEEEEecC-CceeccCCHHHHhh
Confidence            9764 89999999973  5788999999987 99999999998864

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=6.5e-43  Score=282.81  Aligned_cols=170  Identities=33%  Similarity=0.425  Sum_probs=145.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCC--CHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL--TVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.        ..++|++|++.+++.+  |+.+++.+..      ..    
T Consensus        36 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----   96 (251)
T PRK09544         36 LGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----   96 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCc--------cCEEEeccccccccccChhHHHHHhccc------cc----
Confidence            59999999999999999998 79999999862        3589999998877653  6777764311      11    


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii  157 (197)
                      ..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +.|+|+
T Consensus        97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii  176 (251)
T PRK09544         97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM  176 (251)
T ss_pred             cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            1245778999999999899999999999999999999999999999999999999999999999999999765 889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +||+.. .+...||++++|++  +++..|+++++.
T Consensus       177 vsH~~~-~i~~~~d~i~~l~~--~i~~~g~~~~~~  208 (251)
T PRK09544        177 VSHDLH-LVMAKTDEVLCLNH--HICCSGTPEVVS  208 (251)
T ss_pred             EecCHH-HHHHhCCEEEEECC--ceEeeCCHHHHh
Confidence            999974 78899999999953  577888887764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-43  Score=320.19  Aligned_cols=175  Identities=27%  Similarity=0.362  Sum_probs=147.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|.+||.++..   ..+++.+|||+|++.+|+. |++||+.++.. .     +  
T Consensus       485 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-~-----~--  554 (686)
T TIGR03797       485 VGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-L-----T--  554 (686)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-C-----C--
Confidence            59999999999999999998 799999999999864   3567889999999999987 99999997532 1     1  


Q ss_pred             HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.++++..++.+           .......+||||||||++|||||+++|++||||||||+||+.+.+++.+.|+
T Consensus       555 --~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~  632 (686)
T TIGR03797       555 --LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE  632 (686)
T ss_pred             --HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence              234455555555543           3334457899999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++   ++|+|++||++.  ..+.||+|++|++ |++++.|+.+++++
T Consensus       633 ~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       633 RL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTYDELMA  673 (686)
T ss_pred             Hh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            86   479999999974  4577999999987 99999999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=8e-43  Score=272.86  Aligned_cols=164  Identities=30%  Similarity=0.362  Sum_probs=141.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...  ..++.++|++|++.+++.+|+.||+.+......   .    
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~----  103 (198)
T TIGR01189        32 TGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---G----  103 (198)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC---C----
Confidence            59999999999999999988 7999999999987432  234568999999888888999999987653321   0    


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus       104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~  183 (198)
T TIGR01189       104 AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLT  183 (198)
T ss_pred             cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            12457889999999988899999999999999999999999999999999999999999999999999987778999999


Q ss_pred             ecCCcchHHhhcCeEEE
Q psy4235         159 IHQPTSGVFEKFDTVSL  175 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~  175 (197)
                      ||+..   .-.|++++.
T Consensus       184 sH~~~---~~~~~~~~~  197 (198)
T TIGR01189       184 THQDL---GLVEARELR  197 (198)
T ss_pred             Ecccc---cccceEEee
Confidence            99874   345677654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2.6e-43  Score=314.97  Aligned_cols=179  Identities=26%  Similarity=0.392  Sum_probs=148.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+++ |++|+|.+||.++..   ..+++.++|+||++.+|+. |++||+.++...    ...  
T Consensus       375 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~----~~~--  446 (582)
T PRK11176        375 VGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTE----QYS--  446 (582)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCC----CCC--
Confidence            59999999999999999998 799999999999854   3456789999999999987 999999875311    011  


Q ss_pred             HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.++++.++           ++........+||||||||++|||||+++|++||||||||+||+.+...+.+.|+
T Consensus       447 --~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~  524 (582)
T PRK11176        447 --REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             --HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              123444444444           3333444457799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +++|+|++||++.  ..+.||+|++|++ |++++.|+.+++++
T Consensus       525 ~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g~~~~l~~  567 (582)
T PRK11176        525 ELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERGTHAELLA  567 (582)
T ss_pred             HHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            875 4689999999973  5678999999987 89999999998875

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.3e-43  Score=282.45  Aligned_cols=175  Identities=27%  Similarity=0.383  Sum_probs=142.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.+++ .|+.||+.+.............
T Consensus        46 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~  123 (226)
T cd03248          46 VGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEA  123 (226)
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHH
Confidence            59999999999999999988 7999999999887432   23456899999998876 5999999875321110000011


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.++++.+  |+....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|+
T Consensus       124 ~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti  202 (226)
T cd03248         124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV  202 (226)
T ss_pred             HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence            1112356788888  788888999999999999999999999999999999999999999999999999999865 6899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      |++||++. .+. .||++++|++ |+
T Consensus       203 i~~sh~~~-~~~-~~d~i~~l~~-g~  225 (226)
T cd03248         203 LVIAHRLS-TVE-RADQILVLDG-GR  225 (226)
T ss_pred             EEEECCHH-HHH-hCCEEEEecC-Cc
Confidence            99999975 564 5999999987 54

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4e-43  Score=314.34  Aligned_cols=177  Identities=27%  Similarity=0.381  Sum_probs=149.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|.+||.++..   ..+++.++|++|++.+|++ |++||+.++.. .     .  
T Consensus       373 vG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-~-----~--  442 (592)
T PRK10790        373 VGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-I-----S--  442 (592)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC-C-----C--
Confidence            59999999999999999998 799999999999854   3567889999999999998 99999998631 1     1  


Q ss_pred             HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++++.++++.+|+.           ........+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+
T Consensus       443 --d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~  520 (592)
T PRK10790        443 --EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA  520 (592)
T ss_pred             --HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence              13345555555543           33334557799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.+ ++|+|++||++.  ....||+|++|++ |++++.|+++++++
T Consensus       521 ~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~-G~i~~~G~~~~L~~  563 (592)
T PRK10790        521 AVRE-HTTLVVIAHRLS--TIVEADTILVLHR-GQAVEQGTHQQLLA  563 (592)
T ss_pred             HHhC-CCEEEEEecchH--HHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9864 689999999974  4677999999987 99999999998864

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=2.5e-43  Score=321.47  Aligned_cols=176  Identities=27%  Similarity=0.409  Sum_probs=146.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.+||.++..   ..+++.++||+|++.+|+. |++||+.++...     .+  
T Consensus       511 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~-----~~--  581 (710)
T TIGR03796       511 VGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPT-----IP--  581 (710)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCC-----CC--
Confidence            69999999999999999998 799999999999853   3567889999999999987 999999875211     11  


Q ss_pred             HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.+.++..           |++........+||||||||++|||||+++|++||||||||+||+.+.+++.+.|+
T Consensus       582 --~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~  659 (710)
T TIGR03796       582 --DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR  659 (710)
T ss_pred             --HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              12233334333           34444445567899999999999999999999999999999999999999999997


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +   .++|+|++||++.  ....||++++|++ |++++.|+.+++++
T Consensus       660 ~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       660 R---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTHEELWA  700 (710)
T ss_pred             h---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCHHHHHH
Confidence            6   4789999999974  4577999999987 99999999999875

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=4.8e-43  Score=297.19  Aligned_cols=183  Identities=25%  Similarity=0.340  Sum_probs=163.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+||||||||+++|.|+++ |++|+|+++|+++.-.    ..+..||+|+|++.+++++||.||+.++...........
T Consensus        36 LGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~  114 (501)
T COG3845          36 LGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR  114 (501)
T ss_pred             eccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCH
Confidence            59999999999999999999 7999999999998532    234569999999999999999999998764322223345


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      +...+++.++.+.+||.-..+.++.+||-||||||.|.+||..+|++|||||||+-|-|...+++++.++.++++|++||
T Consensus       115 ~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi  194 (501)
T COG3845         115 RQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII  194 (501)
T ss_pred             HHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            66778899999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      ++||... ++.++|||+-+|.+ |+++...
T Consensus       195 ~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~  222 (501)
T COG3845         195 FITHKLK-EVMAIADRVTVLRR-GKVVGTV  222 (501)
T ss_pred             EEeccHH-HHHHhhCeeEEEeC-CeEEeee
Confidence            9999985 79999999999998 7776443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-42  Score=273.86  Aligned_cols=166  Identities=30%  Similarity=0.415  Sum_probs=143.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|.++.....++.++|++|++.+++.+|+.||+.+......   .    ..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~  105 (207)
T PRK13539         34 TGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EE  105 (207)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cH
Confidence            69999999999999999988 7999999999886422245668999999888888999999987654321   1    12


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++++||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH  185 (207)
T PRK13539        106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH  185 (207)
T ss_pred             HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            35788999999988888999999999999999999999999999999999999999999999999998877899999999


Q ss_pred             CCcchHHhhcCeEEEEe
Q psy4235         161 QPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~  177 (197)
                      +.. .+..  |+++-+.
T Consensus       186 ~~~-~~~~--~~~~~~~  199 (207)
T PRK13539        186 IPL-GLPG--ARELDLG  199 (207)
T ss_pred             Cch-hhcc--CcEEeec
Confidence            974 4544  8887774

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-42  Score=281.06  Aligned_cols=186  Identities=24%  Similarity=0.343  Sum_probs=154.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +|+||||||||+++|+|+.+| |   ++|+|.++|.++..       ..+++.++|++|++.+++. |+.||+.+.....
T Consensus        48 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~  126 (265)
T PRK14252         48 IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR  126 (265)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc
Confidence            599999999999999999863 2   79999999987631       1235678999999998886 9999998764322


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                      ..  ......++.+.++++.+++.    +..++.+.+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|
T Consensus       127 ~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  204 (265)
T PRK14252        127 GV--KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI  204 (265)
T ss_pred             CC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            11  11122345677788888763    4567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         146 KQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       146 ~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++++. +.|+|++||+.. .+.++||++++|++ |+++..|+.+++.
T Consensus       205 ~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~  248 (265)
T PRK14252        205 SDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGATDTIF  248 (265)
T ss_pred             HHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence            99975 689999999974 78889999999987 8888889988775

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=3.8e-43  Score=313.14  Aligned_cols=188  Identities=29%  Similarity=0.415  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||++.|++++. |++|+|.+||.++..   ..+++.++||+|++.+|.. |++||+.++......+.....
T Consensus       361 VG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a  438 (567)
T COG1132         361 VGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEA  438 (567)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHH
Confidence            69999999999999999998 799999999999864   3567889999999999995 999999987432111111111


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++.+  |++.........||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+
T Consensus       439 ~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~  517 (567)
T COG1132         439 LKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTT  517 (567)
T ss_pred             HHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEE
Confidence            1111234455555  56666666777999999999999999999999999999999999999999999999887 56899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+++|++. .+ ..||+|++|++ |++++.|+++|++..
T Consensus       518 iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h~eLl~~  553 (567)
T COG1132         518 LIIAHRLS-TI-KNADRIIVLDN-GRIVERGTHEELLAK  553 (567)
T ss_pred             EEEeccHh-HH-HhCCEEEEEEC-CEEEEecCHHHHHHc
Confidence            99999984 44 44999999998 899999999998763

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=7.8e-43  Score=309.77  Aligned_cols=188  Identities=26%  Similarity=0.398  Sum_probs=153.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+|+. |++||+.++............
T Consensus       350 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~  427 (544)
T TIGR01842       350 IGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEA  427 (544)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHH
Confidence            69999999999999999998 799999999998754   2456789999999999987 999999854311100000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....++++++.+  |++........+||||||||++||||++++|++|||||||++||+.+++.+.+.|+++..+++|+
T Consensus       428 ~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tv  507 (544)
T TIGR01842       428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITV  507 (544)
T ss_pred             HHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEE
Confidence            1112234566666  56666777789999999999999999999999999999999999999999999999987668999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+..  ..+.||++++|++ |++++.|+++++.+
T Consensus       508 i~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~~~l~~  542 (544)
T TIGR01842       508 VVITHRPS--LLGCVDKILVLQD-GRIARFGERDEVLA  542 (544)
T ss_pred             EEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCHHHHhh
Confidence            99999974  4678999999987 89999999988765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=8.4e-43  Score=285.27  Aligned_cols=176  Identities=23%  Similarity=0.372  Sum_probs=151.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++  ++|+|+++|.++..   ..+++.++|+||++.+|+. |+++|+..+..      ..  
T Consensus        36 vG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~--  104 (275)
T cd03289          36 LGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WS--  104 (275)
T ss_pred             ECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CC--
Confidence            69999999999999999985  58999999999753   2345679999999999986 99999964311      11  


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISG-----------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.++++.++|.+..++.+..           ||+|||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus       105 --~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~  182 (275)
T cd03289         105 --DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK  182 (275)
T ss_pred             --HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              23567788899998888887776           99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. .++|||++||+.. .+. .||++++|++ |++++.|++++++.
T Consensus       183 ~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~~l~~  225 (275)
T cd03289         183 QAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQKLLN  225 (275)
T ss_pred             Hhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHHHHhh
Confidence            875 4799999999974 554 5999999987 89999999998865

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=9.6e-43  Score=267.15  Aligned_cols=139  Identities=39%  Similarity=0.571  Sum_probs=126.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++..  ..+++.++|++|++.+++.+|+.||+.               
T Consensus        32 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------------   95 (173)
T cd03230          32 LGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK---------------   95 (173)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---------------
Confidence            59999999999999999988 799999999998753  234567999999999999999999863               


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                                              ||+||+||++|||||+.+|+++||||||++||+.++..+.+.|++++++|.++|++
T Consensus        96 ------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~  151 (173)
T cd03230          96 ------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS  151 (173)
T ss_pred             ------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence                                    99999999999999999999999999999999999999999999998778899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcE
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      ||+.. .+...||++++|++ |+
T Consensus       152 th~~~-~~~~~~d~i~~l~~-g~  172 (173)
T cd03230         152 SHILE-EAERLCDRVAILNN-GR  172 (173)
T ss_pred             CCCHH-HHHHhCCEEEEEeC-CC
Confidence            99974 67889999999987 54

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.1e-42  Score=268.95  Aligned_cols=143  Identities=28%  Similarity=0.438  Sum_probs=127.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...    ..++.++|++|++   .+++.+|+.||+.+...      
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------  104 (182)
T cd03215          32 AGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------  104 (182)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------
Confidence            59999999999999999998 7999999999987542    2345799999985   57888999999876420      


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                                                   ||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.
T Consensus       105 -----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~  155 (182)
T cd03215         105 -----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK  155 (182)
T ss_pred             -----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence                                         999999999999999999999999999999999999999999999977789


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      |+|++||+.. .+..+||++++|++ |+
T Consensus       156 tiii~sh~~~-~~~~~~d~v~~l~~-G~  181 (182)
T cd03215         156 AVLLISSELD-ELLGLCDRILVMYE-GR  181 (182)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence            9999999974 78899999999987 64

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-42  Score=288.63  Aligned_cols=189  Identities=26%  Similarity=0.372  Sum_probs=168.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +|+||||||||=.+|.++++  ++|+|+|+|+++..      .++++.+-.|||+|  .+.|.|||.+-+..+...+.. 
T Consensus       319 VGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-  395 (534)
T COG4172         319 VGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-  395 (534)
T ss_pred             EecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-
Confidence            69999999999999999886  46999999999964      24567789999997  488999999999998877643 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ..+..+..+++.+.|+.+||+ ...+++|.++|||||||++||||++.+|++++||||||+||...+.+++++|+++.++
T Consensus       396 ~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k  475 (534)
T COG4172         396 KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK  475 (534)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence            345567778999999999998 4579999999999999999999999999999999999999999999999999999865


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                       +.+-+++|||.. .+..+||+|+||++ |+|++.|+.++++..
T Consensus       476 ~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~~~if~~  517 (534)
T COG4172         476 HGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPTEAVFAN  517 (534)
T ss_pred             hCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCHHHHhcC
Confidence             889999999974 89999999999998 999999999998753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.1e-42  Score=276.24  Aligned_cols=171  Identities=25%  Similarity=0.355  Sum_probs=140.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|.++..   ..+++.++|++|++.+++ .|+.||+.+...      ..  
T Consensus        36 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~--  105 (221)
T cd03244          36 VGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS--  105 (221)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC--
Confidence            59999999999999999988 799999999998743   234567999999998776 599999875321      11  


Q ss_pred             HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.+.++.+++.+.           .++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|+
T Consensus       106 --~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  183 (221)
T cd03244         106 --DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR  183 (221)
T ss_pred             --HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence              1234445555555433           356889999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      +++. +.++|++||+.. .+. .||++++|++ |++++.|+
T Consensus       184 ~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~-g~~~~~~~  220 (221)
T cd03244         184 EAFK-DCTVLTIAHRLD-TII-DSDRILVLDK-GRVVEFDS  220 (221)
T ss_pred             HhcC-CCEEEEEeCCHH-HHh-hCCEEEEEEC-CeEEecCC
Confidence            9864 689999999975 554 5999999987 88877664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-42  Score=297.79  Aligned_cols=179  Identities=19%  Similarity=0.268  Sum_probs=152.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.+.          ++.+.+.+++.+|++||+.+......   .......
T Consensus        56 iGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~  121 (549)
T PRK13545         56 IGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMG---LTKEKIK  121 (549)
T ss_pred             EcCCCCCHHHHHHHHhCCCC-CCceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcC---CCHHHHH
Confidence            59999999999999999998 7999999999752          12233456777899999987543221   1223344


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|++||
T Consensus       122 e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSH  201 (549)
T PRK13545        122 EIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH  201 (549)
T ss_pred             HHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            56788999999998899999999999999999999999999999999999999999999999999999877899999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      ++. .+..+||++++|++ |+++..|+++++...|
T Consensus       202 dl~-~i~~l~DrIivL~~-GkIv~~G~~~el~~~~  234 (549)
T PRK13545        202 SLS-QVKSFCTKALWLHY-GQVKEYGDIKEVVDHY  234 (549)
T ss_pred             CHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhH
Confidence            974 78899999999987 8998999998876654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=8.3e-43  Score=317.31  Aligned_cols=180  Identities=29%  Similarity=0.464  Sum_probs=150.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|.+||.++..   ..+++.++||+|++.+|+. |++||+.++...     .+  
T Consensus       497 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~~-----~~--  567 (694)
T TIGR03375       497 IGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAPY-----AD--  567 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCCC-----CC--
Confidence            69999999999999999998 799999999999854   3567889999999999987 999999875321     11  


Q ss_pred             HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.+.++..+           ++.........||||||||++|||||+.+|+++|||||||+||+.+.+.+.+.|+
T Consensus       568 --~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~  645 (694)
T TIGR03375       568 --DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK  645 (694)
T ss_pred             --HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence              123333444333           3444445567899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      ++.+ ++|+|++||++.  ..+.||+|++|++ |++++.|+.+++++..
T Consensus       646 ~~~~-~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~~eLl~~~  690 (694)
T TIGR03375       646 RWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPKDQVLEAL  690 (694)
T ss_pred             HHhC-CCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCHHHHHHHh
Confidence            9864 789999999974  4688999999987 9999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.9e-42  Score=330.81  Aligned_cols=195  Identities=29%  Similarity=0.385  Sum_probs=164.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcC---CCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc---
Q psy4235           1 MSPSGAGKTTLLAALNKRVK---GLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR---   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~---~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---   72 (197)
                      +||||||||||||+|+|+..   .+++|+|.+||.++...  ..++.++|++|++.+++.+||+||+.|.+..+...   
T Consensus        93 lG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~  172 (1394)
T TIGR00956        93 LGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRP  172 (1394)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCC
Confidence            69999999999999999862   25899999999987532  24456999999999999999999999987643211   


Q ss_pred             -cccHHHHH-HHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          73 -RTTWLELN-KTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        73 -~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                       ....++.. ..++.+++.+||.+..+++     +++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus       173 ~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L  252 (1394)
T TIGR00956       173 DGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL  252 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence             11222222 2346789999998887765     4679999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ++++++ |.|+|+++|++...+.+++|++++|.+ |++++.|+++++.++|+
T Consensus       253 ~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~~~yF~  303 (1394)
T TIGR00956       253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKAKQYFE  303 (1394)
T ss_pred             HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHHHHHHH
Confidence            999875 899999999986678999999999987 89999999999988774

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-42  Score=270.81  Aligned_cols=163  Identities=23%  Similarity=0.301  Sum_probs=140.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|+++..  ...++.++|++|++.+++.+||.||+.+.....   .     
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~-----  103 (200)
T PRK13540         33 KGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS---P-----  103 (200)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC---c-----
Confidence            59999999999999999998 799999999998753  234567999999999989999999998764221   0     


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ....+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||++||+.++..+.+.|+++++++.++|++
T Consensus       104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~  183 (200)
T PRK13540        104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLT  183 (200)
T ss_pred             chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            12467889999999888889999999999999999999999999999999999999999999999999987778999999


Q ss_pred             ecCCcchHHhhcCeEE
Q psy4235         159 IHQPTSGVFEKFDTVS  174 (197)
Q Consensus       159 th~~~~~~~~~~d~v~  174 (197)
                      ||+.. . ...||.-+
T Consensus       184 sh~~~-~-~~~~d~~~  197 (200)
T PRK13540        184 SHQDL-P-LNKADYEE  197 (200)
T ss_pred             eCCch-h-ccccchhh
Confidence            99964 3 46677654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.1e-42  Score=317.08  Aligned_cols=178  Identities=31%  Similarity=0.480  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|++||.++..   ..+++.++||+|++.+|+. |++||+.++....    .+  
T Consensus       506 vG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~----~~--  577 (708)
T TIGR01193       506 VGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN----VS--  577 (708)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC----CC--
Confidence            69999999999999999998 799999999999753   3567889999999999987 9999999863111    11  


Q ss_pred             HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.++++..           |++........+||||||||++||||++++|++||||||||+||+.+.+.+.+.|+
T Consensus       578 --~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~  655 (708)
T TIGR01193       578 --QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL  655 (708)
T ss_pred             --HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence              12233333333           33444455667899999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++  +++|+|++||++.  ....||++++|++ |++++.|+.+++++
T Consensus       656 ~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~~~L~~  697 (708)
T TIGR01193       656 NL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSHDELLD  697 (708)
T ss_pred             Hh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            85  4789999999974  4678999999987 99999999999875

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2e-42  Score=309.70  Aligned_cols=182  Identities=26%  Similarity=0.390  Sum_probs=147.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|.+||.++..   ..+++.++|++|++.+|+. |++||+.++...     ...+
T Consensus       367 vG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~-----~~d~  439 (588)
T PRK13657        367 VGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD-----ATDE  439 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCC-----CCHH
Confidence            59999999999999999998 799999999999864   3456789999999999987 999999875211     1111


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+     .+.++++.+  |++.........||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|+++. 
T Consensus       440 ~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-  518 (588)
T PRK13657        440 EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-  518 (588)
T ss_pred             HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence            1111     122333333  33444444566799999999999999999999999999999999999999999999875 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++|+|++||++.  ..+.||++++|++ |+++..|+.+++++
T Consensus       519 ~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~~~l~~  558 (588)
T PRK13657        519 KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSFDELVA  558 (588)
T ss_pred             cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence            4799999999973  5688999999987 88989999988764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3.6e-42  Score=270.82  Aligned_cols=165  Identities=22%  Similarity=0.315  Sum_probs=136.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   ..++.++|++|++.+++. |++||+.+...      ... 
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~------~~~-  110 (207)
T cd03369          40 VGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDE------YSD-  110 (207)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccCC------CCH-
Confidence            59999999999999999988 7999999999987432   234679999999988875 99999975311      111 


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                         +.+.+.++       .++++.+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|+++. ++.|+|+
T Consensus       111 ---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii  179 (207)
T cd03369         111 ---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILT  179 (207)
T ss_pred             ---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence               12333333       357889999999999999999999999999999999999999999999999985 4889999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV  188 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~  188 (197)
                      +||+.. .+.. ||++++|++ |++...|++
T Consensus       180 ~th~~~-~~~~-~d~v~~l~~-g~i~~~g~~  207 (207)
T cd03369         180 IAHRLR-TIID-YDKILVMDA-GEVKEYDHP  207 (207)
T ss_pred             EeCCHH-HHhh-CCEEEEEEC-CEEEecCCC
Confidence            999975 5554 999999987 888776653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.2e-42  Score=308.53  Aligned_cols=178  Identities=31%  Similarity=0.533  Sum_probs=153.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|++||.++..   ..+++.++||+|++.+|+. |++||+.++...         
T Consensus       372 vG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~---------  440 (574)
T PRK11160        372 LGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN---------  440 (574)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc---------
Confidence            69999999999999999998 799999999999854   3456789999999999987 999999875321         


Q ss_pred             HHHHHHHHHHHHcCCcccccc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQV----------QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      ...+.+.+.++.+++.+..++          ....||||||||++||||++++|++|||||||++||+.+.+.+.+.|++
T Consensus       441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~  520 (574)
T PRK11160        441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE  520 (574)
T ss_pred             cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            123457778888887665443          4567999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +. +++|+|+++|++. . ...||++++|++ |++++.|+.+|+++
T Consensus       521 ~~-~~~tviiitHr~~-~-~~~~d~i~~l~~-G~i~~~g~~~~l~~  562 (574)
T PRK11160        521 HA-QNKTVLMITHRLT-G-LEQFDRICVMDN-GQIIEQGTHQELLA  562 (574)
T ss_pred             Hc-CCCEEEEEecChh-H-HHhCCEEEEEeC-CeEEEeCCHHHHHh
Confidence            85 4789999999974 4 466999999987 99999999998875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2.4e-42  Score=266.12  Aligned_cols=139  Identities=36%  Similarity=0.513  Sum_probs=125.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..     ...++.++|++|++.+++.+|+.||+.+.          
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~----------  100 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------  100 (178)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----------
Confidence            59999999999999999988 799999999998753     23456799999999999889999987542          


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                                                 ||+|||||++|||||+.+|+++||||||+|||+.++..+.++|++++++ +.|
T Consensus       101 ---------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~t  153 (178)
T cd03229         101 ---------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT  153 (178)
T ss_pred             ---------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence                                       9999999999999999999999999999999999999999999999877 789


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeC
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|++||+.. .+..+||++++|++
T Consensus       154 iii~sH~~~-~~~~~~d~i~~l~~  176 (178)
T cd03229         154 VVLVTHDLD-EAARLADRVVVLRD  176 (178)
T ss_pred             EEEEeCCHH-HHHHhcCEEEEEeC
Confidence            999999974 67789999999987

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=3.1e-42  Score=279.73  Aligned_cols=186  Identities=22%  Similarity=0.307  Sum_probs=147.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+++ |++|+|+++|.++...   ..++.++|++|++.+++. |+.+|+...... ........
T Consensus        53 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~-~~~~~~~~  129 (257)
T cd03288          53 CGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKC-TDDRLWEA  129 (257)
T ss_pred             ECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCCC-CHHHHHHH
Confidence            59999999999999999988 7999999999987532   345679999999988875 999998532100 00000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.++++.+  +++...+.++.+||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++. ++.|+
T Consensus       130 l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~ti  208 (257)
T cd03288         130 LEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTV  208 (257)
T ss_pred             HHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEE
Confidence            0011234455555  66666777889999999999999999999999999999999999999999999999875 47899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. .+. .||++++|++ |+++..|+++++..
T Consensus       209 ii~sh~~~-~~~-~~dri~~l~~-G~i~~~g~~~~~~~  243 (257)
T cd03288         209 VTIAHRVS-TIL-DADLVLVLSR-GILVECDTPENLLA  243 (257)
T ss_pred             EEEecChH-HHH-hCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99999985 455 4999999987 89989999887754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.8e-42  Score=315.65  Aligned_cols=177  Identities=27%  Similarity=0.428  Sum_probs=145.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.+||+++..   ..+++.++||+|++.+|+. |++||+.++....     +  
T Consensus       513 vG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~~-----~--  583 (711)
T TIGR00958       513 VGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDT-----P--  583 (711)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCCC-----C--
Confidence            69999999999999999998 799999999999854   3466789999999999986 9999998763211     1  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++++.++++..++           +........+||||||||++||||++++|++||||||||+||+.+.+.+.+ ..
T Consensus       584 --~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~  660 (711)
T TIGR00958       584 --DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR  660 (711)
T ss_pred             --HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh
Confidence              1334444444444           333444556899999999999999999999999999999999999999988 22


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                        ...++|+|++||++.  ....||+|++|++ |++++.|+++++++.
T Consensus       661 --~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~~eL~~~  703 (711)
T TIGR00958       661 --SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTHKQLMED  703 (711)
T ss_pred             --ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCHHHHHhC
Confidence              235789999999974  4677999999987 999999999998753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.1e-43  Score=262.96  Aligned_cols=173  Identities=26%  Similarity=0.382  Sum_probs=154.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+++.+++ |++|+++|.|++++.   ..+++.++|+.|.|.+|++ ||.+|+.|....+...     
T Consensus        35 tGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr-----  107 (223)
T COG4619          35 TGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR-----  107 (223)
T ss_pred             eCCCCccHHHHHHHHHhccC-CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-----
Confidence            59999999999999999998 799999999999864   4577889999999999998 9999999987655322     


Q ss_pred             HHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Q psy4235          78 ELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~i  155 (197)
                      .....+.++++++++.+ .+++++.+|||||+||++|+|-|...|+||+||||||+||+.+.+.|.++|.++. .+...+
T Consensus       108 ~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv  187 (223)
T COG4619         108 PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV  187 (223)
T ss_pred             CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEE
Confidence            13467788999999975 5899999999999999999999999999999999999999999999999999987 568899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      +.+||+.. +..+.+|+++-+.. |.+
T Consensus       188 ~WiTHd~d-qa~rha~k~itl~~-G~~  212 (223)
T COG4619         188 LWITHDKD-QAIRHADKVITLQP-GHA  212 (223)
T ss_pred             EEEecChH-HHhhhhheEEEecc-Ccc
Confidence            99999985 77899999999987 654

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=5.9e-42  Score=328.63  Aligned_cols=194  Identities=31%  Similarity=0.505  Sum_probs=165.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-----
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR-----   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-----   72 (197)
                      +||||||||||||+|+|+++ ++   +|+|.+||.++.....++.++|++|++.+++.+||+||+.|++......     
T Consensus       197 lGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~  275 (1470)
T PLN03140        197 LGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDL  275 (1470)
T ss_pred             EcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccc
Confidence            69999999999999999987 56   9999999999865444567999999999999999999999987543110     


Q ss_pred             --cccHHH------------------------HHHHHHHHHHHcCCcccc-----cccCCCCCHHHHHHHHHHHHHhhCC
Q psy4235          73 --RTTWLE------------------------LNKTITRVMENLGINHRR-----QVQISGLSGGQRKRLALAVQLLTEP  121 (197)
Q Consensus        73 --~~~~~~------------------------~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~ia~al~~~p  121 (197)
                        .....+                        ....++.+++.+||++..     ++.++.|||||||||+||++|+.+|
T Consensus       276 ~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p  355 (1470)
T PLN03140        276 LSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPT  355 (1470)
T ss_pred             hhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCC
Confidence              000000                        012357799999998765     4567899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         122 QILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       122 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ++++|||||+|||+.++.++.+.|+++++ .|.|+|+++|++..++..+||++++|.+ |++++.|+++++.++|+
T Consensus       356 ~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~~~~~~yF~  430 (1470)
T PLN03140        356 KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPRDHILEFFE  430 (1470)
T ss_pred             cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999976 4889999999986678999999999987 99999999999988775

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-42  Score=299.82  Aligned_cols=186  Identities=20%  Similarity=0.271  Sum_probs=152.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCC---CCCCCCCHHHHHHHHH--HccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQD---FLIEELTVLEHLQFMA--KLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~---~~~~~ltv~e~l~~~~--~~~~~   71 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|.++....    .++.++|++|++   .+|+.+|+.+|..+..  .....
T Consensus       280 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (491)
T PRK10982        280 AGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK  358 (491)
T ss_pred             ecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccc
Confidence            69999999999999999998 79999999999875321    234589999985   4788888887743211  00000


Q ss_pred             cc-ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 RR-TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 ~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .. ......++.+.++++.+++. +..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+++.|++++
T Consensus       359 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~  438 (491)
T PRK10982        359 VGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA  438 (491)
T ss_pred             ccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH
Confidence            00 11123346678899999995 56799999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChh
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVS  189 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~  189 (197)
                      +++.|||++|||.. ++..+||++++|++ |+++..++.+
T Consensus       439 ~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~  476 (491)
T PRK10982        439 KKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK  476 (491)
T ss_pred             HCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence            88999999999974 78899999999987 8887666553

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=4.2e-42  Score=306.47  Aligned_cols=179  Identities=27%  Similarity=0.396  Sum_probs=148.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+++ |++|+|+++|.++..   ..+++.++|++|++.+|+. |++||+.++...    ...  
T Consensus       364 vG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~----~~~--  435 (571)
T TIGR02203       364 VGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE----QAD--  435 (571)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC----CCC--
Confidence            59999999999999999998 799999999998753   3456789999999999987 999999875310    111  


Q ss_pred             HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++++.++++.+++.           .........||||||||++||||++.+|+++|||||||+||+.+.+.+.+.|+
T Consensus       436 --~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~  513 (571)
T TIGR02203       436 --RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE  513 (571)
T ss_pred             --HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence              23445555555543           33333456799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. .++|+|++||++  ...+.||++++|++ |+++..|+.+++++
T Consensus       514 ~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~~~l~~  556 (571)
T TIGR02203       514 RLM-QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTHNELLA  556 (571)
T ss_pred             HHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCHHHHHH
Confidence            885 468999999997  35788999999987 89999999988763

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=5.2e-42  Score=312.05  Aligned_cols=182  Identities=26%  Similarity=0.437  Sum_probs=150.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|++||.++..   ..+++.++||+|++.+|+. |++||+.++...     ...+
T Consensus       489 vG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~-----~~~~  561 (694)
T TIGR01846       489 VGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPG-----APFE  561 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCC-----CCHH
Confidence            59999999999999999998 799999999999854   3466789999999999986 999999874211     1111


Q ss_pred             HHH-----HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELN-----KTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..     ..+.+.++.+  |++........+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. 
T Consensus       562 ~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-  640 (694)
T TIGR01846       562 HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-  640 (694)
T ss_pred             HHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-
Confidence            111     1223444444  45555566678999999999999999999999999999999999999999999999985 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .++|+|++||++. . ...||++++|++ |++++.|+.+++++
T Consensus       641 ~~~t~i~itH~~~-~-~~~~d~ii~l~~-G~i~~~g~~~~l~~  680 (694)
T TIGR01846       641 RGRTVIIIAHRLS-T-VRACDRIIVLEK-GQIAESGRHEELLA  680 (694)
T ss_pred             CCCEEEEEeCChH-H-HHhCCEEEEEeC-CEEEEeCCHHHHHH
Confidence            5789999999974 3 466999999987 99999999998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=1.7e-41  Score=265.92  Aligned_cols=156  Identities=28%  Similarity=0.339  Sum_probs=132.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc--CCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~--~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +|+||||||||+++|+|+.  + |++|+|.++|+++....   . +..++|++|++.+++.+++.+++            
T Consensus        32 ~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------------   98 (200)
T cd03217          32 MGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL------------   98 (200)
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH------------
Confidence            5999999999999999994  5 79999999999985421   1 33599999999988888887765            


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                                            +....+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|+++++++.|
T Consensus        99 ----------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~t  156 (200)
T cd03217          99 ----------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS  156 (200)
T ss_pred             ----------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence                                  1123579999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCcchHHh-hcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         155 VICAIHQPTSGVFE-KFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       155 iii~th~~~~~~~~-~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +|++||++. .+.. .||++++|++ |++.+.| +.++...
T Consensus       157 iii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~-~~~~~~~  194 (200)
T cd03217         157 VLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSG-DKELALE  194 (200)
T ss_pred             EEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEc-cHHHHhh
Confidence            999999975 6666 7999999987 8888888 4445443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=5.6e-42  Score=262.89  Aligned_cols=136  Identities=32%  Similarity=0.527  Sum_probs=122.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+++. |++||+               
T Consensus        34 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------------   96 (173)
T cd03246          34 IGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI---------------   96 (173)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC---------------
Confidence            59999999999999999998 799999999998753   2345678999999988875 999886               


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                                               |||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|+
T Consensus        97 -------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~  151 (173)
T cd03246          97 -------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV  151 (173)
T ss_pred             -------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence                                     9999999999999999999999999999999999999999999999877899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcE
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      +||+.. .+ ..||++++|++ |+
T Consensus       152 ~sh~~~-~~-~~~d~v~~l~~-G~  172 (173)
T cd03246         152 IAHRPE-TL-ASADRILVLED-GR  172 (173)
T ss_pred             EeCCHH-HH-HhCCEEEEEEC-CC
Confidence            999974 55 68999999987 54

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=7.2e-42  Score=305.00  Aligned_cols=178  Identities=25%  Similarity=0.432  Sum_probs=147.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+|+. |++||+.++...     ... 
T Consensus       347 vG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~-  418 (569)
T PRK10789        347 CGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD-----ATQ-  418 (569)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC-----CCH-
Confidence            59999999999999999998 799999999999753   3456779999999999986 999999875311     111 


Q ss_pred             HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         +.+.+.++..           |++.........||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+
T Consensus       419 ---~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~  495 (569)
T PRK10789        419 ---QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR  495 (569)
T ss_pred             ---HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence               2233333333           33444455677899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +++|+|++||++.  ....||++++|++ |+++..|+.+++++
T Consensus       496 ~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~~~l~~  538 (569)
T PRK10789        496 QWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNHDQLAQ  538 (569)
T ss_pred             HHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCHHHHHH
Confidence            985 5899999999974  4577999999987 89999999988764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-41  Score=265.11  Aligned_cols=161  Identities=21%  Similarity=0.306  Sum_probs=138.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+||||||||+++|+|+.+ |++|+|+++|.++.... .+.++|++|++.+++.+||.||+.+......        ..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~  101 (195)
T PRK13541         32 KGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SA  101 (195)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cH
Confidence            69999999999999999988 79999999999875422 3458999999888888999999987643221        12


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++||+.+++.+.++|++..+++.|+|++||
T Consensus       102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh  181 (195)
T PRK13541        102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH  181 (195)
T ss_pred             HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            45778899999988889999999999999999999999999999999999999999999999999877667899999999


Q ss_pred             CCcchHHhhcCeE
Q psy4235         161 QPTSGVFEKFDTV  173 (197)
Q Consensus       161 ~~~~~~~~~~d~v  173 (197)
                      +.. . ...+|.+
T Consensus       182 ~~~-~-i~~~~~~  192 (195)
T PRK13541        182 LES-S-IKSAQIL  192 (195)
T ss_pred             Ccc-c-cchhhee
Confidence            975 3 4546655

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.2e-41  Score=304.35  Aligned_cols=182  Identities=27%  Similarity=0.377  Sum_probs=149.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+|+. |++||+.++...     ...+
T Consensus       367 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~  439 (585)
T TIGR01192       367 VGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGREG-----ATDE  439 (585)
T ss_pred             ECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCCC-----CCHH
Confidence            59999999999999999998 799999999998753   3456789999999998875 999999875321     1111


Q ss_pred             HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+.     +.+.+..+  |++.........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. 
T Consensus       440 ~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-  518 (585)
T TIGR01192       440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-  518 (585)
T ss_pred             HHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-
Confidence            11111     22333333  45556667788999999999999999999999999999999999999999999999885 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++|+|++||+.. . ...||++++|++ |+++..|+.+++.+
T Consensus       519 ~~~tvI~isH~~~-~-~~~~d~i~~l~~-G~i~~~g~~~~l~~  558 (585)
T TIGR01192       519 KNRTTFIIAHRLS-T-VRNADLVLFLDQ-GRLIEKGSFQELIQ  558 (585)
T ss_pred             CCCEEEEEEcChH-H-HHcCCEEEEEEC-CEEEEECCHHHHHH
Confidence            4789999999974 4 467999999987 89999999988864

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=8.7e-42  Score=304.76  Aligned_cols=179  Identities=26%  Similarity=0.398  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+|+|+|+++ |++|+|.+||.+++.   ..+++.++|+||++.+|+. |++||+.++...     ..  
T Consensus       372 vG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~-----~~--  442 (576)
T TIGR02204       372 VGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPD-----AT--  442 (576)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCC-----CC--
Confidence            59999999999999999998 799999999999854   3456789999999999987 999999875311     11  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.+.++.+++           +.........||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+
T Consensus       443 --~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~  520 (576)
T TIGR02204       443 --DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE  520 (576)
T ss_pred             --HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence              1234444444443           333344567799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++. +++|+|++||++.  ....||+++++++ |++++.|+++++.+.
T Consensus       521 ~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~-g~~~~~g~~~~l~~~  564 (576)
T TIGR02204       521 TLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ-GRIVAQGTHAELIAK  564 (576)
T ss_pred             HHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEeeecHHHHHHc
Confidence            985 4799999999973  4678999999998 889999999887643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=5.7e-42  Score=264.42  Aligned_cols=145  Identities=38%  Similarity=0.558  Sum_probs=126.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   .+++.++|++|                             
T Consensus        31 ~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-----------------------------   80 (180)
T cd03214          31 LGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ-----------------------------   80 (180)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------------------------
Confidence            59999999999999999988 7999999999987431   22334677776                             


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI  156 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii  156 (197)
                              +++.+++.+..++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|++++++ +.|+|
T Consensus        81 --------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii  152 (180)
T cd03214          81 --------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV  152 (180)
T ss_pred             --------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence                    666778877778889999999999999999999999999999999999999999999999999776 78999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ++||+.. .+.+.||++++|++ |++...
T Consensus       153 i~sh~~~-~~~~~~d~~~~l~~-g~i~~~  179 (180)
T cd03214         153 MVLHDLN-LAARYADRVILLKD-GRIVAQ  179 (180)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CEEEec
Confidence            9999974 67799999999987 777654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.3e-41  Score=262.03  Aligned_cols=142  Identities=35%  Similarity=0.599  Sum_probs=125.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|.++..  ..+++.++|++|++.+++ .|++||+                
T Consensus        34 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i----------------   95 (178)
T cd03247          34 LGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL----------------   95 (178)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh----------------
Confidence            59999999999999999988 799999999998743  233566899999988876 5998886                


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                                           +.+||+||+||++||||++.+|++|||||||++||+.+++.+.+.|++++ ++.|+|++
T Consensus        96 ---------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~  153 (178)
T cd03247          96 ---------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWI  153 (178)
T ss_pred             ---------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEE
Confidence                                 67899999999999999999999999999999999999999999999985 57899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ||+.. .+ ..||++++|++ |++++.
T Consensus       154 sh~~~-~~-~~~d~~~~l~~-g~i~~~  177 (178)
T cd03247         154 THHLT-GI-EHMDKILFLEN-GKIIMQ  177 (178)
T ss_pred             ecCHH-HH-HhCCEEEEEEC-CEEEec
Confidence            99975 55 57999999987 887654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0055|consensus

Probab=100.00  E-value=5.3e-42  Score=315.95  Aligned_cols=183  Identities=27%  Similarity=0.426  Sum_probs=149.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|||||||||++++|.+++. |++|+|++||.++..   ..++.++|.|.|+|.+|.. |++||+.|+...     ....
T Consensus       385 VG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d-----at~~  457 (1228)
T KOG0055|consen  385 VGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD-----ATRE  457 (1228)
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc-----ccHH
Confidence            69999999999999999998 799999999999865   3456789999999987775 999999986421     1111


Q ss_pred             HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+.     +.+.+..+  |++.....+..+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|.+.+ 
T Consensus       458 ~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-  536 (1228)
T KOG0055|consen  458 EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-  536 (1228)
T ss_pred             HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-
Confidence            22111     23333333  34444445556799999999999999999999999999999999999999999998875 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      .|+|+|+++|+.. .+.. +|++++|++ |+|++.|+++|++..
T Consensus       537 ~grTTivVaHRLS-tIrn-aD~I~v~~~-G~IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  537 KGRTTIVVAHRLS-TIRN-ADKIAVMEE-GKIVEQGTHDELIAL  577 (1228)
T ss_pred             cCCeEEEEeeehh-hhhc-cCEEEEEEC-CEEEEecCHHHHHhc
Confidence            4889999999975 5544 999999998 999999999998753

>KOG0058|consensus

Probab=100.00  E-value=8.2e-42  Score=300.50  Aligned_cols=188  Identities=29%  Similarity=0.424  Sum_probs=154.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||+||||+.++|..++. |++|+|.+||.|+..   ..++++||+|.|+|.+|.. ||+|||.|+......+.....
T Consensus       500 VGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~A  577 (716)
T KOG0058|consen  500 VGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAA  577 (716)
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHH
Confidence            69999999999999999998 799999999999854   3467889999999999998 999999998652211111111


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.+..+  |.+.....+...||||||||++|||||+++|.||||||.||+||.++...+.+.|.+..+ ++||
T Consensus       578 Ak~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTV  656 (716)
T KOG0058|consen  578 AKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTV  656 (716)
T ss_pred             HHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeE
Confidence            1222344455554  344555667778999999999999999999999999999999999999999999998865 5999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++.|...  -.+.+|+|+++++ |++++.|+.+|+++.
T Consensus       657 lvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h~eLl~~  692 (716)
T KOG0058|consen  657 LVIAHRLS--TVRHADQIVVIDK-GRVVEMGTHDELLSK  692 (716)
T ss_pred             EEEehhhh--HhhhccEEEEEcC-CeEEecccHHHHhhC
Confidence            99999974  4688999999987 999999999998753

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=4.7e-41  Score=266.47  Aligned_cols=164  Identities=23%  Similarity=0.348  Sum_probs=132.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...       ..++.++|++|++.++ ..|+.||+.+....     
T Consensus        33 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~-----  105 (218)
T cd03290          33 VGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF-----  105 (218)
T ss_pred             ECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC-----
Confidence            59999999999999999998 7999999999876421       1235689999999887 46999999874311     


Q ss_pred             ccHHHHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235          74 TTWLELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV  142 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~  142 (197)
                       ..    +...++++.+++.+           ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..++
T Consensus       106 -~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~  180 (218)
T cd03290         106 -NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM  180 (218)
T ss_pred             -CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHH
Confidence             11    12233444444432           245678999999999999999999999999999999999999999999


Q ss_pred             H--HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         143 N--LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       143 ~--~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +  +++.+++++.|+|++||+.. .+ ..||++++|++
T Consensus       181 ~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~  216 (218)
T cd03290         181 QEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD  216 (218)
T ss_pred             HHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence            8  67777666899999999975 45 57999999976

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0057|consensus

Probab=100.00  E-value=1e-41  Score=291.65  Aligned_cols=177  Identities=25%  Similarity=0.461  Sum_probs=150.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+|||||||++|+|.++..  ++|+|++||+++..   ...|+.||||||+..+|.+ ||.+|+.++....     .  
T Consensus       384 vG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa-----s--  453 (591)
T KOG0057|consen  384 VGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA-----S--  453 (591)
T ss_pred             ECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc-----C--
Confidence            69999999999999999876  79999999999854   4578889999999999998 9999999864321     1  


Q ss_pred             HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++-+.+++.++.           .....+...|||||||||+||||++++|+|+++|||||+||..+.+++++.++
T Consensus       454 --~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~  531 (591)
T KOG0057|consen  454 --DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM  531 (591)
T ss_pred             --HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence              23455555555553           33445667899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .. ..++|+|++.|+.  .....||+|+++++ |++...|+.+|++.
T Consensus       532 ~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n-G~v~e~gth~ell~  574 (591)
T KOG0057|consen  532 DV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN-GTVKEYGTHSELLA  574 (591)
T ss_pred             Hh-cCCCeEEEEEecc--hhHhcCCEEEEEEC-CeeEEeccHHHHhh
Confidence            93 4589999999996  46788999999998 99999999999876

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=9.5e-41  Score=264.10  Aligned_cols=174  Identities=20%  Similarity=0.197  Sum_probs=142.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEE-ECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-LNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|. ++|..+          .+.+.+.+++.+|+.||+.+....+..   .... 
T Consensus        19 ~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl~~~~~~~~~---~~~~-   83 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDAL----------PLGANSFILPGLTGEENARMMASLYGL---DGDE-   83 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCcee----------ccccccccCCcCcHHHHHHHHHHHcCC---CHHH-
Confidence            69999999999999999988 7999997 776532          123456788999999999987654321   1111 


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                        ....+.+.+++....++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+ +.++|++|
T Consensus        84 --~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs  160 (213)
T PRK15177         84 --FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT  160 (213)
T ss_pred             --HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence              123344567888888999999999999999999999999999999999999999999999998865433 35799999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++. .+..+||++++|++ |++++.++.++....
T Consensus       161 H~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~  193 (213)
T PRK15177        161 HNPR-LIKEHCHAFGVLLH-GKITMCEDLAQATAL  193 (213)
T ss_pred             CCHH-HHHHhcCeeEEEEC-CeEEEeCCHHHHHHH
Confidence            9974 67889999999987 899999999887544

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=300.33  Aligned_cols=185  Identities=26%  Similarity=0.360  Sum_probs=161.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++....       .++.++|++|++.+++.+|+.||+.+......   
T Consensus        40 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---  115 (648)
T PRK10535         40 VGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---  115 (648)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---
Confidence            59999999999999999998 79999999999985421       13569999999999999999999987543221   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ....+.++.+.++++.+++.+..++++.+||+||+||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.
T Consensus       116 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~  195 (648)
T PRK10535        116 LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH  195 (648)
T ss_pred             CCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            12234456788999999999999999999999999999999999999999999999999999999999999999987789


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++++||+.. .+ ..||++++|++ |++++.|++++..
T Consensus       196 tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~  231 (648)
T PRK10535        196 TVIIVTHDPQ-VA-AQAERVIEIRD-GEIVRNPPAQEKV  231 (648)
T ss_pred             EEEEECCCHH-HH-HhCCEEEEEEC-CEEEeecCccccc
Confidence            9999999974 44 67999999987 9999999888764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.3e-41  Score=295.69  Aligned_cols=172  Identities=20%  Similarity=0.307  Sum_probs=147.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.        +.+||++|++.  +++.+|+.+|+.+...  .  .    .
T Consensus       351 ~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~--~--~----~  413 (530)
T PRK15064        351 IGENGVGKTTLLRTLVGELE-PDSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ--E--G----D  413 (530)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhcc--C--C----c
Confidence            59999999999999999998 79999999873        45899999864  5667899999875321  0  0    1


Q ss_pred             HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ..+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++   +.|+|+
T Consensus       414 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~  490 (530)
T PRK15064        414 DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIF  490 (530)
T ss_pred             cHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEE
Confidence            235678899999994 6789999999999999999999999999999999999999999999999999887   359999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHhh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLKH  194 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~~  194 (197)
                      +|||.. .+..+||++++|++ |+++ +.|+++++++.
T Consensus       491 vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        491 VSHDRE-FVSSLATRIIEITP-DGVVDFSGTYEEYLRS  526 (530)
T ss_pred             EeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCHHHHHHH
Confidence            999974 78899999999998 7765 78999887764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.5e-41  Score=295.64  Aligned_cols=178  Identities=22%  Similarity=0.313  Sum_probs=147.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc-c----------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL-T----------   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~----------   69 (197)
                      +||||||||||||+|+|+++ |++|+|.++|.        ..++|++|++.+++.+||.||+.+.... .          
T Consensus        33 iG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  103 (530)
T PRK15064         33 IGANGCGKSTFMKILGGDLE-PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY  103 (530)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh
Confidence            69999999999999999998 79999999873        3489999999999999999999864210 0          


Q ss_pred             CCcc--c----------------cHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy4235          70 MDRR--T----------------TWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPT  130 (197)
Q Consensus        70 ~~~~--~----------------~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPt  130 (197)
                      ....  .                .....+.++.++++.+|+.+.. ++++.+||||||||++|||||+.+|++|||||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt  183 (530)
T PRK15064        104 ALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPT  183 (530)
T ss_pred             cccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            0000  0                0001235678899999997644 5789999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL  192 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~  192 (197)
                      ++||+.++..+.++|++   .+.|||++||+.. .+..+||++++|++ |++ ++.|++++++
T Consensus       184 ~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~  241 (530)
T PRK15064        184 NNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDY-GELRVYPGNYDEYM  241 (530)
T ss_pred             cccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeC-CEEEEecCCHHHHH
Confidence            99999999999999864   4789999999974 78899999999998 777 5788887664

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=7e-41  Score=262.95  Aligned_cols=158  Identities=24%  Similarity=0.366  Sum_probs=127.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+.+ |++|+|.++|          .++|++|++.+++ .|++||+.+.....      .....
T Consensus        37 ~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~~------~~~~~   98 (204)
T cd03250          37 VGPVGSGKSSLLSALLGELE-KLSGSVSVPG----------SIAYVSQEPWIQN-GTIRENILFGKPFD------EERYE   98 (204)
T ss_pred             ECCCCCCHHHHHHHHhCcCC-CCCCeEEEcC----------EEEEEecCchhcc-CcHHHHhccCCCcC------HHHHH
Confidence            59999999999999999988 7999999998          4899999998885 59999998743211      11111


Q ss_pred             HH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCC
Q psy4235          81 KT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQLACES  152 (197)
Q Consensus        81 ~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~  152 (197)
                      +.     +.+.+..+  ++....++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+ +++++.+++
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~  178 (204)
T cd03250          99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN  178 (204)
T ss_pred             HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC
Confidence            11     12223332  34455667789999999999999999999999999999999999999999998 566666668


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .|+|++||++. .+.. ||++++|++
T Consensus       179 ~tvi~~sh~~~-~~~~-~d~i~~l~~  202 (204)
T cd03250         179 KTRILVTHQLQ-LLPH-ADQIVVLDN  202 (204)
T ss_pred             CEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence            89999999974 5655 999999987

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.7e-40  Score=295.43  Aligned_cols=177  Identities=27%  Similarity=0.318  Sum_probs=146.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc-c----------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL-T----------   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~----------   69 (197)
                      +||||||||||||+|+|+++ |++|+|.+++.        ..+||++|++.+++.+||.||+.+.... .          
T Consensus        39 iG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  109 (556)
T PRK11819         39 LGLNGAGKSTLLRIMAGVDK-EFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIY  109 (556)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence            69999999999999999998 79999998742        3589999999999999999999874310 0          


Q ss_pred             ---CCcccc-------------------HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy4235          70 ---MDRRTT-------------------WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCD  127 (197)
Q Consensus        70 ---~~~~~~-------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllD  127 (197)
                         ......                   .....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD  188 (556)
T PRK11819        110 AAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLD  188 (556)
T ss_pred             HHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence               000000                   0011356788999999964 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235         128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL  192 (197)
Q Consensus       128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~  192 (197)
                      |||++||+.++..+.++|+++.   .|||++||+.. .+..+||++++|++ |+++ +.|+.++..
T Consensus       189 EPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~  249 (556)
T PRK11819        189 EPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYSSWL  249 (556)
T ss_pred             CCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHHHHH
Confidence            9999999999999999999873   59999999974 78899999999998 7764 778877643

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.5e-41  Score=322.72  Aligned_cols=185  Identities=26%  Similarity=0.419  Sum_probs=148.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-----------------------------------------------------CceeEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-----------------------------------------------------LVQGEI   27 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-----------------------------------------------------~~~G~i   27 (197)
                      +||||||||||+++|+|++.|                                                     |++|+|
T Consensus      1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265       1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence            699999999999999999984                                                     169999


Q ss_pred             EECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHH-----HHHHHHHHc--CCccccc
Q psy4235          28 LLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNK-----TITRVMENL--GINHRRQ   97 (197)
Q Consensus        28 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~   97 (197)
                      ++||.++..   ..+++.+|||+|++.+|+. |++|||.++...     ...++..+     .+.+.++.+  |++....
T Consensus      1280 ~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~~-----at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265       1280 LLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKED-----ATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred             EECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCCC-----CCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence            999999854   4567889999999999976 999999986321     11111111     122333333  3344444


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235          98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      .....||||||||++|||||+++|+|||||||||+||+.+.+.|.+.|.++. .+++|+|+++|++.  ..+.||+|++|
T Consensus      1354 e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl 1431 (1466)
T PTZ00265       1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVF 1431 (1466)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEE
Confidence            5567899999999999999999999999999999999999999999999986 35899999999973  46789999999


Q ss_pred             eCC---cE-EEEecChhHHHh
Q psy4235         177 AHG---GL-LAYHGQVSKVLK  193 (197)
Q Consensus       177 ~~g---g~-i~~~g~~~~~~~  193 (197)
                      +++   |+ +++.|+.+|++.
T Consensus      1432 ~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1432 NNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             eCCCCCCCEEEEecCHHHHHh
Confidence            872   55 558999999875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.1e-40  Score=292.71  Aligned_cols=182  Identities=20%  Similarity=0.244  Sum_probs=143.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCC--CCCHHHHHHHHHHc--cCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIE--ELTVLEHLQFMAKL--TMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~~~--~~~~   72 (197)
                      +||||||||||+|+|+|+.+++++|+|+++|+++...    ..++.++|++|++.+++  ..++.+++.+....  ....
T Consensus       292 ~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (490)
T PRK10938        292 VGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQ  371 (490)
T ss_pred             ECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccccccc
Confidence            6999999999999999986522699999999876321    23456899999876543  34676665543211  0000


Q ss_pred             cccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ... ...++.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++
T Consensus       372 ~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~  450 (490)
T PRK10938        372 AVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE  450 (490)
T ss_pred             CCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence            111 223456889999999987 889999999999999999999999999999999999999999999999999999877


Q ss_pred             C-CEEEEEecCCcchHHh-hcCeEEEEeCCcEEEEe
Q psy4235         152 S-RIVICAIHQPTSGVFE-KFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       152 ~-~~iii~th~~~~~~~~-~~d~v~~l~~gg~i~~~  185 (197)
                      + .|||++||+.. ++.. +||++++|++ |+++..
T Consensus       451 ~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~  484 (490)
T PRK10938        451 GETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY  484 (490)
T ss_pred             CCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence            5 46999999975 6666 5999999987 766543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-41  Score=287.39  Aligned_cols=178  Identities=29%  Similarity=0.446  Sum_probs=153.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|.+. |++|+|.++|.++..   ..+++.+++++|...+|.. |+++|+.+....         
T Consensus       370 lG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~---------  438 (573)
T COG4987         370 LGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD---------  438 (573)
T ss_pred             ECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------
Confidence            69999999999999999998 799999999998753   3467789999999999988 999999986422         


Q ss_pred             HHHHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRR-----------QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      ...+.+.++++.+||.+..           +.-...||||||||++|||+|+++.+++||||||.|||+.+.+++++.|.
T Consensus       439 AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~  518 (573)
T COG4987         439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF  518 (573)
T ss_pred             CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH
Confidence            1235566777777775443           33457899999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +-. +|+|+|++||+...  .+.||+|++|++ |+++++|++.+++.
T Consensus       519 ~~~-~~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~~Ll~  561 (573)
T COG4987         519 EHA-EGKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHAELLA  561 (573)
T ss_pred             HHh-cCCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHHhhhc
Confidence            865 48999999999853  688999999987 99999999999875

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.6e-40  Score=295.01  Aligned_cols=165  Identities=22%  Similarity=0.245  Sum_probs=143.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++          ..++|++|+..+++.+||.||+.+.....     .   ..
T Consensus       371 ~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~---~~  431 (590)
T PRK13409        371 VGPNGIGKTTFAKLLAGVLK-PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----G---SS  431 (590)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhhc-----C---hH
Confidence            59999999999999999998 799999985          14899999988888999999998753211     1   11


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t  159 (197)
                      ..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ +.|+|++|
T Consensus       432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivs  511 (590)
T PRK13409        432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD  511 (590)
T ss_pred             HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            34678999999998899999999999999999999999999999999999999999999999999999764 89999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      ||.. ++..+||++++|+  |++...|.
T Consensus       512 HD~~-~~~~~aDrvivl~--~~~~~~g~  536 (590)
T PRK13409        512 HDIY-MIDYISDRLMVFE--GEPGKHGH  536 (590)
T ss_pred             CCHH-HHHHhCCEEEEEc--Ccceeeee
Confidence            9974 7889999999995  35544443

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=1e-39  Score=267.97  Aligned_cols=167  Identities=21%  Similarity=0.309  Sum_probs=134.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|          .++|++|++.+++. ||.||+.+.....      .    
T Consensus        69 iG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~~------~----  126 (282)
T cd03291          69 TGSTGSGKTSLLMLILGELE-PSEGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSYD------E----  126 (282)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECC----------EEEEEeCccccccc-CHHHHhhcccccC------H----
Confidence            59999999999999999998 7999999987          28999999988875 9999998642110      0    


Q ss_pred             HHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH
Q psy4235          81 KTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL-KQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l-~~l  148 (197)
                      ..+.+.++.+++.+           ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.+ +.+
T Consensus       127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~  206 (282)
T cd03291         127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL  206 (282)
T ss_pred             HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence            01122223333321           234456899999999999999999999999999999999999999999865 555


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + ++.+||++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       207 ~-~~~tIiiisH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~~  247 (282)
T cd03291         207 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQS  247 (282)
T ss_pred             h-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            4 4789999999975 44 68999999987 88888999887754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-41  Score=256.47  Aligned_cols=189  Identities=26%  Similarity=0.416  Sum_probs=164.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC-eeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc---
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG-CPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR---   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g-~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---   72 (197)
                      ||||||||||++.+|+|..+ |+.|+++++| .++...+    .+.-||.-||.|..|+.+||+||+.+........   
T Consensus        37 IGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~  115 (249)
T COG4674          37 IGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS  115 (249)
T ss_pred             ECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHH
Confidence            69999999999999999988 7999999999 7775432    2345899999999999999999999875433211   


Q ss_pred             --cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          73 --RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        73 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .....+.+.+++++|...||.+..++..+.||.|||||+.|++.++++|++|+||||++|+--....+..++|+.++.
T Consensus       116 L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~  195 (249)
T COG4674         116 LFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG  195 (249)
T ss_pred             hhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc
Confidence              011224456899999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       .++|+++.||+ .++.+++++|-+|+. |.+..+|+.+++-.
T Consensus       196 -~hsilVVEHDM-~Fvr~~A~~VTVlh~-G~VL~EGsld~v~~  235 (249)
T COG4674         196 -KHSILVVEHDM-GFVREIADKVTVLHE-GSVLAEGSLDEVQN  235 (249)
T ss_pred             -CceEEEEeccH-HHHHHhhheeEEEec-cceeecccHHHhhc
Confidence             57999999996 699999999999998 89999999998753

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=3.4e-40  Score=251.52  Aligned_cols=133  Identities=34%  Similarity=0.410  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.        +.++|++|++.++ .+|+.||+.+.               
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~---------------   87 (166)
T cd03223          33 TGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP---------------   87 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc---------------
Confidence            59999999999999999988 79999999873        5689999998765 56999998642               


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                                        ++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++   +.|+|++||
T Consensus        88 ------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh  146 (166)
T cd03223          88 ------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGH  146 (166)
T ss_pred             ------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeC
Confidence                              35789999999999999999999999999999999999999999999886   579999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcE
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      +.. . ...||++++|+++|.
T Consensus       147 ~~~-~-~~~~d~i~~l~~~~~  165 (166)
T cd03223         147 RPS-L-WKFHDRVLDLDGEGG  165 (166)
T ss_pred             Chh-H-HhhCCEEEEEcCCCC
Confidence            974 4 579999999988663

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=5.2e-40  Score=292.12  Aligned_cols=177  Identities=27%  Similarity=0.298  Sum_probs=144.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC----------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM----------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~----------   70 (197)
                      +|||||||||||++|+|+.+ |++|+|.+++        ...+||++|++.+++.+||.||+.++.....          
T Consensus        37 iG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~  107 (552)
T TIGR03719        37 LGLNGAGKSTLLRIMAGVDK-EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEIS  107 (552)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence            69999999999999999998 7999999875        1458999999999999999999987432100          


Q ss_pred             --CccccHH---------------------HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy4235          71 --DRRTTWL---------------------ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCD  127 (197)
Q Consensus        71 --~~~~~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllD  127 (197)
                        .......                     ....++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD  186 (552)
T TIGR03719       108 AKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLD  186 (552)
T ss_pred             HHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence              0000000                     01235667888888854 68899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235         128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL  192 (197)
Q Consensus       128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~  192 (197)
                      |||++||+.++..+.+.|+++   +.++|++||+.. .+..+||++++|++ |++ .+.|+++++.
T Consensus       187 EPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~~~~  247 (552)
T TIGR03719       187 EPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYSSWL  247 (552)
T ss_pred             CCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHHHHH
Confidence            999999999999999999876   259999999974 78899999999998 765 4778887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.1e-40  Score=283.32  Aligned_cols=190  Identities=26%  Similarity=0.387  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      |||||||||||.|+|.|..+ |.+|.|++||-++..   ..+-+.|||+||+-.+|+. ||.|||.-+............
T Consensus       368 IGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieA  445 (580)
T COG4618         368 IGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEA  445 (580)
T ss_pred             ECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHH
Confidence            79999999999999999988 799999999999854   3456789999999999999 999999865422111111111


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ..-..+.+++-.+  |.+.....-...||||||||+++||||..+|.+++||||-|+||......+.+.|.+.+++|.++
T Consensus       446 A~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~v  525 (580)
T COG4618         446 ARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTV  525 (580)
T ss_pred             HHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEE
Confidence            2223456666655  33444455567899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      |+++|.+.  +...+|++++|++ |++..+|+.+|++...
T Consensus       526 vviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~eVLa~~  562 (580)
T COG4618         526 VVIAHRPS--ALASVDKILVLQD-GRIAAFGPREEVLAKV  562 (580)
T ss_pred             EEEecCHH--HHhhcceeeeecC-ChHHhcCCHHHHHHHh
Confidence            99999984  6899999999987 9999999999998764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=2.2e-40  Score=253.64  Aligned_cols=133  Identities=36%  Similarity=0.572  Sum_probs=119.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|+++..   ..+++.++|++|++.+++ .|+.||+               
T Consensus        34 ~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------   96 (171)
T cd03228          34 VGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------   96 (171)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------
Confidence            59999999999999999998 799999999998753   233456899999988776 4888886               


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                                               ||+|||||++|||||+.+|++|||||||++||+.++..+.++|+++++ +.++|+
T Consensus        97 -------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~  150 (171)
T cd03228          97 -------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIV  150 (171)
T ss_pred             -------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence                                     999999999999999999999999999999999999999999999864 689999


Q ss_pred             EecCCcchHHhhcCeEEEEeC
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +||+.. .+.. ||++++|++
T Consensus       151 ~sh~~~-~~~~-~d~~~~l~~  169 (171)
T cd03228         151 IAHRLS-TIRD-ADRIIVLDD  169 (171)
T ss_pred             EecCHH-HHHh-CCEEEEEcC
Confidence            999975 5666 999999987

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=3.3e-40  Score=267.42  Aligned_cols=167  Identities=24%  Similarity=0.289  Sum_probs=142.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEE-----------ECCeeCCcc--ccc---ceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-----------LNGCPISRT--VMS---RISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-----------~~g~~~~~~--~~~---~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+|+|+|+++ |++|+|+           ++|.++...  ..+   ..++|++|...+++. ++.+++.+
T Consensus        32 vG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~  109 (255)
T cd03236          32 VGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGE  109 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHH
Confidence            69999999999999999998 7999996           788876431  111   237899999888884 88888876


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      ...        .......+.++++.+++.+..++.+.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus       110 ~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~  181 (255)
T cd03236         110 LLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL  181 (255)
T ss_pred             Hhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence            431        112345678999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         145 LKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       145 l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      |+++++++.++|++||+.. .+..+||++++|++
T Consensus       182 l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~~  214 (255)
T cd03236         182 IRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLYG  214 (255)
T ss_pred             HHHHHhcCCEEEEEECCHH-HHHHhCCEEEEECC
Confidence            9999877899999999974 67789999999953

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=8.4e-40  Score=290.79  Aligned_cols=175  Identities=22%  Similarity=0.252  Sum_probs=145.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+.+ |++|+|++++ +       ..+||++|++ .+++.+||.||+.+.......   ..  .
T Consensus       354 ~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~--~  419 (552)
T TIGR03719       354 IGPNGAGKSTLFRMITGQEQ-PDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---GK--R  419 (552)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCeEEEECC-c-------eEEEEEeCCccccCCCCcHHHHHHhhcccccc---Cc--c
Confidence            69999999999999999998 7999999854 2       1489999996 488889999999886432111   11  1


Q ss_pred             HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++.   .++|++
T Consensus       420 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viiv  496 (552)
T TIGR03719       420 EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVI  496 (552)
T ss_pred             hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEE
Confidence            123557899999974 5789999999999999999999999999999999999999999999999999883   389999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~  193 (197)
                      |||. +.+..+||++++|+++|++. +.|+.++..+
T Consensus       497 sHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       497 SHDR-WFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             eCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            9997 47889999999998655654 6677776543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.8e-40  Score=254.90  Aligned_cols=182  Identities=27%  Similarity=0.390  Sum_probs=153.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc---ceEEEEecCC--CCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~---~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      ||.||||||||+|+|+|.+. |++|+|.++|.+++..+..   ..++.|||+|  ..++.||+.||+.++..........
T Consensus        38 iGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~  116 (263)
T COG1101          38 IGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS  116 (263)
T ss_pred             EcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccc
Confidence            69999999999999999998 7999999999999875432   3478899997  5899999999999876543222221


Q ss_pred             H---HHHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          76 W---LELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        76 ~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      .   ....+...+-++.+  |+++.++.+++-|||||||-+++++|.++.|++|+|||-|++|||.....+++.-.++.+
T Consensus       117 ~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~  196 (263)
T COG1101         117 SALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE  196 (263)
T ss_pred             hhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHH
Confidence            1   22334455666665  567899999999999999999999999999999999999999999999999999999876


Q ss_pred             C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      + ..|.+++||++ +.+..+.+|.++|+. |+|+.+
T Consensus       197 ~~klTtlMVTHnm-~~Al~yG~RlImLh~-G~IvlD  230 (263)
T COG1101         197 EHKLTTLMVTHNM-EDALDYGNRLIMLHS-GKIVLD  230 (263)
T ss_pred             hcCCceEEEeccH-HHHHhhCCeEEEEeC-CeEEEE
Confidence            5 67999999997 589999999999987 888764

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-40  Score=263.49  Aligned_cols=153  Identities=27%  Similarity=0.375  Sum_probs=139.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+||||||||-|+|+|+++ |++|+|+|+|+++....                                     .....
T Consensus        45 VGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~~-------------------------------------~~~~~   86 (268)
T COG4608          45 VGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKLS-------------------------------------KEERR   86 (268)
T ss_pred             EecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhcc-------------------------------------hhHHH
Confidence            69999999999999999999 79999999999865322                                     12344


Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      +++.++|+.+|+. +.++++|.+||||||||++|||||+.+|+++++|||+|+||...+.++.++|+++.++ +.+.+++
T Consensus        87 ~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI  166 (268)
T COG4608          87 ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI  166 (268)
T ss_pred             HHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence            6799999999997 4789999999999999999999999999999999999999999999999999999876 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||.. .+..+|||+.+|.. |++++.|+.++++.
T Consensus       167 sHDL~-vv~~isdri~VMy~-G~iVE~g~~~~~~~  199 (268)
T COG4608         167 SHDLS-VVRYISDRIAVMYL-GKIVEIGPTEEVFS  199 (268)
T ss_pred             EEEHH-hhhhhcccEEEEec-CceeEecCHHHHhh
Confidence            99974 89999999999998 99999999998875

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=263.77  Aligned_cols=190  Identities=28%  Similarity=0.377  Sum_probs=163.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|||||||||+||+|+|++. |++|.|.++|.+.-.  ..+-+.+++|+ |...+...+.+.+.+......+.   .+..
T Consensus        56 lGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~---Ipd~  131 (325)
T COG4586          56 LGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE---IPDD  131 (325)
T ss_pred             EcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHh---CCHH
Confidence            69999999999999999999 799999999987532  22334566665 55677777778887776554442   2334


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVI  156 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~ii  156 (197)
                      ...++.+.+.+.++++..++.+++.||-|||.|+.||.||+++|++|+|||||-|||...+..+.+.+++.+. ++.||+
T Consensus       132 ~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl  211 (325)
T COG4586         132 EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL  211 (325)
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence            5667889999999999999999999999999999999999999999999999999999999999999999985 489999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ++||+.. .+...||||+.++. |+++++|+.+++.+.|.
T Consensus       212 lTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~~l~~~f~  249 (325)
T COG4586         212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLAQLQEQFG  249 (325)
T ss_pred             EEecchh-hHHHhhhheEEeeC-CcEeecccHHHHHHHhC
Confidence            9999975 79999999999987 99999999999887763

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.2e-39  Score=289.99  Aligned_cols=175  Identities=21%  Similarity=0.245  Sum_probs=145.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|++++ +       ..+||++|++ .+++.+||.||+.+........   .  .
T Consensus       356 ~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~--~  421 (556)
T PRK11819        356 IGPNGAGKSTLFKMITGQEQ-PDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG---N--R  421 (556)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-c-------eEEEEEeCchhhcCCCCCHHHHHHhhccccccc---c--c
Confidence            69999999999999999998 7999999853 2       1489999996 7888999999998764321110   0  1


Q ss_pred             HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ...+..+++.+++.. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.   .++|++
T Consensus       422 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~v  498 (556)
T PRK11819        422 EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVI  498 (556)
T ss_pred             HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEE
Confidence            123457899999964 5799999999999999999999999999999999999999999999999999873   389999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~  193 (197)
                      ||+.. .+..+||++++|+++|.+. +.|+.++.++
T Consensus       499 tHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        499 SHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             ECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            99974 7889999999998656654 6788876654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=3.5e-40  Score=291.85  Aligned_cols=162  Identities=34%  Similarity=0.514  Sum_probs=134.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..   ..+++.++||+|++.+|+. |++||+.++....     .  
T Consensus       354 vG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~-----~--  424 (529)
T TIGR02857       354 VGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDA-----S--  424 (529)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCCC-----C--
Confidence            69999999999999999998 799999999999854   3467789999999999986 9999998753211     1  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++.+.+.++..++           +........+||||||||++||||++++|+++|||||||+||+.+.+.+.+.++
T Consensus       425 --~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~  502 (529)
T TIGR02857       425 --DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR  502 (529)
T ss_pred             --HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence              1234444444444           333444567899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ++. +++|+|++||++.  ..+.||++++|
T Consensus       503 ~~~-~~~t~i~itH~~~--~~~~~d~i~~l  529 (529)
T TIGR02857       503 ALA-QGRTVLLVTHRLA--LAERADRIVVL  529 (529)
T ss_pred             Hhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence            885 5799999999973  45789999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0065|consensus

Probab=100.00  E-value=1.3e-40  Score=307.10  Aligned_cols=196  Identities=41%  Similarity=0.674  Sum_probs=177.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +|+|||||||||++|+|+.. +..+|+|+++|.+.+...++|.+|||-|++...+.+||+|.|.|.+.++.....+.++.
T Consensus       823 MG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek  902 (1391)
T KOG0065|consen  823 MGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEK  902 (1391)
T ss_pred             hcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHH
Confidence            69999999999999999853 34689999999998867788899999999999999999999999998876655555666


Q ss_pred             HHHHHHHHHHcCCcccccccCCC----CCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          80 NKTITRVMENLGINHRRQVQISG----LSGGQRKRLALAVQLLTEP-QILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~----LSgGq~qrv~ia~al~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      .+.++++++.++|+++.+.-++.    ||..||+|+.||.-|+.+| .||+|||||||||..+...+++++|+++..|+|
T Consensus       903 ~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt  982 (1391)
T KOG0065|consen  903 YEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT  982 (1391)
T ss_pred             HHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence            68899999999999888877766    9999999999999999999 999999999999999999999999999999999


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH----HHhhhh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK----VLKHFA  196 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~----~~~~~~  196 (197)
                      |+++.|+|...+++.+|++++|++||+.++.|+..+    +.++|+
T Consensus       983 IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFe 1028 (1391)
T KOG0065|consen  983 ILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFE 1028 (1391)
T ss_pred             EEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHH
Confidence            999999999999999999999999999999998864    444554

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-39  Score=246.56  Aligned_cols=127  Identities=31%  Similarity=0.420  Sum_probs=114.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...    ..++.++|++|                            
T Consensus        32 ~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------------------------   82 (163)
T cd03216          32 LGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------------------------   82 (163)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------------------------
Confidence            59999999999999999998 7999999999987542    13456889988                            


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                                                ||+||+||++||||++.+|+++||||||++||+.+++.+.+.|+++++++.|+|
T Consensus        83 --------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii  136 (163)
T cd03216          83 --------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI  136 (163)
T ss_pred             --------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence                                      999999999999999999999999999999999999999999999987789999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      ++||+.. .+.+.||++++|++ |++++
T Consensus       137 i~sh~~~-~~~~~~d~~~~l~~-g~i~~  162 (163)
T cd03216         137 FISHRLD-EVFEIADRVTVLRD-GRVVG  162 (163)
T ss_pred             EEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence            9999974 67889999999987 77754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.1e-40  Score=316.58  Aligned_cols=177  Identities=23%  Similarity=0.355  Sum_probs=149.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|.|+++ |++|+|.+||.++..   ..+|++++||||++.+|+. |++|||.++..      ..  
T Consensus      1268 VG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~------~s-- 1337 (1495)
T PLN03232       1268 VGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSE------HN-- 1337 (1495)
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCC------CC--
Confidence            69999999999999999998 799999999999864   3567889999999999998 99999976421      11  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.+.++..++           +........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus      1338 --deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232       1338 --DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred             --HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence              1334445554444           334444567899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.. +++|+|+++|+.. . ...||+|++|++ |++++.|+++++++
T Consensus      1416 ~~~-~~~TvI~IAHRl~-t-i~~~DrIlVL~~-G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1416 EEF-KSCTMLVIAHRLN-T-IIDCDKILVLSS-GQVLEYDSPQELLS 1458 (1495)
T ss_pred             HHc-CCCEEEEEeCCHH-H-HHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            874 4799999999974 3 456999999987 99999999999874

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=6e-40  Score=290.40  Aligned_cols=150  Identities=31%  Similarity=0.456  Sum_probs=124.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.+||.++..  ..+++.++||||++.+|+. |++||+.++...     .    
T Consensus       367 vG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~-----~----  435 (529)
T TIGR02868       367 LGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPD-----A----  435 (529)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCC-----C----
Confidence            69999999999999999998 799999999998764  3456789999999999988 999999986311     1    


Q ss_pred             HHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          79 LNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      .++++.++++..++.+           ........||||||||++|||||+++|++||||||||+||+.+.+.+.+.+++
T Consensus       436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1234555555555533           22334567999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCC
Q psy4235         148 LACESRIVICAIHQP  162 (197)
Q Consensus       148 l~~~~~~iii~th~~  162 (197)
                      +. +++|+|++||++
T Consensus       516 ~~-~~~TvIiItHrl  529 (529)
T TIGR02868       516 AL-SGKTVVVITHHL  529 (529)
T ss_pred             hc-CCCEEEEEecCC
Confidence            64 478999999973

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2e-39  Score=314.35  Aligned_cols=177  Identities=25%  Similarity=0.368  Sum_probs=149.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|.|+++ |++|+|.+||.++..   ..+|++++||||++.+|.. |++|||.++..      ..  
T Consensus      1271 VGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~t-- 1340 (1622)
T PLN03130       1271 VGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HN-- 1340 (1622)
T ss_pred             ECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CC--
Confidence            69999999999999999998 799999999999864   3567889999999999998 99999976421      11  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++.+.++++..++           +........+||||||||++|||||+++|+|||||||||+||+.+.+.|.+.|+
T Consensus      1341 --deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130       1341 --DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred             --HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence              2334445554444           333444556899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.. +++|+|+++|+.. . ...||+|++|++ |++++.|+++++++
T Consensus      1419 ~~~-~~~TvI~IAHRL~-t-I~~~DrIlVLd~-G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1419 EEF-KSCTMLIIAHRLN-T-IIDCDRILVLDA-GRVVEFDTPENLLS 1461 (1622)
T ss_pred             HHC-CCCEEEEEeCChH-H-HHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            875 4799999999975 3 456999999997 99999999999875

>KOG0055|consensus

Probab=100.00  E-value=1.4e-39  Score=300.00  Aligned_cols=182  Identities=27%  Similarity=0.444  Sum_probs=152.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|||||||||.+.+|-.++. |++|.|.+||.++..   ..+|+++|.|.|+|.||.. |++||+.|+...     .+..
T Consensus      1022 VG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~~-----vs~~ 1094 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEE-----VSEE 1094 (1228)
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCCC-----CCHH
Confidence            69999999999999999888 799999999999865   3467889999999999997 999999998211     1222


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+     .+.+.+..+  |++.....+..+||||||||++||||+++||+||||||.||+||.++.+.+.+.|.+.. 
T Consensus      1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~- 1173 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM- 1173 (1228)
T ss_pred             HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-
Confidence            2222     233334433  44555666778999999999999999999999999999999999999999999999975 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|.|++.|.+.  -.+-||.|+|+++ |+|++.|+.++++.
T Consensus      1174 ~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTHDELLA 1213 (1228)
T ss_pred             cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccHHHHHh
Confidence            5899999999974  4688999999987 99999999999876

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-39  Score=255.16  Aligned_cols=183  Identities=25%  Similarity=0.359  Sum_probs=153.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecC--CCCCCCCCHHHHHHHHHH--ccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQ--DFLIEELTVLEHLQFMAK--LTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~--~~~~~   72 (197)
                      +|||||||||||++++|..+ |++|.+.+.|+....    .++++.||||.-.  ..+.+..+|+|-+.-+..  .....
T Consensus        63 ~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~  141 (257)
T COG1119          63 VGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQ  141 (257)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccc
Confidence            59999999999999999988 789999999998743    3567889999754  445566788887754321  11111


Q ss_pred             cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                      ....+...+++..+++.+|+.+.++++..+||-|||||+.|||||+.+|++||||||++|||...++.+.+.|.+++.. 
T Consensus       142 ~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~  221 (257)
T COG1119         142 EDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP  221 (257)
T ss_pred             cCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCC
Confidence            1223456678899999999999999999999999999999999999999999999999999999999999999999865 


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                       +.++++|||+.. ++-..+++++.+.+ |++++.|
T Consensus       222 ~~~~ll~VtHh~e-Ei~~~~th~lll~~-g~v~~~g  255 (257)
T COG1119         222 GAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQG  255 (257)
T ss_pred             CCceEEEEEcchh-hcccccceEEEeeC-Cceeecc
Confidence             789999999974 78889999999987 8888766

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=6.9e-39  Score=284.69  Aligned_cols=167  Identities=25%  Similarity=0.301  Sum_probs=139.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.+||.++..   ..+++.++|++|++.+|+. |+++|   .    .  .    
T Consensus       355 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~----~--~----  419 (547)
T PRK10522        355 IGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G----K--P----  419 (547)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----C--c----
Confidence            69999999999999999998 799999999999864   2456789999999998886 78777   1    0  0    


Q ss_pred             HHHHHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q psy4235          78 ELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-E  151 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~  151 (197)
                      ...+.+.++++.+++....+..     ..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.+..+ .
T Consensus       420 ~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  499 (547)
T PRK10522        420 ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM  499 (547)
T ss_pred             hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            1234677888888887554322     458999999999999999999999999999999999999999999986643 5


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      ++|+|++||++.  ....||++++|++ |++++.
T Consensus       500 ~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e~  530 (547)
T PRK10522        500 GKTIFAISHDDH--YFIHADRLLEMRN-GQLSEL  530 (547)
T ss_pred             CCEEEEEEechH--HHHhCCEEEEEEC-CEEEEe
Confidence            899999999973  5678999999998 666544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.5e-38  Score=286.78  Aligned_cols=174  Identities=26%  Similarity=0.352  Sum_probs=144.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|.+ |.++       .+||++|++ .+++.+||.||+.+......   ..  ..
T Consensus       351 ~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~---~~--~~  416 (635)
T PRK11147        351 IGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEVM---VN--GR  416 (635)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhccccc---cc--ch
Confidence            69999999999999999988 79999998 5432       489999985 58899999999987532110   01  11


Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ...+.++++.+++. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++   +.|||++
T Consensus       417 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~v  493 (635)
T PRK11147        417 PRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLV  493 (635)
T ss_pred             HHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEE
Confidence            34577899999996 5688999999999999999999999999999999999999999999999999886   4599999


Q ss_pred             ecCCcchHHhhcCeEEEEe-CCcEEEEecChhHHH
Q psy4235         159 IHQPTSGVFEKFDTVSLLA-HGGLLAYHGQVSKVL  192 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~-~gg~i~~~g~~~~~~  192 (197)
                      |||. .++..+||++++++ +|....+.|+.++..
T Consensus       494 SHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        494 SHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             ECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence            9997 47889999999997 544445677777653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=6e-39  Score=310.55  Aligned_cols=177  Identities=24%  Similarity=0.327  Sum_probs=148.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|.+++. |++|+|.+||.|+..   ..+|++++||||++.+|++ |+++||..+..      ..  
T Consensus      1318 VGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~------~s-- 1387 (1522)
T TIGR00957      1318 VGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQ------YS-- 1387 (1522)
T ss_pred             ECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccC------CC--
Confidence            69999999999999999998 799999999999864   3567889999999999998 99999973211      11  


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++.+.++++..++           +........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus      1388 --deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957      1388 --DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred             --HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence              1334455555444           333444556799999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.. +++|+|+++|+..  ....||+|++|++ |++++.|+++++++
T Consensus      1466 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1466 TQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             HHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            864 4789999999974  3566999999987 99999999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=9.6e-39  Score=309.04  Aligned_cols=177  Identities=23%  Similarity=0.349  Sum_probs=149.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|++|||||||+++|.|+++ |++|+|++||.++..   ..+++.++||||++.+|+. |+++||..+.      ..   
T Consensus      1342 VGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~--- 1410 (1560)
T PTZ00243       1342 VGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EA--- 1410 (1560)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CC---
Confidence            69999999999999999998 799999999999864   3567889999999999988 9999996421      11   


Q ss_pred             HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTE-PQILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~-p~llllDEPts~LD~~~~~~i~~~l  145 (197)
                       ..+.+.++++..++.+.           ......+||||||||++|||||+++ |+|||||||||+||+.+.+.|.+.|
T Consensus      1411 -sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243       1411 -SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred             -CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence             12456666666666432           2234467999999999999999995 9999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         146 KQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       146 ~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.. +++|+|+++|+..  ....||+|++|++ |++++.|+++++++
T Consensus      1490 ~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1490 MSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSPRELVM 1533 (1560)
T ss_pred             HHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            9864 4789999999974  4577999999987 99999999999874

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.1e-38  Score=283.82  Aligned_cols=167  Identities=24%  Similarity=0.291  Sum_probs=139.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++|++|++.+|.. |+++|..        .    .
T Consensus       374 vG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~--------~----~  439 (555)
T TIGR01194       374 VGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG--------E----H  439 (555)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc--------c----c
Confidence            59999999999999999998 799999999999864   2456779999999998886 7888731        0    1


Q ss_pred             HHHHHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQ------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK-QLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~-~l~~  150 (197)
                      ...+.+.++++.+++.+..+..      ...||||||||++||||++.+|++|||||||++||+.+.+.+.+.+. .++.
T Consensus       440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~  519 (555)
T TIGR01194       440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR  519 (555)
T ss_pred             hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            1235677889999987655443      35799999999999999999999999999999999999999988654 4555


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      .++|+|++||++.  ..+.||++++|++ |++++
T Consensus       520 ~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~~  550 (555)
T TIGR01194       520 QGKTIIIISHDDQ--YFELADQIIKLAA-GCIVK  550 (555)
T ss_pred             CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEE
Confidence            6899999999973  4678999999997 87764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=8.1e-39  Score=307.79  Aligned_cols=174  Identities=24%  Similarity=0.364  Sum_probs=139.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-CeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------   70 (197)
                      +||||||||||+++|+|+++ |++|+|+++ |.++..   ..+++.+|||+|++.+|+. |++||+.++.....      
T Consensus       417 vG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~  494 (1466)
T PTZ00265        417 VGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALS  494 (1466)
T ss_pred             ECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhc
Confidence            69999999999999999998 799999994 677643   2356779999999999985 99999998631000      


Q ss_pred             ---Cc------------------------------cc---------cHHHHHHHHHHHHHHcCCccc-----------cc
Q psy4235          71 ---DR------------------------------RT---------TWLELNKTITRVMENLGINHR-----------RQ   97 (197)
Q Consensus        71 ---~~------------------------------~~---------~~~~~~~~~~~~l~~~~l~~~-----------~~   97 (197)
                         ..                              ..         ......+.+.++++.+++.+.           ..
T Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg  574 (1466)
T PTZ00265        495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG  574 (1466)
T ss_pred             cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence               00                              00         000112456667776666443           34


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235          98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ..+..||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++++ +++|+|+++|++. . .+.||++++|
T Consensus       575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~-i~~aD~Iivl  652 (1466)
T PTZ00265        575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-T-IRYANTIFVL  652 (1466)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-H-HHhCCEEEEE
Confidence            56789999999999999999999999999999999999999999999999975 5899999999974 4 4789999999


Q ss_pred             eC
Q psy4235         177 AH  178 (197)
Q Consensus       177 ~~  178 (197)
                      ++
T Consensus       653 ~~  654 (1466)
T PTZ00265        653 SN  654 (1466)
T ss_pred             eC
Confidence            87

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=285.05  Aligned_cols=169  Identities=27%  Similarity=0.429  Sum_probs=142.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||||+|+|+++ |++|+|.+++.        ..+||++|+.  .+.+..|+.+++...   ..      ..
T Consensus       344 ~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~~------~~  405 (638)
T PRK10636        344 LGRNGAGKSTLIKLLAGELA-PVSGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLARL---AP------QE  405 (638)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHHh---Cc------hh
Confidence            69999999999999999998 79999999741        2589999974  355667888775421   10      11


Q ss_pred             HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ....+.++++.+++. +..++++..|||||||||+||++|+.+|++|||||||++||+.++..+.++|+++  . .|||+
T Consensus       406 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~  482 (638)
T PRK10636        406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVV  482 (638)
T ss_pred             hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEE
Confidence            235678999999996 4689999999999999999999999999999999999999999999999999987  3 49999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~  192 (197)
                      +|||. .++..+||++++|++ |+++ +.|++++..
T Consensus       483 vSHd~-~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~  516 (638)
T PRK10636        483 VSHDR-HLLRSTTDDLYLVHD-GKVEPFDGDLEDYQ  516 (638)
T ss_pred             EeCCH-HHHHHhCCEEEEEEC-CEEEEcCCCHHHHH
Confidence            99997 478899999999987 7775 788888763

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.9e-38  Score=263.74  Aligned_cols=189  Identities=26%  Similarity=0.355  Sum_probs=163.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCc---cccc----ceEEEEecCC--CCCCCCCHHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISR---TVMS----RISGYVAQQD--FLIEELTVLEHLQFMAK   67 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~---~~~~----~~~~~v~q~~--~~~~~ltv~e~l~~~~~   67 (197)
                      +|+||||||-..+.|+++++.+    -+|+|.|+|+++-.   ..++    .+|+++||+|  .+.|-.|+...+.....
T Consensus        42 VGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~  121 (534)
T COG4172          42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR  121 (534)
T ss_pred             EecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH
Confidence            6999999999999999998642    37999999999732   1221    3699999997  47788899888888777


Q ss_pred             ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235          68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL  144 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~  144 (197)
                      .+.  ....+..++++-++|+.+|+.+   .++.+|.+|||||||||.||+||+++|++||.||||++||...+.+|+++
T Consensus       122 ~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L  199 (534)
T COG4172         122 LHR--GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL  199 (534)
T ss_pred             HHh--cccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH
Confidence            664  3345567788999999999964   57889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+++.++ |..++++|||.. .+.+++|||+||.+ |++++.|+.++++.
T Consensus       200 l~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~-G~ivE~~~t~~lF~  247 (534)
T COG4172         200 LKELQAELGMAILFITHDLG-IVRKFADRVYVMQH-GEIVETGTTETLFA  247 (534)
T ss_pred             HHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEec-cEEeecCcHHHHhh
Confidence            9999876 889999999985 89999999999998 99999999988875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4e-38  Score=238.01  Aligned_cols=188  Identities=24%  Similarity=0.317  Sum_probs=162.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      ||.||||||||.|+|+|.++ |++|+|++||+++.-.   ...+.|-++||+|+  +.|.+.+-+-+.....+..  ...
T Consensus        45 IG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T--~~~  121 (267)
T COG4167          45 IGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNT--DLE  121 (267)
T ss_pred             EccCCCcHhHHHHHHhcccC-CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcc--cCC
Confidence            69999999999999999998 7999999999998532   23467899999975  6677777777766655432  234


Q ss_pred             HHHHHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          76 WLELNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      .....+++.+.|..+|| .+.++.++..||-||||||++||||+.+|+++|.||..++||...+.++.++.-++.++ |.
T Consensus       122 ~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi  201 (267)
T COG4167         122 PEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI  201 (267)
T ss_pred             hHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc
Confidence            45566789999999998 47889999999999999999999999999999999999999999999999999999865 88


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +-|.++.|. ..+.+++|.|+||+. |++++.|++.+++.
T Consensus       202 SyiYV~Qhl-G~iKHi~D~viVM~E-G~vvE~G~t~~v~a  239 (267)
T COG4167         202 SYIYVTQHI-GMIKHISDQVLVMHE-GEVVERGSTADVLA  239 (267)
T ss_pred             eEEEEechh-hHhhhhcccEEEEec-CceeecCChhhhhc
Confidence            999999997 488999999999997 99999999998764

>KOG0059|consensus

Probab=100.00  E-value=1.1e-38  Score=295.70  Aligned_cols=190  Identities=27%  Similarity=0.461  Sum_probs=173.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+|||||||++|+|+|..+ |++|+++++|.++...    ..++.+||.||.+.+++.+|.+|++.+.++.+..   .+
T Consensus       597 LG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~  672 (885)
T KOG0059|consen  597 LGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PR  672 (885)
T ss_pred             ecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---Ch
Confidence            59999999999999999998 7999999999998542    2567799999999999999999999999887642   34


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      ....+.++.+++.++|.+.++++++.+|||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.+|
T Consensus       673 ~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aii  752 (885)
T KOG0059|consen  673 SDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAII  752 (885)
T ss_pred             hHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            45667799999999999999999999999999999999999999999999999999999999999999999998877999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ++||.+ +++...|||+.+|.+ |++...|+++++...|.
T Consensus       753 LTSHsM-eE~EaLCtR~aImv~-G~l~ciGs~q~LKsrfG  790 (885)
T KOG0059|consen  753 LTSHSM-EEAEALCTRTAIMVI-GQLRCIGSPQELKSRYG  790 (885)
T ss_pred             EEcCCH-HHHHHHhhhhheeec-CeeEEecChHHHHhhcC
Confidence            999996 589999999999998 88888899999987764

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.8e-38  Score=283.27  Aligned_cols=163  Identities=28%  Similarity=0.321  Sum_probs=137.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEE-----------ECCeeCCcc-----cccceEEEEecCCCCCCC---CCHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-----------LNGCPISRT-----VMSRISGYVAQQDFLIEE---LTVLEH   61 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~~v~q~~~~~~~---ltv~e~   61 (197)
                      +||||||||||+|+|+|+++ |++|+|.           ++|.++...     .....+++.+|...++|.   .||.|+
T Consensus       105 vG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~  183 (590)
T PRK13409        105 LGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVREL  183 (590)
T ss_pred             ECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHH
Confidence            69999999999999999998 7999997           899887431     111235666665433332   299998


Q ss_pred             HHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy4235          62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV  141 (197)
Q Consensus        62 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i  141 (197)
                      +.+.            .....+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||++||+.++.++
T Consensus       184 l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l  251 (590)
T PRK13409        184 LKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV  251 (590)
T ss_pred             HHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence            8631            1235688999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         142 VNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       142 ~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .++|+++++ +.++|++||+.. .+..+||++++|.+
T Consensus       252 ~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~  286 (590)
T PRK13409        252 ARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG  286 (590)
T ss_pred             HHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence            999999988 999999999975 78899999999965

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=9.9e-38  Score=245.34  Aligned_cols=180  Identities=22%  Similarity=0.280  Sum_probs=160.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEec-CCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-QDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q-~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      ||+||||||||+|+|+|.++ |++|+|.++|.-.          ++.. ...+.|.+|.+||+.+......   ...++.
T Consensus        59 iG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~----------~li~lg~Gf~pelTGreNi~l~~~~~G---~~~~ei  124 (249)
T COG1134          59 IGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVA----------PLIELGAGFDPELTGRENIYLRGLILG---LTRKEI  124 (249)
T ss_pred             ECCCCCcHHHHHHHHhCccC-CCCceEEEcceEe----------hhhhcccCCCcccchHHHHHHHHHHhC---ccHHHH
Confidence            69999999999999999999 7999999998642          2222 2345677999999998766542   345678


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      ++.++++.++-+|.++.+.|++.+|.||+-|+++|.|...+|++||+||-.+.-|+.-+++..+.++++.+++.|+|++|
T Consensus       125 ~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VS  204 (249)
T COG1134         125 DEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS  204 (249)
T ss_pred             HHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            88999999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      |++. .+.++||++++|++ |++...|+++++.+.|.
T Consensus       205 Hd~~-~I~~~Cd~~i~l~~-G~i~~~G~~~~vi~~Y~  239 (249)
T COG1134         205 HDLG-AIKQYCDRAIWLEH-GQIRMEGSPEEVIPAYE  239 (249)
T ss_pred             CCHH-HHHHhcCeeEEEeC-CEEEEcCCHHHHHHHHH
Confidence            9975 89999999999998 99999999999998874

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-37  Score=239.08  Aligned_cols=191  Identities=27%  Similarity=0.341  Sum_probs=160.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||.++|+|.-.. +++|+|.++|+++...    ..+.-+...||.|.=+|..|+.+.|..+.+........
T Consensus        36 MGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~  115 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI  115 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc
Confidence            699999999999999997421 5899999999998643    23345789999999999999999999876543211111


Q ss_pred             HHHHHHHHHHHHHHcCCcc-cccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          76 WLELNKTITRVMENLGINH-RRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ..+....+.+.++.+++++ ++++.+. .+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.++.++.++.
T Consensus       116 ~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~  195 (251)
T COG0396         116 LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR  195 (251)
T ss_pred             cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCC
Confidence            2345677889999999986 7788775 6999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcchHHhhc--CeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         154 IVICAIHQPTSGVFEKF--DTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~--d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      +++++||..  .+..+.  |++.+|.+ |+|+..|.+ ++..++
T Consensus       196 ~~liITHy~--rll~~i~pD~vhvl~~-GrIv~sG~~-el~~~l  235 (251)
T COG0396         196 GVLIITHYQ--RLLDYIKPDKVHVLYD-GRIVKSGDP-ELAEEL  235 (251)
T ss_pred             eEEEEecHH--HHHhhcCCCEEEEEEC-CEEEecCCH-HHHHHH
Confidence            999999985  466776  99999998 999999999 666554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=1.1e-37  Score=239.52  Aligned_cols=119  Identities=24%  Similarity=0.286  Sum_probs=107.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.+         ++|++|+..                             
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~---------i~~~~q~~~-----------------------------   71 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT---------PVYKPQYID-----------------------------   71 (177)
T ss_pred             ECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE---------EEEEcccCC-----------------------------
Confidence            59999999999999999998 799999999853         688887532                             


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii~t  159 (197)
                                            ||+|||||++|||||+.+|++++|||||++||+.+++.+.+.++++++++ .++|++|
T Consensus        72 ----------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivs  129 (177)
T cd03222          72 ----------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE  129 (177)
T ss_pred             ----------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence                                  99999999999999999999999999999999999999999999997765 8999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcE
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      |+.. .+..+||++++|+++..
T Consensus       130 H~~~-~~~~~~d~i~~l~~~~~  150 (177)
T cd03222         130 HDLA-VLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             CCHH-HHHHhCCEEEEEcCCCc
Confidence            9974 67889999999987443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.5e-37  Score=280.65  Aligned_cols=173  Identities=20%  Similarity=0.334  Sum_probs=140.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|+|+++ |++|+|.+++.        ..+||++|++  ++.+++.++..+...... ...    ..
T Consensus       541 vG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~-~~~----~~  604 (718)
T PLN03073        541 VGPNGIGKSTILKLISGELQ-PSSGTVFRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCF-PGV----PE  604 (718)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCceEEECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhc-CCC----CH
Confidence            69999999999999999998 79999998652        3589999985  344566666443221111 011    13


Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      +.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++  . .|+|++|
T Consensus       605 ~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivS  681 (718)
T PLN03073        605 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVS  681 (718)
T ss_pred             HHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEE
Confidence            5678899999997 4678999999999999999999999999999999999999999999998888765  3 4999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHhh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLKH  194 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~~  194 (197)
                      |+.. .+..+||++++|.+ |+++ +.|++++..+.
T Consensus       682 Hd~~-~i~~~~drv~~l~~-G~i~~~~g~~~~~~~~  715 (718)
T PLN03073        682 HDEH-LISGSVDELWVVSE-GKVTPFHGTFHDYKKT  715 (718)
T ss_pred             CCHH-HHHHhCCEEEEEEC-CEEEEeCCCHHHHHHH
Confidence            9974 78899999999987 7776 78888876554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.1e-37  Score=301.16  Aligned_cols=176  Identities=24%  Similarity=0.351  Sum_probs=148.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+++  .+|+|++||.++..   ..+++.++||||++.+|+. |+++||..+..      .   
T Consensus      1251 vGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~------~--- 1318 (1490)
T TIGR01271      1251 LGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQ------W--- 1318 (1490)
T ss_pred             ECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccC------C---
Confidence            69999999999999999975  68999999999864   3467889999999999998 99999964321      1   


Q ss_pred             HHHHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQ-----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                       ..+.+.++++.+++.+...           ....+||||||||++|||||+++|+|||||||||+||+.+...|.+.|+
T Consensus      1319 -tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271      1319 -SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred             -CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             1345667777776644322           2335799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +.. .++|+|+++|++.  ....||+|++|++ |++++.|+|+++++
T Consensus      1398 ~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1398 QSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQKLLN 1440 (1490)
T ss_pred             HHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHHHHHc
Confidence            875 4799999999974  3566999999987 99999999999874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-38  Score=237.11  Aligned_cols=156  Identities=31%  Similarity=0.443  Sum_probs=139.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      .||||||||||||+|+|+.+ |++|+|+++|.++...  ...+..-|+--.+.+=+.+||+||+.|....+..      .
T Consensus        34 ~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~  106 (209)
T COG4133          34 TGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------G  106 (209)
T ss_pred             ECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------C
Confidence            39999999999999999999 7999999999998653  2445667888888889999999999998765532      1


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ....+.+.++.+||....|.+++.||.|||+||+|||-++..+++.||||||++||......+..++..-..+|..||.+
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt  186 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT  186 (209)
T ss_pred             chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            23568899999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             ecCCc
Q psy4235         159 IHQPT  163 (197)
Q Consensus       159 th~~~  163 (197)
                      ||++.
T Consensus       187 tHq~l  191 (209)
T COG4133         187 THQPL  191 (209)
T ss_pred             cCCcc
Confidence            99975

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-37  Score=278.46  Aligned_cols=177  Identities=24%  Similarity=0.282  Sum_probs=137.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHH-------------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAK-------------   67 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-------------   67 (197)
                      +||||||||||||+|+|.++ |++|+|.++|..        .++|++|++..+. .|+.+++.-...             
T Consensus        33 vG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~~--------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~  102 (638)
T PRK10636         33 VGKNGCGKSTLLALLKNEIS-ADGGSYTFPGNW--------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDAN  102 (638)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEecCCC--------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHh
Confidence            69999999999999999988 799999998742        3788888643332 466554431100             


Q ss_pred             ----------ccC-CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy4235          68 ----------LTM-DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS  135 (197)
Q Consensus        68 ----------~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~  135 (197)
                                ... ...........++.++++.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~  182 (638)
T PRK10636        103 ERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL  182 (638)
T ss_pred             ccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCH
Confidence                      000 00000011235688899999997 578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235         136 YSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL  192 (197)
Q Consensus       136 ~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~  192 (197)
                      .++.++.++|+++   +.+||++|||. .++..+||++++|++ |++ .+.|+.+...
T Consensus       183 ~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~-G~i~~~~g~~~~~~  235 (638)
T PRK10636        183 DAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQ-QSLFEYTGNYSSFE  235 (638)
T ss_pred             HHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeC-CEEEEecCCHHHHH
Confidence            9999999999876   46999999997 478899999999998 666 4677776543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=2.9e-37  Score=279.16  Aligned_cols=163  Identities=18%  Similarity=0.325  Sum_probs=133.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ +++|+|.+++        ++.++|++|++.+++. |++||+.++.........  ....
T Consensus       484 vG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~--~~~~  551 (659)
T TIGR00954       484 CGPNGCGKSSLFRILGELWP-VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRR--GLSD  551 (659)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhcc--CCCH
Confidence            69999999999999999987 7999998763        3568999999998887 999999875321100000  0113


Q ss_pred             HHHHHHHHHcCCccccccc---------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          81 KTITRVMENLGINHRRQVQ---------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      +.+.++++.+++.+..+++         ..+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++.   
T Consensus       552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---  628 (659)
T TIGR00954       552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---  628 (659)
T ss_pred             HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---
Confidence            4577889999987766553         3789999999999999999999999999999999999999999988763   


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGG  180 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg  180 (197)
                      +.|+|++||+..  ..+.||++++|+.+|
T Consensus       629 ~~tvI~isH~~~--~~~~~d~il~l~~~g  655 (659)
T TIGR00954       629 GITLFSVSHRKS--LWKYHEYLLYMDGRG  655 (659)
T ss_pred             CCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence            789999999974  468899999997544

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.8e-36  Score=232.58  Aligned_cols=134  Identities=25%  Similarity=0.324  Sum_probs=113.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|.     +++|++.++|... . ..++.++|++|                                
T Consensus        27 ~G~nG~GKSTLl~~il-----~~~G~v~~~~~~~-~-~~~~~~~~~~q--------------------------------   67 (176)
T cd03238          27 TGVSGSGKSTLVNEGL-----YASGKARLISFLP-K-FSRNKLIFIDQ--------------------------------   67 (176)
T ss_pred             ECCCCCCHHHHHHHHh-----hcCCcEEECCccc-c-cccccEEEEhH--------------------------------
Confidence            5999999999999985     2689999987632 1 11234677776                                


Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE--PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                         .++++.+++.. ..++++.+||+|||||++|||||+.+  |+++||||||++||+.+++.+.+.|+++++++.+||+
T Consensus        68 ---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIi  144 (176)
T cd03238          68 ---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL  144 (176)
T ss_pred             ---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence               13567788875 47889999999999999999999999  9999999999999999999999999999777899999


Q ss_pred             EecCCcchHHhhcCeEEEEeC
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +||+.. .+ ..||++++|.+
T Consensus       145 vSH~~~-~~-~~~d~i~~l~~  163 (176)
T cd03238         145 IEHNLD-VL-SSADWIIDFGP  163 (176)
T ss_pred             EeCCHH-HH-HhCCEEEEECC
Confidence            999974 44 68999999976

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.7e-36  Score=273.34  Aligned_cols=176  Identities=30%  Similarity=0.375  Sum_probs=134.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHH---------------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFM---------------   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~---------------   65 (197)
                      +||||||||||||+|+|+++ |++|+|.++|..        .++|++|.+......++.+++...               
T Consensus        35 vG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  105 (635)
T PRK11147         35 VGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDIS  105 (635)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence            69999999999999999988 799999998632        256777654332334555543210               


Q ss_pred             ---------------HHccC-CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy4235          66 ---------------AKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP  129 (197)
Q Consensus        66 ---------------~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP  129 (197)
                                     ..... ...........++.++++.+|+.  .++++.+|||||||||+|||||+.+|++||||||
T Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEP  183 (635)
T PRK11147        106 HLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP  183 (635)
T ss_pred             HHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                           00000 00000001245678899999996  3889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235         130 TTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL  192 (197)
Q Consensus       130 ts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~  192 (197)
                      |++||+.++..+.++|+++.   .+||++|||. .++..+||++++|++ |+++ +.|++++.+
T Consensus       184 t~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l~~~~d~i~~L~~-G~i~~~~g~~~~~~  242 (635)
T PRK11147        184 TNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFIRNMATRIVDLDR-GKLVSYPGNYDQYL  242 (635)
T ss_pred             CCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHHHHhcCeEEEEEC-CEEEEecCCHHHHH
Confidence            99999999999999999873   5999999997 478899999999998 7765 568876543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.8e-37  Score=223.79  Aligned_cols=170  Identities=27%  Similarity=0.322  Sum_probs=142.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCccc-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTV-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+..+.|.+.+.  .+|++++|+++++..+ -+|++|++||++-+||.++|.+|+.|.....    .+..
T Consensus        34 MGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~----~KG~  109 (213)
T COG4136          34 MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT----LKGN  109 (213)
T ss_pred             ECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc----cccH
Confidence            6999999999999999988632  4899999999987543 4577999999999999999999999865322    1223


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL-ACESRIVI  156 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~~~~~~ii  156 (197)
                      ..+..++..+++.+|....++.|.+||||||-||++-|+|+..|+.++||||||.||..-+.++.++.-.- +.-|..++
T Consensus       110 aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv  189 (213)
T COG4136         110 ARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTV  189 (213)
T ss_pred             HHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            45677889999999999999999999999999999999999999999999999999999999999987654 45589999


Q ss_pred             EEecCCcchHHhhcCeEEEE
Q psy4235         157 CAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l  176 (197)
                      .+|||.. ++ ..-.||+-+
T Consensus       190 ~VTHD~~-Dv-pagsrVie~  207 (213)
T COG4136         190 QVTHDLQ-DV-PAGSRVIEM  207 (213)
T ss_pred             EEecccc-cC-CCCCeeeee
Confidence            9999975 33 344455433

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=3.6e-36  Score=224.28  Aligned_cols=112  Identities=34%  Similarity=0.443  Sum_probs=103.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.        +.++|++|                                
T Consensus        32 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~~--------------------------------   70 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGELE-PDEGIVTWGST--------VKIGYFEQ--------------------------------   70 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCCC-CCceEEEECCe--------EEEEEEcc--------------------------------
Confidence            59999999999999999998 79999999984        35899998                                


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                                            ||+||+||++|||||+.+|+++||||||++||+.++..+.+.++++   +.++|++||
T Consensus        71 ----------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th  125 (144)
T cd03221          71 ----------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSH  125 (144)
T ss_pred             ----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEEC
Confidence                                  9999999999999999999999999999999999999999999887   369999999


Q ss_pred             CCcchHHhhcCeEEEEeCCc
Q psy4235         161 QPTSGVFEKFDTVSLLAHGG  180 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg  180 (197)
                      +.. .+..+||++++|++ |
T Consensus       126 ~~~-~~~~~~d~v~~l~~-g  143 (144)
T cd03221         126 DRY-FLDQVATKIIELED-G  143 (144)
T ss_pred             CHH-HHHHhCCEEEEEeC-C
Confidence            974 67889999999987 5

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.9e-36  Score=262.84  Aligned_cols=178  Identities=31%  Similarity=0.346  Sum_probs=146.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-c-cc----
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-R-RT----   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~-~~----   74 (197)
                      ||+||||||||||+|+|... |++|+|...+.        -+++|++|++.+.+..||.+.+......... . ..    
T Consensus        35 vG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~  105 (530)
T COG0488          35 VGRNGAGKSTLLKILAGELE-PDSGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY  105 (530)
T ss_pred             ECCCCCCHHHHHHHHcCCCc-CCCCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHH
Confidence            69999999999999999998 79999987532        3489999999999999999988764321000 0 00    


Q ss_pred             ---------------------cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy4235          75 ---------------------TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGL  133 (197)
Q Consensus        75 ---------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~L  133 (197)
                                           ..-..+.++..++..+|+... ++++++||||||.||+||+||+.+|++||||||||.|
T Consensus       106 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL  184 (530)
T COG0488         106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL  184 (530)
T ss_pred             HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence                                 000123567788888998877 9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         134 DSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       134 D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |..+..++.+.|+++  +| |+|+||||- .++-+.|++|+-++.|....|.|..+...
T Consensus       185 D~~~i~WLe~~L~~~--~g-tviiVSHDR-~FLd~V~t~I~~ld~g~l~~y~Gny~~~~  239 (530)
T COG0488         185 DLESIEWLEDYLKRY--PG-TVIVVSHDR-YFLDNVATHILELDRGKLTPYKGNYSSYL  239 (530)
T ss_pred             CHHHHHHHHHHHHhC--CC-cEEEEeCCH-HHHHHHhhheEEecCCceeEecCCHHHHH
Confidence            999999999999865  35 999999995 69999999999999855567888877554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.8e-35  Score=285.86  Aligned_cols=175  Identities=20%  Similarity=0.291  Sum_probs=138.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH-
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL-   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-   79 (197)
                      +|||||||||||++|+|+++ |++|+|.++|          .++|++|++.+++. ||+||+.|+....  ........ 
T Consensus       458 ~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~~--~~~~~~~~~  523 (1490)
T TIGR01271       458 AGSTGSGKSSLLMMIMGELE-PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSYD--EYRYTSVIK  523 (1490)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECC----------EEEEEeCCCccCCc-cHHHHHHhccccc--hHHHHHHHH
Confidence            69999999999999999998 7999999987          38999999999886 9999999864211  00000000 


Q ss_pred             HHHHHHHHHHcCC--cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEE
Q psy4235          80 NKTITRVMENLGI--NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQLACESRIVI  156 (197)
Q Consensus        80 ~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~~~ii  156 (197)
                      .....+.++.+..  ......++.+||||||||++||||++.+|+++||||||++||+.+.+.+++. +..+. +++|+|
T Consensus       524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvi  602 (1490)
T TIGR01271       524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRI  602 (1490)
T ss_pred             HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEE
Confidence            0112233333322  2234567889999999999999999999999999999999999999999974 66654 489999


Q ss_pred             EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++||++. . ...||++++|++ |+++..|+++++..
T Consensus       603 lvtH~~~-~-~~~ad~ii~l~~-g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       603 LVTSKLE-H-LKKADKILLLHE-GVCYFYGTFSELQA  636 (1490)
T ss_pred             EEeCChH-H-HHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9999974 4 456999999987 88989999988764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.2e-36  Score=288.84  Aligned_cols=168  Identities=21%  Similarity=0.379  Sum_probs=135.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||+|||||||+++|+|.++ |++|.+.         .+++.++||+|++.+|+. |++|||.|+...      +    +
T Consensus       649 vG~sGSGKSTLl~lLlG~~~-~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------~----~  707 (1495)
T PLN03232        649 VGGTGEGKTSLISAMLGELS-HAETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------E----S  707 (1495)
T ss_pred             ECCCCCcHHHHHHHHhCCCc-ccCCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCcc------C----H
Confidence            69999999999999999998 6888663         235679999999999987 999999986421      1    2


Q ss_pred             HHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q psy4235          81 KTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l  148 (197)
                      +++.++++..++.           .....+..+||||||||++||||++.+|+++|||||||+||+.+.+.+++. ++..
T Consensus       708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~  787 (1495)
T PLN03232        708 ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE  787 (1495)
T ss_pred             HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence            3344455544443           223344567999999999999999999999999999999999999988765 5543


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       .+++|+|++||+..  ....||+|++|++ |++++.|+.+++..
T Consensus       788 -l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        788 -LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFAELSK  828 (1495)
T ss_pred             -hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHHHHHh
Confidence             35789999999974  4678999999987 99999999988764

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1e-35  Score=288.67  Aligned_cols=167  Identities=18%  Similarity=0.362  Sum_probs=137.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce-eEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~-G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||+|||||||+++|+|.++ |++ |+|.+          +..++||+|++.+|+. |++|||.|+...          .
T Consensus       649 vG~sGSGKSTLl~lLlG~~~-~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~----------d  706 (1622)
T PLN03130        649 VGSTGEGKTSLISAMLGELP-PRSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF----------D  706 (1622)
T ss_pred             ECCCCCCHHHHHHHHHHhhc-cCCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc----------c
Confidence            69999999999999999998 799 89975          3568999999999987 999999986421          1


Q ss_pred             HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHH
Q psy4235          80 NKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQ  147 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~  147 (197)
                      ++++.++++..++.           .....+..+||||||||++||||++.+|+++|||||||+||+.+.+.+++ .++.
T Consensus       707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~  786 (1622)
T PLN03130        707 PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD  786 (1622)
T ss_pred             HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhH
Confidence            23445555554443           23334556799999999999999999999999999999999999988864 5655


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +. +++|+|++||+..  ....||+|++|++ |++++.|+.+++.+
T Consensus       787 ~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        787 EL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYEELSN  828 (1622)
T ss_pred             Hh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHHHHHh
Confidence            43 5799999999973  5788999999987 99999999998864

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.1e-35  Score=285.90  Aligned_cols=177  Identities=24%  Similarity=0.362  Sum_probs=139.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|||||||||||++|+|.++ |++|+|.+.          +.++|++|++.+++ .|++||+.|+..... .........
T Consensus       692 iG~nGsGKSTLL~~i~G~~~-~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~-~~~~~~~~~  758 (1560)
T PTZ00243        692 LGATGSGKSTLLQSLLSQFE-ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDEEDA-ARLADAVRV  758 (1560)
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCChhhH-HHHHHHHHH
Confidence            69999999999999999998 799999863          45899999998875 599999998532110 000000011


Q ss_pred             HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          81 KTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+++.++.+  |+....++++.+||||||||++|||||+.+|+++||||||++||+.+.+.+++.+......++|+|++
T Consensus       759 ~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlv  838 (1560)
T PTZ00243        759 SQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA  838 (1560)
T ss_pred             hhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            1234456666  67667788899999999999999999999999999999999999999998877442222358999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++. . ...||++++|++ |++.+.|+++++++
T Consensus       839 TH~~~-~-~~~ad~ii~l~~-G~i~~~G~~~~l~~  870 (1560)
T PTZ00243        839 THQVH-V-VPRADYVVALGD-GRVEFSGSSADFMR  870 (1560)
T ss_pred             eCCHH-H-HHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence            99974 3 478999999997 89999999988753

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.7e-35  Score=286.66  Aligned_cols=172  Identities=21%  Similarity=0.358  Sum_probs=137.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|.++ |++|+|.++|          .++|++|++.+++ .|++||+.|+...      ..+..+
T Consensus       670 vG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~~  731 (1522)
T TIGR00957       670 VGQVGCGKSSLLSALLAEMD-KVEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NEKYYQ  731 (1522)
T ss_pred             ECCCCCCHHHHHHHHhCCCc-cCCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CHHHHH
Confidence            69999999999999999998 7999999987          3899999998876 5999999986321      111111


Q ss_pred             HHHH--HHHHHcC-----CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hC
Q psy4235          81 KTIT--RVMENLG-----INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA--CE  151 (197)
Q Consensus        81 ~~~~--~~l~~~~-----l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~  151 (197)
                      +.++  .+.+.++     .+.....++.+||||||||++||||++.+|+++|||||||+||+.+.+.+++.+.+..  .+
T Consensus       732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~  811 (1522)
T TIGR00957       732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK  811 (1522)
T ss_pred             HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc
Confidence            1111  1122222     2334567788999999999999999999999999999999999999999999997532  34


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++|+|++||+.. . ...||++++|++ |+++..|+++++.+
T Consensus       812 ~~tvIlvTH~~~-~-l~~~D~ii~l~~-G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       812 NKTRILVTHGIS-Y-LPQVDVIIVMSG-GKISEMGSYQELLQ  850 (1522)
T ss_pred             CCEEEEEeCChh-h-hhhCCEEEEecC-CeEEeeCCHHHHHh
Confidence            789999999974 4 456999999987 99999999988764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-35  Score=223.07  Aligned_cols=184  Identities=26%  Similarity=0.369  Sum_probs=146.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee---CC-----cc----cccceEEEEecCCC--CCCCCC----HHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP---IS-----RT----VMSRISGYVAQQDF--LIEELT----VLEHL   62 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~---~~-----~~----~~~~~~~~v~q~~~--~~~~lt----v~e~l   62 (197)
                      +|+|||||||||+||++.+. |++|+|.+...+   .+     ..    -.+..+|||.|+|.  +-...+    +-|-+
T Consensus        38 VGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl  116 (258)
T COG4107          38 VGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL  116 (258)
T ss_pred             EecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhH
Confidence            59999999999999999998 799999986432   21     11    12334799999975  222222    33333


Q ss_pred             HHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy4235          63 QFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV  141 (197)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i  141 (197)
                      +-....+      .-..++.+.+|++.+.++ ...+..|..+||||+||+.|||-|+..|+++++||||.|||...+.++
T Consensus       117 ma~G~RH------YG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARL  190 (258)
T COG4107         117 MAIGARH------YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL  190 (258)
T ss_pred             Hhhhhhh------hhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHH
Confidence            2211111      124567788999999997 567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         142 VNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       142 ~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++++.+..+ +.+++|+|||.. .+.-.+||..+|++ |.+++.|-.+.++.
T Consensus       191 LDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~-g~vve~GLTDrvLD  241 (258)
T COG4107         191 LDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQ-GQVVESGLTDRVLD  241 (258)
T ss_pred             HHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecC-CCEecccccccccc
Confidence            9999999876 889999999974 77788999999987 88888888877654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.7e-35  Score=219.81  Aligned_cols=122  Identities=45%  Similarity=0.674  Sum_probs=110.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|+++ +++|+|+++|.++...   .+.+.++|++|                             
T Consensus        31 ~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-----------------------------   80 (157)
T cd00267          31 VGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ-----------------------------   80 (157)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee-----------------------------
Confidence            59999999999999999998 7999999999887532   23456889988                             


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                                               ||+||+||++|||+++.+|++++|||||++||+.++..+.+.+++++..+.++++
T Consensus        81 -------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~  135 (157)
T cd00267          81 -------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII  135 (157)
T ss_pred             -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence                                     9999999999999999999999999999999999999999999998776789999


Q ss_pred             EecCCcchHHhhcCeEEEEeC
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +||+.. .+...||+++++.+
T Consensus       136 ~sh~~~-~~~~~~d~i~~l~~  155 (157)
T cd00267         136 VTHDPE-LAELAADRVIVLKD  155 (157)
T ss_pred             EeCCHH-HHHHhCCEEEEEeC
Confidence            999974 77888999999986

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0056|consensus

Probab=100.00  E-value=1.4e-35  Score=251.47  Aligned_cols=183  Identities=25%  Similarity=0.438  Sum_probs=147.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||+||||++|++..+.. ..+|.|.+||+++..   ..+|+.||.||||..+|++ |+..|+.|+.....+     +
T Consensus       570 VG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asn-----e  642 (790)
T KOG0056|consen  570 VGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASN-----E  642 (790)
T ss_pred             ECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCCh-----H
Confidence            69999999999999998887 789999999999864   4577889999999999988 999999986432221     1


Q ss_pred             HHHHH--HHHHHHH-cCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKT--ITRVMEN-LGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~--~~~~l~~-~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+.  +..+-++ ++..+    ....+.-.|||||||||+|||++++.|.+++|||.||+||..+.+.|...|.++++
T Consensus       643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca  722 (790)
T KOG0056|consen  643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA  722 (790)
T ss_pred             HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence            11111  1122222 23333    33345557999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                       ++|.|++.|... . .-.+|.|+++++ |+|++.|..+|++..
T Consensus       723 -~RTtIVvAHRLS-T-ivnAD~ILvi~~-G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  723 -NRTTIVVAHRLS-T-IVNADLILVISN-GRIVERGRHEELLKR  762 (790)
T ss_pred             -CCceEEEeeeeh-h-eecccEEEEEeC-CeEeecCcHHHHHhc
Confidence             678888999975 3 456999999988 999999999998764

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-35  Score=242.56  Aligned_cols=188  Identities=24%  Similarity=0.377  Sum_probs=149.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||+|+||||++++|..++. +.+|.|.++|+++..   ...++.||.|||+..+|.+ |...|+.++............
T Consensus       295 Vg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aa  372 (497)
T COG5265         295 VGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAA  372 (497)
T ss_pred             EeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHH
Confidence            59999999999999999998 799999999999854   3567889999999999987 999999986432211111111


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+...++.+  |++.....+.-.|||||||||+|||+++++|++|+|||.||+||..+.++|...|++.+ .|.|.
T Consensus       373 a~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rtt  451 (497)
T COG5265         373 AEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTT  451 (497)
T ss_pred             HHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeE
Confidence            1122333444443  23333344455799999999999999999999999999999999999999999999987 57899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +++.|... . .--+|.+++|++ |+|++.|+.++++..
T Consensus       452 lviahrls-t-i~~adeiivl~~-g~i~erg~h~~ll~~  487 (497)
T COG5265         452 LVIAHRLS-T-IIDADEIIVLDN-GRIVERGTHEELLAA  487 (497)
T ss_pred             EEEeehhh-h-ccCCceEEEeeC-CEEEecCcHHHHHHc
Confidence            99999975 3 455899999998 999999999998764

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=2.8e-34  Score=224.55  Aligned_cols=151  Identities=17%  Similarity=0.248  Sum_probs=121.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc---------eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV---------QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~---------~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+.. +.         .|++.+.|++.......+.++|+||++..+          |.  .   
T Consensus        28 ~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~---   91 (197)
T cd03278          28 VGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--I---   91 (197)
T ss_pred             ECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--E---
Confidence            59999999999999999875 23         346778887764433456799999998766          11  0   


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                       .     ..+++.++++.   .+..++++.+||+|||||++||++++    .+|++++|||||++||+..+..+.+.|++
T Consensus        92 -~-----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~  162 (197)
T cd03278          92 -I-----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKE  162 (197)
T ss_pred             -E-----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence             0     02355666766   45678899999999999999999997    46799999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCcchHHhhcCeEEEEeCC
Q psy4235         148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHG  179 (197)
Q Consensus       148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~g  179 (197)
                      +++ +.+||++||++. . ...||+++.+...
T Consensus       163 ~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~~  191 (197)
T cd03278         163 FSK-ETQFIVITHRKG-T-MEAADRLYGVTMQ  191 (197)
T ss_pred             hcc-CCEEEEEECCHH-H-HhhcceEEEEEec
Confidence            865 689999999974 4 5789999998763

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1e-35  Score=223.39  Aligned_cols=181  Identities=27%  Similarity=0.369  Sum_probs=156.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      ||||||||||||-.++|+.+  -+|+|.++|.++..   ..+.+.-+|+.|+..-...|.|+.++.+.-        +..
T Consensus        31 iGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q--------P~~  100 (248)
T COG4138          31 VGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ--------PDK  100 (248)
T ss_pred             ECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC--------chH
Confidence            69999999999999999975  69999999999853   234455689999877777789999887632        123


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT-------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +....++++...+++++++.+.+..|||||.|||-+|...++       ..++|++|||.++||...+..+..+|.+++.
T Consensus       101 ~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~  180 (248)
T COG4138         101 TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ  180 (248)
T ss_pred             HHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh
Confidence            445678899999999999999999999999999999998764       3479999999999999999999999999999


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|.+||+++||.+ .-.+.+|+++.+.. |++...|..+|++.
T Consensus       181 ~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~eVlt  221 (248)
T COG4138         181 QGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREEVLT  221 (248)
T ss_pred             CCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhhhcC
Confidence            9999999999987 67788999999988 99999999988764

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.4e-34  Score=261.21  Aligned_cols=181  Identities=24%  Similarity=0.236  Sum_probs=131.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc---CCCceeEEEECCeeCCccc-----------------ccceEEEEecCCCCCCCCCHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRV---KGLVQGEILLNGCPISRTV-----------------MSRISGYVAQQDFLIEELTVLE   60 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~---~~~~~G~i~~~g~~~~~~~-----------------~~~~~~~v~q~~~~~~~ltv~e   60 (197)
                      +||||||||||||+|+|..   . |++|+|.+.++.+....                 .++.++|++|++.+... ++.+
T Consensus       209 vG~NGsGKSTLLr~l~g~~~~g~-p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~  286 (718)
T PLN03073        209 VGRNGTGKTTFLRYMAMHAIDGI-PKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETG  286 (718)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCC-CCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccc
Confidence            6999999999999999864   3 57899976554421100                 11225677775433221 1111


Q ss_pred             HH-----------------HHHHH-ccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCC
Q psy4235          61 HL-----------------QFMAK-LTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEP  121 (197)
Q Consensus        61 ~l-----------------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p  121 (197)
                      +.                 .-... +....   .-....++.++++.+|+. +..++++.+||||||||++||+||+.+|
T Consensus       287 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p  363 (718)
T PLN03073        287 KGKGANKDGVDKDAVSQRLEEIYKRLELID---AYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEP  363 (718)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            11                 00000 00000   002345677899999996 5578899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHH
Q psy4235         122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKV  191 (197)
Q Consensus       122 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~  191 (197)
                      ++|||||||++||+.++.++.++|+++   +.|+|++||+. ..+...||++++|++ |++. +.|+.++.
T Consensus       364 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~l~~-g~i~~~~g~~~~~  429 (718)
T PLN03073        364 DLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-EFLNTVVTDILHLHG-QKLVTYKGDYDTF  429 (718)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEeCCCHHHH
Confidence            999999999999999999999999886   67999999997 478899999999998 7764 67777544

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.9e-33  Score=226.79  Aligned_cols=135  Identities=23%  Similarity=0.328  Sum_probs=114.2

Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC-
Q psy4235          43 SGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE-  120 (197)
Q Consensus        43 ~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~-  120 (197)
                      +.|..++...+..|||.|++.|+....         ...++.++++.+||.+ .+++++.+|||||+||++||++|+.+ 
T Consensus       118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~  188 (261)
T cd03271         118 VRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS  188 (261)
T ss_pred             cCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCC
Confidence            345555656667899999999876432         1245678999999987 58999999999999999999999996 


Q ss_pred             --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecCh
Q psy4235         121 --PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQV  188 (197)
Q Consensus       121 --p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~  188 (197)
                        |+++||||||+|||+..+..+.+.|++++++|.|+|+++|++. .+ ..||+++.|.     ++|++++.|++
T Consensus       189 ~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence              7999999999999999999999999999888999999999974 44 6799999993     35999988864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.5e-34  Score=212.41  Aligned_cols=172  Identities=23%  Similarity=0.301  Sum_probs=144.3

Q ss_pred             CCCCCcHHHHHHHHhcCcCCCceeEEEEC--CeeCC-----cc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           2 SPSGAGKTTLLAALNKRVKGLVQGEILLN--GCPIS-----RT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~--g~~~~-----~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      ||||||||||||+|.|.+. |++|+|++.  |.-++     +.   . .++.+|||.|--...|..+..|-++...... 
T Consensus        44 G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~-  121 (235)
T COG4778          44 GPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-  121 (235)
T ss_pred             CCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc-
Confidence            8999999999999999998 799999985  33232     11   1 2356899999988888888888877665432 


Q ss_pred             CccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                        ....+..+.++..++.++++.+. +.-.|..+||||+|||.|||.++.+-+||+|||||++||..+++-+.++|++.+
T Consensus       122 --gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K  199 (235)
T COG4778         122 --GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK  199 (235)
T ss_pred             --CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence              23345567788999999999754 677899999999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .+|..++=+-||. +.-...|||++-+..
T Consensus       200 a~GaAlvGIFHDe-evre~vadR~~~~~~  227 (235)
T COG4778         200 ARGAALVGIFHDE-EVREAVADRLLDVSA  227 (235)
T ss_pred             hcCceEEEeeccH-HHHHHHhhheeeccc
Confidence            8999999999995 466778999988754

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4e-32  Score=216.64  Aligned_cols=100  Identities=23%  Similarity=0.348  Sum_probs=90.7

Q ss_pred             HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          84 TRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        84 ~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      .++++.+++.+ ..++++.+||||||||++|||||+.+|  ++|||||||++||+..+..+.+.|++++++|.|+|++||
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH  197 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH  197 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            56899999986 589999999999999999999999998  599999999999999999999999999877899999999


Q ss_pred             CCcchHHhhcCeEEEE------eCCcEEEEec
Q psy4235         161 QPTSGVFEKFDTVSLL------AHGGLLAYHG  186 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l------~~gg~i~~~g  186 (197)
                      ++. .+ .+||++++|      ++ |+++++|
T Consensus       198 ~~~-~~-~~~d~i~~l~~~~~~~~-G~iv~~g  226 (226)
T cd03270         198 DED-TI-RAADHVIDIGPGAGVHG-GEIVAQG  226 (226)
T ss_pred             CHH-HH-HhCCEEEEeCCCccccC-CEEEecC
Confidence            974 44 699999999      65 8888765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=9.6e-34  Score=229.19  Aligned_cols=172  Identities=16%  Similarity=0.199  Sum_probs=133.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCe-eCCc-----ccccceEEEEecCC---------CCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGC-PISR-----TVMSRISGYVAQQD---------FLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~-~~~~-----~~~~~~~~~v~q~~---------~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+++|++++. +. .|++++.+. ++-.     ......+++++|++         .+.+.+||.+++.+
T Consensus        31 vG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~  109 (251)
T cd03273          31 TGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVL  109 (251)
T ss_pred             ECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEc
Confidence            69999999999999999987 44 568888776 4311     11234689999985         34567889888765


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCc--------------------ccccccCCCCCHHHHHHHHHHHHHh----hC
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGIN--------------------HRRQVQISGLSGGQRKRLALAVQLL----TE  120 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgGq~qrv~ia~al~----~~  120 (197)
                      ......... ......+.+.++++.+++.                    +..++++.+||+|||||++||+||+    .+
T Consensus       110 ~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~  188 (251)
T cd03273         110 GGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKP  188 (251)
T ss_pred             CCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccC
Confidence            432111000 0112346788899999986                    4456889999999999999999998    57


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       121 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      |+++|+||||++||+..+..+.+.|++++ +|.++|++||+.  ++...||+++-+.
T Consensus       189 ~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         189 APMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence            89999999999999999999999999985 478999999994  5678899998776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=2e-33  Score=206.99  Aligned_cols=114  Identities=44%  Similarity=0.656  Sum_probs=99.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+||||||||+++|+|..+ |++|+|.++|.++..   ...++.++|++|++.+++.+|+.||                
T Consensus        17 ~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~----------------   79 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN----------------   79 (137)
T ss_dssp             EESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH----------------
T ss_pred             EccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            59999999999999999998 699999999999865   2345679999999999999999999                


Q ss_pred             HHHHHHHHHHHHcCCcccccccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235          78 ELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALAVQLLTEPQILFCDEPTT  131 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGq~qrv~ia~al~~~p~llllDEPts  131 (197)
                      .....+.++++.+++.+..++.+    .+||+|||||++||+||+.+|+++|||||||
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            12345778888888776555555    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=1.2e-32  Score=221.45  Aligned_cols=172  Identities=21%  Similarity=0.324  Sum_probs=121.7

Q ss_pred             CCCCCCcHHHHHHHHhc----------------CcCCCcee--------EEEECCee----CC--cccccceEEEEecCC
Q psy4235           1 MSPSGAGKTTLLAALNK----------------RVKGLVQG--------EILLNGCP----IS--RTVMSRISGYVAQQD   50 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g----------------~~~~~~~G--------~i~~~g~~----~~--~~~~~~~~~~v~q~~   50 (197)
                      +||||||||||+++|++                ++. +.+|        +|.+++.+    +.  ....++.++|++|+.
T Consensus        29 ~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~  107 (243)
T cd03272          29 VGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY  107 (243)
T ss_pred             ECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE
Confidence            69999999999999983                333 3455        66666532    11  123456689999988


Q ss_pred             CCCC-CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----CCCEEE
Q psy4235          51 FLIE-ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----EPQILF  125 (197)
Q Consensus        51 ~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----~p~lll  125 (197)
                      .+++ .+|..|...+............  ......++.+.+++.+..++++.+||||||||++|||||+.    +|+++|
T Consensus       108 ~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~ill  185 (243)
T cd03272         108 FLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYL  185 (243)
T ss_pred             EECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence            7776 4677666555443321110000  00001123334556666788999999999999999999974    589999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         126 CDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       126 lDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +||||++||+.+++.+.+.|+++++ +.++|+++|..  ++..+||++++|.-
T Consensus       186 lDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~  235 (243)
T cd03272         186 FDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF  235 (243)
T ss_pred             EECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence            9999999999999999999999865 66777766663  57899999998863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=9.7e-32  Score=235.81  Aligned_cols=171  Identities=26%  Similarity=0.342  Sum_probs=143.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||+|||||||+|+|... |.+|+|.+.-.        -.+||+.|+. .+.+..|+.|++.-....         ..
T Consensus       354 iG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~---------~~  415 (530)
T COG0488         354 VGPNGAGKSTLLKLLAGELG-PLSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFPD---------GD  415 (530)
T ss_pred             ECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCcc---------cc
Confidence            69999999999999999888 68999986421        3489999986 555778999988753211         01


Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      +..+...|..|++. +...++++.||||||.|+.+|+.++.+|.+||||||||.||..+...+.+.|..+   ..|+|+|
T Consensus       416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~V  492 (530)
T COG0488         416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLV  492 (530)
T ss_pred             HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEE
Confidence            46788999999997 5578999999999999999999999999999999999999999999999999887   4699999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |||. .++...|++++.+.+ +...+.|..++..+.
T Consensus       493 SHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~  526 (530)
T COG0488         493 SHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYLEQ  526 (530)
T ss_pred             eCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence            9996 699999999999986 555566888776543

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.98  E-value=1.6e-32  Score=215.76  Aligned_cols=155  Identities=21%  Similarity=0.253  Sum_probs=120.4

Q ss_pred             CCCCCCcHHHHHHHHh----cCcCCCceeEEEECCeeCCcccccceEEEEecCC-----CCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALN----KRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-----FLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~----g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|.    |... +++|.+..+...+........+++++|++     .....+|+.+|+.+..     
T Consensus        28 ~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~-----  101 (204)
T cd03240          28 VGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCH-----  101 (204)
T ss_pred             ECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec-----
Confidence            5999999999999995    8776 57776652222233333445689999987     3445568888876521     


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR------LALAVQLLTEPQILFCDEPTTGLDSYSAN-NVVNL  144 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr------v~ia~al~~~p~llllDEPts~LD~~~~~-~i~~~  144 (197)
                              +..+.+.+         ++++..||+||+||      ++||+|++.+|+++++||||++||+..+. .+.++
T Consensus       102 --------~~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~  164 (204)
T cd03240         102 --------QGESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEI  164 (204)
T ss_pred             --------hHHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHH
Confidence                    11222222         77889999999996      78999999999999999999999999999 99999


Q ss_pred             HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235         145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGG  180 (197)
Q Consensus       145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg  180 (197)
                      |++++++ +.++|++||++.  ....||+++.|.+.|
T Consensus       165 l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~  199 (204)
T cd03240         165 IEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG  199 (204)
T ss_pred             HHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence            9999876 789999999963  457899999997755

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0054|consensus

Probab=99.98  E-value=6.3e-32  Score=253.93  Aligned_cols=168  Identities=24%  Similarity=0.408  Sum_probs=143.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+-|||||+||.+|.|-.+ ..+|+|.++|.          ++|++|.|-+++. ||+|||.|+..+          ++
T Consensus       553 vG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~----------d~  610 (1381)
T KOG0054|consen  553 VGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY----------DE  610 (1381)
T ss_pred             ECCCCCCHHHHHHHHhcCcc-cccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc----------cH
Confidence            69999999999999999998 79999999875          7999999999987 999999997543          23


Q ss_pred             HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ++.+++++...|...           ...+.-+||||||||++||||+.++++++|||.|+|++|....+.+++-.-.-.
T Consensus       611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~  690 (1381)
T KOG0054|consen  611 ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL  690 (1381)
T ss_pred             HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh
Confidence            556666666655432           234567899999999999999999999999999999999999999876665444


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      -+++|+|++||+.  ...+.||.|++|++ |+|...|+.+|+.+
T Consensus       691 L~~KT~ILVTHql--~~L~~ad~Iivl~~-G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  691 LRGKTVILVTHQL--QFLPHADQIIVLKD-GKIVESGTYEELLK  731 (1381)
T ss_pred             hcCCEEEEEeCch--hhhhhCCEEEEecC-CeEecccCHHHHHh
Confidence            4689999999975  46889999999987 99999999999874

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.98  E-value=1.2e-31  Score=211.99  Aligned_cols=165  Identities=19%  Similarity=0.164  Sum_probs=118.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC--eeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG--CPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|++.+..+..+....+.  ..+........++++||++....  ++..+.          ......
T Consensus        34 ~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~  101 (213)
T cd03279          34 CGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQ  101 (213)
T ss_pred             ECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHH
Confidence            5999999999999999644323444444321  11222233456899999864211  111111          111111


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ..+.+  .+...++.+..++++.+||+||+||++||||++.          +|+++||||||++||+.....+.+.++++
T Consensus       102 ~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~  179 (213)
T cd03279         102 FTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI  179 (213)
T ss_pred             HHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            11111  2344456677789999999999999999999985          57899999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGG  180 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg  180 (197)
                      ++++.|+|++||+.. .+..+||+++++++||
T Consensus       180 ~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         180 RTENRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             HhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence            877899999999974 7889999999998854

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054|consensus

Probab=99.98  E-value=7.1e-32  Score=253.56  Aligned_cols=178  Identities=25%  Similarity=0.330  Sum_probs=148.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|+.|||||||.++|-.+.. |.+|+|.|||.|+..   ..+|++++.+||+|.+|.+ |++.||.=+...         
T Consensus      1172 VGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~--------- 1240 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY--------- 1240 (1381)
T ss_pred             eCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc---------
Confidence            69999999999999999888 699999999999875   4578889999999999999 999998633221         


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                       ..+.+.+.|+..+|           +.....-..++|-||||.++|||||+++++||+|||.|+++|+++-..|.+.||
T Consensus      1241 -sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1241 -SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred             -CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHH
Confidence             12344445555444           333334457899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +.-+ ++|||.+.|... .+.. ||||+||++ |++++.++|.++++.
T Consensus      1320 ~~F~-dcTVltIAHRl~-TVmd-~DrVlVld~-G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1320 EEFK-DCTVLTIAHRLN-TVMD-SDRVLVLDA-GRVVEFDSPAELLSD 1363 (1381)
T ss_pred             HHhc-CCeEEEEeeccc-hhhh-cCeEEEeeC-CeEeecCChHHHHhC
Confidence            8643 689999999986 4544 899999998 999999999998864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4e-31  Score=227.90  Aligned_cols=181  Identities=25%  Similarity=0.392  Sum_probs=153.9

Q ss_pred             CCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecC---CCCCCCCCHHHHHHHHHHccCC-c-
Q psy4235           2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQ---DFLIEELTVLEHLQFMAKLTMD-R-   72 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ltv~e~l~~~~~~~~~-~-   72 (197)
                      |-=|||+|-|+++|.|..+ +.+|+|.++|+++...    ..+.-++|||.+   ..++..++|.+|+.+....... . 
T Consensus       292 GLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~  370 (500)
T COG1129         292 GLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG  370 (500)
T ss_pred             ccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc
Confidence            5679999999999999766 6899999999998543    234568999987   4689999999999887221111 1 


Q ss_pred             cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ........+.++++.+.+++. ...+.++.+||||.||||.|||.|..+|++|||||||.|+|.-++.+|+++|++++++
T Consensus       371 ~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~  450 (500)
T COG1129         371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE  450 (500)
T ss_pred             ccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC
Confidence            233445567788999999996 4467899999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      |.+||++|.++. ++...||||++|++ |+++..
T Consensus       451 G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e  482 (500)
T COG1129         451 GKAILMISSELP-ELLGLSDRILVMRE-GRIVGE  482 (500)
T ss_pred             CCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence            999999999975 79999999999997 888754

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=5.9e-33  Score=219.36  Aligned_cols=163  Identities=17%  Similarity=0.171  Sum_probs=122.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-----cccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-----RRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~   75 (197)
                      +||||||||||+++|.-           ++|.+... ...+.+++++|+..+++.+|+.+++.++......     ....
T Consensus        31 vGpNGaGKSTll~~i~~-----------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   98 (212)
T cd03274          31 VGPNGSGKSNVIDSMLF-----------VFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGID   98 (212)
T ss_pred             ECCCCCCHHHHHHHHHH-----------HhccCHHH-hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcC
Confidence            69999999999999972           12332211 1124578999998888888988877665432100     0000


Q ss_pred             HHHHHH--HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          76 WLELNK--TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        76 ~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ......  ...++++.+++.+..++++..||+|||||++||+|++.    +|++++|||||+|||+.++..+.+.+++++
T Consensus        99 ~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~  178 (212)
T cd03274          99 LDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT  178 (212)
T ss_pred             CCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence            000000  12456677888888888999999999999999999974    579999999999999999999999999985


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                       ++.++|++||++  ++..+||++++|..
T Consensus       179 -~~~~~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         179 -KNAQFIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             -CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence             467888889984  57899999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0065|consensus

Probab=99.96  E-value=1.6e-29  Score=234.16  Aligned_cols=195  Identities=35%  Similarity=0.548  Sum_probs=168.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc----c
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR----T   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~----~   74 (197)
                      +||.||||||||++++|....  ...|+|.+||.+.+....++.++|.+|++..+|.|||+|.+.|.++......    .
T Consensus       147 LG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~  226 (1391)
T KOG0065|consen  147 LGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV  226 (1391)
T ss_pred             ecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccccc
Confidence            599999999999999997652  1357999999998765446778999999999999999999999987654311    1


Q ss_pred             cHHH-HHHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          75 TWLE-LNKTITRVMENLGINHRRQVQI-----SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        75 ~~~~-~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .+.+ .....+.+++.+||+..++..+     +..|||||+||++|-+++.+|+++++||+|.|||..+.-++.+.|+++
T Consensus       227 ~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~  306 (1391)
T KOG0065|consen  227 SRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQL  306 (1391)
T ss_pred             cHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHH
Confidence            1111 1125678999999998887765     679999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235         149 ACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA  196 (197)
Q Consensus       149 ~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~  196 (197)
                      ++. +.|.+++.+++..++.+.+|.|++|.+ |.+++.|+.++++++|.
T Consensus       307 a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~~yFe  354 (1391)
T KOG0065|consen  307 AHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVLPYFE  354 (1391)
T ss_pred             HhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHHHHHH
Confidence            865 789999999999999999999999998 99999999999999885

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=5.2e-28  Score=232.52  Aligned_cols=139  Identities=25%  Similarity=0.324  Sum_probs=114.7

Q ss_pred             CCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh---hCCCEEEEe
Q psy4235          52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLL---TEPQILFCD  127 (197)
Q Consensus        52 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~---~~p~llllD  127 (197)
                      .|..+||.|++.+................+++ ++++.+||.+. +++++.+|||||+||++||++|+   .+|++||||
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD  837 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD  837 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence            56678999999886542211111123344556 58899999886 79999999999999999999998   699999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      |||+|||+.+++.++++|++++++|.|||+++|++. .+ ..||++++|.     ++|++++.|+++++..
T Consensus       838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            999999999999999999999888999999999974 55 8999999995     2488999999998764

>KOG0927|consensus

Probab=99.95  E-value=7.8e-29  Score=212.33  Aligned_cols=172  Identities=21%  Similarity=0.308  Sum_probs=137.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecC--CCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ--DFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      |||||||||||||+++|.+. |+.|.|.-.-.        -.+++.-|+  ..+.-..++.|++.-..   ..     ..
T Consensus       422 VGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~-----~~  484 (614)
T KOG0927|consen  422 VGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSH--------NKLPRYNQHLAEQLDLDKSSLEFMMPKF---PD-----EK  484 (614)
T ss_pred             ecCCCCchhhhHHHHhhccc-ccccccccccc--------ccchhhhhhhHhhcCcchhHHHHHHHhc---cc-----cc
Confidence            69999999999999999999 79998863321        224555665  33444567777665321   11     12


Q ss_pred             HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ..+.+..++.++||. +....++++||.|||.||.+|+.++..|.+|+|||||++||..+...+.+.|.++   ..++|+
T Consensus       485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~  561 (614)
T KOG0927|consen  485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVL  561 (614)
T ss_pred             hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceee
Confidence            356788999999998 5678899999999999999999999999999999999999999999999999876   357889


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|||.. .+.++++++++..+++.....|+......
T Consensus       562 vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~~yk~  596 (614)
T KOG0927|consen  562 VSHDFR-LISQVAEEIWVCENGTVTKWDGDIEIYKE  596 (614)
T ss_pred             eechhh-HHHHHHHHhHhhccCceeecCccHHHHHH
Confidence            999975 89999999999998666677787755433

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1.4e-28  Score=198.58  Aligned_cols=171  Identities=18%  Similarity=0.206  Sum_probs=115.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee--CCcc------cccceEEEEe--cCCCC-CCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP--ISRT------VMSRISGYVA--QQDFL-IEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~--~~~~------~~~~~~~~v~--q~~~~-~~~ltv~e~l~~~~~~~   69 (197)
                      +||||||||||+.+|++.+. +..|+++..+..  +...      .....+...+  |++.. ....++.+...   ...
T Consensus        28 ~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~---~~~  103 (247)
T cd03275          28 IGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS---SYR  103 (247)
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce---EEE
Confidence            59999999999999999886 466777654321  1100      0112233333  33221 11111111100   000


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCccc----------------------ccccCCCCCHHHHHHHHHHHHHhhC----CCE
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINHR----------------------RQVQISGLSGGQRKRLALAVQLLTE----PQI  123 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGq~qrv~ia~al~~~----p~l  123 (197)
                      ....   ....+.+.++++.+++...                      .++++.+||+|||||++||++++.+    |++
T Consensus       104 ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~  180 (247)
T cd03275         104 INGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPF  180 (247)
T ss_pred             ECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCE
Confidence            0011   0123456688888887421                      2344589999999999999999875    899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235         124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG  180 (197)
Q Consensus       124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg  180 (197)
                      +||||||++||+..+..+.+.|++++++|.++|++||+.  .+...||++++|...+
T Consensus       181 lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~  235 (247)
T cd03275         181 FVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ  235 (247)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence            999999999999999999999999987789999999994  4578999999998644

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=5.6e-28  Score=189.08  Aligned_cols=153  Identities=17%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC----CcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~----~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+.+|.-... .... ...-|...    ........+.+.+|+..++++              ...    
T Consensus        27 ~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--------------~~~----   86 (198)
T cd03276          27 VGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--------------PLC----   86 (198)
T ss_pred             ECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC--------------cCC----
Confidence            59999999999999974322 1111 01112211    111113457888887766551              000    


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                      ...+..+.++++.   ....++++.+||+|||||++||+|+    +.+|+++||||||++||+..+..+.++|+++..+ 
T Consensus        87 ~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~  163 (198)
T cd03276          87 VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ  163 (198)
T ss_pred             HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC
Confidence            0113456677776   6677889999999999999999999    5899999999999999999999999999998643 


Q ss_pred             -C-CEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         152 -S-RIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       152 -~-~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                       + .+||+++|++. .+.. +|+|.++..
T Consensus       164 ~~~~~iii~th~~~-~i~~-~d~v~~~~~  190 (198)
T cd03276         164 PGRQFIFITPQDIS-GLAS-SDDVKVFRM  190 (198)
T ss_pred             CCcEEEEEECCccc-cccc-ccceeEEEe
Confidence             3 58899999975 5655 499999876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.95  E-value=1.4e-26  Score=214.33  Aligned_cols=127  Identities=25%  Similarity=0.370  Sum_probs=109.4

Q ss_pred             CCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCC
Q psy4235          56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPTT  131 (197)
Q Consensus        56 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPts  131 (197)
                      |||.|++.|+.....         .....+.++.+||.. .+++++.+|||||+||+.||++|+.+|   +++||||||+
T Consensus       792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts  862 (943)
T PRK00349        792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT  862 (943)
T ss_pred             CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            788888888754321         123457899999986 578999999999999999999999999   9999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       132 ~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      |||+..+..+.+.|++++++|.|||+++|++. .+ ..||+++.|.     ++|++++.|+++++..
T Consensus       863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~  927 (943)
T PRK00349        863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK  927 (943)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence            99999999999999999878999999999974 44 6799999993     3599999999998864

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.95  E-value=2.2e-27  Score=200.29  Aligned_cols=157  Identities=21%  Similarity=0.237  Sum_probs=131.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||-||||+.++|+|.++ |++|+    ..       .-.++|=||.-.--...||.+.+.-.......       ..
T Consensus       373 lGpNgiGKTTFvk~LAG~ik-Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-------~s  433 (591)
T COG1245         373 LGPNGIGKTTFVKLLAGVIK-PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG-------SS  433 (591)
T ss_pred             ECCCCcchHHHHHHHhcccc-CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhhhhcc-------cc
Confidence            59999999999999999999 79887    11       13478888875444556999987654332111       11


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t  159 (197)
                      ..-.++++-++|++..++++.+|||||.|||+||.||..++++++||||++-||.+.+..+.+.|+++..+ ++|.+++-
T Consensus       434 ~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVd  513 (591)
T COG1245         434 YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD  513 (591)
T ss_pred             hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence            23457888899999999999999999999999999999999999999999999999999999999999864 78999999


Q ss_pred             cCCcchHHhhcCeEEEEe
Q psy4235         160 HQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~  177 (197)
                      ||.. .+--++||++++.
T Consensus       514 HDi~-~~dyvsDr~ivF~  530 (591)
T COG1245         514 HDIY-MIDYVSDRLIVFE  530 (591)
T ss_pred             ccee-hhhhhhceEEEEe
Confidence            9975 7888899999985

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.2e-28  Score=200.68  Aligned_cols=165  Identities=27%  Similarity=0.336  Sum_probs=134.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +|.||||||||++.++|+++ |++|+|++||++++..   ++|+.++-||-|-.+|+.+-..|+               .
T Consensus       355 iG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~---------------~  418 (546)
T COG4615         355 IGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG---------------K  418 (546)
T ss_pred             ECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc---------------C
Confidence            69999999999999999999 7999999999999764   355667777777777665211111               1


Q ss_pred             HHHHHHHHHHHHcCCcccc---cc--cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhC
Q psy4235          78 ELNKTITRVMENLGINHRR---QV--QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ-LACE  151 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~---~~--~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~  151 (197)
                      ...+.++.+++++.+.+..   +.  .+-.||.|||+|+++..||+-+.+|+++||=.+--||.-++.+++.+-- ++++
T Consensus       419 as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q  498 (546)
T COG4615         419 ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ  498 (546)
T ss_pred             CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence            1246788899998886543   22  2457999999999999999999999999999999999999999887765 5667


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      |+|||.+|||..  .+..+||++.+.+ |++++
T Consensus       499 GKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e  528 (546)
T COG4615         499 GKTIFAISHDDH--YFIHADRLLEMRN-GQLSE  528 (546)
T ss_pred             CCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence            999999999964  5889999999987 77765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.94  E-value=3e-26  Score=201.28  Aligned_cols=158  Identities=28%  Similarity=0.358  Sum_probs=127.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      .||||||||||+|+|+|+-+ .-+|+|.+=        ....+-|+||.|.+... |.+|-+.++.....   .    ..
T Consensus       425 ~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~---~----~d  487 (604)
T COG4178         425 TGESGAGKTSLLRALAGLWP-WGSGRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAPD---F----SD  487 (604)
T ss_pred             ECCCCCCHHHHHHHHhccCc-cCCCceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCCC---C----Ch
Confidence            49999999999999999987 567887542        12346899999998888 99999987643221   1    23


Q ss_pred             HHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          81 KTITRVMENLGINHRRQVQ------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      +.+.++|..+||.+..++.      -..||+|||||+++||.|+++|++++|||.|++||+.+...+++++++-. .+.|
T Consensus       488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~t  566 (604)
T COG4178         488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDAT  566 (604)
T ss_pred             HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCE
Confidence            5677899999987654432      25699999999999999999999999999999999999999999998743 3689


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeC
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|.+.|..  .+..+.++.+-+.+
T Consensus       567 vISV~Hr~--tl~~~h~~~l~l~~  588 (604)
T COG4178         567 VISVGHRP--TLWNFHSRQLELLD  588 (604)
T ss_pred             EEEeccch--hhHHHHhhheeecc
Confidence            99999986  46788787766654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.94  E-value=2.4e-25  Score=205.76  Aligned_cols=126  Identities=24%  Similarity=0.369  Sum_probs=104.7

Q ss_pred             CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCC
Q psy4235          55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLT---EPQILFCDEPT  130 (197)
Q Consensus        55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~---~p~llllDEPt  130 (197)
                      .|||.|.+.|+.....         .....++++.+||.. .+++++.+|||||+||+.||++|+.   +|+++||||||
T Consensus       789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt  859 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT  859 (924)
T ss_pred             CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence            3566666666543221         113457888999986 4789999999999999999999997   59999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHH
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKV  191 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~  191 (197)
                      +|||+..+..+.+.|+++.++|.|+|+++|++. .+ ..||++++|.     ++|++++.|+++++
T Consensus       860 sgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       860 TGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            999999999999999999888999999999974 44 6799999993     35999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=1.4e-25  Score=191.03  Aligned_cols=186  Identities=22%  Similarity=0.301  Sum_probs=157.6

Q ss_pred             CCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC-Cc---ccc-cceEEEEecCC---CCCCCCCHHHHHHHHHHcc----
Q psy4235           2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SR---TVM-SRISGYVAQQD---FLIEELTVLEHLQFMAKLT----   69 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~-~~---~~~-~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~----   69 (197)
                      |-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ ..   ..+ +..++|||++.   .+.+.+|+.||+.+.....    
T Consensus       291 GV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~  369 (501)
T COG3845         291 GVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS  369 (501)
T ss_pred             ecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccc
Confidence            6789999999999999987 5679999999997 22   222 34589999984   5889999999998764321    


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ......+....+.+.++++.+++. .-...++..||||.+||+-+||-|..+|++||+.+||.|||..+.+.|.+.|.+.
T Consensus       370 ~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~  449 (501)
T COG3845         370 RGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL  449 (501)
T ss_pred             cccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence            111244567778889999999997 4466789999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      ++.|+.|+++|.+.+ +++.+||||.+|.+ |+++...++++
T Consensus       450 r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~  489 (501)
T COG3845         450 RDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE  489 (501)
T ss_pred             HhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence            999999999999985 79999999999987 99887666654

>KOG0062|consensus

Probab=99.93  E-value=1.6e-25  Score=191.11  Aligned_cols=169  Identities=25%  Similarity=0.338  Sum_probs=134.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+||+||||++|++.|-.. |.+|.+.+.+        +.+++|.+|...-+..+.|.+. .+....+..  .    .+
T Consensus       396 vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~----~~  459 (582)
T KOG0062|consen  396 VGENGDGKSTLLKILKGDLT-PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--K----TE  459 (582)
T ss_pred             eccCchhHHHHHHHHhccCC-cccceeeecc--------cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--C----CH
Confidence            59999999999999999888 6888876543        4678999998654444444332 222223221  1    34


Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      +.+..-+..|||+ +.+.+.+..||||||-||++|.+...+|-+|+|||||+.||..+...+.+.|+.+   .+.||++|
T Consensus       460 ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VS  536 (582)
T KOG0062|consen  460 EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVS  536 (582)
T ss_pred             HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEE
Confidence            6788899999997 5667778999999999999999999999999999999999999999999999887   35788899


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEE-EEecChhH
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSK  190 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~  190 (197)
                      |+. +++...|+.+|+.++ |++ -.+|...+
T Consensus       537 Hd~-~fi~~~c~E~Wvve~-g~vt~ieg~~~~  566 (582)
T KOG0062|consen  537 HDE-EFISSLCKELWVVED-GKVTPIEGGIDK  566 (582)
T ss_pred             CcH-HHHhhcCceeEEEcC-CcEEeeeccHHH
Confidence            996 689999999999998 555 45565543

>KOG0066|consensus

Probab=99.93  E-value=2.3e-25  Score=187.79  Aligned_cols=167  Identities=28%  Similarity=0.378  Sum_probs=132.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||.||||||++|.|-+. |..|+.+-|        .+-+||+.-|+.  .+-..-|..|++.-.+.+.         
T Consensus       619 VGPNGVGKSTlLkLL~Gkl~-P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp---------  680 (807)
T KOG0066|consen  619 VGPNGVGKSTLLKLLIGKLD-PNDGELRKN--------HRLRIGWFDQHANEALNGEETPVEYLQRKFNLP---------  680 (807)
T ss_pred             ECCCCccHHHHHHHHhcCCC-CCcchhhcc--------ceeeeechhhhhHHhhccccCHHHHHHHhcCCC---------
Confidence            69999999999999999998 688877532        233589998874  4555567878776543321         


Q ss_pred             HHHHHHHHHHHcCCcccccc-cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQV-QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                       .+.+...|-.+||...+++ .+..|||||+-||++|-.-+..|++|||||||++||.++...+.+.|+++   ...||+
T Consensus       681 -yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~  756 (807)
T KOG0066|consen  681 -YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIM  756 (807)
T ss_pred             -hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEE
Confidence             2457788999999866654 78999999999999999999999999999999999999999999999887   357889


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      +|||.. .+.+.-+..+|+.+.|.-...|+.++
T Consensus       757 VsHDeR-Li~eT~C~LwVvE~Q~i~eIdGdFeD  788 (807)
T KOG0066|consen  757 VSHDER-LIVETDCNLWVVENQGIDEIDGDFED  788 (807)
T ss_pred             Eecccc-eeeecCceEEEEccCChhhccccHHH
Confidence            999965 56666667888887665455666654

>KOG0927|consensus

Probab=99.92  E-value=1.3e-25  Score=192.57  Aligned_cols=111  Identities=24%  Similarity=0.380  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          79 LNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        79 ~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      ...++.+++..+|. .+..++.+.+||||+|.|++|||+|..+|++|+|||||++||+.+...+-+.|.++.. . ++++
T Consensus       197 ~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi  274 (614)
T KOG0927|consen  197 FEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVI  274 (614)
T ss_pred             HHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEE
Confidence            34556667777764 5778999999999999999999999999999999999999999999999999987632 2 7888


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++|.. +.+-..|..|+-+.++.-+.|.|+.++..
T Consensus       275 ~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~  308 (614)
T KOG0927|consen  275 VSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV  308 (614)
T ss_pred             Eecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence            88886 58999999999998844478889888654

>KOG0062|consensus

Probab=99.92  E-value=2e-25  Score=190.52  Aligned_cols=171  Identities=26%  Similarity=0.338  Sum_probs=119.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecC-CCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +|+||+|||||||+|+.       |.|...  ++.. ..+  --+++-. ..+...+++.+.+.--..+..     ....
T Consensus       112 vGrNG~GKsTLLRaia~-------~~v~~f--~veq-E~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l  174 (582)
T KOG0062|consen  112 VGRNGIGKSTLLRAIAN-------GQVSGF--HVEQ-EVR--GDDTEALQSVLESDTERLDFLAEEKELLA-----GLTL  174 (582)
T ss_pred             eCCCCCcHHHHHHHHHh-------cCcCcc--Cchh-hee--ccchHHHhhhhhccHHHHHHHHhhhhhhc-----cchH
Confidence            69999999999999974       333222  2211 111  1233322 223333333333322111100     0012


Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .+.+.++|..+|.. +...++.++||||-|.|++|||||..+|+||||||||+.||..+..++.+.|..+   ..|+|+|
T Consensus       175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liV  251 (582)
T KOG0062|consen  175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIV  251 (582)
T ss_pred             HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEE
Confidence            23344489999987 5677889999999999999999999999999999999999999999999999886   3799999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~~  193 (197)
                      |||- .++-..|..|+.+++ -++ .|.|+.+++.+
T Consensus       252 SHDr-~FLn~V~tdIIH~~~-~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  252 SHDR-NFLNTVCTDIIHLEN-LKLDYYKGNYSQFVK  285 (582)
T ss_pred             eccH-HHHHHHHHHHHHHhh-hhhhhhcCcHHHHHH
Confidence            9996 588999999988876 444 57788776644

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=2.5e-25  Score=172.13  Aligned_cols=187  Identities=17%  Similarity=0.250  Sum_probs=141.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeE-----EEECCeeC---Cccccc----ceEEEEecCCC--CCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGE-----ILLNGCPI---SRTVMS----RISGYVAQQDF--LIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~-----i~~~g~~~---~~~~~~----~~~~~v~q~~~--~~~~ltv~e~l~~~~   66 (197)
                      +|.||||||-..|+|+|..+  ++..     .+|++.++   ++...+    +.++++||+|.  +.|.-+|...+.-..
T Consensus        39 VGESGSGKSLiAK~Ic~v~k--dnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I  116 (330)
T COG4170          39 VGESGSGKSLIAKAICGVNK--DNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI  116 (330)
T ss_pred             eccCCCchhHHHHHHhcccc--cceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC
Confidence            69999999999999999876  3444     45666554   222222    34789999976  445444433332211


Q ss_pred             H--ccCC---ccccHHHHHHHHHHHHHHcCCccc---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235          67 K--LTMD---RRTTWLELNKTITRVMENLGINHR---RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA  138 (197)
Q Consensus        67 ~--~~~~---~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~  138 (197)
                      .  .+..   ..+.+  .+.++-++|.++|+.+.   ...+|.+|.-||.|+|.||.|++.+|++||.||||+++++.++
T Consensus       117 P~wTfkgrWWq~F~W--rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq  194 (330)
T COG4170         117 PAWTYKGRWWQRFGW--RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ  194 (330)
T ss_pred             ccccccchHhhhhch--hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence            1  1110   11222  24567789999999754   5679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         139 NNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       139 ~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .+|+++|..+.. ++.+|++++||.. .+.+-||++-||.. |.-++.++.+++++
T Consensus       195 ~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e~l~~  248 (330)
T COG4170         195 AQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSEELVT  248 (330)
T ss_pred             HHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchhHHhc
Confidence            999999999985 4789999999975 78999999999998 76667777777654

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=2.4e-24  Score=170.28  Aligned_cols=83  Identities=20%  Similarity=0.253  Sum_probs=70.0

Q ss_pred             cccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCcchHHh
Q psy4235          95 RRQVQISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S-RIVICAIHQPTSGVFE  168 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~-~~iii~th~~~~~~~~  168 (197)
                      ..+..+.+||+||||++.+++++    +.+|+++|+||||++||+..+..+.+.+++++++ + .++|++|||.. ....
T Consensus       119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~  197 (213)
T cd03277         119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLN  197 (213)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCc
Confidence            45667899999999998877654    5899999999999999999999999999999766 5 47999999975 4567


Q ss_pred             hcC--eEEEEeC
Q psy4235         169 KFD--TVSLLAH  178 (197)
Q Consensus       169 ~~d--~v~~l~~  178 (197)
                      .||  +++++.+
T Consensus       198 ~~~~~~v~~l~~  209 (213)
T cd03277         198 YHEKMTVLCVYN  209 (213)
T ss_pred             ccCceEEEEEec
Confidence            776  6777776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=182.22  Aligned_cols=160  Identities=27%  Similarity=0.341  Sum_probs=119.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--------c----cc------ceEEEEecC----CCCCCCCCH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--------V----MS------RISGYVAQQ----DFLIEELTV   58 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--------~----~~------~~~~~v~q~----~~~~~~ltv   58 (197)
                      +||||-||||-+|+|+|.+. |.=|+-  ++.+-...        .    ++      -++..=+|-    |..+-. +|
T Consensus       106 lG~NGiGKsTalkILaGel~-PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG-~v  181 (591)
T COG1245         106 LGPNGIGKSTALKILAGELK-PNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG-KV  181 (591)
T ss_pred             EcCCCccHHHHHHHHhCccc-cCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc-hH
Confidence            69999999999999999998 565542  22111000        0    00      011222221    222222 44


Q ss_pred             HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235          59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA  138 (197)
Q Consensus        59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~  138 (197)
                      .|-|.-.            ...-..+++++.++|.+.+++.+++|||||.||++||.+++++++++++|||+|-||...+
T Consensus       182 ~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR  249 (591)
T COG1245         182 GELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR  249 (591)
T ss_pred             HHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence            4433211            1123577899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      -...+.++++++.+++||++.||+. .+--++|-|.++.
T Consensus       250 l~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y  287 (591)
T COG1245         250 LNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence            9999999999988999999999974 6667788888775

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.90  E-value=3.7e-23  Score=159.27  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         103 LSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       103 LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      ||+||+||++||++++    .+|+++++|||+++||+..+..+.+.|+++++++.++|++||++.  ....+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence            9999999999999996    699999999999999999999999999998777789999999963  4578999999876

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.90  E-value=4.7e-24  Score=167.11  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235          95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~~~d~v  173 (197)
                      ..+...+.+|+||+|++.+++++ .+|+++++|||++++|+..+..+. ..++.+++.+.++|++||+.  .+..+||++
T Consensus        84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~  160 (200)
T cd03280          84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKR  160 (200)
T ss_pred             hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcC
Confidence            34455678999999999999884 899999999999999999999996 57888877788999999973  578999999


Q ss_pred             EEEeCCcEEEEe
Q psy4235         174 SLLAHGGLLAYH  185 (197)
Q Consensus       174 ~~l~~gg~i~~~  185 (197)
                      +.+++ |.+.++
T Consensus       161 ~~l~~-g~l~~~  171 (200)
T cd03280         161 EGVEN-ASMEFD  171 (200)
T ss_pred             CCeEE-EEEEEe
Confidence            99987 888765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.89  E-value=9e-23  Score=189.11  Aligned_cols=137  Identities=22%  Similarity=0.381  Sum_probs=111.6

Q ss_pred             CCCCCHHHHHHHHHHccCCcc------ccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235          53 IEELTVLEHLQFMAKLTMDRR------TTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI  123 (197)
Q Consensus        53 ~~~ltv~e~l~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l  123 (197)
                      +..+||.|.+.|.........      ....+..+++. +++.+||.+. +++++.+|||||+|||.||++|+.+|  ++
T Consensus       434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l  512 (943)
T PRK00349        434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL  512 (943)
T ss_pred             HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence            456899999998654422110      00112334443 6888899876 79999999999999999999999997  99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235         124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~  193 (197)
                      +||||||+|||+..+.++.++|++++++|.|||+++|++. .+ ..||++++|      .+ |++++.|+++++..
T Consensus       513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~-G~iv~~g~~~e~~~  585 (943)
T PRK00349        513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHG-GEVVASGTPEEIMK  585 (943)
T ss_pred             EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCC-CEEeeccCHHHHhc
Confidence            9999999999999999999999999888999999999975 44 569999999      65 89999999988743

>KOG0060|consensus

Probab=99.89  E-value=1.3e-22  Score=175.46  Aligned_cols=169  Identities=20%  Similarity=0.249  Sum_probs=129.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      .||||||||+|||+++|+.+ ..+|++..-...-     .+.+-|+||.|.+.-+ |.+|.+.|+........  .....
T Consensus       467 tG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~--~~~~d  537 (659)
T KOG0060|consen  467 TGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDS--KSASD  537 (659)
T ss_pred             ECCCCCchhHHHHHHhcccc-cCCCeEEecccCC-----CCceEEecCCCCcccc-chhheeeccCccccccc--cCCCH
Confidence            49999999999999999876 6899986532221     1347899999998777 99999988733211111  11123


Q ss_pred             HHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENLGINHRRQVQ-----------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      +.+.++|+.++|.+...+-           ...||+||+||++.||.+.++|++-||||-||++|......+++.+++. 
T Consensus       538 ~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-  616 (659)
T KOG0060|consen  538 EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-  616 (659)
T ss_pred             HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-
Confidence            4566677776665433321           2569999999999999999999999999999999999999999888775 


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                        |.|.|-++|..  .+.++-|.++-|..+|...
T Consensus       617 --giT~iSVgHRk--SL~kfHd~~L~~~g~g~w~  646 (659)
T KOG0060|consen  617 --GITFISVGHRK--SLWKFHDYVLRMDGRGSWR  646 (659)
T ss_pred             --CCeEEEeccHH--HHHhhhhEEEEecCCCceE
Confidence              88999999986  4788899999998766543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.89  E-value=2.7e-22  Score=185.67  Aligned_cols=136  Identities=24%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             CCCCCHHHHHHHHHHccCCcccc--H----HHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235          53 IEELTVLEHLQFMAKLTMDRRTT--W----LELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI  123 (197)
Q Consensus        53 ~~~ltv~e~l~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l  123 (197)
                      +..|||.|.+.|+..+.......  .    .+...++ +.+..+||... +++++.+|||||+||+.||++|+.+|  ++
T Consensus       432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l  510 (924)
T TIGR00630       432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL  510 (924)
T ss_pred             HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence            34688999888876542111000  0    0111122 34677888765 79999999999999999999999986  89


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHH
Q psy4235         124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVL  192 (197)
Q Consensus       124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~  192 (197)
                      |||||||+|||+..+..+.++|++++++|.|||+++|++. .+ ..||++++|      ++ |++++.|+++++.
T Consensus       511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~-G~Iv~~g~~~el~  582 (924)
T TIGR00630       511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHG-GEVVASGTPEEIL  582 (924)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCC-CEEeeccCHHHHh
Confidence            9999999999999999999999999888999999999974 44 589999999      65 9999999998874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.88  E-value=2e-22  Score=152.96  Aligned_cols=74  Identities=26%  Similarity=0.339  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         103 LSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       103 LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      ||+||+||+++|++|..    +|+++|+|||++|+|+.....+.+.+.++..++.++|++||++.  ....+|+++.|..
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~  155 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK  155 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence            99999999999999987    78999999999999999999999999988665789999999963  4677999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG2355|consensus

Probab=99.88  E-value=3.6e-22  Score=153.91  Aligned_cols=174  Identities=22%  Similarity=0.296  Sum_probs=127.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-c-------------cccceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-T-------------VMSRISGYVAQQDFLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~-------------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~   66 (197)
                      +|.||||||||||+|+|-.- .-.|.|.++|.+.-. .             .|.+.+++.. +-.+...+++.+.| |+.
T Consensus        46 VGaNGaGKtTlLKiLsGKhm-v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV  122 (291)
T KOG2355|consen   46 VGANGAGKTTLLKILSGKHM-VGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGV  122 (291)
T ss_pred             EecCCCchhhhHHHhcCccc-ccCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhc
Confidence            69999999999999999654 345899999977421 0             1222222222 22233355665433 332


Q ss_pred             HccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          67 KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                      ..     ..    .++-+++++.+.++  ...+...+|-|||+||.|++.|++.-++|+|||-|--||...+..+++.++
T Consensus       123 ~g-----~d----p~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk  191 (291)
T KOG2355|consen  123 GG-----DD----PERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK  191 (291)
T ss_pred             cC-----CC----hhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence            11     11    13445666766664  345677899999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         147 QLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       147 ~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      +-+++ |.||+..||..+ -+..-...++.+.. |+++..-+.+.
T Consensus       192 eEce~RgatIVYATHIFD-GLe~Wpthl~yi~~-Gkl~~~l~~~~  234 (291)
T KOG2355|consen  192 EECEQRGATIVYATHIFD-GLETWPTHLVYIKS-GKLVDNLKYQK  234 (291)
T ss_pred             HHHhhcCcEEEEEeeecc-chhhcchhEEEecC-Ceeeeccccch
Confidence            98865 899999999975 68888999999987 88876433333

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=8.7e-22  Score=161.46  Aligned_cols=76  Identities=33%  Similarity=0.395  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         101 SGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ..||+||+||+++|++++.    +|+++|+|||+++||+..+..+.+.|+++.+ +.++|++||++.  +...||+++++
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence            3499999999999997654    9999999999999999999999999999864 689999999963  56899999999


Q ss_pred             eCC
Q psy4235         177 AHG  179 (197)
Q Consensus       177 ~~g  179 (197)
                      .++
T Consensus       246 ~~~  248 (276)
T cd03241         246 EKE  248 (276)
T ss_pred             EEe
Confidence            874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.86  E-value=5.5e-22  Score=155.32  Aligned_cols=123  Identities=19%  Similarity=0.231  Sum_probs=91.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|...      +...|.++...      .+++|...+|+.+|+.||+.+.....      ..+ .
T Consensus        31 tGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l~~~~s~~------~~e-~   91 (199)
T cd03283          31 TGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDDLRDGISYF------YAE-L   91 (199)
T ss_pred             ECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhccccccChH------HHH-H
Confidence            59999999999999988543      12345444321      36677778899999999997753211      112 2


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~t  159 (197)
                      +++.++++.+++                          .+|+++|+|||++|+|+.....+. .+++.+.+.+.++|++|
T Consensus        92 ~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivT  145 (199)
T cd03283          92 RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIST  145 (199)
T ss_pred             HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            557778887763                          799999999999999999998775 47888877788999999


Q ss_pred             cCCcchHHhh
Q psy4235         160 HQPTSGVFEK  169 (197)
Q Consensus       160 h~~~~~~~~~  169 (197)
                      |+.. .+...
T Consensus       146 H~~~-~~~~~  154 (199)
T cd03283         146 HDLE-LADLL  154 (199)
T ss_pred             CcHH-HHHhh
Confidence            9974 44443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.85  E-value=1.4e-20  Score=181.70  Aligned_cols=136  Identities=23%  Similarity=0.401  Sum_probs=106.9

Q ss_pred             CCCCHHHHHHHHHHccCCccccHHHHHHHHH---HHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEe
Q psy4235          54 EELTVLEHLQFMAKLTMDRRTTWLELNKTIT---RVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QILFCD  127 (197)
Q Consensus        54 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~llllD  127 (197)
                      ..|++.|-+.|...+..... .....-..+.   +.|..+||.+. +++.+.+|||||+||+.||+||+.+|  ++||||
T Consensus       425 ~~m~i~~l~~~~~~l~~~~~-~~~~il~ei~~RL~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILD  503 (1809)
T PRK00635        425 QQMSLQELFIFLSQLPSKSL-SIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILD  503 (1809)
T ss_pred             hcCCHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            45778777777654421000 0111111111   24556788876 68999999999999999999999999  899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHH
Q psy4235         128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVL  192 (197)
Q Consensus       128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~  192 (197)
                      |||+|||+..++.+.++|++++++|.|||+++|+..  +.+.||++++|.     .+|++++.|++++++
T Consensus       504 EPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil  571 (1809)
T PRK00635        504 EPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREFL  571 (1809)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence            999999999999999999999888999999999964  679999999996     348999999988774

>KOG0064|consensus

Probab=99.84  E-value=1.9e-21  Score=166.78  Aligned_cols=158  Identities=16%  Similarity=0.294  Sum_probs=113.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC--CccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM--DRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~   78 (197)
                      +||||||||+|+|+|.|+.+ ...|...+        +....+-|+||.|.+--+ |.+|.+-++-....  .+..    
T Consensus       514 tGPNGCGKSSLfRILggLWP-vy~g~L~~--------P~~~~mFYIPQRPYms~g-tlRDQIIYPdS~e~~~~kg~----  579 (728)
T KOG0064|consen  514 TGPNGCGKSSLFRILGGLWP-VYNGLLSI--------PRPNNIFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGY----  579 (728)
T ss_pred             ECCCCccHHHHHHHHhccCc-ccCCeeec--------CCCcceEeccCCCccCcC-cccceeecCCcHHHHHhcCC----
Confidence            59999999999999999876 45554432        123448999999886643 77777765421100  0011    


Q ss_pred             HHHHHHHHHHHcCCcccccccC---------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          79 LNKTITRVMENLGINHRRQVQI---------SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .++....+|..+.|++.+.+-.         ..||||+|||+++||.+.+.|+..+|||-||+..+.....+++..+.. 
T Consensus       580 ~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~-  658 (728)
T KOG0064|consen  580 TDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA-  658 (728)
T ss_pred             CHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc-
Confidence            1234556666666655444433         469999999999999999999999999999999999988888877654 


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                        |.+.|-+||.+.  +.++-..++-.+
T Consensus       659 --gi~llsithrps--lwk~h~~ll~~d  682 (728)
T KOG0064|consen  659 --GISLLSITHRPS--LWKYHTHLLEFD  682 (728)
T ss_pred             --CceEEEeecCcc--HHHHHHHHHhcc
Confidence              889999999984  456655554443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.82  E-value=2.8e-21  Score=151.62  Aligned_cols=86  Identities=14%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       100 ~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+.. +++.+.+.+.++|++||+.  ++...++++..+..
T Consensus        89 ~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~  165 (202)
T cd03243          89 RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKN  165 (202)
T ss_pred             ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEE
Confidence            4556666665 666678889999999999999999998888754 5666766688999999985  45778888888877


Q ss_pred             CcEEEEecChh
Q psy4235         179 GGLLAYHGQVS  189 (197)
Q Consensus       179 gg~i~~~g~~~  189 (197)
                       +.+...++..
T Consensus       166 -~~~~~~~~~~  175 (202)
T cd03243         166 -LHMEELITTG  175 (202)
T ss_pred             -EEEEEEecCC
Confidence             7777666543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.81  E-value=6.5e-19  Score=144.03  Aligned_cols=77  Identities=19%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235         100 ISGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus       100 ~~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      ...+|+||+|+++||++|+         .+|+++++||||++||+..+..+.+.++++.    .+++++|+.. .+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence            4568999999999999985         7999999999999999999999999998753    3556666543 466666


Q ss_pred             ---CeEEEEeCCcEE
Q psy4235         171 ---DTVSLLAHGGLL  182 (197)
Q Consensus       171 ---d~v~~l~~gg~i  182 (197)
                         ++++.+++ |++
T Consensus       256 ~~~~~i~~l~~-g~i  269 (270)
T cd03242         256 LRRAQIFRVDA-GTL  269 (270)
T ss_pred             ccCccEEEEeC-cEE
Confidence               67888876 764

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.81  E-value=2e-20  Score=148.75  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          86 VMENLGINHRRQVQISGLSGGQRKRLALAVQL--LTEPQILFCDEP---TTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        86 ~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al--~~~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      ++..+++.+..   ...+|.|+++++.+++++  +.+|+++|||||   |+++|+......  +++.+.+ .+.++|++|
T Consensus        76 il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisT  150 (222)
T cd03285          76 ILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFAT  150 (222)
T ss_pred             eEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEe
Confidence            44455554332   578999999999999999  899999999999   899999887543  3344443 478999999


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g  186 (197)
                      |.  .++..+||++..+.+ |++...+
T Consensus       151 H~--~el~~~~~~~~~i~~-g~~~~~~  174 (222)
T cd03285         151 HF--HELTALADEVPNVKN-LHVTALT  174 (222)
T ss_pred             ch--HHHHHHhhcCCCeEE-EEEEEEE
Confidence            96  367899999998887 7776544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.79  E-value=4.4e-19  Score=148.95  Aligned_cols=160  Identities=29%  Similarity=0.348  Sum_probs=122.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-------CCceeEEEECCeeCCcccccceEEEEecC-CCCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-------GLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +|+|||||||||++|+|...       .|++|.|.+--..        ..+.+|-. ..-|..-|+.|.+.--  .    
T Consensus       415 vGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~--t----  480 (593)
T COG2401         415 VGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK--T----  480 (593)
T ss_pred             EecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc--c----
Confidence            59999999999999998642       1688888653211        22455543 2224455777765421  1    


Q ss_pred             cccHHHHHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          73 RTTWLELNKTITRVMENLGINH--RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      .     +...+-++|++.|+.+  ...+++++||-|||.|+.||+++...|.+++.||-.|.||+.+...+.+-|.+++.
T Consensus       481 G-----D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR  555 (593)
T COG2401         481 G-----DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR  555 (593)
T ss_pred             C-----chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            1     1234668999999974  34678899999999999999999999999999999999999999999999999986


Q ss_pred             C-CCEEEEEecCCcchHHhh-cCeEEEEeCCc
Q psy4235         151 E-SRIVICAIHQPTSGVFEK-FDTVSLLAHGG  180 (197)
Q Consensus       151 ~-~~~iii~th~~~~~~~~~-~d~v~~l~~gg  180 (197)
                      + |.|++++||+++ ....+ -|.++.+..|+
T Consensus       556 e~giTlivvThrpE-v~~AL~PD~li~vgYg~  586 (593)
T COG2401         556 EAGITLIVVTHRPE-VGNALRPDTLILVGYGK  586 (593)
T ss_pred             HhCCeEEEEecCHH-HHhccCCceeEEeeccc
Confidence            5 899999999974 66666 78888887733

>KOG0063|consensus

Probab=99.79  E-value=3.7e-19  Score=149.76  Aligned_cols=158  Identities=26%  Similarity=0.284  Sum_probs=124.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +|.||.|||||+++++|.++ |+.| +|-.           -.++|=||...-=..-||++.+.--.+..       -..
T Consensus       373 lgEngtgkTTfi~mlag~~~-pd~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kIr~a-------y~~  433 (592)
T KOG0063|consen  373 LGENGTGKTTFIRMLAGRLK-PDEGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKIRDA-------YMH  433 (592)
T ss_pred             EccCCcchhHHHHHHhcCCC-CCccCcccc-----------cceeccccccCccccchHHHHHHHHhHhh-------hcC
Confidence            69999999999999999988 5654 3311           23677777644333348887665322211       122


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~iii~  158 (197)
                      .+-+.++++-+.+++..++.+.+||||++||+++|.+|-..+++++.|||.+-||.+.+...-..++++- +..+|-.++
T Consensus       434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV  513 (592)
T KOG0063|consen  434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV  513 (592)
T ss_pred             HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence            3567888999999999999999999999999999999999999999999999999999988888888864 447899999


Q ss_pred             ecCCcchHHhhcCeEEEEeC
Q psy4235         159 IHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~  178 (197)
                      .||.. .+.-.+||+++...
T Consensus       514 EhdfI-maTYladrvivf~G  532 (592)
T KOG0063|consen  514 EHDFI-MATYLADRVIVFEG  532 (592)
T ss_pred             hhHHH-HHHhhcceeEEEec
Confidence            99964 56678999998863

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.78  E-value=4.5e-19  Score=144.53  Aligned_cols=136  Identities=24%  Similarity=0.287  Sum_probs=93.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|.++ +++|+|.++|+++..    ......+++++|.. +.+.++|.+|..-            
T Consensus       117 ~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------------  182 (270)
T TIGR02858       117 ISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------------  182 (270)
T ss_pred             EcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------------
Confidence            59999999999999999998 799999999999852    22334567888854 4455666554110            


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                            ..                     |+   ..+  +...+|+++++|||++      .+.+..+++.+. .|.++|
T Consensus       183 ------~~---------------------~~---~~~--i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI  223 (270)
T TIGR02858       183 ------AE---------------------GM---MML--IRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSII  223 (270)
T ss_pred             ------HH---------------------HH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEE
Confidence                  00                     11   222  3336999999999974      344555555554 689999


Q ss_pred             EEecCCcch-H-----------HhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         157 CAIHQPTSG-V-----------FEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       157 i~th~~~~~-~-----------~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      +++|+.... +           ..++||+++|++ ++  ..|++++++
T Consensus       224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~-~~--~~g~~~~i~  268 (270)
T TIGR02858       224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR-RK--GPGTVEAVY  268 (270)
T ss_pred             EEechhHHHHHHhChHHHHHHhcCceEEEEEEec-CC--CCCceeecc
Confidence            999975321 2           266899999986 44  456665543

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0066|consensus

Probab=99.77  E-value=5.6e-20  Score=155.40  Aligned_cols=183  Identities=23%  Similarity=0.288  Sum_probs=123.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc--CCCc------eeEEEECCeeC-Cc--ccccceEEEEecCCC-----CCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRV--KGLV------QGEILLNGCPI-SR--TVMSRISGYVAQQDF-----LIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~--~~~~------~G~i~~~g~~~-~~--~~~~~~~~~v~q~~~-----~~~~ltv~e~l~~   64 (197)
                      +||||-||||||+.|+..-  -||.      .-+|..+..+. ..  ..-.++..++-....     --...|+.|-+.-
T Consensus       296 VGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~  375 (807)
T KOG0066|consen  296 VGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKE  375 (807)
T ss_pred             cCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            6999999999999998642  1121      22233222221 00  000111111111110     1123466665543


Q ss_pred             HHH-ccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235          65 MAK-LTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV  142 (197)
Q Consensus        65 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~  142 (197)
                      .+. +...   .....+.++..+|.-+|.+ +..+++...+|||-|.||++||||..+|-+|+|||||+.||.....++-
T Consensus       376 v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLd  452 (807)
T KOG0066|consen  376 VADELRAI---GADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLD  452 (807)
T ss_pred             HHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehh
Confidence            221 1110   1112346788899999997 5678888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHH
Q psy4235         143 NLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKV  191 (197)
Q Consensus       143 ~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~  191 (197)
                      +.|..++   +|.+|++||. .++-..|..|+.+++ .++ .|.|...-+
T Consensus       453 NYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~-qkLhyYrGNY~~F  497 (807)
T KOG0066|consen  453 NYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDN-QKLHYYRGNYTLF  497 (807)
T ss_pred             hHHhhhh---heeEEEeccc-chHHHHHHHHhhhhh-hhhhhhcchHHHH
Confidence            9999885   5899999997 589999999999987 444 456665433

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.76  E-value=1.9e-19  Score=139.43  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             cCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCcchHH
Q psy4235          90 LGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACE-SRIVICAIHQPTSGVF  167 (197)
Q Consensus        90 ~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~-~~~iii~th~~~~~~~  167 (197)
                      ++..+..++..+++|+|++|...+.+. +.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+.  ++.
T Consensus        49 ~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~  125 (185)
T smart00534       49 IGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELT  125 (185)
T ss_pred             eCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHH
Confidence            344455566778899988874333332 3499999999999999999887764 566777664 78999999986  467


Q ss_pred             hhcCe
Q psy4235         168 EKFDT  172 (197)
Q Consensus       168 ~~~d~  172 (197)
                      ..+|.
T Consensus       126 ~~~~~  130 (185)
T smart00534      126 KLADE  130 (185)
T ss_pred             HHhhc
Confidence            78874

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.76  E-value=1.5e-17  Score=148.87  Aligned_cols=128  Identities=27%  Similarity=0.374  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235          55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT  130 (197)
Q Consensus        55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt  130 (197)
                      .|||.|...|+....         .-.+.-+.|..+||... +.++..+|||||.||+-||.-|....   -++||||||
T Consensus       783 ~MTveEA~~FF~~~p---------~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT  853 (935)
T COG0178         783 DMTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT  853 (935)
T ss_pred             hccHHHHHHHHhcch---------HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence            467777777765321         12334466778899864 68899999999999999999999877   999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      +||-+...+++++.|.++...|.|||++.|.+  ++.+.||.|+-|-     +||.|++.|+|+++.+
T Consensus       854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            99999999999999999999999999999986  4789999998873     4689999999999875

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.74  E-value=2.8e-18  Score=134.82  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=85.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||+|||||+|+|++..-                  +.+.-.|+   |..+..+++.|++..                
T Consensus        35 ~G~n~~GKstll~~i~~~~~------------------la~~G~~v---pa~~~~l~~~d~I~~----------------   77 (204)
T cd03282          35 TGPNMSGKSTYLKQIALLAI------------------MAQIGCFV---PAEYATLPIFNRLLS----------------   77 (204)
T ss_pred             ECCCCCCHHHHHHHHHHHHH------------------HHHcCCCc---chhhcCccChhheeE----------------
Confidence            59999999999999987631                  11111233   333444556565532                


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~iii~t  159 (197)
                              .++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+.+.+.++|++|
T Consensus        78 --------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~T  148 (204)
T cd03282          78 --------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFAT  148 (204)
T ss_pred             --------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence                    2233334556678899999975 555668899999999999999999876665 456777777789999999


Q ss_pred             cCCcchHHhhc
Q psy4235         160 HQPTSGVFEKF  170 (197)
Q Consensus       160 h~~~~~~~~~~  170 (197)
                      |+.. .+...+
T Consensus       149 H~~~-l~~~~~  158 (204)
T cd03282         149 HFRD-IAAILG  158 (204)
T ss_pred             ChHH-HHHHhh
Confidence            9863 444333

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.70  E-value=2e-17  Score=131.09  Aligned_cols=138  Identities=18%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|++..-.   |.   .|..+..  ....++|+.|   +|+.+++.+++..+.              
T Consensus        36 ~Gpn~sGKstllr~i~~~~~l---~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ls~g~--------------   90 (216)
T cd03284          36 TGPNMAGKSTYLRQVALIALL---AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDDLAGGR--------------   90 (216)
T ss_pred             ECCCCCChHHHHHHHHHHHHH---hc---cCCeecc--ccceecceee---EeccCCchhhhccCc--------------
Confidence            599999999999999865321   11   1222221  1244677754   567778877765421              


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ--LLTEPQILFCDEP---TTGLDSYSANNVVNLLKQLACE-SRI  154 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a--l~~~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~~-~~~  154 (197)
                                             |.=...+..++++  .+.+|+++|||||   |+++|....  ...+++.+.+. +.+
T Consensus        91 -----------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~  145 (216)
T cd03284          91 -----------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAK  145 (216)
T ss_pred             -----------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCc
Confidence                                   1111222223333  3579999999999   888887552  33445555555 789


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +|++||+.  ++..++|++..+.+ +.+...++.+++
T Consensus       146 vi~~TH~~--~l~~l~~~~~~v~~-~~~~~~~~~~~l  179 (216)
T cd03284         146 TLFATHYH--ELTELEGKLPRVKN-FHVAVKEKGGGV  179 (216)
T ss_pred             EEEEeCcH--HHHHHhhcCCCeEE-EEEEEEeeCCeE
Confidence            99999985  56788888766665 666655554443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR00618 sbcc exonuclease SbcC

Probab=99.65  E-value=5.7e-16  Score=147.00  Aligned_cols=85  Identities=20%  Similarity=0.161  Sum_probs=77.8

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235          93 NHRRQVQISGLSGGQRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus        93 ~~~~~~~~~~LSgGq~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      ....++++.+|||||++|++||+||+.          +|++||+||||++||+.+...+++.|+.++..|++|+|+||++
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            445667899999999999999999986          7999999999999999999999999999987789999999997


Q ss_pred             cchHHhhcCeEEEEeC
Q psy4235         163 TSGVFEKFDTVSLLAH  178 (197)
Q Consensus       163 ~~~~~~~~d~v~~l~~  178 (197)
                       +....++|+|.|++.
T Consensus      1021 -~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618      1021 -EFRERIPHRILVKKT 1035 (1042)
T ss_pred             -HHHHhhCCEEEEEEC
Confidence             478999999999975

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.64  E-value=7.1e-17  Score=127.91  Aligned_cols=89  Identities=29%  Similarity=0.457  Sum_probs=65.6

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      +.+.+.+..+.+...      .||||||.+++||.-|+    ..++++|||||.++||...+..+.++|+++.++ .-+|
T Consensus       121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~i  193 (220)
T PF02463_consen  121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFI  193 (220)
T ss_dssp             HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEE
T ss_pred             ccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            445566666655432      89999999999997664    578999999999999999999999999998654 6788


Q ss_pred             EEecCCcchHHhhcCeEEEEeC
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~~  178 (197)
                      ++||+.  ..+..+|+.+.+..
T Consensus       194 i~Th~~--~~~~~a~~~~~v~~  213 (220)
T PF02463_consen  194 ITTHNP--EMFEDADKLIGVTM  213 (220)
T ss_dssp             EE-S-H--HHHTT-SEEEEEEE
T ss_pred             cccccc--cccccccccccccc
Confidence            999984  57899998766543

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.63  E-value=9.1e-16  Score=137.00  Aligned_cols=79  Identities=23%  Similarity=0.359  Sum_probs=69.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchH
Q psy4235          98 VQISGLSGGQRKRLALAVQLL----------TEPQILFCDEPT-TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV  166 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~  166 (197)
                      .++..|||||+||++||+||+          .+|+++|||||| ++||+.....+.+.|+++  .+.++|++||++.  .
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~  539 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--D  539 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--c
Confidence            367899999999999999987          599999999998 789999999999999998  5789999999963  4


Q ss_pred             HhhcCeEEEEeCCc
Q psy4235         167 FEKFDTVSLLAHGG  180 (197)
Q Consensus       167 ~~~~d~v~~l~~gg  180 (197)
                      ...||++++|.+.|
T Consensus       540 ~~~~d~~~~l~~~~  553 (562)
T PHA02562        540 PQKFDRHLKMEKVG  553 (562)
T ss_pred             hhhhhcEEEEEEEC
Confidence            67899999998633

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.62  E-value=2e-15  Score=119.47  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy4235         107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE---SRIVICAIHQPT  163 (197)
Q Consensus       107 q~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~---~~~iii~th~~~  163 (197)
                      +.||++++++++.+|+++|+|||++|+|+.....+ ..+++.+.+.   +.++|++||+..
T Consensus        95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281          95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            45899999999999999999999999999765554 5688888654   248999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=9.1e-16  Score=121.14  Aligned_cols=45  Identities=22%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy4235         106 GQRKRLALAVQLLTEPQILFCDEPT-----TGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus       106 Gq~qrv~ia~al~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~~  150 (197)
                      -|++++.||++++.+|+++++||||     ++||+..++.+.+.+++++.
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            3899999999999999999999999     99999999999999999864

>TIGR01069 mutS2 MutS2 family protein

Probab=99.62  E-value=3.6e-16  Score=143.51  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=56.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy4235          98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~iii~th~~~  163 (197)
                      ...+++|+||++++.|++++ .+|.++|+|||++|+||.....+ ..++..+.+.+.++|++||+..
T Consensus       381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            34677999999999998876 79999999999999999999998 5778888777889999999863

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.61  E-value=1.3e-14  Score=130.34  Aligned_cols=139  Identities=22%  Similarity=0.383  Sum_probs=108.0

Q ss_pred             CCCCCHHHHHHHHHHccCCccccHHHHHHHHHH------HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhC--CCE
Q psy4235          53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITR------VMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTE--PQI  123 (197)
Q Consensus        53 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~--p~l  123 (197)
                      +..|++.+.+.|+..+..... ...-.+..+.+      .|-.+||... +++...+|||||.||+.||..+-.+  --+
T Consensus       426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl  504 (935)
T COG0178         426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL  504 (935)
T ss_pred             HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence            345788888888766542211 10111122222      3444688765 6889999999999999999988654  468


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHhh
Q psy4235         124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~~  194 (197)
                      ++||||+.||-+...+++++.|++++..|.|+|+|.||.  +....||+++-|-     +||.|++.|+++++++.
T Consensus       505 YVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~  578 (935)
T COG0178         505 YVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN  578 (935)
T ss_pred             EEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence            999999999999999999999999999999999999985  5789999998873     46999999999998764

>KOG0063|consensus

Probab=99.61  E-value=2.1e-15  Score=127.31  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      ....++++.+.|+..+++-+..||||+.||.+||++.++++++.++|||.+.||...+..-...|+.+.....-||++.|
T Consensus       192 ~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH  271 (592)
T KOG0063|consen  192 DNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH  271 (592)
T ss_pred             ccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence            34567888888888999999999999999999999999999999999999999999999999999999887889999999


Q ss_pred             CCcchHHhhcCeEEEEe
Q psy4235         161 QPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~  177 (197)
                      |.. .+--..|-+.++.
T Consensus       272 DLs-VLDylSDFiCcLY  287 (592)
T KOG0063|consen  272 DLS-VLDYLSDFICCLY  287 (592)
T ss_pred             ech-HHHhhhcceeEEe
Confidence            974 5666678777774

>TIGR00634 recN DNA repair protein RecN

Probab=99.60  E-value=3e-15  Score=133.82  Aligned_cols=75  Identities=27%  Similarity=0.383  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         101 SGLSGGQRKRLALAVQLLTE----PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ..|||||+||++||++++..    |++||||||++|||+.....+.+.|+++++ +.+||++||++.  +...||+++++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence            36899999999999999985    699999999999999999999999999974 789999999973  45789999999


Q ss_pred             eC
Q psy4235         177 AH  178 (197)
Q Consensus       177 ~~  178 (197)
                      .+
T Consensus       516 ~k  517 (563)
T TIGR00634       516 EK  517 (563)
T ss_pred             EE
Confidence            86

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10869 recombination and repair protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=129.16  Aligned_cols=74  Identities=35%  Similarity=0.451  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         102 GLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       102 ~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      .+||||+||++||++++.    +|+++|+|||++|||+.+...+.+.|+++++ +.+||++||++.  +..+||+++.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence            479999999999999997    6899999999999999999999999999964 689999999973  568999999998


Q ss_pred             C
Q psy4235         178 H  178 (197)
Q Consensus       178 ~  178 (197)
                      +
T Consensus       507 k  507 (553)
T PRK10869        507 K  507 (553)
T ss_pred             c
Confidence            6

>PRK03918 chromosome segregation protein; Provisional

Probab=99.55  E-value=1.8e-14  Score=134.80  Aligned_cols=80  Identities=29%  Similarity=0.357  Sum_probs=69.9

Q ss_pred             cccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235          97 QVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus        97 ~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      +.++..|||||+|      |++||++++.+|+++|+||||++||+..+..+.++|..+...+.++|++||++  .+...|
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~  860 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAA  860 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhC
Confidence            4567899999999      45556678899999999999999999999999999999876678999999996  357889


Q ss_pred             CeEEEEeC
Q psy4235         171 DTVSLLAH  178 (197)
Q Consensus       171 d~v~~l~~  178 (197)
                      |++++|..
T Consensus       861 d~~~~l~~  868 (880)
T PRK03918        861 DYVIRVSL  868 (880)
T ss_pred             CeEEEEEe
Confidence            99999984

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.54  E-value=3.3e-15  Score=137.45  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235          95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~~~d~v  173 (197)
                      ...+.++++|+||+|++.|++++ .+|.++|+|||++|+||.....+. .++..+.+.+.++|++||+.. .....+++.
T Consensus       383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~  460 (782)
T PRK00409        383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNRE  460 (782)
T ss_pred             chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCC
Confidence            34456788999999999999988 899999999999999999998885 467777777889999999953 444555555


Q ss_pred             EEE
Q psy4235         174 SLL  176 (197)
Q Consensus       174 ~~l  176 (197)
                      .+.
T Consensus       461 ~v~  463 (782)
T PRK00409        461 GVE  463 (782)
T ss_pred             CeE
Confidence            444

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.53  E-value=4.1e-14  Score=134.22  Aligned_cols=82  Identities=21%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH
Q psy4235          96 RQVQISGLSGGQRKRLALAVQLLT--------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVF  167 (197)
Q Consensus        96 ~~~~~~~LSgGq~qrv~ia~al~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~  167 (197)
                      .++++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..++..|.+|+|+||.. ....
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~ 1021 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKE 1021 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHH
Confidence            457899999999999999999996        8999999999999999999999999999988899999999975 4566


Q ss_pred             hhcCeEEEEeC
Q psy4235         168 EKFDTVSLLAH  178 (197)
Q Consensus       168 ~~~d~v~~l~~  178 (197)
                      .+..++.|-..
T Consensus      1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246       1022 RIPVQIKVKKI 1032 (1047)
T ss_pred             hccceEEEEEC
Confidence            66677777654

>PRK01156 chromosome segregation protein; Provisional

Probab=99.52  E-value=1.1e-13  Score=129.77  Aligned_cols=82  Identities=27%  Similarity=0.334  Sum_probs=69.1

Q ss_pred             ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC--CEEEEEecCCcchHHh
Q psy4235          98 VQISGLSGGQRKRLAL------AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES--RIVICAIHQPTSGVFE  168 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~i------a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~--~~iii~th~~~~~~~~  168 (197)
                      .++..|||||++|++|      |++++.+|++++|||||++||+..+..+.++++.... .+  .++|++||+..  ...
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~  874 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS  874 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence            4688999999999975      4899999999999999999999999999999986543 33  48999999973  457


Q ss_pred             hcCeEEEEeC-CcE
Q psy4235         169 KFDTVSLLAH-GGL  181 (197)
Q Consensus       169 ~~d~v~~l~~-gg~  181 (197)
                      .||+++.+.. ||.
T Consensus       875 ~~d~ii~~~~~~~~  888 (895)
T PRK01156        875 VADVAYEVKKSSGS  888 (895)
T ss_pred             hcCeEEEEEecCCe
Confidence            9999999983 453

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.50  E-value=2.9e-13  Score=104.23  Aligned_cols=89  Identities=13%  Similarity=-0.044  Sum_probs=72.6

Q ss_pred             cCCcccccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          90 LGINHRRQVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLD---SYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        90 ~~l~~~~~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      .+.....+..+..+|+|++|      ......+...+|+++++|||++.+|   ...+..+.++++.+++.|.++|+++|
T Consensus        59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~  138 (187)
T cd01124          59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE  138 (187)
T ss_pred             cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            45555667888999999998      5555555678999999999999999   88888889999998888999999999


Q ss_pred             CCcc--------hHHhhcCeEEEEeC
Q psy4235         161 QPTS--------GVFEKFDTVSLLAH  178 (197)
Q Consensus       161 ~~~~--------~~~~~~d~v~~l~~  178 (197)
                      +...        .+..+||.++.|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         139 QSGLEGTGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             cccCCCcccCcCceeEeeeEEEEEEE
Confidence            7642        16788999998874

A related protein is found in archaea.

>TIGR00606 rad50 rad50

Probab=99.50  E-value=7.6e-14  Score=135.14  Aligned_cols=72  Identities=26%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCcchH
Q psy4235          98 VQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQPTSGV  166 (197)
Q Consensus        98 ~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~~~~~  166 (197)
                      ..++.||+||||      |++||+|++.+|++|+|||||++||+.+...+.+.|..+..     .|.++|++||++. ++
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~ 1273 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FV 1273 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HH
Confidence            345789999999      99999999999999999999999999999999999988732     3789999999974 67


Q ss_pred             Hhhc
Q psy4235         167 FEKF  170 (197)
Q Consensus       167 ~~~~  170 (197)
                      ..+|
T Consensus      1274 ~~~~ 1277 (1311)
T TIGR00606      1274 ELLG 1277 (1311)
T ss_pred             HHHh
Confidence            7664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.48  E-value=7.1e-14  Score=110.59  Aligned_cols=64  Identities=34%  Similarity=0.526  Sum_probs=53.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235          99 QISGLSGGQRKRLALAVQLLTEP---QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus        99 ~~~~LSgGq~qrv~ia~al~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      +...+|.|++|.+.++.++...+   .++++|||-++|+|..+..+.++|++....+.-+|++||.+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp  299 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP  299 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence            34667999999999998888776   89999999999999999999999988876578899999986

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.46  E-value=2.7e-12  Score=98.09  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235          98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      +.....|.||-=---+.+.+ ++.-++|||||-++|.|.-+..++..|+++++.|.-+||+||.+. ...---.+|+-+.
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi-LlAiP~A~I~~~~  202 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI-LLAIPGAEIYEIS  202 (233)
T ss_pred             cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh-heeCCCcEEEEEe
Confidence            34556899997655555554 467899999999999999999999999999999999999999985 3444456788888


Q ss_pred             CCc
Q psy4235         178 HGG  180 (197)
Q Consensus       178 ~gg  180 (197)
                      .+|
T Consensus       203 ~~g  205 (233)
T COG3910         203 ESG  205 (233)
T ss_pred             cCC
Confidence            755

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.45  E-value=1.5e-13  Score=131.25  Aligned_cols=79  Identities=25%  Similarity=0.313  Sum_probs=68.9

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235          96 RQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus        96 ~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d  171 (197)
                      .+.++..|||||+||++||++++    .+|+++||||||++||+..+..+.++|+.+++ +.++|++||++.  ....||
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d 1159 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVAD 1159 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhh
Confidence            45678899999999999999984    67799999999999999999999999999865 478999999974  457899


Q ss_pred             eEEEEe
Q psy4235         172 TVSLLA  177 (197)
Q Consensus       172 ~v~~l~  177 (197)
                      +++.+.
T Consensus      1160 ~~~~~~ 1165 (1179)
T TIGR02168      1160 QLYGVT 1165 (1179)
T ss_pred             hHeeee
Confidence            987654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK13695 putative NTPase; Provisional

Probab=99.44  E-value=4.1e-14  Score=108.34  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235          97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEP--TTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP--ts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      .+....+|++++-+..+++..+.+|+++++|||  +.++|+.    +.+.+.++.+.+.++|+++|+.  .+..++|++.
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~  146 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIK  146 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch--hhHHHHHHHh
Confidence            345567999999999999999999999999994  4455544    4555555555688999999973  4678899999


Q ss_pred             EEeCCcEEEE
Q psy4235         175 LLAHGGLLAY  184 (197)
Q Consensus       175 ~l~~gg~i~~  184 (197)
                      .+.+ |++..
T Consensus       147 ~~~~-~~i~~  155 (174)
T PRK13695        147 SRPG-GRVYE  155 (174)
T ss_pred             ccCC-cEEEE
Confidence            9987 77754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.38  E-value=2.2e-12  Score=96.20  Aligned_cols=62  Identities=16%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         102 GLSGGQRKRLALAVQLLTEPQILFCDEPTT----------GLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       102 ~LSgGq~qrv~ia~al~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      ..+..+.++...+++...+|+++++|||++          +.|....+.+.+++...++.+.++++++|...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence            345556667888999999999999999995          44555556666666666556889999999764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.38  E-value=1.3e-12  Score=125.16  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235          98 VQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v  173 (197)
                      +++..||||||++++||++++.    +|+++|||||+++||+..+..+.++|++++. +..+|++||+..  ....||++
T Consensus      1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169      1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred             CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhccee
Confidence            4567899999999999999985    7899999999999999999999999999865 467999999963  56899999


Q ss_pred             EEEeC
Q psy4235         174 SLLAH  178 (197)
Q Consensus       174 ~~l~~  178 (197)
                      +.+..
T Consensus      1147 ~~~~~ 1151 (1164)
T TIGR02169      1147 IGVTM 1151 (1164)
T ss_pred             EeEEE
Confidence            87764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.37  E-value=9.1e-12  Score=99.64  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCCcc-------hH
Q psy4235         102 GLSGGQRKRLALAVQLL----TEPQILFCDEPTTGL----DSYSANNVVNLLKQLACESRIVICAIHQPTS-------GV  166 (197)
Q Consensus       102 ~LSgGq~qrv~ia~al~----~~p~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~iii~th~~~~-------~~  166 (197)
                      .+|+++.++..+.+.+-    .+|+++++||||+++    |+...+.+.+.++.++++|.++++ ||+...       .+
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~  173 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTIL  173 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeE
Confidence            36666655555544433    369999999999999    888888999999999877776655 555321       12


Q ss_pred             HhhcCeEEEEe
Q psy4235         167 FEKFDTVSLLA  177 (197)
Q Consensus       167 ~~~~d~v~~l~  177 (197)
                      ..+||-++.|.
T Consensus       174 ~~~~DgvI~L~  184 (230)
T PRK08533        174 RTAATMLIRLE  184 (230)
T ss_pred             EEeeeEEEEEE
Confidence            44567777665

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.36  E-value=2.5e-12  Score=103.82  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             CCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235         100 ISGLSGGQ--------RKRLALAVQLLTEPQILFCDEPTTGLDSYSANN-VVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus       100 ~~~LSgGq--------~qrv~ia~al~~~p~llllDEPts~LD~~~~~~-i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      ...+|||+        +||+++||++..+++|.+|  ||+.+|+.+... +.  +.+++..+.+.|+.+|...  ....+
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~  200 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIF  200 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCC
Confidence            45579999        9999999999999999999  999999655443 44  5566556789999999974  47889


Q ss_pred             CeEEEEeCCcEE
Q psy4235         171 DTVSLLAHGGLL  182 (197)
Q Consensus       171 d~v~~l~~gg~i  182 (197)
                      |.|.+|.. |.+
T Consensus       201 paI~vl~s-~sr  211 (249)
T cd01128         201 PAIDILKS-GTR  211 (249)
T ss_pred             CeEEEcCC-CCc
Confidence            99999998 554

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.34  E-value=1.2e-11  Score=114.80  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH---------hhcCeEEEEeCCcEEEEec
Q psy4235         118 LTEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRIVICAIHQPTSGVF---------EKFDTVSLLAHGGLLAYHG  186 (197)
Q Consensus       118 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~---------~~~d~v~~l~~gg~i~~~g  186 (197)
                      ..+|+++++|||+.+| |+..++.+.+.++.+++.+.+++++||++. .+.         +.|+.+++|.+ +.+...+
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~  726 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPN-GAAREPG  726 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCC-ccccccc
Confidence            5799999999999999 799999999999999988999999999975 443         57999999977 7765444

>PRK02224 chromosome segregation protein; Provisional

Probab=99.32  E-value=4.9e-12  Score=118.55  Aligned_cols=78  Identities=27%  Similarity=0.322  Sum_probs=67.1

Q ss_pred             cCCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCcch
Q psy4235          99 QISGLSGGQRK------RLALAVQLLTE-----P-QILFCDEPTTGLDSYSANNVVNLLKQLACESR-IVICAIHQPTSG  165 (197)
Q Consensus        99 ~~~~LSgGq~q------rv~ia~al~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~-~iii~th~~~~~  165 (197)
                      .+..||||||+      |++++++++.+     | +++|+||||++||+..+..+.++|+.+...|. +||++||++. .
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-~  856 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-L  856 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH-H
Confidence            46799999999      89999998864     2 67999999999999999999999999876554 7999999974 4


Q ss_pred             HHhhcCeEEEEeC
Q psy4235         166 VFEKFDTVSLLAH  178 (197)
Q Consensus       166 ~~~~~d~v~~l~~  178 (197)
                       ...||+++.+..
T Consensus       857 -~~~ad~~~~~~~  868 (880)
T PRK02224        857 -VGAADDLVRVEK  868 (880)
T ss_pred             -HHhcCeeEEeec
Confidence             467999999974

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.32  E-value=1.2e-11  Score=98.34  Aligned_cols=46  Identities=22%  Similarity=0.277  Sum_probs=37.8

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q psy4235         118 LTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICAIHQPT  163 (197)
Q Consensus       118 ~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~th~~~  163 (197)
                      +.+|.++|+|||.+|.|+.....+ ..+++.+.+. +.++|++||+..
T Consensus       108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287         108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            458999999999999997777764 5677777765 789999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.31  E-value=1.2e-10  Score=100.97  Aligned_cols=158  Identities=19%  Similarity=0.201  Sum_probs=93.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC---Cc--------ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SR--------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~---~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      +|+||+|||||+++|+|..+ ++.|.|.+.|+.-   ..        ..+++.+.++.+.+..     +.+-+.-..   
T Consensus       164 ~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~-----~~~r~~~~~---  234 (438)
T PRK07721        164 FAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP-----ALMRIKGAY---  234 (438)
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC-----HHHHHHHHH---
Confidence            59999999999999999988 6999999965443   21        1245678888764331     111111000   


Q ss_pred             CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCH-HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSG-GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg-Gq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                               .--.+.+.+..-|-+-..  -..+++. -|-+| .|+. ++.+|+      .|+|+||.....+.+++.++
T Consensus       235 ---------~a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eisl-~~ge~P------~~~G~dp~~~~~l~~ller~  295 (438)
T PRK07721        235 ---------TATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIGL-AVGEPP------TTKGYTPSVFAILPKLLERT  295 (438)
T ss_pred             ---------HHHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHHH-hcCCCC------ccccCCHHHHHHHHHHHHHh
Confidence                     000111222111211000  0011110 00011 0000 112222      37899999999999999998


Q ss_pred             Hh--CCC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         149 AC--ESR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       149 ~~--~~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      ..  +|.     ||++.+||+.   ..+||++..+.+ |+++.+++..+
T Consensus       296 ~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~d-G~Ivls~~la~  340 (438)
T PRK07721        296 GTNASGSITAFYTVLVDGDDMN---EPIADTVRGILD-GHFVLDRQLAN  340 (438)
T ss_pred             cCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecC-EEEEEeccHHH
Confidence            73  464     8999999975   388999999988 99998887654

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.27  E-value=3.3e-11  Score=100.39  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      .||+|||||||+++|++.++ +..|.+.+.+  ......  ...+.++.+... -....|.                   
T Consensus       150 ~G~tGsGKTTll~al~~~~~-~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~-------------------  207 (308)
T TIGR02788       150 SGGTGSGKTTFLKSLVDEIP-KDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTP-------------------  207 (308)
T ss_pred             ECCCCCCHHHHHHHHHccCC-ccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCH-------------------
Confidence            49999999999999999987 6778777753  111111  112222222100 0000111                   


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                                                      .-.++.+|-.+|+++++|||.+       .+.+++++.+...+.+++.
T Consensus       208 --------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~  248 (308)
T TIGR02788       208 --------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSIT  248 (308)
T ss_pred             --------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEE
Confidence                                            1134456677999999999996       4466777776533345688


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++|...  +....+|+..|.. |.+...|.+.+.+
T Consensus       249 T~Ha~~--~~~~~~Rl~~l~~-~~~~~~g~~~~~~  280 (308)
T TIGR02788       249 TLHAGS--PEEAFEQLALMVK-SSQAGLGLDFAYI  280 (308)
T ss_pred             EEeCCC--HHHHHHHHHHHhh-ccccccCCCHHHH
Confidence            888763  6777999988876 6666667776654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.26  E-value=1.9e-11  Score=103.96  Aligned_cols=77  Identities=25%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc-
Q psy4235         101 SGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF-  170 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~-  170 (197)
                      ..+|.||+|++.||++|+         .+|+++|||||+++||+..+..+++.+.++   +..+++++|+.. .+...+ 
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~  347 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE  347 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence            579999999999999886         799999999999999999999999998764   347888888864 444443 


Q ss_pred             -CeEEEEeCCcEE
Q psy4235         171 -DTVSLLAHGGLL  182 (197)
Q Consensus       171 -d~v~~l~~gg~i  182 (197)
                       ++++.+++ |.+
T Consensus       348 ~~~i~~v~~-G~i  359 (361)
T PRK00064        348 NAKIFHVEQ-GKI  359 (361)
T ss_pred             cCcEEEEeC-CEE
Confidence             47888887 765

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.20  E-value=7.7e-11  Score=92.21  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=40.8

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      +++++|..+|+++++|||.   |++....+   + +.+..|..++.++|...  +...++|++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAAETGHLVMSTLHTNS--AAKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence            4788999999999999996   55543322   3 34456889999999863  456677776553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.20  E-value=1.4e-11  Score=97.68  Aligned_cols=52  Identities=15%  Similarity=0.142  Sum_probs=42.5

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCCcchHHhhc
Q psy4235         118 LTEPQILFCDEPTTGLDSYSANNVVNL-LKQLACE-SRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus       118 ~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~-~~~iii~th~~~~~~~~~~  170 (197)
                      +.+|.++|+|||++|+++.....+... ++.+.+. +.++|++||+.. .+...+
T Consensus       107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e-l~~~~~  160 (218)
T cd03286         107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS-LCDEFH  160 (218)
T ss_pred             CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH-HHHHhh
Confidence            468999999999999999999988887 6777765 889999999863 444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.17  E-value=1.7e-11  Score=86.35  Aligned_cols=55  Identities=20%  Similarity=0.152  Sum_probs=43.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFM   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~   65 (197)
                      +||||||||||++++.       +|++.++|.++..   ....+.++|++|+  +|+. |++|||.+.
T Consensus        21 ~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~~Ni~~~   78 (107)
T cd00820          21 TGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLRLNIFLI   78 (107)
T ss_pred             EcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHHhhceee
Confidence            5999999999999984       6889999998753   2345667888887  4444 899999874

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.15  E-value=1.9e-10  Score=108.34  Aligned_cols=80  Identities=29%  Similarity=0.385  Sum_probs=70.9

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHh
Q psy4235          97 QVQISGLSGGQRKRLALAVQLL------TE--PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE  168 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~------~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~  168 (197)
                      .+++..|||||+-.++||.+|+      .+  -++++|||||..||+.....++++|..+...+.+||||||+.  .+..
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e  887 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKE  887 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHH
Confidence            3678999999999888888765      45  699999999999999999999999999988889999999985  5678


Q ss_pred             hcCeEEEEeC
Q psy4235         169 KFDTVSLLAH  178 (197)
Q Consensus       169 ~~d~v~~l~~  178 (197)
                      .+|.++.+..
T Consensus       888 ~~~~~i~V~k  897 (908)
T COG0419         888 RADVRIRVKK  897 (908)
T ss_pred             hCCeEEEEEe
Confidence            8999888875

>TIGR00611 recf recF protein

Probab=99.12  E-value=1.8e-10  Score=98.10  Aligned_cols=60  Identities=30%  Similarity=0.314  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         101 SGLSGGQRKRLALAVQLLT---------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      ..+|.||+|++.||.+|+.         +|++||||||+++||+..+..+++.|.+.   |..+++++|+..
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            3599999999999999999         99999999999999999999999999764   668999999863

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.05  E-value=6.3e-09  Score=83.24  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcc------hHHhh
Q psy4235         101 SGLSGGQRKRLALAVQLLT--EPQILFCDEPTTG---LDSYSANNVVNLLKQLACESRIVICAIHQPTS------GVFEK  169 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~--~p~llllDEPts~---LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~------~~~~~  169 (197)
                      ...|.++.+.+..+..++.  +|+++++||||+.   .|.....++++.++.+++.+.|+++++|+...      .+..+
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l  178 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI  178 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence            3457788999999999997  9999999999964   45555556666677767778899999887542      14566


Q ss_pred             cCeEEEEeC
Q psy4235         170 FDTVSLLAH  178 (197)
Q Consensus       170 ~d~v~~l~~  178 (197)
                      +|-++.|..
T Consensus       179 ~DgvI~L~~  187 (234)
T PRK06067        179 CDVYLKLRA  187 (234)
T ss_pred             eEEEEEEEe
Confidence            777777753

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.03  E-value=1.1e-09  Score=94.61  Aligned_cols=133  Identities=21%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+||+|||||+++|++..+ ++.|.|.+.|+..                     .+|.|++......            
T Consensus       162 ~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg---------------------~ev~e~~~~~l~~------------  207 (432)
T PRK06793        162 FAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG---------------------REVKDFIRKELGE------------  207 (432)
T ss_pred             ECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc---------------------ccHHHHHHHHhhh------------
Confidence            58999999999999999887 6888776555331                     2566654422111            


Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLL-------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~-------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                               -++.. ..-....+.|.|+|+|+..+.+.+       .++-++++|+||+..|+.  +++...+.+....|
T Consensus       208 ---------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G  276 (432)
T PRK06793        208 ---------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG  276 (432)
T ss_pred             ---------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC
Confidence                     01110 112456788999999999999888       799999999999999995  66666666665457


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      .+..+.+|..  .+.+.+.+   .. +|.+..
T Consensus       277 ~~~~~~s~l~--~L~ERag~---~~-~GSiT~  302 (432)
T PRK06793        277 KTLLMESYMK--KLLERSGK---TQ-KGSITG  302 (432)
T ss_pred             eeeeeeccch--hHHHHhcc---CC-CcceEE
Confidence            7877777742  33444443   34 476543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.00  E-value=7.1e-10  Score=107.83  Aligned_cols=65  Identities=20%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             cccccCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235          95 RRQVQISGLSGGQRKRLA----LAVQ--------LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~----ia~a--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      ..+++++.|||||||+++    +|++        +..+|++++|||||++||+.++..+++++.++   +..+||+||+.
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            345567899999999996    5655        55899999999999999999999999999888   67788888753

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.99  E-value=2.5e-08  Score=71.56  Aligned_cols=60  Identities=32%  Similarity=0.293  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCEEEEEec
Q psy4235         101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN------LLKQLACESRIVICAIH  160 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~------~l~~l~~~~~~iii~th  160 (197)
                      ...++.+..+..++++-...|.++++||+..-.+.........      ...........+|.++|
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  124 (148)
T smart00382       59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence            3456777777777777777799999999999999988776654      22223334667788877

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.98  E-value=2.1e-09  Score=86.39  Aligned_cols=46  Identities=17%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             HHhhCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q psy4235         116 QLLTEPQILFCDEPTTG------LDSYSANNVVNLLKQLACE-SRIVICAIHQP  162 (197)
Q Consensus       116 al~~~p~llllDEPts~------LD~~~~~~i~~~l~~l~~~-~~~iii~th~~  162 (197)
                      +...+|+++++| |+++      +|+.....+++.|++++++ +.++++++|..
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            345799999999 7754      7999999999999998765 78888888865

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK14079 recF recombination protein F; Provisional

Probab=98.97  E-value=2e-09  Score=91.15  Aligned_cols=74  Identities=23%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235         101 SGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d  171 (197)
                      ..+|+||++++.+|+.|+         .+|++++||||+++||+..+..+.+.|....   .+ ++++-+.    ..-||
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~-~it~t~~----~~~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QA-IVAGTEA----PPGAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cE-EEEcCCC----CCCCc
Confidence            358999999999999999         8999999999999999999999998886532   23 3443332    46689


Q ss_pred             eEEEEeCCcEEE
Q psy4235         172 TVSLLAHGGLLA  183 (197)
Q Consensus       172 ~v~~l~~gg~i~  183 (197)
                      +++.+.+ |.+.
T Consensus       334 ~~~~~~~-~~~~  344 (349)
T PRK14079        334 LTLRIEA-GVFT  344 (349)
T ss_pred             eEEEEec-cEec
Confidence            9999987 7664

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.94  E-value=3e-09  Score=93.05  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||+||||++..|++.+. ...|.              +.++++.++.   ...++.|++.+++........   ...
T Consensus       262 vGpnGvGKTTTiaKLA~~~~-~~~G~--------------~kV~LI~~Dt---~RigA~EQLr~~AeilGVpv~---~~~  320 (484)
T PRK06995        262 MGPTGVGKTTTTAKLAARCV-MRHGA--------------SKVALLTTDS---YRIGGHEQLRIYGKILGVPVH---AVK  320 (484)
T ss_pred             ECCCCccHHHHHHHHHHHHH-HhcCC--------------CeEEEEeCCc---cchhHHHHHHHHHHHhCCCee---ccC
Confidence            69999999999999998765 34442              2468888875   346899999988765432111   111


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRK-RLALAVQLLTEP-----QILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~q-rv~ia~al~~~p-----~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ...+......++.+.....+.+...+++- .+.-..+++.++     .+|+||.++.+      ..+.+.++.++..+.+
T Consensus       321 ~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~f~~~~~~  394 (484)
T PRK06995        321 DAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQAYRGPGLA  394 (484)
T ss_pred             CchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHHhccCCCC
Confidence            22333445556666555666665444432 233444455554     68999999877      3445555555555555


Q ss_pred             EEEEecC
Q psy4235         155 VICAIHQ  161 (197)
Q Consensus       155 iii~th~  161 (197)
                      -+|.|+-
T Consensus       395 g~IlTKl  401 (484)
T PRK06995        395 GCILTKL  401 (484)
T ss_pred             EEEEeCC
Confidence            5666664

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.93  E-value=2.1e-08  Score=93.83  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH
Q psy4235         113 LAVQLLTEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRIVICAIHQPTSGVF  167 (197)
Q Consensus       113 ia~al~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~  167 (197)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.+.+++++||++. .+.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~  734 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAA  734 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh
Confidence            567888999999999999999 799999999999999888999999999975 444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.89  E-value=1.3e-09  Score=85.05  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      .||||||||||.++|++++.   .|.+.                +++++.. +..++..+.............   ....
T Consensus         5 ~G~~GsGKSTl~~~l~~~l~---~~~~~----------------v~~~D~~-~~~~~~~~~~~~~~~~~~~~~---~~~~   61 (198)
T cd02023           5 AGGSGSGKTTVAEEIIEQLG---NPKVV----------------IISQDSY-YKDLSHEELEERKNNNYDHPD---AFDF   61 (198)
T ss_pred             ECCCCCCHHHHHHHHHHHhC---CCCeE----------------EEEeccc-ccccccccHHHhccCCCCCCC---cccH
Confidence            49999999999999998763   22232                2222211 111122221111100000000   0111


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY  136 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~  136 (197)
                      +...+.+..+......+.+..++|.|++++..+   .+..++++|+|.|+.+.++.
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            234456666666666777888999999876655   57889999999999998863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.89  E-value=6.4e-09  Score=80.50  Aligned_cols=69  Identities=20%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+++|+|+++ ++.|.|.+.+..-........+++++|..  ..++..++.+.+....+...
T Consensus        31 ~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p  101 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP  101 (186)
T ss_pred             ECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence            59999999999999999988 78999999764321112223456666543  45677899999888766543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.83  E-value=7.2e-11  Score=104.00  Aligned_cols=82  Identities=11%  Similarity=0.079  Sum_probs=63.6

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235          86 VMENLGINHRRQVQISGLSGGQRKRLALA--VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus        86 ~l~~~~l~~~~~~~~~~LSgGq~qrv~ia--~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      +++.+++.+..++.+..+|+|++|||.|+  .++...|+..          +..++.+.++++.+++.|.|+|+++|+..
T Consensus        99 ~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~  168 (484)
T TIGR02655        99 VVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIE  168 (484)
T ss_pred             ccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            34556667777888889999999999999  5666665443          46778899999999888999999999864


Q ss_pred             ch--------HHhhcCeEEEEe
Q psy4235         164 SG--------VFEKFDTVSLLA  177 (197)
Q Consensus       164 ~~--------~~~~~d~v~~l~  177 (197)
                      ..        ...+||.|+.|+
T Consensus       169 ~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       169 EYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             cccccccCCceeEeeeeEEEEE
Confidence            20        256789999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.80  E-value=1.4e-08  Score=69.49  Aligned_cols=52  Identities=31%  Similarity=0.513  Sum_probs=40.3

Q ss_pred             ccccCCCCCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          96 RQVQISGLSGGQR-KRLALAVQLL------T------EPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        96 ~~~~~~~LSgGq~-qrv~ia~al~------~------~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      ..+..+.+||||+ ..+.+|.+++      .      .|++++|||||++||+.....+++++++
T Consensus        26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            3567899999999 4444444332      3      3799999999999999999999999874

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.74  E-value=1.1e-07  Score=80.38  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235         112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus       112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      +++++|-.+|+++++||+.   |+.+....++    .+..|..++.++|...  +....+|++
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~  240 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERII  240 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHH
Confidence            3567888899999999997   8877654443    3456888888888642  345555554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.68  E-value=3.1e-08  Score=92.60  Aligned_cols=67  Identities=19%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCe
Q psy4235         102 GLSGGQRKRLALAVQLLT--EPQILFCDEP---TTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDT  172 (197)
Q Consensus       102 ~LSgGq~qrv~ia~al~~--~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~  172 (197)
                      .+|.=+.....++.+|-.  ++.++|+|||   |+.+|..  .....++..+.+. +..++++||..  ++..++++
T Consensus       666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~--el~~l~~~  738 (854)
T PRK05399        666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK  738 (854)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence            455555555666666554  8999999999   8888844  3456666777665 57899999984  46677764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.60  E-value=1.1e-07  Score=86.17  Aligned_cols=103  Identities=19%  Similarity=0.316  Sum_probs=67.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee--------EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG--------EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G--------~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~   72 (197)
                      +||||+|||||.++|.+..+ +..|        -|.+++..+..                  ......+-.+.. .    
T Consensus       181 ~Gp~GtGKTTLAr~i~~~~~-~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg~-~----  236 (615)
T TIGR02903       181 YGPPGVGKTTAARLALEEAK-KLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLGS-V----  236 (615)
T ss_pred             ECCCCCCHHHHHHHHHHhhh-hccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcCC-c----
Confidence            59999999999999998765 3333        24444433210                  000001111110 0    


Q ss_pred             cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235          73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                         .....+.+.+.++.+|+.......+..+|||                +|+||| +..||+..+..+.+.+++
T Consensus       237 ---~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       237 ---HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             ---cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence               0111233455678889888888888999999                999999 799999999999999976

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.57  E-value=1.2e-07  Score=70.54  Aligned_cols=64  Identities=14%  Similarity=0.200  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQL-----LTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al-----~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ..+.+++...+.. -....+...+|.+++++.......     ...++++    |+|++|.....++.+.|.++
T Consensus       100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            3455666666543 223445667889988877666553     3345555    99999999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.56  E-value=1.8e-08  Score=80.27  Aligned_cols=58  Identities=12%  Similarity=0.015  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCCCC--CHHHHHHHH-HHHHHHHhCCCEEEEEecCCcc-------hHHhhcCeEEEEe
Q psy4235         120 EPQILFCDEPTTGL--DSYSANNVV-NLLKQLACESRIVICAIHQPTS-------GVFEKFDTVSLLA  177 (197)
Q Consensus       120 ~p~llllDEPts~L--D~~~~~~i~-~~l~~l~~~~~~iii~th~~~~-------~~~~~~d~v~~l~  177 (197)
                      +|+++++|.|+.-+  ++...+++. .+.+.+++.+.|+|+++|....       .+..+||.|+.|+
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            34555666554321  232333444 3444455668999999995321       2456789888876

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.55  E-value=1.9e-06  Score=80.43  Aligned_cols=48  Identities=25%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         116 QLLTEPQILFCDEPTTGLD-SYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       116 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      .+..+|.++++|||...|| +...+.+.+.++.+++.+..++++||++.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~  686 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE  686 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3457899999999999999 88899999999999988999999999874

>PLN03210 Resistant to P

Probab=98.54  E-value=3e-07  Score=88.82  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC   32 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~   32 (197)
                      +|++|+|||||++++.+.+....+|.+++++.
T Consensus       213 ~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        213 WGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             EcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            59999999999999977665456899988753

syringae 6; Provisional

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.49  E-value=6.3e-08  Score=74.41  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-cc-ceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-MS-RISGYVAQQDFLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-~~-~~~~~v~q~~~~~~~ltv~e~l~~~~   66 (197)
                      +|+||||||||+++|++++. +    +.++|.++.... .+ ...++.+|+...++..++..++.+..
T Consensus         9 ~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~   71 (176)
T PRK09825          9 MGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL   71 (176)
T ss_pred             ECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence            59999999999999999877 3    578888774321 11 23577777766566677777776644

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.48  E-value=2.8e-06  Score=65.49  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCCc-ccccccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          82 TITRVMENLGIN-HRRQVQISGLSGGQRKRLA--LAVQLLT-EPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        82 ~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~--ia~al~~-~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      .+.++++..++. -..-.++..+|+|++|++.  +++.+-. ++++    .|+|++|....+++++.|.++.++
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            445566666664 3345567789999999877  5555543 3444    399999999999999999887654

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.47  E-value=7.6e-06  Score=65.71  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCC
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNVV-NLLKQLAC-ESRIVICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~-~~~~iii~th~~  162 (197)
                      .+..++|+||+..|=++.....+. .+++.+.+ .+..+|++||..
T Consensus       121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~  166 (235)
T PF00488_consen  121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH  166 (235)
T ss_dssp             -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred             ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence            356799999999999999888764 44555666 478889999986

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.44  E-value=6.9e-08  Score=73.23  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=43.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cc-cceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VM-SRISGYVAQQDFLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~   66 (197)
                      +|+||||||||+++|++.+     |.+.++|..+... .. +...|+.+|+....+.+++.++..+..
T Consensus         1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   63 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM   63 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence            6999999999999998765     4577887544221 11 233578888866667778888887754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.43  E-value=3.6e-08  Score=74.45  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH--HHHHhC-CCEEEEEecCCcchHHhhcCeE
Q psy4235         104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL--KQLACE-SRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus       104 SgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l--~~l~~~-~~~iii~th~~~~~~~~~~d~v  173 (197)
                      +-+++++..+++++...|-++++    +..|......+....  ...... ...+.+++++. ..+.++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gl~~l~~~l  172 (176)
T cd01881         105 ELKLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEELVRELALEEGAEVVPISAKTE-EGLDELIRAI  172 (176)
T ss_pred             HHHHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhh-cCHHHHHHHH
Confidence            34455667778888899999999    888876666655541  111122 33455555543 3455555443

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.41  E-value=2.3e-06  Score=74.50  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             eCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         127 DEP--TTGLDSYSANNVVNLLKQLACESR-------IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       127 DEP--ts~LD~~~~~~i~~~l~~l~~~~~-------~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      .||  +.|.||.....+.+++.+....++       ||++.+||..   ..++|++..+.+ |.++.+....+
T Consensus       277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~d-G~ivLsr~la~  345 (440)
T TIGR01026       277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILD-GHIVLSRALAQ  345 (440)
T ss_pred             CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccc-eEEEEecchhh
Confidence            565  469999999999999999876666       7777888763   568899999987 89888766654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.40  E-value=8.1e-07  Score=64.25  Aligned_cols=54  Identities=28%  Similarity=0.348  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCC
Q psy4235         108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQP  162 (197)
Q Consensus       108 ~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~  162 (197)
                      .+......+...++.++++||.-.. ++.....+.+.+.....     .+..+|++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~  130 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP  130 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence            4555666677789999999998765 66677788888888753     356777887754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00152 dephospho-CoA kinase

Probab=98.36  E-value=6.4e-07  Score=69.31  Aligned_cols=71  Identities=18%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcc-hHHhhcCeEEEEeC
Q psy4235         106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS-GVFEKFDTVSLLAH  178 (197)
Q Consensus       106 Gq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~-~~~~~~d~v~~l~~  178 (197)
                      |+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+.+...++.++++.+|...+ .+...||.++++..
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~  132 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV  132 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence            78899999999999999988877  7899999999999998886556788888887631 25678999999875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.32  E-value=4.4e-07  Score=78.57  Aligned_cols=67  Identities=18%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce---eEEEECCeeCCc--------c-cccceEEEEecCCCCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR--------T-VMSRISGYVAQQDFLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~---G~i~~~g~~~~~--------~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~   68 (197)
                      +|+||||||||+++|+|+.. ++.   |.|-.++.++..        . ..+..+++++|+...+..+++.+++.+.+..
T Consensus       161 ~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy  239 (434)
T PRK07196        161 MAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATY  239 (434)
T ss_pred             ECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence            59999999999999999887 454   444445544421        1 1234689999999999999999998876654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.32  E-value=3.9e-07  Score=79.32  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=28.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISR   36 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~   36 (197)
                      +|||||||||||+  +|+.. |++| +|.++|.++..
T Consensus        38 ~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        38 CGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSFS   71 (504)
T ss_pred             ECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECCC
Confidence            6999999999999  67777 5666 89999999854

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.29  E-value=7.5e-07  Score=75.75  Aligned_cols=62  Identities=24%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +|+||+|||||++.|+|... +..|+|.+++.........+.+.+++|...++.. ++..++.+
T Consensus       201 vG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l  262 (356)
T PRK01889        201 LGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL  262 (356)
T ss_pred             ECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence            59999999999999999988 7999999987543222234567899988776654 45555443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.27  E-value=6.6e-07  Score=71.44  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=42.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeE----EEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGE----ILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~----i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~   68 (197)
                      .||||||||||+++|++.++ +.+|.    |.+++...... .....+++++.. .+..+++.+...+...+
T Consensus        39 ~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         39 AGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRL  107 (229)
T ss_pred             ECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence            49999999999999999998 67887    55554333221 122346766533 34566777776665443

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.25  E-value=1.7e-06  Score=73.61  Aligned_cols=111  Identities=19%  Similarity=0.195  Sum_probs=56.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C-ceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc-cc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L-VQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR-TT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~-~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-~~   75 (197)
                      .||+||||||++++|++.+.+ + ..+.|.....++.-  .......+++.|...--...+..+.+.-..+..+... ..
T Consensus       140 ~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vG  219 (358)
T TIGR02524       140 TGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHAILVG  219 (358)
T ss_pred             ECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCEEeee
Confidence            499999999999999987741 1 23466555555431  1122334778886431111244444443333322110 00


Q ss_pred             HHHHHHHHHHHHHHc-------------CCcccccccCCCCCHHHHHHH
Q psy4235          76 WLELNKTITRVMENL-------------GINHRRQVQISGLSGGQRKRL  111 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~-------------~l~~~~~~~~~~LSgGq~qrv  111 (197)
                      .....+.+..+++..             +..+...+....+|+||+--+
T Consensus       220 EiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~  268 (358)
T TIGR02524       220 EARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR  268 (358)
T ss_pred             eeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence            111223344454441             122334455667888887543

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.23  E-value=9.8e-07  Score=68.17  Aligned_cols=45  Identities=36%  Similarity=0.503  Sum_probs=32.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQ   49 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~   49 (197)
                      +||||||||||+++|++... +   .+.+.+..+....   ....+++++|+
T Consensus         8 ~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQREQ-T---QLLVAHRYITRPASAGSENHIALSEQE   55 (186)
T ss_pred             ECCCCCCHHHHHHHHhccCC-C---eEEEcCEECCCccchhHHhheeEcHHH
Confidence            59999999999999998765 3   4777777765421   22446777775

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.22  E-value=6.9e-07  Score=73.78  Aligned_cols=68  Identities=12%  Similarity=0.092  Sum_probs=45.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~   69 (197)
                      .||||||||||+++|.+++.. +.+|+|.+.+.+--.  ....+..+++ |...+++.+++.+.+.+...+.
T Consensus        68 aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        68 AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            499999999999999988752 357887765444211  1112234543 6666778888888887765443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.20  E-value=1.8e-06  Score=71.33  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc--ccc-ceEEEEecCCCC---C-CCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT--VMS-RISGYVAQQDFL---I-EELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~---~-~~ltv~e~l~~~~   66 (197)
                      +|+||+|||||+|.|.|... +..|+|..   .|...+..  ... ...+++.+.|.+   . ..++..|...++.
T Consensus       167 ~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~  241 (287)
T cd01854         167 VGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFP  241 (287)
T ss_pred             ECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHhH
Confidence            59999999999999999887 68898875   34333321  111 125789998876   3 4677777766653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.20  E-value=9.4e-07  Score=73.99  Aligned_cols=64  Identities=20%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---------cccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---------VMSRISGYVAQQDFLIEELTVLEHLQFM   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---------~~~~~~~~v~q~~~~~~~ltv~e~l~~~   65 (197)
                      +|||||||||++..|++.+. +..++|.+.+.|..+.         ..+..+.+++|.....|..++.+++...
T Consensus       120 vGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        120 VGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             ECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            69999999999999999887 5778999888776321         1123478888865555655667776654

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.16  E-value=3.3e-06  Score=73.42  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=58.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC---eeCCc---ccc---cceEEEE-----ecCCC--CCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISR---TVM---SRISGYV-----AQQDF--LIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g---~~~~~---~~~---~~~~~~v-----~q~~~--~~~~ltv~e~l~~   64 (197)
                      +|+||+|||||+++|++..+..+.|.|.+.|   .++..   ..+   ....+++     +|++.  +.+.+ +...++.
T Consensus       170 ~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~-va~~IAE  248 (442)
T PRK06315        170 FAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAY-VGTAIAE  248 (442)
T ss_pred             ECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHH-HHHHHHH
Confidence            5999999999999999987423457777744   44421   111   1223445     77653  33433 4444444


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCc-----ccccccCCCCC
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGIN-----HRRQVQISGLS  104 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS  104 (197)
                      .++.+............++.++++.+++.     .....+|..||
T Consensus       249 ~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        249 YFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             HHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence            33322211112234556788888888883     34455555554

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.15  E-value=1.7e-06  Score=77.26  Aligned_cols=59  Identities=25%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFM   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~   65 (197)
                      .||||||||||++.|++.++  ..|.|.+||....    .+.+.+.+|++..++..++.++|...
T Consensus        71 aGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~----~~~i~~nfD~P~a~D~d~L~enL~~L  129 (656)
T PLN02318         71 AGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDS----SRIIDGNFDDPRLTDYDTLLDNIHDL  129 (656)
T ss_pred             ECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecc----hhhhCccCCChhhcchhHHHHHHHHH
Confidence            49999999999999999864  6899999987521    23356788888888878898988653

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.13  E-value=2e-06  Score=80.48  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=35.4

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEecCCcchHHhhcC
Q psy4235         118 LTEPQILFCDEPTTGLDSYSANNVVN-LLKQLAC-ESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus       118 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~~~iii~th~~~~~~~~~~d  171 (197)
                      +.++.++|+||+-.|-|+.....+.. ++..+.+ .+..++++||..  ++..+++
T Consensus       669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~--eL~~l~~  722 (840)
T TIGR01070       669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF--ELTALEE  722 (840)
T ss_pred             CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch--HHHHHhh
Confidence            45789999999977777766666443 3344454 577899999975  3445543

>TIGR00235 udk uridine kinase

Probab=98.13  E-value=7.3e-07  Score=70.06  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||++.|+++++
T Consensus        12 ~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235        12 GGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             ECCCCCCHHHHHHHHHHHhc
Confidence            59999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.12  E-value=1.4e-05  Score=69.91  Aligned_cols=70  Identities=11%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEE-EeCCcEEEEecChh
Q psy4235         119 TEPQILFCDEPTTGLDSY-SANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL-LAHGGLLAYHGQVS  189 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~-~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~-l~~gg~i~~~g~~~  189 (197)
                      .+|++|++|||...+|.. .+..++..+..+...++.+|+++++....+..+.+++.- +.. |.++...+|+
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~pd  264 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPD  264 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCCC
Confidence            379999999999988765 457899999998877777888774444456666666542 433 6665555554

>TIGR00416 sms DNA repair protein RadA

Probab=98.10  E-value=1e-05  Score=70.89  Aligned_cols=60  Identities=18%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcc-------hHHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTTGL---------DSYSANNVVNLLKQLAC-ESRIVICAIHQPTS-------GVFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts~L---------D~~~~~~i~~~l~~l~~-~~~~iii~th~~~~-------~~~~~~d~v~~l~~  178 (197)
                      .+|+++++|.-.+=.         +....+++...|.++++ .+.|+++++|...+       .+.+.+|.|+.|+.
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~  245 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG  245 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence            479999999875421         12334556666666654 58899999886432       15778999999875

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.09  E-value=6e-06  Score=80.00  Aligned_cols=73  Identities=27%  Similarity=0.389  Sum_probs=63.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEE
Q psy4235         100 ISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL  175 (197)
Q Consensus       100 ~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~  175 (197)
                      +..||||||-..+||..++    ..+|+++|||--++||..+...+.++|++.. .+.-.|++||..  ..+..+|+++-
T Consensus      1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~--~~m~~ad~l~G 1140 (1163)
T COG1196        1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK--GTMEAADRLVG 1140 (1163)
T ss_pred             hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh--HHHHHHHHHee
Confidence            4669999999999998775    6789999999999999999999999999997 456788889986  46788888543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.08  E-value=1.8e-05  Score=67.73  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCcc-------hHHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTT----GLD-----SYSANNVVNLLKQLAC-ESRIVICAIHQPTS-------GVFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts----~LD-----~~~~~~i~~~l~~l~~-~~~~iii~th~~~~-------~~~~~~d~v~~l~~  178 (197)
                      .+|+++++|+-.+    .+|     ....+++...|.++++ .+.++|++.|-..+       .+.+.+|.++.++.
T Consensus       157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~  233 (372)
T cd01121         157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG  233 (372)
T ss_pred             cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence            4899999999632    232     2334455666666654 47788887774221       26788999998875

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.06  E-value=7.2e-06  Score=68.11  Aligned_cols=64  Identities=27%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc-cc--cceEEEEecCCCCC----CCCCHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT-VM--SRISGYVAQQDFLI----EELTVLEHLQFM   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~-~~--~~~~~~v~q~~~~~----~~ltv~e~l~~~   65 (197)
                      +|+||+|||||+|.|+|... +..|+|..   .|...+.. .+  ....+|+.+.|.+.    ..++..+...++
T Consensus       170 ~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f  243 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYF  243 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHH
Confidence            69999999999999999887 68899976   44444321 11  12247888888766    455665554443

>PRK13764 ATPase; Provisional

Probab=98.06  E-value=3.4e-05  Score=69.48  Aligned_cols=62  Identities=18%  Similarity=0.276  Sum_probs=44.5

Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------------CCcchHHhhcCeEEEEeCCcE
Q psy4235         117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH---------------QPTSGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       117 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th---------------~~~~~~~~~~d~v~~l~~gg~  181 (197)
                      |..+|+++++||.-..   ++    ++++..++..|..++-+.|               +. ..+...+|+++++++ |+
T Consensus       321 LR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~-G~  391 (602)
T PRK13764        321 LLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIED-GE  391 (602)
T ss_pred             HhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeC-CE
Confidence            6789999999999743   22    4444455545667888888               54 357789999999998 87


Q ss_pred             E--EEecC
Q psy4235         182 L--AYHGQ  187 (197)
Q Consensus       182 i--~~~g~  187 (197)
                      +  +++.+
T Consensus       392 I~~v~~~~  399 (602)
T PRK13764        392 VSKVYDLE  399 (602)
T ss_pred             EEEEEeee
Confidence            7  45444

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.04  E-value=6.3e-06  Score=71.66  Aligned_cols=50  Identities=30%  Similarity=0.331  Sum_probs=38.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC---eeCCc-------ccccceEEEEecCCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISR-------TVMSRISGYVAQQDF   51 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g---~~~~~-------~~~~~~~~~v~q~~~   51 (197)
                      +||||||||||+++|+++.. ++.|.|.+.|   .++..       ..+++.++|++|.+.
T Consensus       171 ~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        171 FAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence            59999999999999999888 6899998864   44431       112356899999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-14
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-14
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-12
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		4e-12
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-12
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-11
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-11
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-11
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		2e-11
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		2e-11
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-11
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		3e-11
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		3e-11
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-11
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-11
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		8e-11
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		3e-10
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		6e-10
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		6e-10
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		7e-10
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		8e-10
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		9e-10
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-09
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		4e-09
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-09
1g29_1	372	Malk Length = 372		4e-09
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-08
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		7e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		9e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		9e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		9e-08
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		9e-08
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		1e-07
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-07
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-07
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		6e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-07
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		5e-07
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		5e-07
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		6e-07
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-06
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-06
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-06
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-06
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-06
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-06
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-06
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		6e-06
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		6e-06
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		7e-06
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		9e-06
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		2e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		3e-05
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-05
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		9e-05
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		1e-04
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		1e-04
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-04
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		3e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		3e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		3e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-04
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		4e-04
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		6e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		7e-04
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		7e-04
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		8e-04
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		9e-04
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		9e-04

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRIS---GYVAQQDFLIEE 55
           + PSG+GK+T L  LN  ++   +GEI+++G  +    T ++++    G V Q+  L   
Sbjct: 35  IGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +TVL ++  +A + + R+    +       +++ +G+  +       LSGGQ +R+A+A 
Sbjct: 94  MTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 151
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            L  EP+I+  DEPT+ LD      V++++KQLA E   ++   H+
Sbjct: 152 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRIS---GYVAQQDFLIEE 55
           + PSG+GK+T L  LN  ++   +GEI+++G  +    T ++++    G V Q+  L   
Sbjct: 56  IGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +TVL ++  +A + + R+    +       +++ +G+  +       LSGGQ +R+A+A 
Sbjct: 115 MTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            L  EP+I+  DEPT+ LD      V++++KQLA E   ++   H+
Sbjct: 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 4   SGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLE 60
           +G+GKTTLL    K + GL+   GEI L+G P    ++ +  GYV Q     I   TV E
Sbjct: 46  NGSGKTTLL----KILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEE 101
Query: 61  HLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
            + F +  + +D      E+ K I +V+E +G++         LSGGQ++RLA+A  L  
Sbjct: 102 DVAFSLEIMGLDES----EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLAR 157
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           + + L  DEP + LD  S   +  +L+ L  E + +I   H+
Sbjct: 158 DTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
           +  SG+GK+TLL  L   +    +G++ L G  +  T    +S       G+V Q  +LI
Sbjct: 36  IGASGSGKSTLLYILG-LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94
Query: 54  EELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
            ELT LE++   M K+   ++    E  +    ++  LG+  +   +   LSGG+++R+A
Sbjct: 95  PELTALENVIVPMLKMGKPKK----EAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA 150
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +A  L  EP +LF DEPT  LDS +   V+++  ++      ++   H+
Sbjct: 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GKTT   +LA + K   G +   ++L+N  P       R  G V Q   L   +
Sbjct: 35  LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK----YREVGMVFQNYALYPHM 90
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E++ F  +    RR +  E+ K +  +   L I++    + + LSGGQ++R+ALA  
Sbjct: 91  TVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
           L+ +P++L  DEP + LD+
Sbjct: 148 LVKQPKVLLFDEPLSNLDA 166

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1   MSPSGAGKTTLL---AALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLI 53
           M PSG+GK+T+L     L+K  +G V  + +    L+   +++    +I G+V QQ  LI
Sbjct: 37  MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLI 95
Query: 54  EELTVLEHLQ----FMAKLTM---DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
             LT LE+++    F  +  M   +RR   LE  K     +E    NH+     + LSGG
Sbjct: 96  PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE--LEERFANHKP----NQLSGG 149
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
           Q++R+A+A  L   P I+  D+PT  LDS +   ++ LLK+L  E  + V+   H 
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GK+TLL   A L     G L  GE  +N  P +     R  G V Q   L   L
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +V E++ F  KL   ++     +N+ + +V E L + H    +   LSGGQR+R+A+   
Sbjct: 91  SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
           L+ EP +   DEP + LD+
Sbjct: 148 LVAEPSVFLLDEPLSNLDA 166

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GK+TLL   A L     G L  GE  +N  P +     R  G V Q   L   L
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +V E++ F  KL   ++     +N+ + +V E L + H    +   LSGGQR+R+A+   
Sbjct: 91  SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
           L+ EP +   DEP + LD+
Sbjct: 148 LVAEPSVFLLDEPLSNLDA 166

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTV 58
           PSG GK+T+ + L +R      GEI ++G PI    +    S+I G+V+Q D  I   T+
Sbjct: 36  PSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQ-DSAIMAGTI 92
Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITR-VMENLGINHRRQVQISG--LSGGQRKRLALAV 115
            E+L +  +        W  L+    R  +EN+      +V   G  +SGGQR+RLA+A 
Sbjct: 93  RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
             L  P+IL  DE T  LDS S + V   L  L  + R  +   H+
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAHR 197

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1   MSPSGAGKTTLL---AALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLI 53
           M PSG+GK+T+L     L+K  +G V  + +    L+   +++    +I G+V QQ  LI
Sbjct: 37  MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLI 95
Query: 54  EELTVLEHLQ----FMAKLTM---DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
             LT LE+++    F  +  M   +RR   LE  K     +E    NH+     + LSGG
Sbjct: 96  PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE--LEERFANHKP----NQLSGG 149
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
           Q++R+A+A  L   P I+  D+PT  LDS +   ++ LLK+L  E  + V+   H 
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
           SGAGK+TL+  +N  ++   +G +L++G  ++    S ++      G + Q   L+   T
Sbjct: 40  SGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 98
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V  ++    +L     T   E+ + +T ++  +G+  +     S LSGGQ++R+A+A  L
Sbjct: 99  VFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 155
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
            + P++L CDE T+ LD  +  +++ LLK +
Sbjct: 156 ASNPKVLLCDEATSALDPATTRSILELLKDI 186

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVAQQ-DFLIEELT 57
           +G GK+TL    N  +K    G IL +  PI  SR  + ++    G V Q  D  +   +
Sbjct: 43  NGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V + + F A   ++ +    E+ K +   ++  GI H +      LS GQ+KR+A+A  L
Sbjct: 102 VYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
           + EP++L  DEPT GLD    + ++ LL ++  E  I +I A H 
Sbjct: 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GK+TLL   A L     G L  GE  +N  P +     R  G V Q   L   L
Sbjct: 35  VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +V E++ F  KL   ++     +N+ + +V E L + H    +   LSGGQR+R+A+   
Sbjct: 91  SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
           L+ EP +   D+P + LD+
Sbjct: 148 LVAEPSVFLLDQPLSNLDA 166

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIE 54
           +  SGAGK+TL+  +N  ++   +G +L++G  ++    S ++      G + Q   L+ 
Sbjct: 60  IGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS 118
Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
             TV  ++    +L     T   E+ + +T ++  +G+  +     S LSGGQ++R+A+A
Sbjct: 119 SRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
             L + P++L CD+ T+ LD  +  +++ LLK +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDI 209

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
           SGAGK+TL+  +N  ++   +G +L++G  ++    S ++      G + Q   L+   T
Sbjct: 63  SGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           V  ++    +L     T   E+ + +T ++  +G+  +     S LSGGQ++R+A+A  L
Sbjct: 122 VFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
            + P++L CD+ T+ LD  +  +++ LLK +
Sbjct: 179 ASNPKVLLCDQATSALDPATTRSILELLKDI 209

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 2   SPSGAGKTT---LLAALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLIE 54
            PSG+GK+T   ++  L+K  +G V  + +    L+   +++    +I G+V QQ  LI 
Sbjct: 38  GPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLIP 96
Query: 55  ELTVLEHLQFM-------AKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQ 107
            LT LE+++         A    +RR   LE  K     +E    NH+     + LSGGQ
Sbjct: 97  LLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE--LEERFANHKP----NQLSGGQ 150
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
           ++R+A+A  L   P I+  DEPT  LDS +   +  LLK+L  E  + V+   H 
Sbjct: 151 QQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-GYVAQQDFLIEELTVL 59
           + P+GAGK+  L  +   VK   +GE+ LNG  I+     R   G+V Q   L   L+V 
Sbjct: 30  LGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
            ++ +       R    +E ++ +  + E LGI H    + + LSGG+R+R+ALA  L+ 
Sbjct: 89  RNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143
Query: 120 EPQILFCDEPTTGLD 134
           +P++L  DEP + +D
Sbjct: 144 QPRLLLLDEPLSAVD 158

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVL 59
           + PSG+GK+TLL  +    K    G+I  +   ++      R  G V Q   L   +TV 
Sbjct: 35  LGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93
Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           +++ F  +L   R+    E++K +  V + L I+         LSGGQ++R+A+A  L+ 
Sbjct: 94  KNIAFPLEL---RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
           EP++L  DEP + LD+     V   LK+L  E
Sbjct: 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1   MSPSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVM---SRISGYVAQQDFLIE 54
           + PSG GKTT L   A L +  +G +  E  L   P     +    R    V Q   L  
Sbjct: 38  LGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYP 97
Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
             TV +++ F  KL   R+    E++K +  V E LG+      +   LSGGQR+R+AL 
Sbjct: 98  HXTVYDNIAFPLKL---RKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALG 154
Query: 115 VQLLTEPQILFCDEPTTGLDS 135
             ++  P++   DEP + LD+
Sbjct: 155 RAIIRRPKVFLXDEPLSNLDA 175

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 1   MSPSGAGKTTLLAALNKRVK---GLVQ--GEILLNGCPISRTVMSRISGYVAQQDFLIEE 55
           + P+GAGKTT L  ++  +K   G+V   G+ ++      R ++S    Y+ ++      
Sbjct: 47  IGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS----YLPEEAGAYRN 102
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +  +E+L+F+A       ++  E+ + + R  E  G+  + + ++S  S G  ++L +A 
Sbjct: 103 MQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            L+  P++   DEPT+GLD  +A  V  +LKQ + E   ++ + H
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQGEILL---NGCPISRTVMSRISGYVAQQDFLIE 54
           + PSGAGKTT   ++A L+    G +  +  L   NG  I      +I G V Q   L  
Sbjct: 37  LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYP 95
Query: 55  ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
            LT  E++ F +  + M +     E+ K +  V + L I+H        LSGGQ++R+AL
Sbjct: 96  NLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVAL 151
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  L+ +P +L  DEP + LD+   ++   L+K++     + +  +    + +F   D V
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 1   MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
           + P+GAGKT  L    + + G      G ILL+G  +  T +S     +A   F+ +  +
Sbjct: 32  LGPTGAGKTLFL----ELIAGFHVPDSGRILLDGKDV--TDLSPEKHDIA---FVYQNYS 82
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
           +  H+     L    R   ++  K +     +L I H        LSGG+++R+ALA  L
Sbjct: 83  LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL 142
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
           +T P+IL  DEP + LD  +  N   +L  L  ++++ +  I
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 1   MSPSGAGKTTLL---AALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEE 55
           + PSG+GKTT+L   A L +  KG   + G+ + +  P  R V     G V Q   L + 
Sbjct: 47  LGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV-----GLVFQNYALFQH 101
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           +TV +++ F  +   ++R    E++  +  ++  + +          LSGGQ++R+ALA 
Sbjct: 102 MTVYDNVSFGLR---EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
            L   PQ+L  DEP   +D+     +   ++Q+  E
Sbjct: 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 88/157 (56%), Gaps = 11/157 (7%)
Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           P+G GKTTLL  ++  +K L +GEI+ NG PI++ V  +I  ++ ++  +  +++V ++L
Sbjct: 43  PNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITK-VKGKIF-FLPEEIIVPRKISVEDYL 99
Query: 63  QFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP 121
           + +A L        +++NK  I   +E++ +   ++ ++  LS G  +R+ LA  LL   
Sbjct: 100 KAVASLY------GVKVNKNEIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNA 152
Query: 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           +I   D+P   +D  S + V+  + ++  E  IVI +
Sbjct: 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQGEILL---NGCPISRTVMSRISGYVAQQDFLIE 54
           + PSGAGKTT   ++A L+    G +  +  L   NG  I      +I G V Q   L  
Sbjct: 37  LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYP 95
Query: 55  ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
            LT  E++ F +  + M +     E+ K +  V + L I+H        LSG Q++R+AL
Sbjct: 96  NLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           A  L+ +P +L  DEP + LD+   ++   L+K++     + +  +    + +F   D V
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIE 54
           + PSG GKTT   ++A L +  +G +     L   P   I      R    V Q   L  
Sbjct: 35  LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP 94
Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
            +TV +++ F  KL   R+    E+++ +  V E LG+      +   LSGGQR+R+AL 
Sbjct: 95  HMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151
Query: 115 VQLLTEPQILFCDEPTTGLDS 135
             ++ +PQ+   DEP + LD+
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDA 172

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 85  RVMENLGINHRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143
           + +  +GI+ R Q +    LSGGQ++R+++A  L  EP +L  DEPT+ LD      V+ 
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 144 LLKQLACESRIVICAIHQ 161
           +++QLA E + ++   H+
Sbjct: 195 IMQQLAEEGKTMVVVTHE 212

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY--VAQQDFLIEELTV 58
           + PSGAGK+T+L  L  R   +  G I ++G  IS+   + +  +  V  QD ++   T+
Sbjct: 86  VGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGL--SGGQRKRLALAVQ 116
            +++++      +           I   +      +R QV   GL  SGG+++R+A+A  
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +L  P I+  DE T+ LD+ +   +   L ++ C +R  I   H+
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKV-CANRTTIVVAHR 248

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 38  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 97  ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 146
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI   H+
Sbjct: 147 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 197

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 44  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI   H+
Sbjct: 153 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 40  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 98
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 99  ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 148
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI   H+
Sbjct: 149 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 199

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GKTT   ++A L +  +G +  G+  +   P       R    V Q   +   +
Sbjct: 44  LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK----DRNISMVFQSYAVWPHM 99
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E++ F  K+   ++    E++K +    E L I        + LSGGQR+R+A+A  
Sbjct: 100 TVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 156
Query: 117 LLTEPQILFCDEPTTGLDS 135
           ++ EP +L  DEP + LD+
Sbjct: 157 IVVEPDVLLMDEPLSNLDA 175

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 1   MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
           + PSG GKTT   ++A L +  +G +  G+  +   P       R    V Q   +   +
Sbjct: 43  LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK----DRNISMVFQSYAVWPHM 98
Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TV E++ F  K+   ++    E++K +    E L I        + LSGGQR+R+A+A  
Sbjct: 99  TVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155
Query: 117 LLTEPQILFCDEPTTGLDS 135
           ++ EP +L  DEP + LD+
Sbjct: 156 IVVEPDVLLMDEPLSNLDA 174

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNG-----CPISRTVMSRISGYVAQQDFLIEE 55
           +G+GK+TLL      V GL++   G++L +G       I R +   I+    +  F  E 
Sbjct: 42  TGSGKSTLLQI----VAGLIEPTSGDVLYDGERKKGYEIRRNI--GIAFQYPEDQFFAER 95
Query: 56  LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRL 111
             V + + F  K    DR    L     + + ME +G++    + +V    LSGG+++R+
Sbjct: 96  --VFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRV 147
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           A+A  ++ EP IL  DEP  GLD     +++ ++++     + VI   H 
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNG-----CPISRTVMSRISGYVAQQDFLIEE 55
           +G+GK+TLL      V GL++   G++L +G       I R +   I+    +  F  E 
Sbjct: 44  TGSGKSTLLQI----VAGLIEPTSGDVLYDGERKKGYEIRRNI--GIAFQYPEDQFFAER 97
Query: 56  LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRL 111
             V + + F  K    DR    L     + + ME +G++    + +V    LSGG+++R+
Sbjct: 98  --VFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRV 149
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           A+A  ++ EP IL  DEP  GLD     +++ ++++     + VI   H 
Sbjct: 150 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           Q +GLSGGQR+R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI  
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIII 196
Query: 159 IHQ 161
            H+
Sbjct: 197 AHR 199

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 1    MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEEL 56
            + PSG GK+T++A L +R    + GEI ++G  I         S+I+  +  Q+  + + 
Sbjct: 1111 VGPSGCGKSTVVALL-ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA--IVSQEPTLFDC 1167
Query: 57   TVLEHLQF--------MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
            ++ E++ +        MA++    R     ++  I  + E  G   R   + + LSGGQ+
Sbjct: 1168 SIAENIIYGLDPSSVTMAQVEEAARLA--NIHNFIAELPE--GFETRVGDRGTQLSGGQK 1223
Query: 109  KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            +R+A+A  L+  P+IL  DE T+ LD+ S   V   L + A E R  I   H+
Sbjct: 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           LSGGQ++R+A+A  L+  P+IL  DE T+ LD+ S   V   L + A + R  I   H+
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHR 612

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 44  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           R+A+A  L+  P+IL  D+ T+ LD Y + +V+       C+ R VI   H+
Sbjct: 153 RIAIARALVNNPKILIFDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 26/168 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 38  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 97  ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 146
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
           R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI 
Sbjct: 147 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVII 193

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 26/168 (15%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
           SG+GK+TL   L +R      G++L++G  ++      + R  G V Q + L+    +  
Sbjct: 44  SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59  ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                    +E + + AKL           +  I+ + E  G N     Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
           R+A+A  L+  P+IL  DE T+ LD Y + +V+       C+ R VI 
Sbjct: 153 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVII 199

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---VMSRIS-GYVAQQDFLI 53
           +  +GAGKTT L+A    + GLV   +G+I+ NG  I+     V++R     V +   + 
Sbjct: 38  IGANGAGKTTTLSA----IAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIF 93
Query: 54  EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLA 112
            ELTV E+L   A    D+     +L + I  +   L     R  Q+ G LSGG+++ LA
Sbjct: 94  PELTVYENLXXGAYNRKDKEGIKRDL-EWIFSLFPRL---KERLKQLGGTLSGGEQQXLA 149
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
           +   L + P++L  DEP+ GL     + V  +++++  E   ++ 
Sbjct: 150 IGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
           SG GK+TL+  L  R   +  G+IL++G  I   +   +   +   QQD ++   TV E+
Sbjct: 376 SGGGKSTLIN-LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434
Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLT 119
           +        D               + NL   +  +V   G  LSGGQ++RL++A   L 
Sbjct: 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
            P IL  DE T+ LD  S + +   L  L+ +   +I A
Sbjct: 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4    SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEELTVLE 60
            SG GK+T++  L +R    + G + L+G  I +  +  +    G V+Q+  L +  ++ E
Sbjct: 1068 SGCGKSTVVQLL-ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125
Query: 61   HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
            ++ +       R  ++ E+        I + +++L   +  +V   G  LSGGQ++R+A+
Sbjct: 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 114  AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            A  L+ +P IL  DE T+ LD+ S   V   L + A E R  I   H+
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4    SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEELTVLE 60
            SG GK+T++  L +R    + G + L+G  I +  +  +    G V+Q+  L +  ++ E
Sbjct: 1068 SGCGKSTVVQLL-ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125
Query: 61   HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
            ++ +       R  ++ E+        I + +++L   +  +V   G  LSGGQ++R+A+
Sbjct: 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 114  AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
            A  L+ +P IL  DE T+ LD+ S   V   L + A E R  I   H+
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
           + P+G+GK+TL+  +   +K   +G +      I+    + +  Y   + F     ++E+
Sbjct: 39  IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57  TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
           TVLE+L         + L       W+    E+ +   +++E L ++H    +   LSGG
Sbjct: 98  TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           Q K + +   L+T P+++  DEP  G+    A+++ N + +L  +    +   H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
           + P+G+GK+TL+  +   +K   +G +      I+    + +  Y   + F     ++E+
Sbjct: 39  IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57  TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
           TVLE+L         + L       W+    E+ +   +++E L ++H    +   LSGG
Sbjct: 98  TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           Q K + +   L+T P+++  DEP  G+    A+++ N + +L  +    +   H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 85  RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
           + ++ L + H  + + + LSGGQR+ + +A  + +E +++  DEPT+ LD  + + V++L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170
Query: 145 LKQLA-CESRIVICAIHQPTSGV 166
           L  LA  ++  V+   HQP   V
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVV 193

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEEL 56
           + PSG+GK+T+L+ L  R+     G I L+G  I +     + S+I G V+Q+  L    
Sbjct: 407 VGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQEPILFS-C 463
Query: 57  TVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKR 110
           ++ E++ + A     +T +      E+   +   + N        V   G  LSGGQ++R
Sbjct: 464 SIAENIAYGADDPSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSGGQKQR 522
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
           +A+A  LL  P+IL  DE T+ LD+ +   V   L +L     +++ A H  T
Sbjct: 523 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLST 575

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEEL 56
           + PSG+GK+T+L+ L  R+     G I L+G  I +     + S+I G V+Q+  L    
Sbjct: 376 VGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQEPILFS-C 432
Query: 57  TVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKR 110
           ++ E++ + A     +T +      E+   +   + N        V   G  LSGGQ++R
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSGGQKQR 491
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           +A+A  LL  P+IL  DE T+ LD+ +   V   L +L  + R V+   H+
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHR 541

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
           + P+G+GK+T+ AAL + +     G++LL+G P+ +     +   VA   Q+ L+   + 
Sbjct: 51  VGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 59  LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
            E++ + + +       T + +       +      +  +V  +G  LSGGQR+ +ALA 
Sbjct: 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICAIHQ 161
            L+ +P++L  D+ T+ LD+ +   V  LL +     SR V+   HQ
Sbjct: 170 ALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
           SG+GK+T+ A+L  R   + +GEIL++G  +    ++ +   VA   Q+  +   TV  +
Sbjct: 378 SGSGKSTI-ASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQRKRLALAVQ 116
           + +       R    +E    +   M+ +         + G     LSGGQR+R+A+A  
Sbjct: 437 IAYARTEQYSREQ--IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
           LL +  IL  DE T+ LD+ S   +   L +L  ++R  +   H+ ++   EK D +
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEKADEI 548

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
           + P+G+GK+TL+  +   +K   +G +      I+    + +  Y   + F     ++E+
Sbjct: 39  IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57  TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
           TVLE+L         + L       W+    E+ +   +++E L ++H    +   LSGG
Sbjct: 98  TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           Q K + +   L+T P+++  D+P  G+    A+++ N + +L  +    +   H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELT 57
           + P+GAGK+TLL  L   +     GE  L G  ++      ++R    + Q   L    +
Sbjct: 43  IGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101
Query: 58  VLEHLQFMAKL----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           V E +Q M +     + DR        + + +VM         Q     LSGG+++R+ L
Sbjct: 102 VSEVIQ-MGRAPYGGSQDR--------QALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL 152
Query: 114 A------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
           A       Q    P+ LF DEPT+ LD Y   + + LL+QL  +  + +C +
Sbjct: 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS--RISGYVAQQDFLIEELTV 58
           + P+G+GKTT++  L  R   + +G+IL++G  I +   S  R S  +  QD ++   TV
Sbjct: 387 VGPTGSGKTTIVNLL-MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445
Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQ 116
            E+L++      D               +++L   +   +  +G  LS GQR+ LA+   
Sbjct: 446 KENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 117 LLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVIC 157
            L  P+IL  DE T+ +D+ +  ++   + K +  ++ I+I 
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
           + P+G+GK+T+ AAL + +     G++LL+G P+ +     +   VA   Q+  +   ++
Sbjct: 49  VGPNGSGKSTV-AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSL 107
Query: 59  LEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALA 114
            E++ +    K TM+   T   +       +  L   +  +V  +G  LSGGQR+ +ALA
Sbjct: 108 QENIAYGLTQKPTMEE-ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 166
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
             L+ +P +L  D+ T+ LD+ S   V  LL +
Sbjct: 167 RALIRKPCVLILDDATSALDANSQLQVEQLLYE 199

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
           SG+GK+T+ A+L  R   + +G IL++G  +    ++ +   VA   Q+  +   TV  +
Sbjct: 378 SGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQRKRLALAVQ 116
           + +       R    +E    +   M+ +         I G     LSGGQR+R+A+A  
Sbjct: 437 IAYARTEEYSREQ--IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           LL +  IL  DE T+ LD+ S   +   L +L
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDEL 526

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISRT----VMSRISG---YVAQQDFL 52
           +  +G GKTT+L  L         GEI+ N G P S+     V+ R  G   Y   ++  
Sbjct: 31  LGKNGVGKTTVLKIL--------AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 53  IEELTVLEHLQFMA------KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
             EL ++  +Q++       K T++   T ++       V E L + +      + LSGG
Sbjct: 83  SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGG 142
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
             +RL +A  LL E  +   D+P++ LD     N+   +++L  +++ VI   H 
Sbjct: 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDHD 196

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLE 60
           SG+GK+T+ A L  R   +  G I L+G  +     T + R    V+Q   L  + T+  
Sbjct: 378 SGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN 435
Query: 61  HLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQL 117
           ++ + A+    R        +      +EN+  G++       + LSGGQR+R+A+A  L
Sbjct: 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           L +  +L  DE T+ LD+ S   +   L +L     +++ A
Sbjct: 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
           + P+G+GK+T+ AAL + +     G++LL+G P+ +     +   VA   Q+ L+   + 
Sbjct: 51  VGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 59  LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
            E++ + + +       T + +       +      +  +V  +G  LSGGQR+ +ALA 
Sbjct: 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
            L+ +P++L  D  T+ LD+ +   V  LL +
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLE 60
           +G+GK+T+   L +      +G+I + G  ++   R  +  I G V Q   L  E T+  
Sbjct: 55  TGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKY 111
Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLL 118
           ++ +      D        +  +   +E L       V   G  LSGG+R+R+A+A  LL
Sbjct: 112 NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171
Query: 119 TEPQILFCDEPTTGLDS 135
            +P+I+  DE T+ LDS
Sbjct: 172 KDPKIVIFDEATSSLDS 188

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNG---CPISRTVMSRISGYVA-QQDFLIEE 55
           M P+GAGK+TL   L    +  V+ GEILL+G     +S    +R   ++A Q    +  
Sbjct: 35  MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI--SGLSGGQRKRLAL 113
           +T+   L+   +  + R     E    + + +E L  +     +    G SGG++KR  +
Sbjct: 95  VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154
Query: 114 AVQLLTEPQILFCDEPTTGLD 134
              L+ EP     DE  +GLD
Sbjct: 155 LQLLVLEPTYAVLDETDSGLD 175

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           ++  LSGG+ +R+A+A  LL +    F DEP++ LD      V  ++++LA E + V+  
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 159 IH 160
            H
Sbjct: 271 EH 272

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           ++  LSGG+ +R+A+A  LL +    F DEP++ LD      V  ++++LA E + V+  
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 159 IH 160
            H
Sbjct: 285 EH 286

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 81  KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN 140
           + + R ++ L + +  +  I  LSGG+ +R A+ +  + E  +   DEP++ LD     N
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 141 VVNLLKQLACESRIVICAIHQ 161
              +++ L   ++ VIC  H 
Sbjct: 260 AAQIIRSLLAPTKYVICVEHD 280

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92  INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           ++H R   I GLSGGQ+ +L LA      P ++  DEPT  LD  S   +   LK+ 
Sbjct: 894 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92  INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           ++H R   I GLSGGQ+ +L LA      P ++  DEPT  LD  S   +   LK+ 
Sbjct: 888 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92  INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           ++H R   I GLSGGQ+ +L LA      P ++  DEPT  LD  S   +   LK+ 
Sbjct: 894 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 4   SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
           +GAGKTTLL  LN   +    G + L G    +       GY A+        TV +H+ 
Sbjct: 56  NGAGKTTLLNILNA-YEPATSGTVNLFGKXPGKV------GYSAE--------TVRQHIG 100
Query: 64  FMAKLTMDR----------------------RTTWLELNKTITRVMENLGINHRRQVQIS 101
           F++   +++                      +    E+     ++++ +G + + Q  I 
Sbjct: 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIG 160
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
            LS G+++R+ +A  L  +PQ+L  DEP  GLD
Sbjct: 161 YLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 99  QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
           +I  LSGG+ +R+A+A  LL      F DEP++ LD     N    +++L+ E + V+  
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 159 IHQ 161
            H 
Sbjct: 215 EHD 217

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQQDFLIEE--- 55
           + P+G+GKTTLL A    + GL+   G I +NG  + +     I  Y+     L E    
Sbjct: 36  LGPNGSGKTTLLRA----ISGLLPYSGNIFINGMEVRK-----IRNYIRYSTNLPEAYEI 86
Query: 56  -LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
            +TV + +    +L    R  +LE+ K +    E L    RR+  +  LS GQ   +  +
Sbjct: 87  GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL----RRK--LYKLSAGQSVLVRTS 140
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
           + L ++P+I+  DEP   +D+   + +   +K+   E  +V
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILV 181

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
           + P+GAGK+TLLA       G  +G I   G P+   S T ++    Y++QQ        
Sbjct: 32  VGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
           V  +L               + +KT T ++ +    L ++ +     + LSGG+ +R+ L
Sbjct: 90  VWHYLTLH------------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           A  +L       P  Q+L  DEP   LD    + +  +L  L+ +   ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 1   MSPSGAGKTTLLAALNKR-----VKGLVQ--GEILLNGCPISRTVMSRISGY-------- 45
           M P+G+GK+TL A L  R       G V+  G+ LL   P  R        +        
Sbjct: 33  MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 92
Query: 46  VAQQDFLIEELTVLEHLQFMAKLTMDRRT--TWLELNKTITRVMENLGINHRRQVQISGL 103
           V+ Q FL   L  +    +  + T+DR      +E    + ++ E+L     R V + G 
Sbjct: 93  VSNQFFLQTALNAVR--SYRGQETLDRFDFQDLMEEKIALLKMPEDL---LTRSVNV-GF 146
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           SGG++KR  +    + EP++   DE  +GLD  +   V + +  L    R  I   H
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 1   MSPSGAGKTTLLAALNKR-----VKGLVQ--GEILLNGCPISRTVMSRISGY-------- 45
           M P+G+GK+TL A L  R       G V+  G+ LL   P  R        +        
Sbjct: 52  MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111
Query: 46  VAQQDFLIEELTVLEHLQFMAKLTMDRRT--TWLELNKTITRVMENLGINHRRQVQISGL 103
           V+ Q FL   L  +    +  + T+DR      +E    + ++ E+L     R V + G 
Sbjct: 112 VSNQFFLQTALNAVR--SYRGQETLDRFDFQDLMEEKIALLKMPEDL---LTRSVNV-GF 165
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           SGG++KR  +    + EP++   DE  +GLD  +   V + +  L    R  I   H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142
           LSGG ++R+ +A+ LL +P +L  DEPT+ LD  +  +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
           + P+GAGK+TLLA +     G  +G I   G P+   S T ++    Y++QQ        
Sbjct: 32  VGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
           V  +L            T  + +KT T ++ +    L ++ +     + LSGG+ +R+ L
Sbjct: 90  VWHYL------------TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           A  +L       P  Q+L  D+P   LD    + +  +L  L+ +   ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 4   SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI-----SRTVMSRISGYVAQQDFLIEE 55
           SG GKTTLL  L     G  Q   GEI L+G  I     +  V  R  GY+ Q+  L   
Sbjct: 39  SGCGKTTLLRCL----AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
           LTV  ++ +   L   +  T  E  + I  ++E  GI+         LSGGQ++R ALA 
Sbjct: 95  LTVYRNIAY--GLGNGKGRTAQERQR-IEAMLELTGISELAGRYPHELSGGQQQRAALAR 151
Query: 116 QLLTEPQILFCDEPTTGLD 134
            L  +P+++  DEP + LD
Sbjct: 152 ALAPDPELILLDEPFSALD 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	8e-33
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-32
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	3e-25
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-24
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-19
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	6e-23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-21
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-21
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-19
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-18
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-10
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	5e-17
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-14
1g6h_A	257	High-affinity branched-chain amino acid transport	7e-13
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	7e-13
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	8e-13
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-12
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-11
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	6e-11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	7e-11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-09
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-08
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	4e-08
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	8e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	5e-07
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-06
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	3e-06
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	5e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-05
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	3e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  117 bits (295), Expect = 8e-33
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 16/161 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR---TVMSRISGYVAQQDFLIEEL 56
           P+GAGKTT L  ++     L++   G + + G  +      V   I  Y+ ++      +
Sbjct: 49  PNGAGKTTTLRIIS----TLIKPSSGIVTVFGKNVVEEPHEVRKLI-SYLPEEAGAYRNM 103

Query: 57  TVLEHLQFMAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
             +E+L+F+A            E+ + + R  E  G+  + + ++S  S G  ++L +A 
Sbjct: 104 QGIEYLRFVAGFYASSSS----EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
            L+  P++   DEPT+GLD  +A  V  +LKQ + E   ++
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  115 bits (290), Expect = 2e-32
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+G GKTTLL  ++      ++   GEI+ NG PI++ V  +I  ++ ++  +  +++V 
Sbjct: 43  PNGIGKTTLLKTIS----TYLKPLKGEIIYNGVPITK-VKGKI-FFLPEEIIVPRKISVE 96

Query: 60  EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           ++L+ +A L  +            I   +E++ +   ++ ++  LS G  +R+ LA  LL
Sbjct: 97  DYLKAVASLYGVKVN------KNEIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLL 149

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
              +I   D+P   +D  S + V+  + ++  E  IVI +    +       D    L  
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS----SREELSYCDVNENLHK 205

Query: 179 GGLLA 183
                
Sbjct: 206 YSTKI 210

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 97.3 bits (243), Expect = 3e-25
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 32/200 (16%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE-- 60
            +G GK+TLL  L    +  +QG+I +           +  G+V Q        +VL+  
Sbjct: 39  QNGCGKSTLLDLLLGIHR-PIQGKIEV----------YQSIGFVPQFFSSPFAYSVLDIV 87

Query: 61  ------HLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
                 H+   AK    D +           + ++ L + H  + + + LSGGQR+ + +
Sbjct: 88  LMGRSTHINTFAKPKSHDYQV--------AMQALDYLNLTHLAKREFTSLSGGQRQLILI 139

Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
           A  + +E +++  DEPT+ LD  + + V++LL  LA    + V+   HQP   V    + 
Sbjct: 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANK 198

Query: 173 VSLLAHGGLLAYHGQVSKVL 192
             LL +     + G+   +L
Sbjct: 199 TLLL-NKQNFKF-GETRNIL 216

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 97.7 bits (244), Expect = 4e-25
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 17/202 (8%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS------RISGYVAQ--QDFLIE 54
            +GAGKTTLL  LN        G + L G    +   S       I G+V+    +   E
Sbjct: 55  LNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHI-GFVSHSLLEKFQE 112

Query: 55  ELTVLEHL--QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
              V++ +       + + +       N+   ++++ +G++ + Q  I  LS G+++R+ 
Sbjct: 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEA-HQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQPTSGVFEKF 170
           +A  L+ +PQ+L  DEP  GLD  +  +++++L  L+    +  +I   H     +   F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANF 230

Query: 171 DTVSLLAHGGLLAYHGQVSKVL 192
             + LL  G  +   G V  +L
Sbjct: 231 SKILLLKDGQSIQ-QGAVEDIL 251

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 96.6 bits (241), Expect = 9e-24
 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 16/154 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           P+G GKTT    L   +    +G +      +S         Y  Q+ F   + TV ++L
Sbjct: 302 PNGIGKTTFARILVGEITA-DEGSVTPEKQILS---------YKPQRIFPNYDGTVQQYL 351

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
           +  +K  +         +     V + L ++   +  ++ LSGG+ ++L +A  L  E  
Sbjct: 352 ENASKDALSTS------SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD 405

Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +   D+P++ LD      V   +K++  E + V 
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGY-------------- 45
            +G GKTT+L  L     G +    G+   N       V+ R  G               
Sbjct: 33  KNGVGKTTVLKILA----GEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86

Query: 46  -VAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
            +  +   +E     + L+      + +    ++       V E L + +      + LS
Sbjct: 87  KIVHKIQYVE--YASKFLKGTVNEILTK----IDERGKKDEVKELLNMTNLWNKDANILS 140

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           GG  +RL +A  LL E  +   D+P++ LD     N+   +++L     +++
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 91.1 bits (227), Expect = 6e-23
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 28/203 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
           P+GAGK+TLLA +     G+   +G I   G P+   S T ++    Y++QQ        
Sbjct: 34  PNGAGKSTLLARMA----GMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA--- 114
           V  +L          +       + +  V   L ++ +     + LSGG+ +R+ LA   
Sbjct: 90  VWHYLTL-------HQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141

Query: 115 VQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT-SGVFEK 169
           +Q+        Q+L  DEP   LD    + +  +L  L+ +   ++ + H    +     
Sbjct: 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH-- 199

Query: 170 FDTVSLLAHGGLLAYHGQVSKVL 192
                LL  G +LA  G+  +VL
Sbjct: 200 AHRAWLLKGGKMLA-SGRREEVL 221

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 92.0 bits (229), Expect = 4e-22
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 24/157 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+G GKTT +  L     G+ +   G++  +           ++ Y  Q      E TV 
Sbjct: 390 PNGIGKTTFVKMLA----GVEEPTEGKVEWDL---------TVA-YKPQYIKAEYEGTVY 435

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           E L  +    ++            T +++ LGI       +  LSGG+ +R+A+A  LL 
Sbjct: 436 ELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 488

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +  I   DEP+  LD      V   ++ L  ++    
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 22/171 (12%)

Query: 3   PSGAGKTTLLAALNKRVK-----GLVQGEILLNGCPIS--RTVMSRISGYVAQQDF---- 51
           P+G GKTT +  L  ++           + ++     +  +    R+     +       
Sbjct: 125 PNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184

Query: 52  --LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
             L+ +    +  + + K  +D    + E+       ++ L + +    ++  LSGG+ +
Sbjct: 185 VDLLPKAVKGKVRELLKK--VDEVGKFEEV-------VKELELENVLDRELHQLSGGELQ 235

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           R+A+A  LL +    F DEP++ LD      V  ++++LA E + V+   H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 25/154 (16%)

Query: 3   PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
           P+G+GKTTLL A++    GL+   G I +NG  + +  +     Y     + + I  +TV
Sbjct: 38  PNGSGKTTLLRAIS----GLLPYSGNIFINGMEVRK--IRNYIRYSTNLPEAYEIG-VTV 90

Query: 59  LEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALA 114
            + +     +  L  D              +++ L +     + ++  LS GQ   +  +
Sbjct: 91  NDIVYLYEELKGLDRDL----------FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           + L ++P+I+  DEP   +D+   + +   +K+ 
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEY 174

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 3   PSGAGKTTLLAALN-------KRVKGLVQGEILL---NGCPISRTVMSRISGYVAQ---- 48
            +G GK+T L  L         R     + + ++    G  +       +   +      
Sbjct: 111 TNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170

Query: 49  QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
           Q        +   +Q + +L   R     +  + + R ++ L + +  +  I  LSGG+ 
Sbjct: 171 QYVDNIPRAIKGPVQKVGELLKLRME---KSPEDVKRYIKILQLENVLKRDIEKLSGGEL 227

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           +R A+ +  + E  +   DEP++ LD     N   +++ L   ++ VIC  H
Sbjct: 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 88.9 bits (221), Expect = 6e-21
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 24/157 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
            +G GKTTL+  L     G ++   G+ +             +S    Q+       TV 
Sbjct: 386 ENGTGKTTLIKLLA----GALKPDEGQDIPKL---------NVS-MKPQKIAPKFPGTVR 431

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
           +           +        +  T V++ L I+     ++  LSGG+ +R+A+ + L  
Sbjct: 432 QLF-------FKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI 484

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
              I   DEP+  LDS        ++++    ++   
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 82.5 bits (205), Expect = 7e-20
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 27/177 (15%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV----QGEILLNGCPISRTVMSRIS-------GYVAQQ 49
           +  SG+GK+TLL  L     GL+    +G++ L G  +  T    +S       G+V Q 
Sbjct: 36  IGASGSGKSTLLYIL-----GLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90

Query: 50  DFLIEELTVLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSG 105
            +LI ELT LE+    +  M K   + +     L       +  LG+  +   +   LSG
Sbjct: 91  HYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-------LSELGLGDKLSRKPYELSG 143

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
           G+++R+A+A  L  EP +LF DEPT  LDS +   V+++  ++      ++   H+ 
Sbjct: 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 24/157 (15%)

Query: 3   PSGAGKTTL---LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
           P+G GKTT    LA + +  +G    +I  +           ++ Y  Q      E TV 
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEG----KIEWDL---------TVA-YKPQYIKADYEGTVY 365

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
              + ++K+   +    L  N   T +++ LGI      +++ LSGG+ +R+A+A  LL 
Sbjct: 366 ---ELLSKIDASK----LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418

Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
           +  I   DEP+  LD      V   ++ L  ++    
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 22/171 (12%)

Query: 3   PSGAGKTTLLAALNKRVK-----GLVQGEILLNGCPISRTVMSRISGYVAQ--QDF---- 51
           P+G GK+T +  L  ++           + ++     +            +         
Sbjct: 55  PNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114

Query: 52  --LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
             LI +    + ++ + K     +         +  V++ L + +  + +I  LSGG+ +
Sbjct: 115 VDLIPKAVKGKVIELLKKADETGK---------LEEVVKALELENVLEREIQHLSGGELQ 165

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           R+A+A  LL      F DEP++ LD     N    +++L+ E + V+   H
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 27/206 (13%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI--SRTVMSRIS---GYVAQ----QD 50
            +G GK+TL    N    G++    G IL +  PI  SR  + ++    G V Q    Q 
Sbjct: 42  GNGVGKSTLFQNFN----GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ- 96

Query: 51  FLIEELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
            L    +V + + F    + +       E+ K +   ++  GI H +      LS GQ+K
Sbjct: 97  -LFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKK 150

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFE 168
           R+A+A  L+ EP++L  DEPT GLD    + ++ LL ++  E  I +I A H     V  
Sbjct: 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD-IDIVPL 209

Query: 169 KFDTVSLLAHGGLLAYHGQVSKVLKH 194
             D V ++  G ++   G   +V   
Sbjct: 210 YCDNVFVMKEGRVIL-QGNPKEVFAE 234

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 24/202 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQ----QDFLIEE 55
            +G+GK+TLL  +     GL+    G++L +G       + R  G   Q    Q     E
Sbjct: 41  NTGSGKSTLLQIVA----GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQ--FFAE 94

Query: 56  LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQRKRLA 112
             V + + F  K    DR     +    + + ME +G++           LSGG+++R+A
Sbjct: 95  -RVFDEVAFAVKNFYPDR-----DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA 148

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
           +A  ++ EP IL  DEP  GLD     +++ ++++     + VI   H     V    D 
Sbjct: 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDR 207

Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
           V +L  G  +   G   + L+ 
Sbjct: 208 VVVLEKGKKVF-DGTRMEFLEK 228

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 78.2 bits (192), Expect = 3e-17
 Identities = 41/155 (26%), Positives = 58/155 (37%), Gaps = 24/155 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEH 61
           P+G GK+TL+ A+               G P       R   YV    D    + +VL+ 
Sbjct: 469 PNGCGKSTLMRAIANGQVD---------GFPTQEEC--RT-VYVEHDIDGTHSDTSVLDF 516

Query: 62  LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLALAVQLLTE 120
           +      T +           I   +   G         IS LSGG + +LALA  +L  
Sbjct: 517 VFESGVGTKEA----------IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN 566

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
             IL  DEPT  LD+ +   +VN L      S  +
Sbjct: 567 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITI 601

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 39  MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN-KTITRVMENLGINHRRQ 97
           M  +      +  L+E  +  + +  +          +  L  K I      LG++    
Sbjct: 837 MMSVDNAWIPRGELVESHS--KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894

Query: 98  VQ--ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
               I GLSGGQ+ +L LA      P ++  DEPT  LD
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 25/164 (15%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLV----QGEILLNGCPISR-------TVMSRISGYVAQQ 49
           M PSG+GK+T+L  +     G +    +GE+ ++    +         +     G+V QQ
Sbjct: 37  MGPSGSGKSTMLNII-----GCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91

Query: 50  DFLIEELTVLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LS 104
             LI  LT LE+    L F  +  M       E  K     ++   +  R        LS
Sbjct: 92  FNLIPLLTALENVELPLIFKYRGAMSGE----ERRKRALECLKMAELEERFANHKPNQLS 147

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           GGQ++R+A+A  L   P I+  D+PT  LDS +   ++ LLK+L
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 23/203 (11%)

Query: 4   SGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
           SGAGK+TL+  +N     L    +G +L++G  ++            +I G + Q   L+
Sbjct: 63  SGAGKSTLIRCVN----LLERPTEGSVLVDGQELTTLSESELTKARRQI-GMIFQHFNLL 117

Query: 54  EELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
              TV  ++    +L    +     E+ + +T ++  +G+  +     S LSGGQ++R+A
Sbjct: 118 SSRTVFGNVALPLELDNTPKD----EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA 173

Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPTSGVFEKFD 171
           +A  L + P++L CD+ T+ LD  +  +++ LLK +     + I  I H+    V    D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICD 232

Query: 172 TVSLLAHGGLLAYHGQVSKVLKH 194
            V+++++G L+     VS+V  H
Sbjct: 233 CVAVISNGELIE-QDTVSEVFSH 254

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 64.1 bits (157), Expect = 7e-13
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 21/148 (14%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGY-VA---QQDFLIEE 55
           P+G+GK+TL+  +     G ++   G +      I+    + +  Y +    Q    ++E
Sbjct: 41  PNGSGKSTLINVIT----GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96

Query: 56  LTVLE------HLQFMAKL-TMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSG 105
           +TVLE           + L ++  +    +  + + +  + L    ++H    +   LSG
Sbjct: 97  MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGL 133
           GQ K + +   L+T P+++  DEP  G+
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGV 184

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 64.1 bits (157), Expect = 7e-13
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 21/140 (15%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
           P+GAGK+  L    + + G+V+   GE+ LNG  I+      R  G+V Q   L   L+V
Sbjct: 32  PTGAGKSVFL----ELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87

Query: 59  LEHLQF----MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
             ++ +    + ++  DRR         +  + E LGI H    + + LSGG+R+R+ALA
Sbjct: 88  YRNIAYGLRNVERVERDRR---------VREMAEKLGIAHLLDRKPARLSGGERQRVALA 138

Query: 115 VQLLTEPQILFCDEPTTGLD 134
             L+ +P++L  DEP + +D
Sbjct: 139 RALVIQPRLLLLDEPLSAVD 158

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS------RTVMSRISGYVAQQDFLIEEL 56
           PSG+GK+T L  LN  ++   +GEI+++G  +         V   + G V Q+  L   +
Sbjct: 58  PSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEV-GMVFQRFNLFPHM 115

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           TVL ++         R+    +       +++ +G+  +       LSGGQ +R+A+A  
Sbjct: 116 TVLNNI--TLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
           L  EP+I+  DEPT+ LD      V++++KQLA E   ++   H
Sbjct: 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 29/145 (20%)

Query: 3   PSGAGKTTLLAALNKR-VKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
           PSG+GKTT+L     R + GL +   G++ + G  ++      R  G V Q   L + +T
Sbjct: 49  PSGSGKTTIL-----RLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRK 109
           V +++ F  +    +R    E++    RV E L     R +++          LSGGQ++
Sbjct: 104 VYDNVSFGLRE---KRVPKDEMDA---RVRELL-----RFMRLESYANRFPHELSGGQQQ 152

Query: 110 RLALAVQLLTEPQILFCDEPTTGLD 134
           R+ALA  L   PQ+L  DEP   +D
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAID 177

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)

Query: 5   GAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELT 57
           GAGKTT L+A+     GLV   +G+I+ NG  I+      I+      V +   +  ELT
Sbjct: 42  GAGKTTTLSAIA----GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQ 116
           V E+L   A    D+      + + +  +         R  Q+ G LSGG+++ LA+   
Sbjct: 98  VYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153

Query: 117 LLTEPQILFCDEPTTGL 133
           L++ P++L  DEP+ GL
Sbjct: 154 LMSRPKLLMMDEPSLGL 170

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 24/141 (17%)

Query: 3   PSGAGKTTLLAALNKR-VKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
           P+GAGKT  L       + G      G ILL+G  ++          +V Q   L   + 
Sbjct: 34  PTGAGKTLFL-----ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88

Query: 58  VLEHLQF---MAKLTMDRRTTW-LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
           V ++L+F   M K+   +R        K     +E+L    R  +    LSGG+++R+AL
Sbjct: 89  VKKNLEFGMRMKKIKDPKRVLDTARDLK-----IEHLL--DRNPLT---LSGGEQQRVAL 138

Query: 114 AVQLLTEPQILFCDEPTTGLD 134
           A  L+T P+IL  DEP + LD
Sbjct: 139 ARALVTNPKILLLDEPLSALD 159

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 39/152 (25%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS-----RISGYVAQQDF-LI 53
            SG GKTTLL  L     G  Q   GEI L+G  I     +     R  GY+ Q +  L 
Sbjct: 38  ASGCGKTTLLRCL----AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ-EGVLF 92

Query: 54  EELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-------- 102
             LTV  ++ +     K    +            R+   L         IS         
Sbjct: 93  PHLTVYRNIAYGLGNGKGRTAQERQ---------RIEAML-----ELTGISELAGRYPHE 138

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           LSGGQ++R ALA  L  +P+++  DEP + LD
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALD 170

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 58.7 bits (143), Expect = 7e-11
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 30/180 (16%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-------------- 48
            SG+GK+T L  +N  ++   +G I++NG  I+          VA               
Sbjct: 40  SSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98

Query: 49  -QDF-LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQI- 100
            Q F L   +TVLE++    +  L + +            R ++ L   GI+ R Q +  
Sbjct: 99  FQHFNLWSHMTVLENVMEAPIQVLGLSKH-------DARERALKYLAKVGIDERAQGKYP 151

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
             LSGGQ++R+++A  L  EP +L  DEPT+ LD      V+ +++QLA E + ++   H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 26/146 (17%)

Query: 3   PSGAGKTTLLAALNKR-VKGL---VQGEILLNGCPISRTVMSRISGYVAQQD------F- 51
           PSGAGKTT +     R + GL     GE+  +     R V S     V  +D      F 
Sbjct: 39  PSGAGKTTFM-----RIIAGLDVPSTGELYFDD----RLVASNGKLIVPPEDRKIGMVFQ 89

Query: 52  ---LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
              L   LT  E++ F        + +  E+ K +  V + L I+H        LSG Q+
Sbjct: 90  TWALYPNLTAFENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ 146

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
           +R+ALA  L+ +P +L  DEP + LD
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLD 172

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 33/173 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS---RISGYVAQQDFLIEELTV 58
           PSG GK+T+  +L +R      GEI ++G PI   ++ +   +I G+V+Q   ++   T+
Sbjct: 36  PSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQDSAIMAG-TI 92

Query: 59  LEHLQFMAKLTMDRRTTW------------LEL-NKTITRVMENLGINHRRQVQISGLSG 105
            E+L +  +        W              + ++  T V E       R V+   +SG
Sbjct: 93  RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-------RGVK---ISG 142

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
           GQR+RLA+A   L  P+IL  DE T  LDS S + V   L  L  + R  +VI
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVI 194

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 32/153 (20%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
            SG+GK+T+      R   +  G I L+G  +        +       V+Q   L  + T
Sbjct: 377 RSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRD--YKLTNLRRHFALVSQNVHLFND-T 432

Query: 58  VLEHLQFMAKLTMDRRTTW------------LELNKTI-TRVMENLGINHRRQVQISGLS 104
           +  ++ + A+    R                  + + + T + EN G +         LS
Sbjct: 433 IANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTS---------LS 482

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           GGQR+R+A+A  LL +  +L  DE T+ LD+ S
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTES 515

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 33/172 (19%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS--RISGYVAQQDFLIEELTVL 59
            +G+GK+T+   L +      +G+I + G  +++    S   I G V Q   L  E T+ 
Sbjct: 54  HTGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIK 110

Query: 60  EHLQF------------MAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
            ++ +              K   +      L   K  T V         + ++   LSGG
Sbjct: 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALP-KKWDTIVGN-------KGMK---LSGG 159

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
           +R+R+A+A  LL +P+I+  DE T+ LDS +       ++ L  ++R  I+I
Sbjct: 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIII 210

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 50  DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
                 L+ +  L                + +     +    +   ++  ++ LSGG+R 
Sbjct: 196 LAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERI 255

Query: 110 RLALAVQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
            L LA +L        E  +L  DEPT  LD      ++ ++++   +   VI   H   
Sbjct: 256 ALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315

Query: 164 SGVFEKFDTV 173
             + +  D V
Sbjct: 316 --LKDAADHV 323

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 66/189 (34%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS--RISGYVAQQDFLIEELTVL 59
           PSGAGK+T+L  L  R   +  G I ++G  IS+ T  S     G V  QD      TVL
Sbjct: 88  PSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRSHIGVV-PQD------TVL 139

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLG-----------INHRRQVQISG------ 102
                               N TI    +N+                +   I        
Sbjct: 140 -------------------FNDTI---ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177

Query: 103 -------------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
                        LSGG+++R+A+A  +L  P I+  DE T+ LD+ +   +   L ++ 
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV- 236

Query: 150 CESR--IVI 156
           C +R  IV+
Sbjct: 237 CANRTTIVV 245

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 32/172 (18%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
            SG GK+T    L +R+   + G + ++G  I     R +   I G V+Q+  L    T+
Sbjct: 424 NSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII-GVVSQEPVLFAT-TI 480

Query: 59  LEHLQF-MAKLTMDRRTTWLEL-----------NKTITRVMENLGINHRRQVQISGLSGG 106
            E++++    +TMD     ++            ++  T V E       R  Q   LSGG
Sbjct: 481 AENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE-------RGAQ---LSGG 530

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
           Q++R+A+A  L+  P+IL  DE T+ LD+ S   V   L + A E R  IVI
Sbjct: 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVI 581

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 24/172 (13%)

Query: 3    PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
             SG GK+T++  L  R    + G + L+G  I     + + +++ G V+Q+  L +  ++
Sbjct: 1067 SSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLRAQL-GIVSQEPILFDC-SI 1123

Query: 59   LEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENL--GINHR---RQVQISGLSGGQR 108
             E++ +       R  ++ E+ +      I + +++L    N R   +  Q   LSGGQ+
Sbjct: 1124 AENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ---LSGGQK 1177

Query: 109  KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
            +R+A+A  L+ +P IL  DE T+ LD+ S   V   L + A E R  I   H
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAH 1228

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 49  QDFLIEE---LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LS 104
           +    E           +  A+ T + + + + +     +V   L +    + +    LS
Sbjct: 3   KALAREAALSKIGELASEIFAEFT-EGKYSEVVVRAEENKV--RLFVVWEGKERPLTFLS 59

Query: 105 GGQRKRLALAVQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
           GG+R  L LA +L        E  +L  DEPT  LD      ++ ++++ 
Sbjct: 60  GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 109

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 32/153 (20%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
            SG+GK+T+ + +  R   + +G IL++G  +     +  S       V+Q   L  + T
Sbjct: 377 RSGSGKSTIASLIT-RFYDIDEGHILMDGHDLRE--YTLASLRNQVALVSQNVHLFND-T 432

Query: 58  VLEHLQF--MAKLTMDRRTTWLEL-----------NKTITRVMENLGINHRRQVQISGLS 104
           V  ++ +    + + ++      +           N   T + EN G+          LS
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVL---------LS 482

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           GGQR+R+A+A  LL +  IL  DE T+ LD+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES 515

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 43/155 (27%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLI----- 53
            +G+GK+TLL+A  + +    +GEI ++G                  V  Q   I     
Sbjct: 55  RTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFG--VIPQKVFIFSGTF 110

Query: 54  ------------EEL-TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI 100
                       +E+  V + +    +  +++    L+       +++  G         
Sbjct: 111 RKNLDPNAAHSDQEIWKVADEVGL--RSVIEQFPGKLD-----FVLVDG-GCV------- 155

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
             LS G ++ + LA  +L++ +IL  DEP+  LD 
Sbjct: 156 --LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
           +GLSGGQR+R+A+A  L+  P+IL  DE T+ LD  S + ++  + ++ C+ R  I+I
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIII 200

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
           LSGGQR+ +ALA  L+ +P++L  D  T+ LD+ +
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 42  ISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS 101
                 Q     + + +++     A    D   +++EL K     +          + I 
Sbjct: 224 FGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPN----GVLTID 279

Query: 102 GLSGGQRKRLALA-------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
            LSGG++  +AL+         +    + +  DEPT  LD      +  + +++    ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 155 VI 156
           +I
Sbjct: 340 II 341

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 31/146 (21%)

Query: 3   PSGAGKTTLLAALNKR-VKGL---VQGEILLNG------CPISRTV-MSRISGYVAQQDF 51
           PSG+GK+TLL       + G+     G+I  +        P  R V +      V Q   
Sbjct: 37  PSGSGKSTLL-----YTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL------VFQNWA 85

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
           L   +TV +++ F  +L   R+    E++K +  V + L I+    R   Q   LSGGQ+
Sbjct: 86  LYPHMTVYKNIAFPLEL---RKAPREEIDKKVREVAKMLHIDKLLNRYPWQ---LSGGQQ 139

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
           +R+A+A  L+ EP++L  DEP + LD
Sbjct: 140 QRVAIARALVKEPEVLLLDEPLSNLD 165

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
             LSGGQ++RL++A   L  P IL  DE T+ LD  S
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 31/146 (21%)

Query: 3   PSGAGKTTLLAALNKR-VKGL---VQGEILLNGC------PISRTV-MSRISGYVAQQDF 51
           PSG GKTT L       + G+     GEI  +        P  R V M      V Q   
Sbjct: 37  PSGCGKTTTL-----LMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM------VFQNYA 85

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
           L   +TV E++ F  +    RR +  E+ K +  +   L I++   R+  Q   LSGGQ+
Sbjct: 86  LYPHMTVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDNLLDRKPTQ---LSGGQQ 139

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
           +R+ALA  L+ +P++L  DEP + LD
Sbjct: 140 QRVALARALVKQPKVLLFDEPLSNLD 165

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 31/146 (21%)

Query: 3   PSGAGKTTLLAALNKR-VKGL---VQGEILLNGC------PISRTV-MSRISGYVAQQDF 51
           PSG GKTT L     R + GL    +G I           P  R + M      V Q   
Sbjct: 45  PSGCGKTTTL-----RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM------VFQSYA 93

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
           +   +TV E++ F  K+   ++    E++K +    E L I     R   Q   LSGGQR
Sbjct: 94  VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQ---LSGGQR 147

Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
           +R+A+A  ++ EP +L  DEP + LD
Sbjct: 148 QRVAVARAIVVEPDVLLMDEPLSNLD 173

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 33/150 (22%)

Query: 3   PSGAGKTTLLAALNKR-VKGL---VQGEILLNGCPISRTV-MSRISGYVAQQD------F 51
           PSG GKTT L     R + GL    +G+I +      + V       +V  +D      F
Sbjct: 37  PSGCGKTTTL-----RMIAGLEEPSRGQIYIGD----KLVADPEKGIFVPPKDRDIAMVF 87

Query: 52  ----LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLS 104
               L   +TV +++ F  KL   R+    E+++ +  V E LG+     R+  +   LS
Sbjct: 88  QSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRE---LS 141

Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
           GGQR+R+AL   ++ +PQ+   DEP + LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 60/224 (26%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
             G GK++LL+AL   +   V+G + + G          ++ YV QQ + I+  ++ E++
Sbjct: 39  QVGCGKSSLLSALLAEMD-KVEGHVAIKG---------SVA-YVPQQAW-IQNDSLRENI 86

Query: 63  QFMAKLTMDRRTTWLELNKTI-----TRVMENL-----------GINHRRQVQISGLSGG 106
            F  +L              I        +E L           G+N         LSGG
Sbjct: 87  LFGCQLEEPY------YRSVIQACALLPDLEILPSGDRTEIGEKGVN---------LSGG 131

Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSA----NNVVNLLKQLACESRIVICAIHQP 162
           Q++R++LA  + +   I   D+P + +D++       NV+     L   ++  I   H  
Sbjct: 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILVTHSM 189

Query: 163 TSGVFEKFDTVSLLAHGG---------LLAYHGQVSKVLKHFAK 197
           +     + D + +++ G          LLA  G  ++ L+ +A 
Sbjct: 190 S--YLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.94
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.93
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.92
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.92
2og2_A	359	Putative signal recognition particle receptor; nuc	99.92
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.91
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.91
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.89
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.88
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.87
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.86
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.85
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.84
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.83
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.82
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.82
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.81
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.81
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.79
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.79
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.78
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.78
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.77
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.77
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.76
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.76
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.75
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.73
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.72
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.72
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.72
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.72
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.7
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.69
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.65
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.65
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.64
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.63
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.61
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.56
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.56
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.53
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.53
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.53
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.5
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.49
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.45
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.4
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.39
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.38
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.37
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.35
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.31
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.3
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.24
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.23
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.13
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.12
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.1
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.1
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.99
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.97
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.96
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.95
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.91
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.81
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.74
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.72
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.62
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.58
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.56
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.47
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.44
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.38
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.36
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.34
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.33
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.19
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.19
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.16
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.15
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.12
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.11
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.09
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.09
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.06
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.0
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.99
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.97
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.97
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.91
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.85
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.83
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.82
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.79
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.77
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.77
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.75
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.71
3bos_A	242	Putative DNA replication factor; P-loop containing	97.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.6
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.57
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.56
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.55
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.52
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.52
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.5
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.48
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.47
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.44
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.43
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.38
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.3
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.29
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.29
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.28
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.27
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.24
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.19
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.14
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.12
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.09
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.08
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.07
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.05
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.02
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.94
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.89
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.83
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.83
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.81
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.76
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.76
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.76
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.73
1via_A	175	Shikimate kinase; structural genomics, transferase	96.69
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.68
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.63
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.62
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.61
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.6
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.51
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.46
3io5_A	333	Recombination and repair protein; storage dimer, i	96.46
3co5_A	143	Putative two-component system transcriptional RES	96.41
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.4
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.36
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.36
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.31
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.3
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.3
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.28
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.28
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.27
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.27
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.24
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.23
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.22
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.22
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.21
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.19
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.19
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.17
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.16
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.16
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.15
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.15
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.14
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.14
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.12
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.12
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.11
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.09
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.08
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.08
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.07
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.07
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.04
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.03
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.02
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.0
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.0
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.99
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.99
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.99
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.98
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.98
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.95
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.94
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.93
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.92
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.89
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.86
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.85
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.85
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.83
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.82
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.8
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.78
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.77
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.77
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.76
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.73
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.73
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.72
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.71
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.71
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.7
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.69
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.69
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.67
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.66
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.65
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.65
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.65
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.65
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.64
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.6
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.59
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.59
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.57
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.57
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.57
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.56
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.56
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.54
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.54
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.52
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.51
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.51
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.5
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.49
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.47
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.47
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.45
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.44
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.44
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.44
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.44
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.42
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.41
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.41
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.4
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.39
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.38
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.38
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.38
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.38
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.38
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.36
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.34
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.33
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.33
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.32
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.28
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.27
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.27
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.25
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.23
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.21
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.19
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.18
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.18
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.16
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.1
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.08
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.03
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.03
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.99
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.91
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.84
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.81
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.81
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.78
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.76
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.73
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.72
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.71
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.67
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.6
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.57
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.53
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.49
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.48
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.45
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.38
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.36
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.34
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.36
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.28
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.25
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.2
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.19
3ice_A	422	Transcription termination factor RHO; transcriptio	94.15
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.12
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.1
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.08
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.0
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.98
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.98
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.95
1wxq_A	397	GTP-binding protein; structural genomics, riken st	93.94
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.93
3pvs_A	447	Replication-associated recombination protein A; ma	93.9
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.9
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	93.89
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.89
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.84
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.83
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.75
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	93.7
2qgz_A	308	Helicase loader, putative primosome component; str	93.64
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.63
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.61
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	93.61
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.57
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	93.53
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.5
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.45
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	93.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	93.43
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	93.4
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	93.38
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.38
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.36

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=5.9e-55  Score=367.07  Aligned_cols=187  Identities=27%  Similarity=0.449  Sum_probs=168.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...      ..++.+|||||++.+++.+||+||+.++.....   .
T Consensus        60 iGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~  135 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---T  135 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---C
T ss_pred             EcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---C
Confidence            69999999999999999998 7999999999998642      134679999999999999999999999865432   2


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ...+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.
T Consensus       136 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~  215 (366)
T 3tui_C          136 PKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL  215 (366)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999754 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||++ +.+..+|||+++|++ |++++.|++++++.
T Consensus       216 Tii~vTHdl-~~~~~~aDrv~vl~~-G~iv~~g~~~ev~~  253 (366)
T 3tui_C          216 TILLITHEM-DVVKRICDCVAVISN-GELIEQDTVSEVFS  253 (366)
T ss_dssp             EEEEEESCH-HHHHHHCSEEEEEET-TEEEECCBHHHHHS
T ss_pred             EEEEEecCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            999999997 478899999999997 99999999998864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.8e-54  Score=366.04  Aligned_cols=187  Identities=27%  Similarity=0.390  Sum_probs=169.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+||.+||+||+.|+.....   ....+.
T Consensus        35 lGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~  110 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVI  110 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHH
T ss_pred             EcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence            69999999999999999998 7999999999998643 334679999999999999999999999876542   234456


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus       111 ~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v  190 (381)
T 3rlf_A          111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  190 (381)
T ss_dssp             HHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999765 9999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||.. ++..+|||+++|++ |+++..|++++++.
T Consensus       191 THd~~-ea~~~aDri~vl~~-G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          191 THDQV-EAMTLADKIVVLDA-GRVAQVGKPLELYH  223 (381)
T ss_dssp             CSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             ECCHH-HHHHhCCEEEEEEC-CEEEEEeCHHHHHh
Confidence            99974 78999999999998 99999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=3.3e-54  Score=344.58  Aligned_cols=188  Identities=27%  Similarity=0.358  Sum_probs=160.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++....       .++.+||+||++.+++.+||+||+.++........
T Consensus        37 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~  115 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA  115 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSC
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccC
Confidence            69999999999999999998 79999999999985421       12359999999999999999999998765432112


Q ss_pred             ccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          74 TTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                      .......+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ 
T Consensus       116 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  195 (235)
T 3tif_A          116 MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED  195 (235)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            2334456778899999999875 49999999999999999999999999999999999999999999999999999765 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      |.|+|++||++.  +..+||++++|++ |+++..++++++.
T Consensus       196 g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~~~~  233 (235)
T 3tif_A          196 GKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLRGFD  233 (235)
T ss_dssp             CCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC---
T ss_pred             CCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChhhhc
Confidence            999999999974  4689999999998 8998888877653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.9e-54  Score=351.13  Aligned_cols=187  Identities=28%  Similarity=0.380  Sum_probs=164.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++..     ..+++.+|||||++. .++.+||+||+.|+.....   .
T Consensus        40 iGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~  115 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK---L  115 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC---C
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC---C
Confidence            69999999999999999998 799999999999842     124567999999973 4447899999999865432   2


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~  153 (197)
                      ...+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ ++|.
T Consensus       116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~  195 (275)
T 3gfo_A          116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI  195 (275)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence            344556789999999999999999999999999999999999999999999999999999999999999999997 5699


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||++. .+..+||++++|++ |++++.|++++++.
T Consensus       196 tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          196 TIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKEVFA  233 (275)
T ss_dssp             EEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHHHHTH
T ss_pred             EEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            9999999985 68899999999987 99999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.5e-54  Score=364.27  Aligned_cols=187  Identities=25%  Similarity=0.354  Sum_probs=165.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC----Cc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~----~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++    .. ...++.+|||||++.+||.+||+||+.|+.....   ..
T Consensus        36 lGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~  111 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GR  111 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CC
T ss_pred             ECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CC
Confidence            59999999999999999998 7999999999987    22 2335679999999999999999999998754322   12


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRI  154 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~  154 (197)
                      ..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++. +.|.|
T Consensus       112 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t  191 (359)
T 3fvq_A          112 TAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS  191 (359)
T ss_dssp             SHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence            33456789999999999999999999999999999999999999999999999999999999999999888765 46899


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|++|||.. ++..+|||+++|++ |+++..|+++++..
T Consensus       192 vi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~el~~  228 (359)
T 3fvq_A          192 AVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPHELYR  228 (359)
T ss_dssp             EEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             EEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHHHHHh
Confidence            999999974 78999999999997 99999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-53  Score=346.68  Aligned_cols=187  Identities=27%  Similarity=0.379  Sum_probs=164.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------------TVMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++..                ..+++.+|||||++.+++.+||+||+.+
T Consensus        38 iG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  116 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME  116 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHh
Confidence            69999999999999999998 799999999998851                1234569999999999999999999998


Q ss_pred             HH-HccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235          65 MA-KLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV  142 (197)
Q Consensus        65 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~  142 (197)
                      +. ....   .......+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus       117 ~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~  193 (262)
T 1b0u_A          117 APIQVLG---LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL  193 (262)
T ss_dssp             HHHHTTC---CCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             hHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            64 3221   1223345678899999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         143 NLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       143 ~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++|++++++|.|||++||+.. .+..+||++++|++ |+++..|++++++.
T Consensus       194 ~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          194 RIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPEQVFG  242 (262)
T ss_dssp             HHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            999999877899999999974 78889999999987 89999999988764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.5e-53  Score=345.75  Aligned_cols=187  Identities=28%  Similarity=0.439  Sum_probs=164.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--cc---cccceEEEEecCCCCCCCCCHHHHHHHHH-HccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RT---VMSRISGYVAQQDFLIEELTVLEHLQFMA-KLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++.  ..   .+++.++||||++.+++.+||+||+.++. ....   .
T Consensus        56 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~---~  131 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK---W  131 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC---C
T ss_pred             EcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC---C
Confidence            69999999999999999998 79999999999984  11   23456999999999999999999999864 3221   1


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      ......+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.|
T Consensus       132 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t  211 (263)
T 2olj_A          132 PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT  211 (263)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence            22334567889999999999999999999999999999999999999999999999999999999999999999877999


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++||+.. .+..+||++++|++ |++++.|++++++.
T Consensus       212 vi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  248 (263)
T 2olj_A          212 MVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPEDLFD  248 (263)
T ss_dssp             EEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             EEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            999999974 78889999999987 89988999988764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.6e-53  Score=357.97  Aligned_cols=187  Identities=25%  Similarity=0.379  Sum_probs=167.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|.++|+++... ..++.+|||||++.+|+.+||+||+.|+.....   ......
T Consensus        47 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~  122 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEM  122 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 345679999999999999999999999765432   123345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus       123 ~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v  202 (355)
T 1z47_A          123 DARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV  202 (355)
T ss_dssp             HHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||. +++..+||++++|++ |+++..|++++++.
T Consensus       203 THd~-~~a~~~adri~vl~~-G~i~~~g~~~~l~~  235 (355)
T 1z47_A          203 THDQ-EEALEVADRVLVLHE-GNVEQFGTPEEVYE  235 (355)
T ss_dssp             CSCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             CCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9997 478899999999987 99999999998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3e-53  Score=342.82  Aligned_cols=188  Identities=25%  Similarity=0.405  Sum_probs=165.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...  .+++.+||+||++.+++.+||+||+.++.....   .....
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~  122 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSE  122 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHH
Confidence            59999999999999999998 7999999999998532  245679999999999999999999998754321   11223


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus       123 ~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiiv  202 (256)
T 1vpl_A          123 IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS  202 (256)
T ss_dssp             HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            34678899999999999999999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++. .+..+||++++|++ |++++.|+++++...
T Consensus       203 tHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~~  236 (256)
T 1vpl_A          203 SHNML-EVEFLCDRIALIHN-GTIVETGTVEELKER  236 (256)
T ss_dssp             ECCHH-HHTTTCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             cCCHH-HHHHHCCEEEEEEC-CEEEEecCHHHHHHh
Confidence            99974 67888999999987 899889999887653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.5e-53  Score=357.80  Aligned_cols=187  Identities=28%  Similarity=0.381  Sum_probs=167.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+.....   ....+.
T Consensus        35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~  110 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEI  110 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHH
T ss_pred             ECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999998 7999999999998542 234679999999999999999999999865432   123345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|++
T Consensus       111 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v  190 (362)
T 2it1_A          111 DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV  190 (362)
T ss_dssp             HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            678899999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||.. ++..+||++++|++ |+++..|++++++.
T Consensus       191 THd~~-~a~~~adri~vl~~-G~i~~~g~~~~~~~  223 (362)
T 2it1_A          191 THDQA-EALAMADRIAVIRE-GEILQVGTPDEVYY  223 (362)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99974 78899999999997 99999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=3.4e-53  Score=358.44  Aligned_cols=187  Identities=27%  Similarity=0.382  Sum_probs=166.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------c-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------T-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++..      . ..++.+|||||++.+|+.+||+||+.|+.....   
T Consensus        35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---  110 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---  110 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---
T ss_pred             ECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---
Confidence            59999999999999999998 799999999998743      1 234679999999999999999999999865432   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      ......++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |
T Consensus       111 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  190 (372)
T 1g29_1          111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG  190 (372)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            123345578899999999999999999999999999999999999999999999999999999999999999999765 8


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++|||. +++..+||++++|++ |+++..|++++++.
T Consensus       191 ~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~~l~~  229 (372)
T 1g29_1          191 VTTIYVTHDQ-VEAMTMGDRIAVMNR-GVLQQVGSPDEVYD  229 (372)
T ss_dssp             CEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             CEEEEECCCH-HHHHHhCCEEEEEeC-CEEEEeCCHHHHHh
Confidence            9999999997 478899999999987 99999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-53  Score=358.10  Aligned_cols=187  Identities=27%  Similarity=0.372  Sum_probs=166.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+.....   ....+.
T Consensus        35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~  110 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEV  110 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHT
T ss_pred             EcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999998 7999999999998543 234679999999999999999999998754321   122233


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus       111 ~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v  190 (359)
T 2yyz_A          111 EKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV  190 (359)
T ss_dssp             THHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            467899999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||.. ++..+||++++|++ |+++..|++++++.
T Consensus       191 THd~~-~~~~~adri~vl~~-G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          191 THDQA-EAMTMASRIAVFNQ-GKLVQYGTPDEVYD  223 (359)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             cCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99974 78899999999987 99999999998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-53  Score=341.57  Aligned_cols=185  Identities=27%  Similarity=0.434  Sum_probs=163.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||+||+.++.....     ....
T Consensus        30 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-----~~~~  103 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE-----RVER  103 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC-----HHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC-----CchH
Confidence            59999999999999999998 7999999999998532 335679999999999999999999988643211     1122


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|+|++
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v  183 (240)
T 2onk_A          104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV  183 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            567889999999999999999999999999999999999999999999999999999999999999999754 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. .+..+||++++|++ |+++..|++++++.
T Consensus       184 tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~  216 (240)
T 2onk_A          184 THDLI-EAAMLADEVAVMLN-GRIVEKGKLKELFS  216 (240)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            99974 68899999999987 89988999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.9e-53  Score=357.83  Aligned_cols=187  Identities=28%  Similarity=0.395  Sum_probs=166.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||||+|+|+++ |++|+|.++|+++..      ...++.+|||||++.+|+.+||+||+.|+.....   .
T Consensus        37 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~  112 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---M  112 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---C
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---C
Confidence            59999999999999999998 799999999998743      2345679999999999999999999998754321   2


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ......+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.
T Consensus       113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  192 (353)
T 1oxx_K          113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV  192 (353)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            23345678999999999999999999999999999999999999999999999999999999999999999999754 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+|++|||.. ++..+||++++|++ |+++..|++++++.
T Consensus       193 tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          193 TLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPEDLYD  230 (353)
T ss_dssp             EEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9999999974 78899999999987 99999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=4.8e-53  Score=341.95  Aligned_cols=187  Identities=22%  Similarity=0.309  Sum_probs=162.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHc-cCCc---
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKL-TMDR---   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~~~---   72 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...    ..++.++|+||++.+++.+||.||+.++... ....   
T Consensus        39 iG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~  117 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS  117 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccc
Confidence            59999999999999999998 7999999999998532    1245699999999999999999999886432 1110   


Q ss_pred             ------cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          73 ------RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        73 ------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                            ........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~  197 (257)
T 1g6h_A          118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL  197 (257)
T ss_dssp             HHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence                  01122345678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK  190 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~  190 (197)
                      +++++|.|||++||+.. .+..+||++++|++ |++++.|++++
T Consensus       198 ~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~  239 (257)
T 1g6h_A          198 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGEE  239 (257)
T ss_dssp             HHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESHH
T ss_pred             HHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHHH
Confidence            99877999999999985 67889999999987 88888898888

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=6.9e-53  Score=334.70  Aligned_cols=180  Identities=27%  Similarity=0.369  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MS-RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++....      .+ +.++|+||++.+++.+||.||+.++.....   
T Consensus        36 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---  111 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---  111 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---
Confidence            59999999999999999998 79999999999985321      12 569999999999999999999998754332   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++++|.
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~  191 (224)
T 2pcj_A          112 KPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT  191 (224)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            12233456788999999999999999999999999999999999999999999999999999999999999999987799


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      |+|++||+.. .+ .+||++++|++ |++++.|+
T Consensus       192 tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~  222 (224)
T 2pcj_A          192 SIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT  222 (224)
T ss_dssp             EEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred             EEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence            9999999964 45 89999999987 88888774

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=4.1e-53  Score=357.59  Aligned_cols=187  Identities=26%  Similarity=0.333  Sum_probs=160.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+.....   ......
T Consensus        43 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~  118 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEI  118 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHH
T ss_pred             ECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence            59999999999999999998 7999999999998543 234679999999999999999999998643321   223345


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus       119 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v  198 (372)
T 1v43_A          119 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV  198 (372)
T ss_dssp             HHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||.. ++..+||++++|++ |+++..|++++++.
T Consensus       199 THd~~-~a~~~adri~vl~~-G~i~~~g~~~~l~~  231 (372)
T 1v43_A          199 THDQV-EAMTMGDRIAVMNR-GQLLQIGSPTEVYL  231 (372)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            99974 78899999999997 99999999998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=4.4e-53  Score=354.78  Aligned_cols=184  Identities=27%  Similarity=0.374  Sum_probs=164.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||||+|+|+++ |++|+|.++|+++... ..++.+|||||++.+|+.+||+||+.|+.......   . . 
T Consensus        32 lGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~-~-  105 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D-P-  105 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C-H-
T ss_pred             ECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC---H-H-
Confidence            59999999999999999998 7999999999998542 33567999999999999999999999976532211   1 1 


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~  158 (197)
                       +++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++
T Consensus       106 -~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v  184 (348)
T 3d31_A          106 -KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (348)
T ss_dssp             -HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence             6788999999999999999999999999999999999999999999999999999999999999999975 48999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||. +++..+||++++|++ |+++..|++++++.
T Consensus       185 THd~-~~~~~~adri~vl~~-G~i~~~g~~~~~~~  217 (348)
T 3d31_A          185 THDQ-TEARIMADRIAVVMD-GKLIQVGKPEEIFE  217 (348)
T ss_dssp             ESCH-HHHHHHCSEEEEESS-SCEEEEECHHHHHS
T ss_pred             eCCH-HHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            9997 478899999999987 89999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-52  Score=336.45  Aligned_cols=186  Identities=24%  Similarity=0.374  Sum_probs=161.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++....    .++.++|+||++.+++.+||+||+.++.....    ..
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~  112 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DK  112 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CS
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CH
Confidence            59999999999999999998 79999999999985321    23459999999999999999999988532111    11


Q ss_pred             HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ....+.+.++++.++ +.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+
T Consensus       113 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tv  192 (240)
T 1ji0_A          113 EGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI  192 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            233467788999995 9888999999999999999999999999999999999999999999999999999998778999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus       193 i~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          193 LLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASELLD  228 (240)
T ss_dssp             EEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHHT
T ss_pred             EEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhc
Confidence            99999974 68899999999987 88888898887753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=6.3e-53  Score=342.76  Aligned_cols=185  Identities=30%  Similarity=0.373  Sum_probs=163.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...   .+++.++|++|++.+++.+||.||+.++.....     ..
T Consensus        43 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~  116 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GS  116 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----ST
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cH
Confidence            69999999999999999998 7999999999998642   234568999999998888999999998654321     11


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                      ...+++.++++.+++.+..++++.+||||||||++|||||+.      +|++|||||||+|||+.++..++++|++++++
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence            234678899999999999999999999999999999999999      99999999999999999999999999999866


Q ss_pred             -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       +.|+|++||+. +.+..+||++++|++ |++++.|++++++.
T Consensus       197 ~~~tvi~vtHdl-~~~~~~~d~v~vl~~-G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          197 EPLAVCCVLHDL-NLAALYADRIMLLAQ-GKLVACGTPEEVLN  237 (266)
T ss_dssp             SSEEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHHHHCC
T ss_pred             CCCEEEEEEcCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHhC
Confidence             56999999997 478889999999997 99999999988753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=4.5e-52  Score=337.79  Aligned_cols=187  Identities=24%  Similarity=0.354  Sum_probs=162.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++....+++.+||+||++ .+++.+||+||+.++.... ...   ...
T Consensus        39 iG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~---~~~  113 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPD---RDP  113 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTT---SCS
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCH---HHH
Confidence            59999999999999999998 79999999999885433456799999996 5667789999999864321 111   112


Q ss_pred             HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          80 NKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        80 ~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                      .+++.++++.+++.  +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||+
T Consensus       114 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~  193 (266)
T 2yz2_A          114 VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL  193 (266)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            35688999999999  8899999999999999999999999999999999999999999999999999999877899999


Q ss_pred             EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +||++. .+..+||++++|++ |+++..|++++++..
T Consensus       194 vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~~  228 (266)
T 2yz2_A          194 ISHDIE-TVINHVDRVVVLEK-GKKVFDGTRMEFLEK  228 (266)
T ss_dssp             ECSCCT-TTGGGCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             EeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhcC
Confidence            999975 67889999999987 889889999887653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=3.1e-51  Score=329.79  Aligned_cols=181  Identities=25%  Similarity=0.346  Sum_probs=159.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |+ |+|.++|.++..   ..+++.++|+||++.+++.+||+||+.++....    ..  
T Consensus        32 iG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~--  103 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK----TR--  103 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST----TC--
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC----Cc--
Confidence            59999999999999999998 68 999999998743   234566999999999999999999998752111    11  


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ-------ILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~-------llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                        .+.+.++++.+++.+..++++.+||||||||++|||||+.+|+       +|||||||+|||+.++..+.++|+++++
T Consensus       104 --~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~  181 (249)
T 2qi9_C          104 --TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ  181 (249)
T ss_dssp             --HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence              3568899999999999999999999999999999999999999       9999999999999999999999999987


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus       182 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          182 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREEVLT  222 (249)
T ss_dssp             TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHSC
T ss_pred             CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence            7899999999974 67899999999987 88888898887753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-51  Score=336.34  Aligned_cols=189  Identities=25%  Similarity=0.343  Sum_probs=157.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c---ccccceEEEEecCCCC--CCCCCHHHHHHHHHHccC-Cc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R---TVMSRISGYVAQQDFL--IEELTVLEHLQFMAKLTM-DR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~---~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~~~~-~~   72 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++.  .   ..+++.++|+||++.+  .+.+||+||+.++..... ..
T Consensus        53 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~  131 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY  131 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-------
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccc
Confidence            69999999999999999998 79999999999875  2   2245679999999754  345799999987531100 00


Q ss_pred             cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                      ........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|
T Consensus       132 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g  211 (279)
T 2ihy_A          132 QDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY  211 (279)
T ss_dssp             --CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence            00112335678899999999999999999999999999999999999999999999999999999999999999997668


Q ss_pred             CEE--EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         153 RIV--ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       153 ~~i--ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      .||  |++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus       212 ~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~  251 (279)
T 2ihy_A          212 PTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVEDIL  251 (279)
T ss_dssp             TTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHHHHC
T ss_pred             CEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHh
Confidence            899  99999974 67889999999987 8998889888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=8.9e-51  Score=327.44  Aligned_cols=186  Identities=23%  Similarity=0.251  Sum_probs=152.5

Q ss_pred             CCCCCCcHHHHHHHHhcC--cCCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~--~~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+  ++ |++|+|.++|.++....   . ++.++|+||++.+++.+||.||+.+..........
T Consensus        35 ~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  113 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV  113 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccC
Confidence            599999999999999998  56 79999999999985421   1 23489999999999999999999886431100001


Q ss_pred             cHHHHHHHHHHHHHHcCC-cccccccCCC-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          75 TWLELNKTITRVMENLGI-NHRRQVQISG-LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~-LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                      ......+++.++++.+++ .+..++++.+ ||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|
T Consensus       114 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  193 (250)
T 2d2e_A          114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN  193 (250)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT
T ss_pred             CHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            122334678899999999 5788999999 99999999999999999999999999999999999999999999997678


Q ss_pred             CEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChh
Q psy4235         153 RIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVS  189 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~  189 (197)
                      .|||++||+.. .+..+ ||++++|++ |+++..|+++
T Consensus       194 ~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~  229 (250)
T 2d2e_A          194 FGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGPE  229 (250)
T ss_dssp             CEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESHH
T ss_pred             CEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCHH
Confidence            99999999975 66777 599999987 8898889887

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1e-50  Score=330.55  Aligned_cols=188  Identities=24%  Similarity=0.357  Sum_probs=155.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...   .+++.++||||++.+|+ .||+||+.++...... .....
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~  128 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITA  128 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHH
Confidence            59999999999999999998 7999999999998532   23456999999999887 5999999875321110 00000


Q ss_pred             HHHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy4235          77 LELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESR  153 (197)
Q Consensus        77 ~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~  153 (197)
                      ......+.++++.+  ++....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ ++.
T Consensus       129 ~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~  208 (271)
T 2ixe_A          129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR  208 (271)
T ss_dssp             HHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred             HHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence            11123356778888  788888999999999999999999999999999999999999999999999999999865 489


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |||++||++. .+ ..||++++|++ |+++..|++++++.
T Consensus       209 tviivtHd~~-~~-~~~d~v~~l~~-G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          209 TVLLITQQLS-LA-ERAHHILFLKE-GSVCEQGTHLQLME  245 (271)
T ss_dssp             EEEEECSCHH-HH-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             EEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            9999999974 45 45999999987 89989999988764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=7e-50  Score=322.69  Aligned_cols=178  Identities=25%  Similarity=0.329  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|.          +++.++|+||++.+++.+||.||+.++...... ........
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  105 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIHR-PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD  105 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSSC-CSEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence            59999999999999999998 7999998          235689999999999999999999986432100 00011233


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      .+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v  185 (253)
T 2nq2_C          106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT  185 (253)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            567889999999999999999999999999999999999999999999999999999999999999999876 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ||+.. .+..+||++++|++ |+ ++.|+++++.
T Consensus       186 tHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~~~~  216 (253)
T 2nq2_C          186 THQPN-QVVAIANKTLLLNK-QN-FKFGETRNIL  216 (253)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TE-EEEEEHHHHC
T ss_pred             ecCHH-HHHHhCCEEEEEeC-Ce-EecCCHHHHh
Confidence            99974 67899999999998 77 7888887764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.2e-49  Score=323.64  Aligned_cols=190  Identities=22%  Similarity=0.226  Sum_probs=157.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc-CCCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHH-c---cCC
Q psy4235           1 MSPSGAGKTTLLAALNKRV-KGLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAK-L---TMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~-~~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~---~~~   71 (197)
                      +||||||||||+|+|+|+. .+|++|+|.++|.++...   .. ++.++|+||++.+++.+||.||+.+... .   ...
T Consensus        52 ~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~  131 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ  131 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhcc
Confidence            5999999999999999984 126899999999987532   11 2348999999999999999999987542 1   111


Q ss_pred             ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .........+++.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||+|||+.+++.++++|++++
T Consensus       132 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~  211 (267)
T 2zu0_C          132 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR  211 (267)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            1112233456788999999996 57888887 599999999999999999999999999999999999999999999997


Q ss_pred             hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHHH
Q psy4235         150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      ++|.|||++||+.. .+..+ ||++++|++ |+++..|+++++.
T Consensus       212 ~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~~~~  253 (267)
T 2zu0_C          212 DGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFTLVK  253 (267)
T ss_dssp             CSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECTTHHH
T ss_pred             hcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCHHHHh
Confidence            67899999999974 56665 899999987 8998999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=7.7e-50  Score=321.43  Aligned_cols=178  Identities=25%  Similarity=0.432  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.++...   .+++.++|+||++.+|+ .||+||+.++..     ...  
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~--  111 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS--  111 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC--
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC--
Confidence            59999999999999999998 7999999999998542   24567999999998887 599999987521     111  


Q ss_pred             HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.++++.+++.+.           .++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus       112 --~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~  189 (247)
T 2ff7_A          112 --VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH  189 (247)
T ss_dssp             --HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence              1345566666666544           345568999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ ++.|+|++||++. .+ ..||++++|++ |++++.|++++++.
T Consensus       190 ~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~l~~  232 (247)
T 2ff7_A          190 KIC-KGRTVIIIAHRLS-TV-KNADRIIVMEK-GKIVEQGKHKELLS  232 (247)
T ss_dssp             HHH-TTSEEEEECSSGG-GG-TTSSEEEEEET-TEEEEEECHHHHHT
T ss_pred             HHc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            995 5899999999974 45 56999999987 89989999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=7.8e-50  Score=329.93  Aligned_cols=188  Identities=24%  Similarity=0.387  Sum_probs=149.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.+|||||++.+|+. ||+||+.++............
T Consensus        86 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~  163 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAA  163 (306)
T ss_dssp             ESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHH
Confidence            69999999999999999998 7999999999998643   356779999999999865 999999986422110000000


Q ss_pred             HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      .....+.+.++.+  |++....+++.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+
T Consensus       164 ~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tv  242 (306)
T 3nh6_A          164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTT  242 (306)
T ss_dssp             HHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEE
T ss_pred             HHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence            0001112233333  445556677789999999999999999999999999999999999999999999999864 6899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++||++. .+. .||+|++|++ |++++.|++++++..
T Consensus       243 i~itH~l~-~~~-~aD~i~vl~~-G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          243 IVVAHRLS-TVV-NADQILVIKD-GCIVERGRHEALLSR  278 (306)
T ss_dssp             EEECCSHH-HHH-TCSEEEEEET-TEEEEEECHHHHHHH
T ss_pred             EEEEcChH-HHH-cCCEEEEEEC-CEEEEECCHHHHHhc
Confidence            99999974 555 4999999997 999999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.1e-48  Score=317.15  Aligned_cols=177  Identities=20%  Similarity=0.237  Sum_probs=155.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEE-EEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISG-YVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~-~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|++ | ++|+|.++|.++.....++.++ |+||++.+  .+||.||+.++.....   .    .
T Consensus        36 ~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---~----~  104 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG---L----D  104 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC---C----C
T ss_pred             ECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc---h----H
Confidence            5999999999999999998 4 9999999999874321245689 99999887  7899999998754321   1    1


Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++   |+|++
T Consensus       105 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviiv  181 (263)
T 2pjz_A          105 RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILV  181 (263)
T ss_dssp             HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEE
T ss_pred             HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEE
Confidence            35688999999999 899999999999999999999999999999999999999999999999999998854   99999


Q ss_pred             ecCCcchHHhhcC-eEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFD-TVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d-~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||+.. .+..+|| ++++|++ |++++.|+++++.+
T Consensus       182 tHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          182 THELD-MLNLYKEYKAYFLVG-NRLQGPISVSELLE  215 (263)
T ss_dssp             ESCGG-GGGGCTTSEEEEEET-TEEEEEEEHHHHHT
T ss_pred             EcCHH-HHHHhcCceEEEEEC-CEEEEecCHHHHHh
Confidence            99974 6788999 9999987 89999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-49  Score=314.02  Aligned_cols=170  Identities=24%  Similarity=0.370  Sum_probs=147.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++.  ..++.++|+||++.+++.+||.||+.++...... ..   . .
T Consensus        41 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~  112 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-K  112 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-H
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-H
Confidence            59999999999999999998 79999999999875  3566799999999999999999999987543211 11   1 3


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +++.++++.+++.+. ++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||
T Consensus       113 ~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtH  191 (214)
T 1sgw_A          113 NEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR  191 (214)
T ss_dssp             HHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES
T ss_pred             HHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            568889999999988 9999999999999999999999999999999999999999999999999999766899999999


Q ss_pred             CCcchHHhhcCeEEEEeCCcEE
Q psy4235         161 QPTSGVFEKFDTVSLLAHGGLL  182 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~gg~i  182 (197)
                      ++. .+..+||+++++ . |.+
T Consensus       192 d~~-~~~~~~d~v~~~-~-~~~  210 (214)
T 1sgw_A          192 EEL-SYCDVNENLHKY-S-TKI  210 (214)
T ss_dssp             SCC-TTSSEEEEGGGG-B-C--
T ss_pred             CHH-HHHHhCCEEEEe-C-Ccc
Confidence            985 688889998755 3 554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.6e-49  Score=316.81  Aligned_cols=179  Identities=27%  Similarity=0.418  Sum_probs=151.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..   ..+++.++|+||++.+|+. ||+||+.++...    ...  
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~--  105 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT--  105 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC--
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhhccC----CCC--
Confidence            59999999999999999998 799999999999853   2345679999999998874 999999874211    111  


Q ss_pred             HHHHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQ-----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.++++.+++.+..+           +++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+
T Consensus       106 --~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~  183 (243)
T 1mv5_A          106 --DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD  183 (243)
T ss_dssp             --HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred             --HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence              234677888888766544           4567999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ ++.|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       184 ~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          184 SLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKHNELVA  226 (243)
T ss_dssp             HHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCHHHHHH
T ss_pred             Hhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence            997 6899999999964 45 56999999987 89988999988754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=9.8e-48  Score=311.30  Aligned_cols=177  Identities=24%  Similarity=0.384  Sum_probs=147.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ + +|+|.++|.++...   .+++.++|+||++.+|+ .||+||+.++.. .    ..  
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-~----~~--  121 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-D----AT--  121 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-T----CC--
T ss_pred             ECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-C----CC--
Confidence            59999999999999999987 6 89999999987532   24567999999999886 599999987421 1    11  


Q ss_pred             HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.++++.+++.+.           .++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus       122 --~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~  199 (260)
T 2ghi_A          122 --DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE  199 (260)
T ss_dssp             --HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              1345566666665432           346788999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++++ +.|+|++||++. .+ ..||++++|++ |+++..|++++++.
T Consensus       200 ~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~  242 (260)
T 2ghi_A          200 DLRK-NRTLIIIAHRLS-TI-SSAESIILLNK-GKIVEKGTHKDLLK  242 (260)
T ss_dssp             HHTT-TSEEEEECSSGG-GS-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             HhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            9964 789999999975 44 56999999987 89989999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=325.61  Aligned_cols=176  Identities=22%  Similarity=0.320  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||||+|+|+++  ++|+|+++|+++...   .+++.++||||++.+|+ +||+||+.+..      ..   
T Consensus        53 lGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~---  120 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH---  120 (390)
T ss_dssp             EESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS---
T ss_pred             ECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc---
Confidence            59999999999999999875  799999999998643   24567999999999998 59999996421      11   


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISG-----------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                       ..+++.++++.++|.+..++++.+           |||||||||+|||||+.+|++||||||||+||+..+.++.+.|+
T Consensus       121 -~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~  199 (390)
T 3gd7_A          121 -SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK  199 (390)
T ss_dssp             -CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence             124678899999999999999988           99999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. .+.|+|++||+..  +...|||+++|++ |+++..|++++++.
T Consensus       200 ~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~el~~  242 (390)
T 3gd7_A          200 QAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSILELYH  242 (390)
T ss_dssp             TTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHHHHHH
T ss_pred             HHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            864 4789999999963  4567999999987 99999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.6e-46  Score=299.03  Aligned_cols=167  Identities=22%  Similarity=0.315  Sum_probs=136.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|          .++|+||++.+++. ||+||+.++...      ..    
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----   97 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----   97 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----
Confidence            59999999999999999998 7999999998          38999999998886 999999875311      01    


Q ss_pred             HHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q psy4235          81 KTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l  148 (197)
                      ..+.++++.+++.+           ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+. ++++
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  177 (229)
T 2pze_A           98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL  177 (229)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence            11223333334332           23445689999999999999999999999999999999999999999997 4555


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      . ++.|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       178 ~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~  218 (229)
T 2pze_A          178 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQN  218 (229)
T ss_dssp             T-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECHHHHHT
T ss_pred             h-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            4 4789999999964 44 46999999987 88989999988764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=3.2e-46  Score=298.69  Aligned_cols=173  Identities=21%  Similarity=0.386  Sum_probs=137.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|          .++|+||++.+ +.+||+||+.++....   . ......
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~---~-~~~~~~  100 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAEMD-KVEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLE---E-PYYRSV  100 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTCSE-EEEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCC---T-THHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCccccC---H-HHHHHH
Confidence            59999999999999999998 7999999998          28999999865 5789999998753211   0 110000


Q ss_pred             HHHHHHHHHcCCc-----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCC
Q psy4235          81 KTITRVMENLGIN-----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK---QLACES  152 (197)
Q Consensus        81 ~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~---~l~~~~  152 (197)
                      ....++++.+++.     ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|.   +++ ++
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~  179 (237)
T 2cbz_A          101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN  179 (237)
T ss_dssp             HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT
T ss_pred             HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC
Confidence            1111123333331     23578899999999999999999999999999999999999999999999995   343 48


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       180 ~tviivtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~  217 (237)
T 2cbz_A          180 KTRILVTHSMS-YL-PQVDVIIVMSG-GKISEMGSYQELLA  217 (237)
T ss_dssp             SEEEEECSCST-TG-GGSSEEEEEET-TEEEEEECHHHHHH
T ss_pred             CEEEEEecChH-HH-HhCCEEEEEeC-CEEEEeCCHHHHhh
Confidence            89999999975 44 57999999987 89989999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.8e-46  Score=332.22  Aligned_cols=183  Identities=22%  Similarity=0.338  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.++||||++.+|+. ||+||+.++....     ..+
T Consensus       375 vG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~~  447 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDA-----TDD  447 (587)
T ss_dssp             ECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-----CHH
T ss_pred             ECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCC-----CHH
Confidence            59999999999999999998 7999999999998542   356779999999999976 9999998753211     111


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+     .+.+.++.+  |++...++++.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. 
T Consensus       448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-  526 (587)
T 3qf4_A          448 EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-  526 (587)
T ss_dssp             HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-
Confidence            1111     122334433  56667788899999999999999999999999999999999999999999999999985 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      +++|+|++||++. . ...||++++|++ |++++.|+++|+++.
T Consensus       527 ~~~tvi~itH~l~-~-~~~~d~i~vl~~-G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          527 KGCTTFIITQKIP-T-ALLADKILVLHE-GKVAGFGTHKELLEH  567 (587)
T ss_dssp             TTCEEEEEESCHH-H-HTTSSEEEEEET-TEEEEEECHHHHHHH
T ss_pred             CCCEEEEEecChH-H-HHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence            5899999999974 4 468999999987 999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.2e-45  Score=328.76  Aligned_cols=179  Identities=25%  Similarity=0.371  Sum_probs=150.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.++||||++.+|+. ||+||+.++...    ...  
T Consensus       375 vG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~--  446 (582)
T 3b60_A          375 VGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTE----EYS--  446 (582)
T ss_dssp             EECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTS----CCC--
T ss_pred             ECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCC----CCC--
Confidence            59999999999999999998 7999999999998642   345679999999999986 999999975311    111  


Q ss_pred             HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        ++++.++++.+++.+           ..++++.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+
T Consensus       447 --~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~  524 (582)
T 3b60_A          447 --REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD  524 (582)
T ss_dssp             --HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              234556666666544           3445668999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.+ ++|+|++||++. .+ +.||++++|++ |++++.|+++++++
T Consensus       525 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~  567 (582)
T 3b60_A          525 ELQK-NRTSLVIAHRLS-TI-EQADEIVVVED-GIIVERGTHSELLA  567 (582)
T ss_dssp             HHHT-TSEEEEECSCGG-GT-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             HHhC-CCEEEEEeccHH-HH-HhCCEEEEEEC-CEEEEecCHHHHHH
Confidence            9865 899999999975 44 57999999998 89999999999865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.8e-45  Score=327.66  Aligned_cols=179  Identities=25%  Similarity=0.379  Sum_probs=150.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++..   ..+++.++||||++.+|+. ||+||+.++...    ...  
T Consensus       375 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~--  446 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEG----EYT--  446 (582)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCC----CCC--
Confidence            69999999999999999998 799999999999853   2356779999999999986 999999985310    111  


Q ss_pred             HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.++++.+++.+.           .++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+
T Consensus       447 --~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~  524 (582)
T 3b5x_A          447 --REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             --HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence              2345666666665544           344568999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++.+ |+|+|++||++. .+ ..||++++|++ |++++.|+++++++
T Consensus       525 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~  567 (582)
T 3b5x_A          525 ELQK-NKTVLVIAHRLS-TI-EQADEILVVDE-GEIIERGRHADLLA  567 (582)
T ss_pred             HHcC-CCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            9864 899999999974 44 57999999987 99999999998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=9e-46  Score=329.35  Aligned_cols=178  Identities=25%  Similarity=0.386  Sum_probs=148.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.++||||++.+|+. ||+||+.++...     ... 
T Consensus       373 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~-  444 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATD-  444 (578)
T ss_dssp             ECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH-
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-----CCH-
Confidence            59999999999999999998 7999999999998542   356679999999999987 999999875311     111 


Q ss_pred             HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         +.+.+.++..+           ++....+++.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.++
T Consensus       445 ---~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~  521 (578)
T 4a82_A          445 ---EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD  521 (578)
T ss_dssp             ---HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence               23334444443           3444556667999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +++|+|++||++. .+ ..||++++|++ |++++.|+++|+++
T Consensus       522 ~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~-G~i~~~g~~~el~~  564 (578)
T 4a82_A          522 VLS-KDRTTLIVAHRLS-TI-THADKIVVIEN-GHIVETGTHRELIA  564 (578)
T ss_dssp             HHT-TTSEEEEECSSGG-GT-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             HHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            885 4789999999975 44 56999999997 99999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.8e-45  Score=328.48  Aligned_cols=178  Identities=26%  Similarity=0.401  Sum_probs=148.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|.++...   .+++.++||||++.+|+. ||+||+.++....     .  
T Consensus       387 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~--  457 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGA-----T--  457 (598)
T ss_dssp             ECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTC-----C--
T ss_pred             ECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCC-----C--
Confidence            59999999999999999998 7999999999998542   356779999999999875 9999998752211     1  


Q ss_pred             HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+.+.+.++.+++.+           ...++..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+
T Consensus       458 --~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~  535 (598)
T 3qf4_B          458 --DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW  535 (598)
T ss_dssp             --TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence              122344444444433           3344457999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +++|+|++||++. .+ ..||++++|++ |++++.|+++|+++
T Consensus       536 ~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          536 KLM-EGKTSIIIAHRLN-TI-KNADLIIVLRD-GEIVEMGKHDELIQ  578 (598)
T ss_dssp             HHH-TTSEEEEESCCTT-HH-HHCSEEEEECS-SSEEECSCHHHHHH
T ss_pred             HHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            986 5899999999985 44 55999999987 99999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=2.1e-44  Score=295.70  Aligned_cols=166  Identities=21%  Similarity=0.309  Sum_probs=133.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|          .++|+||++.+|+. ||+||+. +.  ..    ..    
T Consensus        70 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~----  126 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GV--SY----DE----  126 (290)
T ss_dssp             EESTTSSHHHHHHHHTTSSC-EEEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TT--CC----CH----
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cc--cc----ch----
Confidence            59999999999999999998 7999999987          38999999998885 9999997 32  11    01    


Q ss_pred             HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH
Q psy4235          81 KTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL-KQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l-~~l  148 (197)
                      ..+.++++.+++.+.           .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++
T Consensus       127 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~  206 (290)
T 2bbs_A          127 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL  206 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence            112333444444322           33456899999999999999999999999999999999999999999974 455


Q ss_pred             HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      + ++.|||++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus       207 ~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          207 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQN  247 (290)
T ss_dssp             T-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECHHHHHH
T ss_pred             h-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCHHHHhh
Confidence            4 4889999999974 45 56999999987 88988999988754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.2e-42  Score=307.30  Aligned_cols=174  Identities=24%  Similarity=0.241  Sum_probs=149.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.+          ...++|+||++.+++.+||.|++.+.....       ....
T Consensus       388 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~  449 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGVEE-PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSN  449 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHH
Confidence            59999999999999999998 79999975          245899999988888899999887641110       0113


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      +.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ +|.|+|++|
T Consensus       450 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs  529 (607)
T 3bk7_A          450 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE  529 (607)
T ss_dssp             HHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            5678899999999999999999999999999999999999999999999999999999999999999874 589999999


Q ss_pred             cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHh
Q psy4235         160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLK  193 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~  193 (197)
                      ||.. ++..+|||+++|++ .|.+...|++++++.
T Consensus       530 Hd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          530 HDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             SCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             CCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            9974 78899999999973 256667899988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=2.6e-42  Score=304.53  Aligned_cols=174  Identities=24%  Similarity=0.242  Sum_probs=149.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.+          ...++|+||++..++.+||.|++........       ...
T Consensus       318 ~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~  379 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGVEE-PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSN  379 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHH
Confidence            59999999999999999998 79999975          2358999999887788999988765411110       012


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      +.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|
T Consensus       380 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs  459 (538)
T 1yqt_A          380 FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE  459 (538)
T ss_dssp             HHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            4678899999999889999999999999999999999999999999999999999999999999999874 589999999


Q ss_pred             cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHh
Q psy4235         160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLK  193 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~  193 (197)
                      ||. +++..+|||+++|++ .|.+...|++++++.
T Consensus       460 Hd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          460 HDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             SCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             CCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            997 478899999999974 256777899987765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.2e-42  Score=332.43  Aligned_cols=181  Identities=26%  Similarity=0.408  Sum_probs=151.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|.|++. |++|+|.+||.|+..   ..+|++++||||+|.+|+. |++|||.|+....   ...  
T Consensus      1111 VG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~---~~s-- 1183 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPS---SVT-- 1183 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTT---TSC--
T ss_pred             ECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCC---CCC--
Confidence            69999999999999999998 799999999999865   3567889999999999998 9999998753211   111  


Q ss_pred             HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                        .+++.+.++..++.           ........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus      1184 --d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A         1184 --MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp             --HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence              23455555555543           33334456799999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++. +++|+|+++|.+.  ....||+|+||++ |+|++.|+++|+++.
T Consensus      1262 ~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A         1262 RAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp             TTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECHHHHHHC
T ss_pred             HHc-CCCEEEEeccCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence            875 4799999999985  3577999999987 999999999999863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1e-41  Score=300.47  Aligned_cols=173  Identities=20%  Similarity=0.222  Sum_probs=145.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.+++         +.++|++|+....+.+||.+|+.+...... ..     ..
T Consensus       300 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~-----~~  363 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGEIT-ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYLENASKDAL-ST-----SS  363 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT-CT-----TS
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCcEEEECC---------eeeEeechhcccccCCCHHHHHHHhhhhcc-ch-----hH
Confidence            59999999999999999998 7999998764         347999999777778899999987421110 01     12


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      ..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|
T Consensus       364 ~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs  443 (538)
T 3ozx_A          364 WFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID  443 (538)
T ss_dssp             HHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            4577899999999999999999999999999999999999999999999999999999999999999975 589999999


Q ss_pred             cCCcchHHhhcCeEEEEeCC-cEEEEecChhH
Q psy4235         160 HQPTSGVFEKFDTVSLLAHG-GLLAYHGQVSK  190 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~g-g~i~~~g~~~~  190 (197)
                      ||.. ++..+|||+++|+++ +.....+++.+
T Consensus       444 Hdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~  474 (538)
T 3ozx_A          444 HDLS-IHDYIADRIIVFKGEPEKAGLATSPVT  474 (538)
T ss_dssp             SCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             CCHH-HHHHhCCEEEEEeCCcceeccCCChHH
Confidence            9974 788999999999751 34444555543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=9e-42  Score=326.28  Aligned_cols=178  Identities=24%  Similarity=0.354  Sum_probs=150.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|.|+++ |++|+|.+||.++..   ..+++.++||+|++.+|.. |++|||.|+...     ... 
T Consensus       450 vG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~~-  521 (1321)
T 4f4c_A          450 VGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----ITR-  521 (1321)
T ss_dssp             EECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CCH-
T ss_pred             EecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----chH-
Confidence            69999999999999999998 799999999999865   3456789999999999987 999999986321     111 


Q ss_pred             HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         +++.++++..+           ++.....+..+||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+
T Consensus       522 ---~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~  598 (1321)
T 4f4c_A          522 ---EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD  598 (1321)
T ss_dssp             ---HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred             ---HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence               23444444433           3444555667899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +++|+|++||++.  ..+.||+|++|++ |+|++.|+.+|+++
T Consensus       599 ~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          599 KAA-KGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHRALMA  641 (1321)
T ss_dssp             HHH-TTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHHHHHT
T ss_pred             HHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHHHHHH
Confidence            886 4899999999975  4688999999987 99999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.9e-42  Score=326.39  Aligned_cols=182  Identities=26%  Similarity=0.400  Sum_probs=149.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.+|||+|++.+|+. ||+||+.++....     ..+
T Consensus       422 vG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~-----~~~  494 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDV-----TMD  494 (1284)
T ss_dssp             ECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSC-----CHH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCC-----CHH
Confidence            69999999999999999998 799999999999854   2456679999999999987 9999999874211     111


Q ss_pred             HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+.     +.+.++.+  |++.....++.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.++.+. 
T Consensus       495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-  573 (1284)
T 3g5u_A          495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-  573 (1284)
T ss_dssp             HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-
Confidence            11111     23334444  34445566778999999999999999999999999999999999999999999998875 


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|+|+|++||+.. .+ ..||+|++|++ |++++.|+++++++
T Consensus       574 ~~~t~i~itH~l~-~i-~~~d~i~vl~~-G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          574 EGRTTIVIAHRLS-TV-RNADVIAGFDG-GVIVEQGNHDELMR  613 (1284)
T ss_dssp             TTSEEEEECSCHH-HH-TTCSEEEECSS-SCCCCEECHHHHHH
T ss_pred             CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            4899999999974 45 55999999987 89999999998865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.9e-41  Score=320.56  Aligned_cols=180  Identities=27%  Similarity=0.450  Sum_probs=146.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...   .+++.++||||++.+|+. ||+||+.++....   .... 
T Consensus      1065 vG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~- 1138 (1284)
T 3g5u_A         1065 VGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSY- 1138 (1284)
T ss_dssp             ECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCH-
T ss_pred             ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCH-
Confidence            59999999999999999998 7999999999998642   356779999999988864 9999998753211   1111 


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         +.+.+.++..++           +........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+
T Consensus      1139 ---~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A         1139 ---EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp             ---HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence               223333333333           233344567899999999999999999999999999999999999999999998


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ++. +|+|+|++||+.. .+ ..||||++|++ |++++.|+++++++
T Consensus      1216 ~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~-G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1216 KAR-EGRTCIVIAHRLS-TI-QNADLIVVIQN-GKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             HHS-SSSCEEEECSCTT-GG-GSCSEEEEEET-BEEEEEECHHHHHH
T ss_pred             HhC-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence            864 5899999999985 45 56999999997 99999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-41  Score=299.10  Aligned_cols=175  Identities=21%  Similarity=0.149  Sum_probs=147.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+.      +.    ...++|++|+.......||.+++....  ... ..    ..
T Consensus       384 iG~NGsGKSTLlk~l~Gl~~-p~~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~~-~~----~~  445 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGALK-PDEGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKKI--RGQ-FL----NP  445 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTSSC-CSBCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHHC--SST-TT----SH
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCCcC------cc----CCcEEEecccccccCCccHHHHHHHHh--hcc-cc----cH
Confidence            59999999999999999998 798862      21    235899999977666679999875422  111 11    12


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI  159 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t  159 (197)
                      ..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|+|++|
T Consensus       446 ~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt  525 (608)
T 3j16_B          446 QFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE  525 (608)
T ss_dssp             HHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            4567899999999999999999999999999999999999999999999999999999999999999864 589999999


Q ss_pred             cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHhh
Q psy4235         160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLKH  194 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~~  194 (197)
                      ||. +++..+|||+++|++ .|+++..|+|++++..
T Consensus       526 Hdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          526 HDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             SCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             CCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            997 478899999999985 2678889999887654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7.7e-40  Score=288.81  Aligned_cols=164  Identities=23%  Similarity=0.248  Sum_probs=136.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE---------EECCeeCCcc-----cccceEEEEecCCCCCCC---CCHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI---------LLNGCPISRT-----VMSRISGYVAQQDFLIEE---LTVLEHLQ   63 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~---ltv~e~l~   63 (197)
                      +||||||||||+|+|+|+++ |++|++         .++|.++...     .....+++++|...+++.   .|+.+++.
T Consensus        53 vG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~  131 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK  131 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence            69999999999999999998 799985         3566554210     112347899987544332   38888875


Q ss_pred             HHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235          64 FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~  143 (197)
                      ...            ..+++.++++.+|+....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus       132 ~~~------------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~  199 (538)
T 1yqt_A          132 KAD------------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR  199 (538)
T ss_dssp             HHC------------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             hhh------------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence            310            01346789999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|++++++|.|||++||+. .++..+||++++|.+
T Consensus       200 ~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~  233 (538)
T 1yqt_A          200 AIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYG  233 (538)
T ss_dssp             HHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEE
T ss_pred             HHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcC
Confidence            9999987899999999997 478899999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=5.5e-40  Score=292.91  Aligned_cols=164  Identities=23%  Similarity=0.264  Sum_probs=136.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE---------EECCeeCCcc-----cccceEEEEecCCCCCC---CCCHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI---------LLNGCPISRT-----VMSRISGYVAQQDFLIE---ELTVLEHLQ   63 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~q~~~~~~---~ltv~e~l~   63 (197)
                      +||||||||||+|+|+|+++ |++|++         .++|.++...     ..+..+++++|...+++   ..||.||+.
T Consensus       123 iG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~  201 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK  201 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred             ECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhh
Confidence            69999999999999999998 799986         4566554221     11234788888743322   138999886


Q ss_pred             HHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235          64 FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~  143 (197)
                      ..   .   .      .+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus       202 ~~---~---~------~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~  269 (607)
T 3bk7_A          202 KV---D---E------VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR  269 (607)
T ss_dssp             HT---C---C------SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             hh---H---H------HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence            31   0   0      1346789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|++++++|.|||++|||.. .+..+||++++|.+
T Consensus       270 ~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~  303 (607)
T 3bk7_A          270 VIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG  303 (607)
T ss_dssp             HHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred             HHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence            99999877999999999974 78889999999975

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=7.7e-39  Score=289.03  Aligned_cols=187  Identities=21%  Similarity=0.269  Sum_probs=122.2

Q ss_pred             CCCCCCcHHHHH---------------------HHHhcCcCCCc-------eeEEEECCeeCCcccccceEEEEecCC--
Q psy4235           1 MSPSGAGKTTLL---------------------AALNKRVKGLV-------QGEILLNGCPISRTVMSRISGYVAQQD--   50 (197)
Q Consensus         1 iG~nGaGKSTLl---------------------~~i~g~~~~~~-------~G~i~~~g~~~~~~~~~~~~~~v~q~~--   50 (197)
                      +||||||||||+                     +++.|+.. |+       .|.|.++|.+.... .++.++|++|..  
T Consensus        50 iGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~~~~  127 (670)
T 3ux8_A           50 TGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEIYDY  127 (670)
T ss_dssp             ECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSCC------CCBHHHHTTCC--
T ss_pred             ECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCchhhcc-chhceeeeechhhh
Confidence            699999999998                     88888777 56       45666776654321 122344444432  


Q ss_pred             -----------------CCCCCCCHHHHHHHHHHccCCccccHHHHH------HHHHHHHHHcCCccc-ccccCCCCCHH
Q psy4235          51 -----------------FLIEELTVLEHLQFMAKLTMDRRTTWLELN------KTITRVMENLGINHR-RQVQISGLSGG  106 (197)
Q Consensus        51 -----------------~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~~-~~~~~~~LSgG  106 (197)
                                       ..++.+||.||+.++........ ......      ....++++.+||.+. +++++.+||||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGG  206 (670)
T 3ux8_A          128 LRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGG  206 (670)
T ss_dssp             -----------------------CC---------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCHH
T ss_pred             HHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHH
Confidence                             23467899999987532211100 000000      111245888999865 68999999999


Q ss_pred             HHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eC
Q psy4235         107 QRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AH  178 (197)
Q Consensus       107 q~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~  178 (197)
                      |||||+|||||+.+|+  +|||||||+|||+.++.+++++|++++++|.|||++|||.. . ...||++++|      ++
T Consensus       207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~ii~l~~g~~~~~  284 (670)
T 3ux8_A          207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHG  284 (670)
T ss_dssp             HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHHCSEEEEECSSSGGGC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEecccccccC
Confidence            9999999999999998  99999999999999999999999999888999999999974 4 5569999999      65


Q ss_pred             CcEEEEecChhHHHh
Q psy4235         179 GGLLAYHGQVSKVLK  193 (197)
Q Consensus       179 gg~i~~~g~~~~~~~  193 (197)
                       |++++.|+++++..
T Consensus       285 -G~i~~~g~~~~~~~  298 (670)
T 3ux8_A          285 -GEVVAAGTPEEVMN  298 (670)
T ss_dssp             -CSEEEEECHHHHHT
T ss_pred             -CEEEEecCHHHHhc
Confidence             89999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=9.4e-39  Score=281.61  Aligned_cols=162  Identities=23%  Similarity=0.219  Sum_probs=130.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE-----------EECCeeCCcc-----cccceEEEEec----CCCCCCCCCHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI-----------LLNGCPISRT-----VMSRISGYVAQ----QDFLIEELTVLE   60 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~q----~~~~~~~ltv~e   60 (197)
                      +||||||||||+|+|+|+++ |++|+|           .++|.++...     .....+....|    .+.++. .++.+
T Consensus        31 iGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  108 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNE  108 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHH
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-CcHHH
Confidence            69999999999999999998 799998           5777665321     00112333333    333333 37877


Q ss_pred             HHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy4235          61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN  140 (197)
Q Consensus        61 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~  140 (197)
                      ++...   .         ..+.+.++++.+++....++++.+|||||||||+|||||+.+|++|||||||++||+.++.+
T Consensus       109 ~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~  176 (538)
T 3ozx_A          109 ILTKI---D---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN  176 (538)
T ss_dssp             HHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred             Hhhcc---h---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            65421   0         11346789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         141 VVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       141 i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +.++|+++++ |.|||++||+. +.+..+||++++|.+
T Consensus       177 l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~  212 (538)
T 3ozx_A          177 MAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYG  212 (538)
T ss_dssp             HHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEE
T ss_pred             HHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecC
Confidence            9999999976 89999999997 478999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1e-36  Score=281.55  Aligned_cols=166  Identities=27%  Similarity=0.367  Sum_probs=138.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|       |+|  +|.+...   ...++|++|+. .+++.+||.||+.+  ...   ..     
T Consensus       467 iGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----  524 (986)
T 2iw3_A          467 CGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----  524 (986)
T ss_dssp             ECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----
T ss_pred             ECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----
Confidence            69999999999999995       222  3433321   12368999884 67889999999975  111   11     


Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++   .|.|+|++
T Consensus       525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIiv  601 (986)
T 2iw3_A          525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITI  601 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEE
T ss_pred             HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEE
Confidence            35688999999995 678999999999999999999999999999999999999999999999999988   58899999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~  193 (197)
                      ||+. .++..+||++++|++ |+++ +.|+++++..
T Consensus       602 SHdl-~~l~~~adrii~L~~-G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          602 SHDS-VFLDNVCEYIINYEG-LKLRKYKGNFTEFVK  635 (986)
T ss_dssp             CSCH-HHHHHHCSEEEEEET-TEEEEEESCHHHHHH
T ss_pred             ECCH-HHHHHhCCEEEEEEC-CeeecCCCCHHHHHh
Confidence            9997 478899999999987 7775 6899988754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=8.8e-37  Score=275.62  Aligned_cols=127  Identities=24%  Similarity=0.359  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235          55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT  130 (197)
Q Consensus        55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt  130 (197)
                      .+||.||+.++...         ...+++.+.++.+++.. ..++++.+|||||||||+|||||+.+|   ++|||||||
T Consensus       504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt  574 (670)
T 3ux8_A          504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  574 (670)
T ss_dssp             TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred             hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence            57899998875321         11234567888899864 568999999999999999999999887   599999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~  193 (197)
                      +|||+.++..++++|++++++|.|||++|||+. . ...||++++|      ++ |++++.|+++++.+
T Consensus       575 ~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~-G~i~~~g~~~~~~~  640 (670)
T 3ux8_A          575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRG-GQIVAVGTPEEVAE  640 (670)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGC-CEEEEEECHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCC-CEEEEecCHHHHHh
Confidence            999999999999999999888999999999974 4 4679999999      65 99999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-37  Score=273.31  Aligned_cols=166  Identities=22%  Similarity=0.278  Sum_probs=128.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE-----------EECCeeCCcc---cccce--EEEEecCCCC------CCCCCH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI-----------LLNGCPISRT---VMSRI--SGYVAQQDFL------IEELTV   58 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-----------~~~g~~~~~~---~~~~~--~~~v~q~~~~------~~~ltv   58 (197)
                      +||||||||||||+|+|+++ |++|+|           .+.|.++...   ...+.  ..+.+|....      .+..++
T Consensus       109 vGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  187 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKV  187 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHH
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHH
Confidence            69999999999999999998 799987           2333322110   00111  1233332211      112245


Q ss_pred             HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235          59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA  138 (197)
Q Consensus        59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~  138 (197)
                      .+++....  .        ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       188 ~~~l~~~~--~--------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~  257 (608)
T 3j16_B          188 GELLKLRM--E--------KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR  257 (608)
T ss_dssp             HHHHHHHC--C--------SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred             HHHHhhhh--h--------hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence            55443210  0        1125688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      ..+.++|++++++|.|||++||+. +++..+||++++|.+
T Consensus       258 ~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~  296 (608)
T 3j16_B          258 LNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYG  296 (608)
T ss_dssp             HHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEES
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence            999999999988899999999997 478999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=9.8e-37  Score=281.69  Aligned_cols=173  Identities=27%  Similarity=0.328  Sum_probs=133.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCC----CCCCCHHHHHHHHHHccC------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFL----IEELTVLEHLQFMAKLTM------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~----~~~ltv~e~l~~~~~~~~------   70 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|.        ..++|++|++..    ....|+.+++.+......      
T Consensus       705 iGpNGSGKSTLLklLaGll~-P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~  775 (986)
T 2iw3_A          705 IGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMD  775 (986)
T ss_dssp             CSCCCHHHHHHHHHHTTSSC-CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTT
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCceEEEEcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhh
Confidence            69999999999999999998 79999999862        137888887421    223577777665321000      


Q ss_pred             ---------------------------------------------------------C-cc--------ccH--------
Q psy4235          71 ---------------------------------------------------------D-RR--------TTW--------   76 (197)
Q Consensus        71 ---------------------------------------------------------~-~~--------~~~--------   76 (197)
                                                                               . ..        ...        
T Consensus       776 ~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~  855 (986)
T 2iw3_A          776 RANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHS  855 (986)
T ss_dssp             TTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHH
T ss_pred             hhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHh
Confidence                                                                     0 00        000        


Q ss_pred             ------------------HHHHHHHHHHHHHcCCcc-c-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy4235          77 ------------------LELNKTITRVMENLGINH-R-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY  136 (197)
Q Consensus        77 ------------------~~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~  136 (197)
                                        ....+.+.++++.+||.. . .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       856 ~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~  935 (986)
T 2iw3_A          856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD  935 (986)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHH
T ss_pred             hhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence                              001346788999999975 3 68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235         137 SANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ  187 (197)
Q Consensus       137 ~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~  187 (197)
                      +...+.+.|+++   +.+||++||+. +++..+||++++|.+ |+++..|+
T Consensus       936 s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrVivL~~-G~Iv~~G~  981 (986)
T 2iw3_A          936 SLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEVWAVKD-GRMTPSGH  981 (986)
T ss_dssp             HHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEEECCBT-TBCCC---
T ss_pred             HHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEeCC
Confidence            999999988765   56999999996 478899999999987 88776654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=7.1e-34  Score=262.01  Aligned_cols=128  Identities=27%  Similarity=0.415  Sum_probs=108.4

Q ss_pred             CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235          55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT  130 (197)
Q Consensus        55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt  130 (197)
                      .+||.|++.|+...         ....++.++|+.+||.. ..++++.+|||||||||+|||||+.+|   ++|||||||
T Consensus       766 ~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT  836 (916)
T 3pih_A          766 DMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT  836 (916)
T ss_dssp             SSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred             hCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence            36788888775321         12245678999999975 468899999999999999999999875   799999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      +|||+.+++.+++.|++++++|.|||+++|++. . ...||+|++|.     ++|++++.|++++++.
T Consensus       837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence            999999999999999999888999999999974 4 46699999992     3499999999999875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=8.6e-34  Score=260.75  Aligned_cols=128  Identities=25%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235          55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT  130 (197)
Q Consensus        55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt  130 (197)
                      .+||.|++.|+...       . . ..++.++++.++|.. ..++++.+|||||||||+||++|+.+|   ++|||||||
T Consensus       806 ~ltv~e~l~~~~~~-------~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT  876 (972)
T 2r6f_A          806 DMTVEDALDFFASI-------P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  876 (972)
T ss_dssp             TSBHHHHHHHTCSC-------H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred             hcCHHHHHHHHhcc-------h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            35777877764211       1 1 134568999999987 789999999999999999999999865   999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      +|||+.++..++++|++++++|.|||++||++. . ...||++++|.     ++|++++.|+++++..
T Consensus       877 sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          877 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence            999999999999999999888999999999964 4 46899999993     3489999999998864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=1.2e-33  Score=258.64  Aligned_cols=111  Identities=27%  Similarity=0.351  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235          81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE---PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI  156 (197)
Q Consensus        81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii  156 (197)
                      +++.++++.++|.. ..++++.+|||||||||+||++|+.+   |++|||||||+|||+..+..+.++|++++++|.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            46788999999987 46899999999999999999999996   799999999999999999999999999988899999


Q ss_pred             EEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         157 CAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       157 i~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      ++||+.. .+ ..||++++|.     ++|++++.|+++++..
T Consensus       788 visHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~  827 (842)
T 2vf7_A          788 AVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ  827 (842)
T ss_dssp             EECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred             EEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence            9999974 55 7899999993     3489999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-36  Score=260.58  Aligned_cols=170  Identities=15%  Similarity=0.079  Sum_probs=134.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-E-EEECCeeCCcccccceEEEEecCCC---CCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-E-ILLNGCPISRTVMSRISGYVAQQDF---LIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+.. |++| + |+++|.      .++.++|+||+..   +++.+|+.||+ |+....... . 
T Consensus       144 vGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~-~-  213 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA-T-  213 (460)
T ss_dssp             EESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC-C-
T ss_pred             ECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-cccccccCc-c-
Confidence            59999999999999999998 7999 9 999982      2466899999974   44567999988 543211110 0 


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHH
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ--LLTEPQI----LFCDE-PTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a--l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l  148 (197)
                         ..+.+.++++.+|+.+..+  +.+||||||||++||||  |+.+|++    ||||| ||++||+. .+.+.++++++
T Consensus       214 ---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~  287 (460)
T 2npi_A          214 ---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL  287 (460)
T ss_dssp             ---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT
T ss_pred             ---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh
Confidence               0123456778889987765  88999999999999999  9999999    99999 99999999 66666666553


Q ss_pred             HhCCCEEEEEecCCc--c---hHHhhcCe-----EEEEe-CCcEEEEecChhHH
Q psy4235         149 ACESRIVICAIHQPT--S---GVFEKFDT-----VSLLA-HGGLLAYHGQVSKV  191 (197)
Q Consensus       149 ~~~~~~iii~th~~~--~---~~~~~~d~-----v~~l~-~gg~i~~~g~~~~~  191 (197)
                         +.++|+++|+..  .   .+..+||+     +++|+ + |+++ .|+++++
T Consensus       288 ---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~-G~iv-~g~~~~~  336 (460)
T 2npi_A          288 ---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL-DGVS-AVDDVYK  336 (460)
T ss_dssp             ---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC-TTCC-CCCHHHH
T ss_pred             ---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC-CcEE-ECCHHHH
Confidence               678999999864  1   56689999     99998 6 7777 8888765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=1.9e-32  Score=234.05  Aligned_cols=79  Identities=25%  Similarity=0.333  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE----
Q psy4235         103 LSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL----  176 (197)
Q Consensus       103 LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l----  176 (197)
                      ||||||||++||++|+.+|  ++|||||||++||+..+..+.+.|++++ ++.+||++||++  .+...||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999997 589999999996  356789999999    


Q ss_pred             eCCcEEEEe
Q psy4235         177 AHGGLLAYH  185 (197)
Q Consensus       177 ~~gg~i~~~  185 (197)
                      .+ |+++..
T Consensus       373 ~~-G~~~~~  380 (415)
T 4aby_A          373 ED-GRTVSH  380 (415)
T ss_dssp             ET-TEEEEE
T ss_pred             cC-CceEEE
Confidence            77 766543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=1.2e-29  Score=214.25  Aligned_cols=85  Identities=22%  Similarity=0.399  Sum_probs=77.8

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235          97 QVQISGLSGGQRKRLALAVQLL------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      ++++.+||||||||++||+||+      .+|++|||||||++||+.++..+++.|++++++|.|||++||++. . ...|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhC
Confidence            5788999999999999999999      799999999999999999999999999999888999999999973 3 7889


Q ss_pred             CeEEEEeCCcEEEE
Q psy4235         171 DTVSLLAHGGLLAY  184 (197)
Q Consensus       171 d~v~~l~~gg~i~~  184 (197)
                      |++++|++ |+++.
T Consensus       352 d~~~~l~~-G~i~~  364 (365)
T 3qf7_A          352 DRKLRITG-GVVVN  364 (365)
T ss_dssp             SCEEEEET-TEEC-
T ss_pred             CEEEEEEC-CEEEe
Confidence            99999987 87753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=5.7e-30  Score=212.73  Aligned_cols=94  Identities=28%  Similarity=0.357  Sum_probs=78.4

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235          95 RRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      ..+.++..||+|||||++||+||+    .+|++|||||||++||+..+..+.++|+++. ++.++|++||+.  .+...|
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~  288 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAA  288 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGC
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhC
Confidence            356778999999999999999997    5889999999999999999999999999985 478999999995  367889


Q ss_pred             CeE--EEEeCCcEEEEecChhHH
Q psy4235         171 DTV--SLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       171 d~v--~~l~~gg~i~~~g~~~~~  191 (197)
                      |++  ++|.+|...+...+.++.
T Consensus       289 d~~~~v~~~~g~s~~~~~~~~~~  311 (322)
T 1e69_A          289 DLLHGVTMVNGVSAIVPVEVEKI  311 (322)
T ss_dssp             SEEEEEEESSSCEEEEECCC---
T ss_pred             ceEEEEEEeCCEEEEEEEEcchh
Confidence            986  788876666666665554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.96  E-value=5.1e-31  Score=201.97  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|++.      |.++|.+....   ..++.+||++|+.      ++.+++ + ....        
T Consensus         6 ~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--------   63 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--------   63 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--------
T ss_pred             ECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--------
Confidence            59999999999999999874      23344332111   2346689999975      222222 0 0000        


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ-----LLTEPQILFCDE--PTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a-----l~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~  150 (197)
                                  +.-....++++.+||||||||++||+|     ++.+|+++||||  ||++||+..++.+.+++++   
T Consensus        64 ------------~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---  128 (178)
T 1ye8_A           64 ------------FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---  128 (178)
T ss_dssp             ------------CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---
T ss_pred             ------------CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---
Confidence                        000135678889999999999999996     999999999999  9999999999999988865   


Q ss_pred             CCCEEEEEec--CCcchHHhhcCe
Q psy4235         151 ESRIVICAIH--QPTSGVFEKFDT  172 (197)
Q Consensus       151 ~~~~iii~th--~~~~~~~~~~d~  172 (197)
                      .+.++|+++|  |....+..+|++
T Consensus       129 ~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          129 PNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             CCCeEEEEEccCCCchHHHHHHhc
Confidence            4667888886  344678888997

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=6.4e-32  Score=211.79  Aligned_cols=125  Identities=18%  Similarity=0.222  Sum_probs=88.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--cccccceEEEEecCCCCCCCCCHHHHH-HHHH----HccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLEHL-QFMA----KLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l-~~~~----~~~~~~~   73 (197)
                      +||||||||||+|+|+|+ + |++|+|..  .++.  ....++.+||+||++        .||+ .+..    .....  
T Consensus        28 iG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~~--   93 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRDM--   93 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTTT--
T ss_pred             ECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHHh--
Confidence            599999999999999999 7 79999843  2221  123456799999976        3444 2210    11100  


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                      ..    .+.+.++++. ++             |||||++|||||+.+|++|||||||++    ++..+.++|+++ +++.
T Consensus        94 ~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~  150 (208)
T 3b85_A           94 VE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGS  150 (208)
T ss_dssp             SC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTC
T ss_pred             cc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCC
Confidence            00    1345566655 43             999999999999999999999999999    899999999998 6688


Q ss_pred             EEEEEecCCc
Q psy4235         154 IVICAIHQPT  163 (197)
Q Consensus       154 ~iii~th~~~  163 (197)
                      ++| +||+..
T Consensus       151 tii-vtHd~~  159 (208)
T 3b85_A          151 KMV-VTGDIT  159 (208)
T ss_dssp             EEE-EEEC--
T ss_pred             EEE-EECCHH
Confidence            888 999964

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.95  E-value=7.1e-31  Score=213.40  Aligned_cols=143  Identities=19%  Similarity=0.251  Sum_probs=96.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+.. |++|+|.++|.++.....++.++|++|++.+++.+||.||+.|+......  ..+    
T Consensus         8 vG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~~----   80 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NCW----   80 (270)
T ss_dssp             EESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TCS----
T ss_pred             ECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HHH----
Confidence            69999999999999999998 79999999999886555557799999999999999999999887543211  111    


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++    ....++.+.+||||||||+++|||++.   ++++|||+++||+..    .++++.+++. .++|++.|
T Consensus        81 ~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~  148 (270)
T 3sop_A           81 EPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIA  148 (270)
T ss_dssp             HHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEET
T ss_pred             HHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEe
Confidence            22333333    345566788999999999999999875   999999999999987    4556666655 78888887


Q ss_pred             CC
Q psy4235         161 QP  162 (197)
Q Consensus       161 ~~  162 (197)
                      ..
T Consensus       149 K~  150 (270)
T 3sop_A          149 KA  150 (270)
T ss_dssp             TG
T ss_pred             cc
Confidence            64

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.94  E-value=2.4e-30  Score=221.04  Aligned_cols=152  Identities=10%  Similarity=0.092  Sum_probs=120.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|.+++     + .+|++|++ .++.+|+.||+.+...            .
T Consensus        75 vG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t-----~-~~~v~q~~-~~~~ltv~D~~g~~~~------------~  134 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT-----M-ERHPYKHP-NIPNVVFWDLPGIGST------------N  134 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCT-TSTTSCCCCC---------C-CCEEEECS-SCTTEEEEECCCGGGS------------S
T ss_pred             ECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc-----e-eEEecccc-ccCCeeehHhhcccch------------H
Confidence            59999999999999999998 79999999997753     1 27899985 5778899888654310            1


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHH--HHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGG--QRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgG--q~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ..+.++++.+++.+... .+. ||+|  |+||+.||++|+.          +|++++|||||+|||+..+.++.+.++++
T Consensus       135 ~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l  212 (413)
T 1tq4_A          135 FPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN  212 (413)
T ss_dssp             CCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence            24678899999876533 333 9999  9999999999999          99999999999999999999999999998


Q ss_pred             H-----hCC----CEEEEEecCCcc-hHHhhcCeEE
Q psy4235         149 A-----CES----RIVICAIHQPTS-GVFEKFDTVS  174 (197)
Q Consensus       149 ~-----~~~----~~iii~th~~~~-~~~~~~d~v~  174 (197)
                      .     +.|    .++++++|.... .+..+||++.
T Consensus       213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            4     222    567788887642 2788888874

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=5.8e-27  Score=216.16  Aligned_cols=162  Identities=25%  Similarity=0.376  Sum_probs=125.2

Q ss_pred             HHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc--ccc---HHHHHHHHHHH
Q psy4235          12 LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR--RTT---WLELNKTITRV   86 (197)
Q Consensus        12 l~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~--~~~---~~~~~~~~~~~   86 (197)
                      ..|..+.+. |..++|+++|.++..                +..+|+.+++.|........  ...   .........+.
T Consensus       385 ~~C~g~rl~-~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  447 (916)
T 3pih_A          385 SVCGGRRLN-REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF  447 (916)
T ss_dssp             TTTCSCCBC-TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred             hhcccccCC-hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence            344445566 688999999987632                33457777777654332111  000   00111234567


Q ss_pred             HHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235          87 MENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus        87 l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      +..+||... +++++.+|||||+|||+|||||+.+|+  +|||||||+|||+..+.+++++|++++++|.|||+++||..
T Consensus       448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~  527 (916)
T 3pih_A          448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE  527 (916)
T ss_dssp             HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred             HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            888999865 689999999999999999999999887  99999999999999999999999999888999999999963


Q ss_pred             chHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235         164 SGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       164 ~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~  193 (197)
                       .+ ..||++++|      ++ |++++.|++++++.
T Consensus       528 -~~-~~aD~ii~lgpgag~~~-G~iv~~G~~~e~~~  560 (916)
T 3pih_A          528 -VI-RNADHIIDIGPGGGTNG-GRVVFQGTVDELLK  560 (916)
T ss_dssp             -HH-HTCSEEEEEESSSGGGC-SEEEEEECHHHHHH
T ss_pred             -HH-HhCCEEEEEcCCcccCC-CEEEEeechhhhhc
Confidence             44 569999999      54 99999999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.93  E-value=6.8e-31  Score=205.20  Aligned_cols=164  Identities=11%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC---CccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM---DRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~   77 (197)
                      +||||||||||+|+|+|+++ ...+.+.+.+.+.. ...++.++|+||++.+|+.+|+.+++.+......   .......
T Consensus        26 ~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~  103 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQ  103 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHH
T ss_pred             ECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHH
Confidence            69999999999999999985 33333222221111 1123558999999888888888777642211110   0112233


Q ss_pred             HHHHHHHHH------HHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC----CHHHHHHHHHHHHH
Q psy4235          78 ELNKTITRV------MENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGL----DSYSANNVVNLLKQ  147 (197)
Q Consensus        78 ~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~L----D~~~~~~i~~~l~~  147 (197)
                      ..++.+.+.      ++.+++....++++..||           +|+.+|++++|||||+++    |+..++++.+.+++
T Consensus       104 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~  172 (207)
T 1znw_A          104 PVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIE  172 (207)
T ss_dssp             HHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            344555555      666777777788888998           999999999999999998    78899999999999


Q ss_pred             HHh-CCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         148 LAC-ESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       148 l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +++ .+.++|++||++ +++..+||++++|..
T Consensus       173 l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~~  203 (207)
T 1znw_A          173 LAAQGDFDKVVVNRRL-ESACAELVSLLVGTA  203 (207)
T ss_dssp             HHGGGGSSEEEECSSH-HHHHHHHHHHHC---
T ss_pred             HhhhccCcEEEECCCH-HHHHHHHHHHHHhcc
Confidence            975 488999999997 479999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.93  E-value=7.8e-28  Score=198.34  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=121.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++...       .+  +..++|++|++. +++.+|++||+.++.....
T Consensus       106 vG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~  184 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGY  184 (302)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCC
Confidence            69999999999999999998 6899999999987542       12  235899999988 8999999999987643211


Q ss_pred             CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .            ..+++.+|+.+..++++.+||   +||++||||++.+|+  +|+|| ||+|||+..+.      +++
T Consensus       185 d------------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~  242 (302)
T 3b9q_A          185 D------------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF  242 (302)
T ss_dssp             S------------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred             c------------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHH
Confidence            0            124566788777788899999   999999999999999  99999 99999998652      445


Q ss_pred             Hh-CCCEEEEEecCCc--------chHHhhcCeEEEEeCC
Q psy4235         149 AC-ESRIVICAIHQPT--------SGVFEKFDTVSLLAHG  179 (197)
Q Consensus       149 ~~-~~~~iii~th~~~--------~~~~~~~d~v~~l~~g  179 (197)
                      .+ .+.++|++||...        ..+....+.+.++..|
T Consensus       243 ~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G  282 (302)
T 3b9q_A          243 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG  282 (302)
T ss_dssp             HHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred             HHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence            43 4889999999431        2344567788888873

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.92  E-value=2.7e-27  Score=179.80  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             cCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCC
Q psy4235          90 LGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY----------------SANNVVNLLKQLACESR  153 (197)
Q Consensus        90 ~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~----------------~~~~i~~~l~~l~~~~~  153 (197)
                      .+.....+ .....|+|||||++||||++.+|++|+|||||++||+.                .+..+.+.|++++++|.
T Consensus        72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~  150 (171)
T 4gp7_A           72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF  150 (171)
T ss_dssp             TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred             CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence            34443333 33456999999999999999999999999999999999                56889999998887799


Q ss_pred             EEEEEecCCc
Q psy4235         154 IVICAIHQPT  163 (197)
Q Consensus       154 ~iii~th~~~  163 (197)
                      |+|++||++.
T Consensus       151 tvi~vtH~~~  160 (171)
T 4gp7_A          151 RYVYILNSPE  160 (171)
T ss_dssp             SEEEEECSHH
T ss_pred             cEEEEeCCHH
Confidence            9999999964

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.92  E-value=1.4e-24  Score=199.82  Aligned_cols=138  Identities=22%  Similarity=0.380  Sum_probs=113.0

Q ss_pred             CCCCCHHHHHHHHHHccCCcc---c---cHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235          53 IEELTVLEHLQFMAKLTMDRR---T---TWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI  123 (197)
Q Consensus        53 ~~~ltv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l  123 (197)
                      +..+||.|++.|+..+.....   .   ...+..+++ +.+..+||... +++++.+|||||+|||+||++|..+|  ++
T Consensus       449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l  527 (972)
T 2r6f_A          449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  527 (972)
T ss_dssp             HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred             HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            456899999999766542210   0   002234444 45889999865 79999999999999999999999985  99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      |||||||++||+...+++++.|+++++.|.|||+++|+.. . ...||+|++|.     ++|++++.|+++++..
T Consensus       528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            9999999999999999999999999888999999999963 4 46799999993     3599999999988754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.92  E-value=9.5e-27  Score=195.69  Aligned_cols=155  Identities=17%  Similarity=0.126  Sum_probs=122.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+++|+|+++ +++|+|.++|.++.+.       .+  +..++|++|++. ++|.+|+++|+.++.....
T Consensus       163 vG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~  241 (359)
T 2og2_A          163 VGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGY  241 (359)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCC
Confidence            69999999999999999998 6899999999987542       12  235899999988 8999999999987643211


Q ss_pred             CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .            ..+++.+|+.+..++++.+||   +||++||||++.+|+  +|+|| ||+|||+..+.      +.+
T Consensus       242 d------------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~  299 (359)
T 2og2_A          242 D------------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF  299 (359)
T ss_dssp             S------------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred             H------------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHH
Confidence            0            124556788777788899999   999999999999999  99999 99999998653      344


Q ss_pred             Hh-CCCEEEEEecCCc--------chHHhhcCeEEEEeC
Q psy4235         149 AC-ESRIVICAIHQPT--------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       149 ~~-~~~~iii~th~~~--------~~~~~~~d~v~~l~~  178 (197)
                      .+ .+.++|++||...        ..+....+.|.++..
T Consensus       300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~  338 (359)
T 2og2_A          300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV  338 (359)
T ss_dssp             HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred             HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence            43 4889999999421        234456778888877

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.91  E-value=3.3e-24  Score=179.17  Aligned_cols=81  Identities=27%  Similarity=0.374  Sum_probs=72.3

Q ss_pred             ccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhh
Q psy4235          96 RQVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK  169 (197)
Q Consensus        96 ~~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~  169 (197)
                      .++++.+|||||||      |+++|++|+.+|++|||||||++||+..+..+.++|+++..++.++|++||+.  .+...
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~  319 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA  319 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHh
Confidence            46788999999999      66777888889999999999999999999999999999877788999999994  46789


Q ss_pred             cCeEEEEeC
Q psy4235         170 FDTVSLLAH  178 (197)
Q Consensus       170 ~d~v~~l~~  178 (197)
                      ||++++|..
T Consensus       320 ~d~~~~l~~  328 (339)
T 3qkt_A          320 ADHVIRISL  328 (339)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999998863

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.90  E-value=1.7e-23  Score=155.55  Aligned_cols=80  Identities=28%  Similarity=0.368  Sum_probs=73.6

Q ss_pred             ccccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhh
Q psy4235          96 RQVQISGLSGGQRKRLALA------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK  169 (197)
Q Consensus        96 ~~~~~~~LSgGq~qrv~ia------~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~  169 (197)
                      .++++.+||||||||++||      |||+.+|+++||||||++||+.++..+.+.|+++.+++.++|++||+.  .+...
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHh
Confidence            5678999999999999876      899999999999999999999999999999999877789999999996  36789


Q ss_pred             cCeEEEEe
Q psy4235         170 FDTVSLLA  177 (197)
Q Consensus       170 ~d~v~~l~  177 (197)
                      ||++++|.
T Consensus       129 ~d~ii~l~  136 (148)
T 1f2t_B          129 ADHVIRIS  136 (148)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999994

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.89  E-value=3.1e-26  Score=189.59  Aligned_cols=149  Identities=11%  Similarity=0.011  Sum_probs=107.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|+++ |+.|.              +.++|++|++.+++. |+.||+.+......    ......
T Consensus        96 ~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~----~~~~d~  155 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF----PESYNR  155 (312)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS----GGGBCH
T ss_pred             ECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHhcCC----ChHHHH
Confidence            59999999999999999988 55442              457999999998888 99999865321111    111123


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.++++.++ ....+.++..|||||+||+++|++++.+|+|||||||+..+|+..        ..+.+.-..+|+++|
T Consensus       156 ~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a  226 (312)
T 3aez_A          156 RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDA  226 (312)
T ss_dssp             HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEE
T ss_pred             HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEEC
Confidence            56778888887 555567888999999999999999999999999999999998621        122322235567777


Q ss_pred             CCcchHHhhcCeEEEEeC
Q psy4235         161 QPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~  178 (197)
                      +........++|.+.+.+
T Consensus       227 ~~~~~~~R~i~R~~~~rd  244 (312)
T 3aez_A          227 RIEDIEQWYVSRFLAMRT  244 (312)
T ss_dssp             CHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            654334445556544433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.89  E-value=4.3e-24  Score=177.97  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=89.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |++|.|.++|.+.... ..++.++|+++                               
T Consensus       177 ~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------------------------  224 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFFG-------------------------------  224 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEECB-------------------------------
T ss_pred             ECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEeC-------------------------------
Confidence            59999999999999999998 7999999998652111 12233444320                               


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                                               |||+||++||+||..+|+++++||||+       .++.+.|+.+...+.++|+++
T Consensus       225 -------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~  272 (330)
T 2pt7_A          225 -------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTL  272 (330)
T ss_dssp             -------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEE
T ss_pred             -------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEE
Confidence                                     899999999999999999999999998       245677777765445799999


Q ss_pred             cCCcchHHhhcCeEEEEeCC
Q psy4235         160 HQPTSGVFEKFDTVSLLAHG  179 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~g  179 (197)
                      |+..  +...|||+++|.+|
T Consensus       273 H~~~--~~~~~dri~~l~~g  290 (330)
T 2pt7_A          273 HAGS--SEEAFIRLANMSSS  290 (330)
T ss_dssp             ECSS--HHHHHHHHHHHHHT
T ss_pred             cccH--HHHHhhhheehhcC
Confidence            9964  68889999999873

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.89  E-value=6.5e-27  Score=192.66  Aligned_cols=135  Identities=12%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHH-HHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE-HLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|++    +|+|               ++|++|++.+|+. |+++ |+.+..      ...    
T Consensus       132 vGpsGsGKSTLl~lL~gl~----~G~I---------------~~~v~q~~~lf~~-ti~~~ni~~~~------~~~----  181 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIHFL----GGSV---------------LSFANHKSHFWLA-SLADTRAALVD------DAT----  181 (305)
T ss_dssp             ECSSSSSHHHHHHHHHHHH----TCEE---------------ECGGGTTSGGGGG-GGTTCSCEEEE------EEC----
T ss_pred             ECCCCCcHHHHHHHHhhhc----CceE---------------EEEecCccccccc-cHHHHhhccCc------ccc----
Confidence            5999999999999999987    6887               3577888887775 7776 776531      111    


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                       ..+.+.++.+ +.+..+  +..||||||||   ||||+.+|+|||    ||+||+.+...+..              ++
T Consensus       182 -~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------lt  236 (305)
T 2v9p_A          182 -HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LH  236 (305)
T ss_dssp             -HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GT
T ss_pred             -HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------Hh
Confidence             1344555553 443344  78999999999   999999999999    99999999888752              17


Q ss_pred             cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |++.  ....||++ +|++ |++++.|+++++...
T Consensus       237 H~~~--~~~~aD~i-vl~~-G~iv~~g~~~el~~~  267 (305)
T 2v9p_A          237 SRVQ--TFRFEQPC-TDES-GEQPFNITDADWKSF  267 (305)
T ss_dssp             TTEE--EEECCCCC-CCC----CCCCCCHHHHHHH
T ss_pred             CCHH--HHHhCCEE-EEeC-CEEEEeCCHHHHHHH
Confidence            7753  46889999 9987 999999999887433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.88  E-value=5.8e-23  Score=180.72  Aligned_cols=144  Identities=14%  Similarity=0.036  Sum_probs=111.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++++|... +. |+              +.+.|++|++.    ..+.++..   ...    ..     
T Consensus       287 ~G~~GsGKSTLl~~l~g~~~-~~-G~--------------~vi~~~~ee~~----~~l~~~~~---~~g----~~-----  334 (525)
T 1tf7_A          287 TGATGTGKTLLVSRFVENAC-AN-KE--------------RAILFAYEESR----AQLLRNAY---SWG----MD-----  334 (525)
T ss_dssp             EECTTSSHHHHHHHHHHHHH-TT-TC--------------CEEEEESSSCH----HHHHHHHH---TTS----CC-----
T ss_pred             EeCCCCCHHHHHHHHHHHHH-hC-CC--------------CEEEEEEeCCH----HHHHHHHH---HcC----CC-----
Confidence            49999999999999999876 33 42              12456676542    12233221   111    11     


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY-----SANNVVNLLKQLACESRIV  155 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~-----~~~~i~~~l~~l~~~~~~i  155 (197)
                        +.+ +...|+....+.++.+||+||+||+.+|+++..+|++||+| ||++||+.     .+..+.++++.+++.|.|+
T Consensus       335 --~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv  410 (525)
T 1tf7_A          335 --FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG  410 (525)
T ss_dssp             --HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             --HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Confidence              112 23467777788889999999999999999999999999999 99999999     9999999999998889999


Q ss_pred             EEEecCCc---------chHHhhcCeEEEEeCCcE
Q psy4235         156 ICAIHQPT---------SGVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       156 ii~th~~~---------~~~~~~~d~v~~l~~gg~  181 (197)
                      |+++|+..         ..+..+||++++|.+ |+
T Consensus       411 ilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge  444 (525)
T 1tf7_A          411 LFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE  444 (525)
T ss_dssp             EEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred             EEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence            99999971         356789999999987 54

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=1.1e-22  Score=186.30  Aligned_cols=112  Identities=25%  Similarity=0.367  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          79 LNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ..+++. .+..+||.+. +++++.+|||||+|||+||++|+.+|  ++|||||||++||+...++++++|+++++.|.||
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV  434 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL  434 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence            344554 6788999865 79999999999999999999999999  5999999999999999999999999998889999


Q ss_pred             EEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~  193 (197)
                      |+++|+..  +...||+|++|.     ++|++++.|+++++.+
T Consensus       435 IvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          435 FVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             EEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             EEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence            99999973  457899999993     3589999999988754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.88  E-value=2.5e-25  Score=191.71  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=124.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe---eCCc--------ccccceEEEEecC-CCCCCCCCHHHHHHHHHHc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC---PISR--------TVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKL   68 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~   68 (197)
                      +||||||||||+++|+|+.+ +++|.|.++|+   ++..        ..+++.++|++|+ ..+++.+|+.+|+.+.+..
T Consensus       163 vG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~  241 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAED  241 (438)
T ss_dssp             EECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            59999999999999999998 79999999998   4432        1245679999995 5667888999998876532


Q ss_pred             cCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          69 TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      ....                .-......+ .+..||+|| ||++||   +.+|++      |+|||+.....+.+++.++
T Consensus       242 ~~~~----------------~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~  294 (438)
T 2dpy_A          242 FRDR----------------GQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERA  294 (438)
T ss_dssp             HHTT----------------TCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred             HHhC----------------CCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence            1100                000111122 266799999 999999   888887      9999999999999999998


Q ss_pred             Hh---C-CC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235         149 AC---E-SR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL  192 (197)
Q Consensus       149 ~~---~-~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~  192 (197)
                      .+   + |.     ||++++||..   ..+||++++|.+ |+++..+++.++.
T Consensus       295 ~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~~~~~  343 (438)
T 2dpy_A          295 GNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRLAEAG  343 (438)
T ss_dssp             SCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHHHHTT
T ss_pred             HhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCHHHcc
Confidence            76   3 53     8999999974   578999999987 9999888887654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.87  E-value=3.1e-23  Score=169.73  Aligned_cols=165  Identities=15%  Similarity=0.074  Sum_probs=105.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|... +.+| .|.+.+.........+++.++.+...+    ++.+++.... .      .....
T Consensus        41 ~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~-~------~~~~~  108 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI-I------ENGKF  108 (296)
T ss_dssp             EESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH-H------HHTHH
T ss_pred             EeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC-C------CHHHH
Confidence            59999999999999999987 5767 676554443332223333333333221    2333443221 1      01112


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQ-RKRLALAVQLLTEPQILFCDEPTT---G---LDS-YSANNVVNLLKQLACE  151 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq-~qrv~ia~al~~~p~llllDEPts---~---LD~-~~~~~i~~~l~~l~~~  151 (197)
                      .+.+.++++..++.  ....+.++|.++ +||+. |+++..+|+++|+||||+   +   +|. .....+.+.|++++++
T Consensus       109 ~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~  185 (296)
T 1cr0_A          109 DQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS  185 (296)
T ss_dssp             HHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            23344454433331  233456789998 66776 999999999999999999   5   555 6678899999999765


Q ss_pred             -CCEEEEEecCC-cc--------------------hHHhhcCeEEEEeCCcE
Q psy4235         152 -SRIVICAIHQP-TS--------------------GVFEKFDTVSLLAHGGL  181 (197)
Q Consensus       152 -~~~iii~th~~-~~--------------------~~~~~~d~v~~l~~gg~  181 (197)
                       +.+||+++|+. .+                    .+.+.||++++|.+ |.
T Consensus       186 ~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~  236 (296)
T 1cr0_A          186 TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ  236 (296)
T ss_dssp             HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred             hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence             89999999995 12                    57789999999987 44

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.86  E-value=1.6e-23  Score=172.69  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------c--cceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------M--SRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~--~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++ |++|+|.+.|.++....       +  +..++|++|++.++|.+++.+|+.++......
T Consensus       108 vG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d  186 (304)
T 1rj9_A          108 VGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYD  186 (304)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCS
T ss_pred             ECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCC
Confidence            59999999999999999998 69999999999874321       1  23589999999999999999999865321100


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                                  ..+++..|+.+.....+.+|   ++||++||||++.+|+.++|     .||+.+...+.+.++.+.+.
T Consensus       187 ------------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~  246 (304)
T 1rj9_A          187 ------------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEA  246 (304)
T ss_dssp             ------------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHH
T ss_pred             ------------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHH
Confidence                        01222334433333334444   48999999999999995444     55555556677777777654


Q ss_pred             -CCEEEEEecCC
Q psy4235         152 -SRIVICAIHQP  162 (197)
Q Consensus       152 -~~~iii~th~~  162 (197)
                       +.++|++||+.
T Consensus       247 ~~~t~iivTh~d  258 (304)
T 1rj9_A          247 VGLTGVIVTKLD  258 (304)
T ss_dssp             HCCSEEEEECTT
T ss_pred             cCCcEEEEECCc
Confidence             88999999985

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.85  E-value=9.7e-27  Score=183.32  Aligned_cols=159  Identities=11%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCH-HHHHHHHHHccCC-ccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTV-LEHLQFMAKLTMD-RRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv-~e~l~~~~~~~~~-~~~   74 (197)
                      +||||||||||+|+|+|++  |  |+|.+ |.++...    ..++.++|+||++.+|+.++. .+++.+. ..... ...
T Consensus        29 vGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~g~  102 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD-NYANNFYGT  102 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE-EETTEEEEE
T ss_pred             ECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh-hcccccCCC
Confidence            5999999999999999986  3  99999 7765322    123568999998776654431 1111100 00000 011


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL-----AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~i-----a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .    ...++++++...+. ..+   .+|||||+||++|     +++++.+|++++||||++++|..+...+.+.+..+.
T Consensus       103 ~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~  174 (218)
T 1z6g_A          103 L----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN  174 (218)
T ss_dssp             E----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             c----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            1    13456666654321 222   5799999999999     899999999999999999999999999988887764


Q ss_pred             h-------CCCEEEEEecCCcchHHhhcCeEE
Q psy4235         150 C-------ESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus       150 ~-------~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      .       .....|+++|+. +++...+++++
T Consensus       175 ~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii  205 (218)
T 1z6g_A          175 IELHEANLLNFNLSIINDDL-TLTYQQLKNYL  205 (218)
T ss_dssp             HHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred             HHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence            3       234556666664 34555555543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.84  E-value=1.6e-24  Score=190.61  Aligned_cols=148  Identities=13%  Similarity=0.055  Sum_probs=105.2

Q ss_pred             CCCCCCcHHHHHHH--HhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAA--LNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~--i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++  ++|+.+ |++|.|+++|++....  ...+.+||++|++...+.      +.+   ......   
T Consensus        45 ~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~~---  111 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASPD---  111 (525)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCCC---
T ss_pred             EcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCcc---
Confidence            59999999999999  689987 6899999999884221  223567999997542211      100   000000   


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT-----GLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~~  151 (197)
                          ....++++.+++.+..++.+..||+|             +|+++++||||+     ++|+..++.+.++++.+++.
T Consensus       112 ----~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~  174 (525)
T 1tf7_A          112 ----PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI  174 (525)
T ss_dssp             ----SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC
Confidence                00112334445555556666677776             478999999997     46999999999999999888


Q ss_pred             CCEEEEEecCCcch--------HHhhcCeEEEEeC
Q psy4235         152 SRIVICAIHQPTSG--------VFEKFDTVSLLAH  178 (197)
Q Consensus       152 ~~~iii~th~~~~~--------~~~~~d~v~~l~~  178 (197)
                      |.|+|+++|+..+.        +..+||++++|++
T Consensus       175 g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          175 GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             CCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            99999999998532        3456999999986

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.83  E-value=2.9e-22  Score=187.29  Aligned_cols=134  Identities=21%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+| |++. +                +.+..+||||++.   .+||.+++.                 
T Consensus       795 tGpNgsGKSTlLr~i-Gl~~-~----------------~aqiG~~Vpq~~~---~l~v~d~I~-----------------  836 (1022)
T 2o8b_B          795 TGPNMGGKSTLMRQA-GLLA-V----------------MAQMGCYVPAEVC---RLTPIDRVF-----------------  836 (1022)
T ss_dssp             ECCTTSSHHHHHHHH-HHHH-H----------------HHTTTCCEESSEE---EECCCSBEE-----------------
T ss_pred             ECCCCCChHHHHHHH-HHHH-H----------------HhheeEEeccCcC---CCCHHHHHH-----------------
Confidence            599999999999999 9876 2                1233349999753   345555431                 


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA-NNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~~~-~~~iii~  158 (197)
                             .++|+.+...+..+.+|+++++ +++|++++.+|+++|||||++|+|+... ..++.+|+.++++ +.++|++
T Consensus       837 -------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~  908 (1022)
T 2o8b_B          837 -------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS  908 (1022)
T ss_dssp             -------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             -------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence                   0123333333445678887775 9999999999999999999999999985 5578999999876 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                      ||+. +.+...+|++.++ + |++.
T Consensus       909 TH~~-el~~~~~d~~~v~-~-g~~~  930 (1022)
T 2o8b_B          909 THYH-SLVEDYSQNVAVR-L-GHMA  930 (1022)
T ss_dssp             CCCH-HHHHHTSSCSSEE-E-EEEE
T ss_pred             eCCH-HHHHHhCCcceee-c-CeEE
Confidence            9996 4677889998877 3 6665

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.83  E-value=2.4e-24  Score=167.82  Aligned_cols=136  Identities=14%  Similarity=0.090  Sum_probs=108.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|++. |                   .++|++|++.++  ..+|+.++..+....  ....    
T Consensus        12 ~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~--~~~~----   65 (211)
T 3asz_A           12 AGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYDH--PDAF----   65 (211)
T ss_dssp             EESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS--GGGB----
T ss_pred             ECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCCC--hhhh----
Confidence            59999999999999999876 3                   378999998776  567898886543211  1111    


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHH
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQR----KRLALAVQLLTEPQILFCDEPTTG-------LDSYSANNVVNLLKQ  147 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~----qrv~ia~al~~~p~llllDEPts~-------LD~~~~~~i~~~l~~  147 (197)
                      ..+.+.+.++.+++.+..+.++.++|+|++    ||+++|++++.+|+++++||||++       ||+....++.+.+++
T Consensus        66 ~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r  145 (211)
T 3asz_A           66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR  145 (211)
T ss_dssp             CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence            234567778888887777788999999974    788999999999999999999999       999999999999887


Q ss_pred             H-HhCCCEEEEEecCC
Q psy4235         148 L-ACESRIVICAIHQP  162 (197)
Q Consensus       148 l-~~~~~~iii~th~~  162 (197)
                      . .++|.+++.++|+.
T Consensus       146 ~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          146 DVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHHSCCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHH
Confidence            5 45688888888874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.82  E-value=1.1e-22  Score=181.73  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC------cccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS------RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +|||||||||||++|+|+..|.++|.|+++|.++.      ...+++.++|++|++.+++.+||.+|+.+......... 
T Consensus        51 vG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-  129 (608)
T 3szr_A           51 IGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-  129 (608)
T ss_dssp             CCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-
T ss_pred             ECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-
Confidence            79999999999999999987337999999999862      12456779999999999999999999987543210000 


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHH
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP------TTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l  148 (197)
                                     .++..              +++.++.+....|+++|+|||      |+|||+..+.++.++++++
T Consensus       130 ---------------~~~s~--------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~  180 (608)
T 3szr_A          130 ---------------MGISH--------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY  180 (608)
T ss_dssp             ---------------SCCCS--------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred             ---------------cccch--------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence                           01110              112222233458999999999      9999999999999999997


Q ss_pred             HhC--CCEEEEEecCCcc------hHHhh-----cCeEEEEeCCcEEEEecChh
Q psy4235         149 ACE--SRIVICAIHQPTS------GVFEK-----FDTVSLLAHGGLLAYHGQVS  189 (197)
Q Consensus       149 ~~~--~~~iii~th~~~~------~~~~~-----~d~v~~l~~gg~i~~~g~~~  189 (197)
                      ..+  +.++++++|+...      .+...     ...++++.+ +-++..|+.+
T Consensus       181 l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~~  233 (608)
T 3szr_A          181 IQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTED  233 (608)
T ss_dssp             TTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSSTT
T ss_pred             HhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccHH
Confidence            433  5677888887541      11111     234667766 5554555543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.82  E-value=6.8e-22  Score=155.13  Aligned_cols=139  Identities=19%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-C-----ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-L-----VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~-----~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+++|+|...+ +     ..|.+++++.+...   .+.+++++|...+++. |+.+|+.+..        
T Consensus        31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~~~~--------   98 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIYVAR--------   98 (231)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEEEEE--------
T ss_pred             ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEEEEe--------
Confidence            599999999999999996542 2     34477777754211   1235666666655554 5555543211        


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHH-HHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH---------
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGG-QRKRLALAVQLL-------TEPQILFCDEPTTGLDSYS---------  137 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG-q~qrv~ia~al~-------~~p~llllDEPts~LD~~~---------  137 (197)
                                                 ..+.+ +++.+..+++++       .+|+++++|||++++|+..         
T Consensus        99 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r  151 (231)
T 4a74_A           99 ---------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER  151 (231)
T ss_dssp             ---------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred             ---------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence                                       11112 222233344444       4999999999999999842         


Q ss_pred             ---HHHHHHHHHHHHhC-CCEEEEEecCCc---chHHhhcCeEEEEeC
Q psy4235         138 ---ANNVVNLLKQLACE-SRIVICAIHQPT---SGVFEKFDTVSLLAH  178 (197)
Q Consensus       138 ---~~~i~~~l~~l~~~-~~~iii~th~~~---~~~~~~~d~v~~l~~  178 (197)
                         ..++++.|.+++++ +.|||+++|...   ..+...||+++++++
T Consensus       152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~  199 (231)
T 4a74_A          152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK  199 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence               23678888877654 899999999532   137889999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.82  E-value=1.9e-23  Score=172.02  Aligned_cols=142  Identities=17%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             CCCCCCcHHHHHHHHhcC-cCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKR-VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|. .. |++| |.++|.++......+.++|++|.+.++..+|++|++.++......        
T Consensus        24 vG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~--------   93 (301)
T 2qnr_A           24 VGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR--------   93 (301)
T ss_dssp             EEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC-----------------
T ss_pred             ECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH--------
Confidence            699999999999999997 66 6889 888887764322234579999998888889999988775322100        


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTG-LDSYSANNVVNLLKQLACE-SRIVIC  157 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~-LD~~~~~~i~~~l~~l~~~-~~~iii  157 (197)
                       +....+.+.  +.+..++++.++|||||||+.+|||++    ++++||||++ ||+...    ++++++..+ +.++++
T Consensus        94 -e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~  162 (301)
T 2qnr_A           94 -DCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVI  162 (301)
T ss_dssp             ---CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEE
T ss_pred             -HHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEE
Confidence             011111111  123345778899999999999999885    9999999984 999873    566666554 667888


Q ss_pred             EecCCc
Q psy4235         158 AIHQPT  163 (197)
Q Consensus       158 ~th~~~  163 (197)
                      +.||..
T Consensus       163 ~K~Dl~  168 (301)
T 2qnr_A          163 AKADTL  168 (301)
T ss_dssp             CCGGGS
T ss_pred             EeCCCC
Confidence            888864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.82  E-value=4e-21  Score=155.20  Aligned_cols=115  Identities=20%  Similarity=0.336  Sum_probs=82.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ |+ +|+|.++|.++... .+..+++++|.                              
T Consensus        31 ~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------------------------   78 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------------------------   78 (261)
T ss_dssp             ECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------------------------
T ss_pred             ECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcceee-cCCcceeeeHH------------------------------
Confidence            59999999999999999987 67 89999998775311 01111222221                              


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                               .++++.      ..|      |++||++|..+|+++++||||   |+.+...++   +. +..|.++++++
T Consensus        79 ---------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~  130 (261)
T 2eyu_A           79 ---------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTL  130 (261)
T ss_dssp             ---------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEE
T ss_pred             ---------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEe
Confidence                     123321      122      899999999999999999999   988865443   33 34689999999


Q ss_pred             cCCcchHHhhcCeEEEEe
Q psy4235         160 HQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~  177 (197)
                      |+..  +...|||+++|.
T Consensus       131 H~~~--~~~~~dri~~l~  146 (261)
T 2eyu_A          131 HTNT--AIDTIHRIVDIF  146 (261)
T ss_dssp             CCSS--HHHHHHHHHHTS
T ss_pred             Ccch--HHHHHHHHhhhc
Confidence            9963  567888876553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.81  E-value=7.6e-22  Score=165.38  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=111.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+++|+|+.+ |+.|.|.+.|++...          ..+.+.+.+++|.+.     +..+.+......  
T Consensus        77 iG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~--  148 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA--  148 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH--
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH--
Confidence            59999999999999999998 799999999875211          012345677777432     233332211100  


Q ss_pred             CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                                ..+.+.+...+-. -..-..+..||+|| ||+++|   +.+|++      |+|+|+.....+.+++.++.
T Consensus       149 ----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~  208 (347)
T 2obl_A          149 ----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAG  208 (347)
T ss_dssp             ----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred             ----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence                      0111111111110 00114678899999 899999   578876      99999999999999999987


Q ss_pred             h--CCC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         150 C--ESR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       150 ~--~~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      +  .|.     ||+++|||..   ..+||+++++.+ |+++.++++.++
T Consensus       209 ~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l~~~  253 (347)
T 2obl_A          209 PAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTRELAEE  253 (347)
T ss_dssp             ECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHHHTT
T ss_pred             CCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCHHHc
Confidence            4  466     8899999874   578999999987 999988887765

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.81  E-value=2.2e-19  Score=136.52  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=68.3

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235          96 RQVQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus        96 ~~~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d  171 (197)
                      ..+++..||||||||++||++|+.    .|+++||||||++||+.++..+.++|+++++ +.++|++||+.  .....||
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad  134 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANAD  134 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCS
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCC
Confidence            345678999999999999999974    4699999999999999999999999999865 46788999985  4678999


Q ss_pred             eEEEEe
Q psy4235         172 TVSLLA  177 (197)
Q Consensus       172 ~v~~l~  177 (197)
                      +++.+.
T Consensus       135 ~i~~v~  140 (173)
T 3kta_B          135 KIIGVS  140 (173)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.81  E-value=4.5e-20  Score=170.93  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             CCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         101 SGLSGGQRKRLALAVQL--LTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      ..+|+++.++..+|+++  +.+|+++||||||+|+|+.....+ ..+++.++++ |.++|++||+.  ++..+||++..+
T Consensus       720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v  797 (934)
T 3thx_A          720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTV  797 (934)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTE
T ss_pred             HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhccccee
Confidence            45788888888888887  899999999999999999999888 7777888764 89999999994  467899999888


Q ss_pred             eCCcEEEEecChhH
Q psy4235         177 AHGGLLAYHGQVSK  190 (197)
Q Consensus       177 ~~gg~i~~~g~~~~  190 (197)
                      .+ |++...++.++
T Consensus       798 ~n-g~v~~~~~~~~  810 (934)
T 3thx_A          798 NN-LHVTALTTEET  810 (934)
T ss_dssp             EE-EEEEEEEETTE
T ss_pred             Ee-eEEEEEecCCc
Confidence            87 88876665544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.80  E-value=4.8e-22  Score=158.77  Aligned_cols=136  Identities=10%  Similarity=0.081  Sum_probs=94.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|+|++     |.+.++       ..++.++|++|+. +++.+|+.+++.+.......... .....
T Consensus        31 ~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~-~~~~~   96 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHP-DAFDN   96 (245)
T ss_dssp             ECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSG-GGBCH
T ss_pred             ECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCc-ccccH
Confidence            4999999999999999865     223232       2356689999985 77889999998875432211100 00112


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.+.++.+  .+..+.++..||+||+||+.+ ++++.+|+++|+|||....+..        +.++  .+.+|++++|
T Consensus        97 ~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th  163 (245)
T 2jeo_A           97 DLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTD  163 (245)
T ss_dssp             HHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECC
T ss_pred             HHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECC
Confidence            3344555543  345667889999999999988 5888899999999998887763        2222  2678999999


Q ss_pred             CCc
Q psy4235         161 QPT  163 (197)
Q Consensus       161 ~~~  163 (197)
                      +..
T Consensus       164 ~~~  166 (245)
T 2jeo_A          164 SDV  166 (245)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            743

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.79  E-value=1.2e-22  Score=156.73  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++  ++| |.++|.++.. ..+++.+||++|+..  ...   +++.   ....  ...    
T Consensus         7 ~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l~---~~~~--~~~----   69 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPLS---RVGL--EPP----   69 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEEE---ECCC--CCC----
T ss_pred             ECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehhh---cccc--cCC----
Confidence            59999999999999999875  789 9999987743 234677899999751  111   1110   0000  000    


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRL-ALAV---QLLTEPQILFCDE--PTTGLDSYSANNVVNLLKQLACESR  153 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-~ia~---al~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~~~~  153 (197)
                               ...-.....++...+|+|||+++ ++++   |++.+|++||+||  |+..+|+...+.+.++++    ...
T Consensus        70 ---------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~  136 (189)
T 2i3b_A           70 ---------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPG  136 (189)
T ss_dssp             ---------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSS
T ss_pred             ---------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCC
Confidence                     00011234556667999999988 4454   6899999999999  899999986666666554    333


Q ss_pred             EEEE----EecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235         154 IVIC----AIHQPTSGVFEKFDTVSLLAHGGLLAY  184 (197)
Q Consensus       154 ~iii----~th~~~~~~~~~~d~v~~l~~gg~i~~  184 (197)
                      ++|+    ++|+..   ..++|++..+.+ |+++.
T Consensus       137 ~~ilgti~vsh~~~---~~~vd~i~~~~~-~~i~~  167 (189)
T 2i3b_A          137 TIILGTIPVPKGKP---LALVEEIRNRKD-VKVFN  167 (189)
T ss_dssp             CCEEEECCCCCSSC---CTTHHHHHTTCC-SEEEE
T ss_pred             cEEEEEeecCCCCc---hHHHHHHeecCC-cEEEE
Confidence            4443    237642   245555555544 56543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.79  E-value=6.9e-21  Score=173.46  Aligned_cols=117  Identities=20%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|+|+...+..|.+.      .  ..+..+++++|   +++.+++.||+..                
T Consensus       582 ~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~d~l~~----------------  634 (765)
T 1ewq_A          582 TGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGASDDLAG----------------  634 (765)
T ss_dssp             ESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC----------------------
T ss_pred             ECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHHHHHHh----------------
Confidence            5999999999999999986323556532      1  11345778776   5666677666432                


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL--LTEPQILFCDEP---TTGLDSYSA-NNVVNLLKQLACESRI  154 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al--~~~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~  154 (197)
                                           .+|+|+++++.+++++  +.+|+++|||||   |++||+.+. ..+.+.|.+   .+.+
T Consensus       635 ---------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~  690 (765)
T 1ewq_A          635 ---------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAY  690 (765)
T ss_dssp             ---------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCE
T ss_pred             ---------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCE
Confidence                                 2588999999999999  999999999999   999999876 467877766   4789


Q ss_pred             EEEEecCCcchHHhhc
Q psy4235         155 VICAIHQPTSGVFEKF  170 (197)
Q Consensus       155 iii~th~~~~~~~~~~  170 (197)
                      +|++||+.  ....++
T Consensus       691 vl~~TH~~--~l~~~~  704 (765)
T 1ewq_A          691 TLFATHYF--ELTALG  704 (765)
T ss_dssp             EEEECCCH--HHHTCC
T ss_pred             EEEEeCCH--HHHHhh
Confidence            99999985  344554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.78  E-value=3.3e-19  Score=156.53  Aligned_cols=78  Identities=24%  Similarity=0.306  Sum_probs=71.1

Q ss_pred             ccCCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235          98 VQISGL-SGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus        98 ~~~~~L-SgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      +++..| ||||+|||+||++|+.+|  ++|||||||+|||+.++..+.++|+++++ +.+||++||++.  +...||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEE
Confidence            356777 999999999999999999  99999999999999999999999999987 899999999963  456799999


Q ss_pred             EEeC
Q psy4235         175 LLAH  178 (197)
Q Consensus       175 ~l~~  178 (197)
                      +|.+
T Consensus       469 ~~~~  472 (517)
T 4ad8_A          469 KVEK  472 (517)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9965

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.78  E-value=5.1e-20  Score=170.20  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCcchHHhhcCe
Q psy4235          95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLAC-ESRIVICAIHQPTSGVFEKFDT  172 (197)
Q Consensus        95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~-~~~~iii~th~~~~~~~~~~d~  172 (197)
                      ...+..+.+|+||+|++.|+++ +.+|+++|||||++|||+.....+. .+++.+.+ .|.++|++||+..  +..++|+
T Consensus       728 ~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~  804 (918)
T 3thx_B          728 NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN  804 (918)
T ss_dssp             ------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred             HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence            3344567899999999999999 8999999999999999999999987 77888865 5899999999953  4566664

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.77  E-value=5.5e-19  Score=143.42  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=96.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||++.+++...   .|.++ .|.+...   ...+.|+..+....   .+...+.   .....  ..    .
T Consensus        36 ~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~~~~---~~~~r~~---~~g~~--~~----~   96 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAEDPPT---AIHHRLH---ALGAH--LS----A   96 (279)
T ss_dssp             EESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSSCHH---HHHHHHH---HHHTT--SC----H
T ss_pred             EcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCCCHH---HHHHHHH---HHHhh--cC----h
Confidence            49999999999999998543   46553 3544321   23467776543210   1112221   11110  11    1


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCCE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT--GLDSYSA---NNVVNLLKQLAC-ESRI  154 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts--~LD~~~~---~~i~~~l~~l~~-~~~~  154 (197)
                      ....++++.+.+.+..++++..||+||+|++   ++++.+|+++|+|||++  ++|....   .++++.|+++++ .|.|
T Consensus        97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t  173 (279)
T 1nlf_A           97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS  173 (279)
T ss_dssp             HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred             hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence            2355678888888888889999999998765   68889999999999999  9998544   788888988864 5899


Q ss_pred             EEEEecCCc
Q psy4235         155 VICAIHQPT  163 (197)
Q Consensus       155 iii~th~~~  163 (197)
                      ||+++|+..
T Consensus       174 vi~i~H~~~  182 (279)
T 1nlf_A          174 IVFLHHASK  182 (279)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEecCCC
Confidence            999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.77  E-value=1.3e-20  Score=158.10  Aligned_cols=125  Identities=21%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-CCce----eE-EEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-GLVQ----GE-ILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-~~~~----G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||++.+++... +|++    |+ |++++++..   .++++++++|...+++. ++.+|+.+..      ..
T Consensus       137 ~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni~~~~------~~  206 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYVAR------AF  206 (349)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGEEEEE------CC
T ss_pred             ECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCEEEEe------cC
Confidence            49999999999999999872 2566    68 888887642   13456778887665544 5555543210      00


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH----------
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-------TEPQILFCDEPTTGLDSYS----------  137 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-------~~p~llllDEPts~LD~~~----------  137 (197)
                                                  -|.+++|++.++++++       .+|+++|+||||+++|+..          
T Consensus       207 ----------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~  258 (349)
T 1pzn_A          207 ----------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ  258 (349)
T ss_dssp             ----------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH
T ss_pred             ----------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH
Confidence                                        1345667777777776       6899999999999999862          


Q ss_pred             --HHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy4235         138 --ANNVVNLLKQLAC-ESRIVICAIHQPT  163 (197)
Q Consensus       138 --~~~i~~~l~~l~~-~~~~iii~th~~~  163 (197)
                        ..+++..|+.+++ .+.++|+++|...
T Consensus       259 ~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          259 QKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence              3566777777765 4889999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.76  E-value=1.6e-19  Score=151.77  Aligned_cols=116  Identities=26%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ ++ .|.|...+.++.. ......++++|.......++..+                   
T Consensus       129 ~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~-------------------  187 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE-------------------  187 (356)
T ss_dssp             ECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH-------------------
T ss_pred             ECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH-------------------
Confidence            59999999999999999987 56 5777654444422 12223456666433222122111                   


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                                                      +||+||.++|++|++|||+   |+.+    .+.+.+++..|.++++++
T Consensus       188 --------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~  228 (356)
T 3jvv_A          188 --------------------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTL  228 (356)
T ss_dssp             --------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEE
T ss_pred             --------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEE
Confidence                                            9999999999999999999   6554    444445566799999999


Q ss_pred             cCCcchHHhhcCeEEEEeC
Q psy4235         160 HQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       160 h~~~~~~~~~~d~v~~l~~  178 (197)
                      |+.. . ...+||++.|..
T Consensus       229 H~~~-~-~~~~dRli~l~~  245 (356)
T 3jvv_A          229 HTTS-A-AKTIDRVVDVFP  245 (356)
T ss_dssp             SCSS-H-HHHHHHHHHTSC
T ss_pred             ccCh-H-HHHHHHHhhhcC
Confidence            9974 3 488999887743

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.76  E-value=7.5e-19  Score=147.73  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             cccCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchH
Q psy4235          97 QVQIS-GLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV  166 (197)
Q Consensus        97 ~~~~~-~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~  166 (197)
                      ++++. .||+|||||++||++|+         .+|++|||||||++||+..+..+++.++++.   .++|++||. . . 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence            34566 79999999999999999         8999999999999999999999999998874   688888883 3 3 


Q ss_pred             HhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         167 FEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       167 ~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                        .||+++++++ |+++..|+++++
T Consensus       333 --~~~~i~~l~~-G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 --GAALTLRAQA-GRFTPVADEEMQ  354 (359)
T ss_dssp             --TCSEEEEEET-TEEEECCCTTTS
T ss_pred             --cCCEEEEEEC-CEEEecCCHHHH
Confidence              8999999987 899999988765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.75  E-value=4.5e-19  Score=138.85  Aligned_cols=148  Identities=11%  Similarity=0.040  Sum_probs=95.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc---ceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~---~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||++.|++... +..|.|.+.+.+.......   ..+++.+|..... .+.+         .   ....  
T Consensus        29 ~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~---~~~~--   92 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII---------I---DALM--   92 (235)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE---------E---ECCC--
T ss_pred             EcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE---------E---eccc--
Confidence            59999999999999998776 4667777655443221111   1122222211000 0000         0   0000  


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CC
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGL--DSYSANNVVNLLKQLAC-ES  152 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~L--D~~~~~~i~~~l~~l~~-~~  152 (197)
                                ..++ ...   .....|.++.++...+.+...+|+  ++++||||+.+  |+....++++.|+++++ .+
T Consensus        93 ----------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~  158 (235)
T 2w0m_A           93 ----------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN  158 (235)
T ss_dssp             ---------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred             ----------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence                      0000 011   123449999998888888888999  99999999887  99999999999999865 48


Q ss_pred             CEEEEEecCCc-------chHHhhcCeEEEEeC
Q psy4235         153 RIVICAIHQPT-------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       153 ~~iii~th~~~-------~~~~~~~d~v~~l~~  178 (197)
                      .++|+++|+..       ..+.++||++++|+.
T Consensus       159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRR  191 (235)
T ss_dssp             EEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred             CeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence            89999999862       247889999999975

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.73  E-value=3.6e-19  Score=162.93  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=86.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||||+|+|+......|      ..+..  ....+++++|   +++.+++.+|+...               
T Consensus       613 tGpNGsGKSTlLr~iagl~~~~q~G------~~vpa--~~~~i~~~~~---i~~~~~~~d~l~~~---------------  666 (800)
T 1wb9_A          613 TGPNMGGKSTYMRQTALIALMAYIG------SYVPA--QKVEIGPIDR---IFTRVGAADDLASG---------------  666 (800)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS--SEEEECCCCE---EEEEEC-----------------------
T ss_pred             ECCCCCChHHHHHHHHHHHHHHhcC------cccch--hcccceeHHH---HHhhCCHHHHHHhh---------------
Confidence            5999999999999999975311222      22211  1233566655   56666666665321               


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~  158 (197)
                                         .+.+|+++++ ++.+...+.+|+++|||||++|+|+.....+ ..+++.+.++ +.++|++
T Consensus       667 -------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~  726 (800)
T 1wb9_A          667 -------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA  726 (800)
T ss_dssp             ----------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             -------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence                               1235666654 4444556899999999999999999888775 7888888874 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                      ||+..  +..+||++..+.+ +.+.
T Consensus       727 TH~~e--l~~l~d~~~~v~n-~~~~  748 (800)
T 1wb9_A          727 THYFE--LTQLPEKMEGVAN-VHLD  748 (800)
T ss_dssp             CSCGG--GGGHHHHSTTEEE-EEEE
T ss_pred             eCCHH--HHHHhhhhhceEE-EEEE
Confidence            99963  4568887655554 4443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.72  E-value=2.9e-22  Score=166.14  Aligned_cols=156  Identities=16%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc--------CCCceeEEEECCeeCCcc------------------cccceEEEE---ecCCC
Q psy4235           1 MSPSGAGKTTLLAALNKRV--------KGLVQGEILLNGCPISRT------------------VMSRISGYV---AQQDF   51 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~--------~~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~q~~~   51 (197)
                      +|+||||||||+|.|+|..        . ++.|+|.++|.++...                  .+.+.++++   +|+..
T Consensus        10 ~G~~GaGKTTll~~l~~~~~~~~~aVi~-~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~   88 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNEQHGYKIAVIE-NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGN   88 (318)
T ss_dssp             EESSSSSCHHHHHHHHHSCCCCCEEEEC-SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred             EecCCCCHHHHHHHHHhhcCCCcEEEEE-ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCC
Confidence            4999999999999999986        5 6899999999887432                  122346666   67766


Q ss_pred             CCCCCCHHHHHHHHHHccCCcc---ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy4235          52 LIEELTVLEHLQFMAKLTMDRR---TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDE  128 (197)
Q Consensus        52 ~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDE  128 (197)
                      +++..++.||..++........   .........+..++..+++.+..++.. ++|+||+||+..+++++.+|+++  ||
T Consensus        89 ~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de  165 (318)
T 1nij_A           89 IQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GE  165 (318)
T ss_dssp             CCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SC
T ss_pred             CCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CH
Confidence            6667777776654210000000   000000001122333344444444333 79999999999888888999987  88


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235         129 PTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus       129 Pts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d  171 (197)
                      |         .++.+.+++++ .+.+|++++|+.. .+..++|
T Consensus       166 ~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~  197 (318)
T 1nij_A          166 A---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN  197 (318)
T ss_dssp             T---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred             H---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence            8         77888888875 5789999999754 3444433

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.72  E-value=9.1e-20  Score=143.65  Aligned_cols=135  Identities=19%  Similarity=0.178  Sum_probs=90.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCH----HHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV----LEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv----~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+|+|+|+.+| +.+|.|.+.+.+.... .++.++|+||++..|+.+++    .||+.+....+   ...
T Consensus        22 ~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y---g~~   97 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY---GTS   97 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE---EEE
T ss_pred             ECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC---CCC
Confidence            599999999999999999873 3789999988765332 23457999998776666555    33332211110   000


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                          .+.                               +..++..++++|||     ||+.++.++.+.+.    ++.+|
T Consensus        98 ----~~~-------------------------------v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI  133 (219)
T 1s96_A           98 ----REA-------------------------------IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSI  133 (219)
T ss_dssp             ----HHH-------------------------------HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEE
T ss_pred             ----HHH-------------------------------HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEE
Confidence                011                               22333447999999     99999999998875    57899


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++++|+.. .+..   |+  +.. |    .++++++...
T Consensus       134 ~i~th~~~-~l~~---Rl--~~r-G----~~~~e~i~~r  161 (219)
T 1s96_A          134 FILPPSKI-ELDR---RL--RGR-G----QDSEEVIAKR  161 (219)
T ss_dssp             EEECSSHH-HHHH---HH--HTT-S----CSCHHHHHHH
T ss_pred             EEECCCHH-HHHH---HH--HHc-C----CCCHHHHHHH
Confidence            99999864 4444   32  544 5    4677776544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.72  E-value=5.4e-21  Score=152.59  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             CCCCCCcHHHHHHHHh---cCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc--cC---Cc
Q psy4235           1 MSPSGAGKTTLLAALN---KRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL--TM---DR   72 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~---g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~--~~---~~   72 (197)
                      +||||||||||+++|+   |+.. +++|+|.++|.+... .....+.+++|+..+++..++.+++......  ..   ..
T Consensus        33 ~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~  110 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLD  110 (246)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            5999999999999999   9987 789999887765321 2233456677888888888999999874321  00   00


Q ss_pred             cccHHHHHHHHHHHHH--HcC------------CcccccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe----CCCCCC
Q psy4235          73 RTTWLELNKTITRVME--NLG------------INHRRQVQISGLSGGQRKRLALAVQL-LTEPQILFCD----EPTTGL  133 (197)
Q Consensus        73 ~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgGq~qrv~ia~al-~~~p~llllD----EPts~L  133 (197)
                      ......  ..+..+..  .++            +....++++..|||    |+   +|+ +.+|++++||    |||++|
T Consensus       111 g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~l  181 (246)
T 2bbw_A          111 GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQ  181 (246)
T ss_dssp             SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCC
T ss_pred             CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccC
Confidence            111111  12222221  223            23345677889999    65   777 9999999999    999999


Q ss_pred             CHHHHHHHHHHHHHHHhC
Q psy4235         134 DSYSANNVVNLLKQLACE  151 (197)
Q Consensus       134 D~~~~~~i~~~l~~l~~~  151 (197)
                      |+.+...+.+.++++.++
T Consensus       182 d~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          182 EDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             GGGSHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHh
Confidence            999999999999988765

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.72  E-value=5.8e-17  Score=136.79  Aligned_cols=80  Identities=23%  Similarity=0.374  Sum_probs=69.6

Q ss_pred             ccCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235          98 VQISGLSGGQRKRL------ALAVQLLTE-PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF  170 (197)
Q Consensus        98 ~~~~~LSgGq~qrv------~ia~al~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~  170 (197)
                      +++..|||||+||+      ++|++++.+ |++|||||||++||+..+..+.+.|+++.. +.+||++||++ . +...|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~-~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR-E-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG-G-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH-H-HHhhC
Confidence            56689999999988      567888999 999999999999999999999999998753 46899999996 3 67899


Q ss_pred             CeEEEEeCCc
Q psy4235         171 DTVSLLAHGG  180 (197)
Q Consensus       171 d~v~~l~~gg  180 (197)
                      |+++++.+.|
T Consensus       353 d~~~~l~k~~  362 (371)
T 3auy_A          353 DVIINVKKDG  362 (371)
T ss_dssp             SEEEEEEESS
T ss_pred             CEEEEEEecC
Confidence            9999998534

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.70  E-value=1.5e-22  Score=155.17  Aligned_cols=166  Identities=11%  Similarity=0.129  Sum_probs=106.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+++|++    +.+|.++++|.++...   ...++++|....++.+++++++.+.........       
T Consensus         8 ~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------   73 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ-------   73 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             ECCCCCcHHHHHHHHhc----ccCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC-------
Confidence            59999999999999986    3678999998765321   234677776655556688888776532210000       


Q ss_pred             HHHHHHHHHcCCcccccccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235          81 KTITRVMENLGINHRRQVQISGL--SGGQRKRLALAV------QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~L--SgGq~qrv~ia~------al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                        ...+++.+. .....+....+  |+|++|++.++.      +++.+|+...+|+   ++|+..... ++.+..+...+
T Consensus        74 --~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~  146 (189)
T 2bdt_A           74 --NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDE  146 (189)
T ss_dssp             --CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCT
T ss_pred             --CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCc
Confidence              000111110 00001112234  888888888888      8999999888884   899988888 88888886667


Q ss_pred             CEEEEEecC-CcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         153 RIVICAIHQ-PTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       153 ~~iii~th~-~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      .++|.++|. + +.+.+.||+|+  ++ |+++..|+++-+
T Consensus       147 ~~ii~tsh~~~-~~~e~~~~~i~--~~-g~~~~~~~~~~~  182 (189)
T 2bdt_A          147 RYFYNTSHLQP-TNLNDIVKNLK--TN-PRFIFCMAGDPL  182 (189)
T ss_dssp             TSEEECSSSCG-GGHHHHHHHHH--HC-GGGSCC------
T ss_pred             cEEEeCCCCCh-hhHHHHHHHHh--hC-CcEEEeecCCch
Confidence            788888987 5 36889999997  65 888888887644

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.69  E-value=7.6e-17  Score=138.42  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235          98 VQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus        98 ~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v  173 (197)
                      +++..||||||||++||++|+    .+|+++||||||++||+..+..+.++|+++..++.++|++||+.  .....||++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~  406 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL  406 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEE
Confidence            345679999999999999999    58999999999999999999999999999876678999999984  457889999


Q ss_pred             EEEeC
Q psy4235         174 SLLAH  178 (197)
Q Consensus       174 ~~l~~  178 (197)
                      +++..
T Consensus       407 ~~~~~  411 (430)
T 1w1w_A          407 VGVYR  411 (430)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.69  E-value=1.7e-19  Score=139.54  Aligned_cols=73  Identities=14%  Similarity=0.059  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCccc-ccccCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          82 TITRVMENLGINHR-RQVQISGLSGGQRKR-LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        82 ~~~~~l~~~~l~~~-~~~~~~~LSgGq~qr-v~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                      .+.++++..++... ...++..+|+||+|| +..+++++.+|+++++|||||++|+....++++.|.++..++.+
T Consensus       128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            45566777777644 366788899999999 89999999999999999999999999999999999998765543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.68  E-value=4e-20  Score=141.47  Aligned_cols=152  Identities=11%  Similarity=0.035  Sum_probs=95.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|.   ++.|.|.++|.++... ...+.++|++|...  +.+++.+|+.+...........    
T Consensus        15 ~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~----   85 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF----   85 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE----
T ss_pred             ECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe----
Confidence            599999999999999996   3689999998775321 11234578887644  4568899887653211000000    


Q ss_pred             HHHHHHHHHHcCCcccc--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235          80 NKTITRVMENLGINHRR--QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC  157 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~--~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii  157 (197)
                       ..++.++..+++....  +.++..+|+|++|++.++|++..+|+++        +|+...+.+.+.++.+......+ +
T Consensus        86 -~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~-i  155 (191)
T 1zp6_A           86 -VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHV-L  155 (191)
T ss_dssp             -EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGE-E
T ss_pred             -EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccE-E
Confidence             0001111112222222  4456789999999999999999999876        68888888888877664433334 4


Q ss_pred             EecCCcchHHhhcCeE
Q psy4235         158 AIHQPTSGVFEKFDTV  173 (197)
Q Consensus       158 ~th~~~~~~~~~~d~v  173 (197)
                      .|++.  .+.+.++++
T Consensus       156 ~t~~~--~~~~~~~~i  169 (191)
T 1zp6_A          156 PVSGK--DTDQALQSA  169 (191)
T ss_dssp             ECTTC--CTTTTTTTT
T ss_pred             ECCCC--CHHHHHHHH
Confidence            45432  124445544

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.67  E-value=2.1e-18  Score=147.56  Aligned_cols=136  Identities=18%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +|+||||||||+++|+|... +..|   .+|.++..  ....+.++|++|.+.+++.+||+||+.+.......  ..+  
T Consensus        37 vG~sGaGKSTLln~L~g~~~-~~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~--~~~--  108 (418)
T 2qag_C           37 VGESGLGKSTLINSLFLTDL-YSPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS--NCW--  108 (418)
T ss_dssp             ECCTTSSHHHHHHHHTTCCC-CCCC---CCSCC-----CCEEEEEECC------CEEEEEEECC-------------C--
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCCC---CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccch--hhH--
Confidence            69999999999999999876 3344   12222211  11234579999998888889999998875432110  000  


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ---ILFCDEPT-TGLDSYSANNVVNLLKQLACESRI  154 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~  154 (197)
                        ..+.+.++            ..++.+++||++|||+++.+|+   +|++|||| ++||+...    .+++.+.. +..
T Consensus       109 --~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~  169 (418)
T 2qag_C          109 --QPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVN  169 (418)
T ss_dssp             --HHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSE
T ss_pred             --HHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCc
Confidence              11112221            1345677889999999999999   99999999 69999873    44455544 667


Q ss_pred             EEEEecCCc
Q psy4235         155 VICAIHQPT  163 (197)
Q Consensus       155 iii~th~~~  163 (197)
                      +|++.|..+
T Consensus       170 iIlVinK~D  178 (418)
T 2qag_C          170 IIPLIAKAD  178 (418)
T ss_dssp             EEEEEESTT
T ss_pred             EEEEEEccc
Confidence            777777643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.66  E-value=2.5e-16  Score=122.46  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=59.1

Q ss_pred             CCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcc-----
Q psy4235         102 GLSGGQ--RKRLALAVQLLTE-PQILFCDEPTTGLDSYS--------ANNVVNLLKQLACE-SRIVICAIHQPTS-----  164 (197)
Q Consensus       102 ~LSgGq--~qrv~ia~al~~~-p~llllDEPts~LD~~~--------~~~i~~~l~~l~~~-~~~iii~th~~~~-----  164 (197)
                      ..|+++  +|+++.+++++.+ |+++++|||++.+|+..        ..++++.|++++++ +.++|+++|....     
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~  163 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM  163 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence            345553  5788888899986 99999999999999743        24466667777654 8899999987531     


Q ss_pred             -------hHHhhcCeEEEEeC
Q psy4235         165 -------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 -------~~~~~~d~v~~l~~  178 (197)
                             .+...||.+++|..
T Consensus       164 ~~p~~~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          164 TKPVAEQTLGYRCKDILRLDK  184 (220)
T ss_dssp             CCSCCCHHHHHTSSEEEEEEE
T ss_pred             cccCCCcceeecCcEEEEEEE
Confidence                   46789999999976

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.65  E-value=3.7e-17  Score=137.13  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-CeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|....+.+|+|.++ |.+... ...+.+++++|+..+++..+++++.     +.   .......
T Consensus       221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~~-----l~---~l~~~e~  291 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREFG-----LW---HLEPEQI  291 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CC---CCCHHHH
T ss_pred             ECCCCccHHHHHHHHhccccccccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHhh-----hc---CCCHHHH
Confidence            699999999999999998761489999987 765432 2345689999998888888888841     11   1223344


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL  117 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al  117 (197)
                      ...+.++++.+++.+..+.++.++| ||+||++||+++
T Consensus       292 ~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          292 TQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             HHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            5667889999999999999999999 999999999874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.65  E-value=6.2e-18  Score=140.59  Aligned_cols=152  Identities=13%  Similarity=0.086  Sum_probs=102.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccce--EEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRI--SGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~--~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +||||||||||+++|+|+++ |++|+|.+.|.++....       +.+.  +.|++|...++|.++|++|+.++......
T Consensus       135 vG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d  213 (328)
T 3e70_C          135 VGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGID  213 (328)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccch
Confidence            59999999999999999998 79999999999975321       1222  45999999999999999999876432111


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-  150 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-  150 (197)
                      .            -+++..|+.+.....+.+||       .+++++..++++++||.++.       +.+.+.++.+.+ 
T Consensus       214 ~------------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~  267 (328)
T 3e70_C          214 V------------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEA  267 (328)
T ss_dssp             E------------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHH
T ss_pred             h------------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHh
Confidence            0            01222343333333333444       48899988888888885543       455666666664 


Q ss_pred             CCCEEEEEecCCcc--------hHHhhcCeEEEEeCC
Q psy4235         151 ESRIVICAIHQPTS--------GVFEKFDTVSLLAHG  179 (197)
Q Consensus       151 ~~~~iii~th~~~~--------~~~~~~d~v~~l~~g  179 (197)
                      .+.++|++||.+..        .+....-.|.++..|
T Consensus       268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~G  304 (328)
T 3e70_C          268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVG  304 (328)
T ss_dssp             SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECS
T ss_pred             cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCC
Confidence            47889999996421        123344567777763

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.64  E-value=1.2e-19  Score=152.77  Aligned_cols=146  Identities=10%  Similarity=-0.015  Sum_probs=89.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce----eEEEEC----CeeCC--cccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ----GEILLN----GCPIS--RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~----G~i~~~----g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~   70 (197)
                      +||||||||||+|+|+|++. |++    |+|+++    |.++.  ...+ +.++|++|+..++. .|+.+|+.+      
T Consensus       176 vG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~-~t~~~nl~~------  246 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYA-VRHSHKIAF------  246 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHH-HHHCSSEEE------
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHH-HhccCCEEE------
Confidence            59999999999999999998 688    777653    22220  0011 12333333221111 122222111      


Q ss_pred             CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHH
Q psy4235          71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-TEPQILFCDE---PT------TGLDSYSANN  140 (197)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-~~p~llllDE---Pt------s~LD~~~~~~  140 (197)
                                         ++ .+..+..+..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..
T Consensus       247 -------------------~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~  306 (365)
T 1lw7_A          247 -------------------ID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ  306 (365)
T ss_dssp             -------------------ES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred             -------------------Ee-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence                               00 11122233456777788888888775 6999999999   65      5899999999


Q ss_pred             HHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235         141 VVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       141 i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~  177 (197)
                      +.+.|+++.+ .+.++++++|. . ....+++++.+++
T Consensus       307 l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~  342 (365)
T 1lw7_A          307 FQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE  342 (365)
T ss_dssp             HHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence            9999988754 37888888875 2 5677888776664

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.63  E-value=5.7e-17  Score=136.97  Aligned_cols=112  Identities=21%  Similarity=0.351  Sum_probs=80.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|+++ ++ +|+|.+.+.++.. ..+..++|++|..                             
T Consensus       142 vG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~-----------------------------  190 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQRE-----------------------------  190 (372)
T ss_dssp             ECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------------------------
T ss_pred             ECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhh-hhccCceEEEeee-----------------------------
Confidence            59999999999999999987 57 8999887766532 2345578888841                             


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                                ++++      +..|      +.+|+++|..+|+++++|||+   |+....   ..++.. ..|.+++.++
T Consensus       191 ----------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~-~~g~~vi~t~  241 (372)
T 2ewv_A          191 ----------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA-ETGHLVFGTL  241 (372)
T ss_dssp             ----------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH-TTTCEEEECC
T ss_pred             ----------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH-hcCCEEEEEE
Confidence                      1111      1233      469999999999999999999   766533   344443 4588888888


Q ss_pred             cCCcchHHhhcCeEE
Q psy4235         160 HQPTSGVFEKFDTVS  174 (197)
Q Consensus       160 h~~~~~~~~~~d~v~  174 (197)
                      |+.  .+...+||++
T Consensus       242 H~~--~~~~~~~rl~  254 (372)
T 2ewv_A          242 HTN--TAIDTIHRIV  254 (372)
T ss_dssp             CCC--SHHHHHHHHH
T ss_pred             Ccc--hHHHHHHHHH
Confidence            874  3667777754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.61  E-value=5.5e-16  Score=129.00  Aligned_cols=142  Identities=11%  Similarity=0.057  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHhc-CcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g-~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      .||||+|||||+++|++ +.. ++.|.+.++|.+.... .....+++++|.+.+....+-  .       .   ......
T Consensus        42 ~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~~~~  108 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------G---NNDRIV  108 (354)
T ss_dssp             ECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CCHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------C---CcchHH
Confidence            49999999999999999 566 6899999999876432 123457888886543211110  0       0   000001


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      .++.+.++.+..++....     .|||           +..+|+++|+|||++ ||+..+..+.+.+.+.. .+.++|++
T Consensus       109 ~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~  170 (354)
T 1sxj_E          109 IQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV  170 (354)
T ss_dssp             HHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred             HHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence            122222332222332221     5566           788999999999999 99999999999998864 36789999


Q ss_pred             ecCCcchHHhhcCeE
Q psy4235         159 IHQPTSGVFEKFDTV  173 (197)
Q Consensus       159 th~~~~~~~~~~d~v  173 (197)
                      ||++......+.+|.
T Consensus       171 t~~~~~l~~~l~sR~  185 (354)
T 1sxj_E          171 CDSMSPIIAPIKSQC  185 (354)
T ss_dssp             ESCSCSSCHHHHTTS
T ss_pred             eCCHHHHHHHHHhhc
Confidence            998754333333443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.59  E-value=1.6e-18  Score=131.57  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCc------cccc-ceEE----EEecCCCCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISR------TVMS-RISG----YVAQQDFLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~ltv~e~l~~~~   66 (197)
                      +|+||||||||+++|+|++. ++   .|.|.++|.++..      ..++ +.++    +++|++.+|-    .+      
T Consensus         8 vG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~------   76 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR------   76 (171)
T ss_dssp             EESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE------
T ss_pred             ECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec------
Confidence            59999999999999999988 56   8999999988432      1233 3456    7888766541    00      


Q ss_pred             HccCCccccHHHHHHHHHHHHHH-c-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCC---CCC
Q psy4235          67 KLTMDRRTTWLELNKTITRVMEN-L-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQIL-------FCDEPTT---GLD  134 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~ll-------llDEPts---~LD  134 (197)
                         .    .. +....+.++++. + +++...-   ..|||||+||++||||++.+|++.       +-|.|..   -+|
T Consensus        77 ---~----~~-~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~  145 (171)
T 2f1r_A           77 ---V----SE-EEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR  145 (171)
T ss_dssp             ---C----CH-HHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred             ---C----Ch-hhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence               0    00 001134455554 4 4433322   249999999999999999999873       2355532   244


Q ss_pred             HHHHHHHHHHHHHHHhCCC
Q psy4235         135 SYSANNVVNLLKQLACESR  153 (197)
Q Consensus       135 ~~~~~~i~~~l~~l~~~~~  153 (197)
                      ....+.+.+++.+...+|.
T Consensus       146 ~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          146 RDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             TTCHHHHHHHHHHHHTC--
T ss_pred             cccHHHHHHHHHHHHhccC
Confidence            5667888888877666654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=4.7e-17  Score=133.84  Aligned_cols=110  Identities=18%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCccc--cc-ceEEEEecCCCCC-----CCCCHHHHH--HHH--
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRTV--MS-RISGYVAQQDFLI-----EELTVLEHL--QFM--   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~~--~~-~~~~~v~q~~~~~-----~~ltv~e~l--~~~--   65 (197)
                      +||||||||||+|+|+ +.. |++|+|.+   +|.+++...  .. +.+||++|.|.+.     +.+|+ ||+  .|.  
T Consensus       171 ~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~  247 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREF  247 (302)
T ss_dssp             ECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGG
T ss_pred             ECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHH
Confidence            5999999999999999 887 79999999   998875431  11 2479999998653     78899 888  443  


Q ss_pred             --H--HccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHH
Q psy4235          66 --A--KLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAV  115 (197)
Q Consensus        66 --~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~  115 (197)
                        .  ..+..  ....+....+.++++.++|.+ ..++++..|||.++|++.|||
T Consensus       248 ~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          248 LRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             HHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence              0  11110  001122356889999999986 788999999998899999986

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.56  E-value=2.8e-15  Score=113.65  Aligned_cols=48  Identities=8%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcch
Q psy4235         118 LTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQPTSG  165 (197)
Q Consensus       118 ~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~  165 (197)
                      +.+|++|+||||++ ++|+..+..+.+++....+++.++|++||...+.
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            34999999999985 9999999999999999887889999999987643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.56  E-value=5.6e-15  Score=116.44  Aligned_cols=60  Identities=18%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCcch------------------HH
Q psy4235         119 TEPQILFCDEPTTGLDSY-------S-----ANNVVNLLKQLACE-SRIVICAIHQPTSG------------------VF  167 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~-------~-----~~~i~~~l~~l~~~-~~~iii~th~~~~~------------------~~  167 (197)
                      .+|+++++|||++.+|+.       .     ..+++..|++++++ +.+||+++|.....                  +.
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            589999999999999985       3     34566666666554 88999999854321                  22


Q ss_pred             hhcCeEEEEeC
Q psy4235         168 EKFDTVSLLAH  178 (197)
Q Consensus       168 ~~~d~v~~l~~  178 (197)
                      ..||.+++|..
T Consensus       198 ~~~d~vi~l~~  208 (243)
T 1n0w_A          198 HASTTRLYLRK  208 (243)
T ss_dssp             CTTCEEEEEEE
T ss_pred             hcCcEEEEEEE
Confidence            37999999986

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=2.9e-16  Score=134.31  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=95.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC---cccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc--c
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT--T   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~--~   75 (197)
                      +||||||||||+|+|+|+.-         +|.++.   ....++.++|++|++.+++.+||.||+.|+.........  .
T Consensus        48 vG~nGaGKSTLln~L~G~~l---------~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i  118 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTKF---------EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI  118 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSCC----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred             ECCCCCCHHHHHHHHhCccc---------cCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence            59999999999999999742         222221   112245689999999988899999998764321100000  0


Q ss_pred             HHHHHHHHHHHHHHc-CCcc----cccccC-----------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy4235          76 WLELNKTITRVMENL-GINH----RRQVQI-----------SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSAN  139 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~  139 (197)
                      .......+.+++... ++..    ..+.++           ..|+-..   +.|+++|..+++++++|||+..|.+....
T Consensus       119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~  195 (427)
T 2qag_B          119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELT  195 (427)
T ss_dssp             HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHH
Confidence            011234455556554 4431    112221           2455555   78999999999999999999999999999


Q ss_pred             HHHHHHHH-HHhCCCEEEEEecCC
Q psy4235         140 NVVNLLKQ-LACESRIVICAIHQP  162 (197)
Q Consensus       140 ~i~~~l~~-l~~~~~~iii~th~~  162 (197)
                      .+.+.+++ +...|..|+.++.+.
T Consensus       196 ~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          196 KFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             HHHHHHHHHHBTTBCCCCCCC---
T ss_pred             HHHHHHHHHHHHcCCcEEecCCCc
Confidence            99999986 777788888877653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.53  E-value=4.3e-16  Score=135.14  Aligned_cols=138  Identities=16%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------c--ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------V--MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD   71 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~   71 (197)
                      +|+||||||||+++|+|++. +++|+|.++|.++...       .  .++.++|++|+..+++.+++++|+.++......
T Consensus       299 VGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~D  377 (503)
T 2yhs_A          299 VGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNID  377 (503)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred             ECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCC
Confidence            69999999999999999998 6899999988776431       1  234689999998888889999999987542211


Q ss_pred             ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-TEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-~~p~-llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ..            +++..|..........+|    +|++.+++++. ..|. +||...|++|.|..      +.++.++
T Consensus       378 vV------------LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~  435 (503)
T 2yhs_A          378 VL------------IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFH  435 (503)
T ss_dssp             EE------------EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHH
T ss_pred             EE------------EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHH
Confidence            00            112222221111112223    47888888764 4563 55555588776544      3344454


Q ss_pred             h-CCCEEEEEecC
Q psy4235         150 C-ESRIVICAIHQ  161 (197)
Q Consensus       150 ~-~~~~iii~th~  161 (197)
                      + -+.+.+|+||-
T Consensus       436 ~~~~itgvIlTKL  448 (503)
T 2yhs_A          436 EAVGLTGITLTKL  448 (503)
T ss_dssp             HHTCCSEEEEECG
T ss_pred             hhcCCCEEEEEcC
Confidence            3 37788899994

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.53  E-value=6.1e-15  Score=124.07  Aligned_cols=119  Identities=17%  Similarity=0.134  Sum_probs=82.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC-CcccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SRTVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~-~~~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|+++ |++|.|.++|..- .....++.++|++ |++.+-                         
T Consensus       181 vG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~-------------------------  234 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEE-------------------------  234 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------------
T ss_pred             ECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCccccc-------------------------
Confidence            59999999999999999998 6999999998532 1112456688998 653310                         


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                                              ++++..++-.|+.++..+|+.+++|||..       .++.+.++.+.....+++.+
T Consensus       235 ------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t  283 (361)
T 2gza_A          235 ------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITS  283 (361)
T ss_dssp             ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEE
T ss_pred             ------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEE
Confidence                                    01222356667777778999999999986       34566777775544577888


Q ss_pred             ecCCcchHHhhcCeEEEEeC
Q psy4235         159 IHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~  178 (197)
                      +|..  .+...+||+..+..
T Consensus       284 ~H~~--~~~~~~~Rl~~l~~  301 (361)
T 2gza_A          284 CHAG--SCELTFERLALMVL  301 (361)
T ss_dssp             EECS--SHHHHHHHHHHHHT
T ss_pred             ECCC--CHHHHHHHHHHHHh
Confidence            8985  36788888877765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.53  E-value=5.2e-15  Score=109.64  Aligned_cols=45  Identities=9%  Similarity=0.119  Sum_probs=37.5

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy4235         118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPT  163 (197)
Q Consensus       118 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~-iii~th~~~  163 (197)
                      +.+|++|++|||++ ++...++.+++++..+.+++++ +|+++|...
T Consensus        81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p  126 (149)
T 2kjq_A           81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP  126 (149)
T ss_dssp             GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred             HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence            56899999999998 6666688999999998877777 888888654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.52  E-value=2.1e-17  Score=141.46  Aligned_cols=120  Identities=19%  Similarity=0.115  Sum_probs=82.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEe---------cCCCC--CCC----CCH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVA---------QQDFL--IEE----LTV   58 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~---------q~~~~--~~~----ltv   58 (197)
                      +|||||||||||++|+|++. +++|+|.+.+.++...       ...+.+++.|         |++.+  +.+    .|+
T Consensus       173 ~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~  251 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETA  251 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHH
T ss_pred             ECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHH
Confidence            59999999999999999988 6899999998887421       1223345554         88765  343    588


Q ss_pred             HHHHHHHHHccCC-ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy4235          59 LEHLQFMAKLTMD-RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFC  126 (197)
Q Consensus        59 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llll  126 (197)
                      .+++.++..-+.. ...........+ +.+..+++....  .+..|||||+||  |||+|+.+|++..-
T Consensus       252 ~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          252 QIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            9998876421110 000000011222 346678887653  678999999999  99999999998763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.50  E-value=7.4e-17  Score=134.62  Aligned_cols=144  Identities=14%  Similarity=0.118  Sum_probs=93.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCC------------HHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELT------------VLEH   61 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~lt------------v~e~   61 (197)
                      +||||||||||+++|+|++. |++|+|.+.|.++...       ..++.++|++|++.+|+..+            +.|.
T Consensus        61 ~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~  139 (337)
T 2qm8_A           61 TGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRET  139 (337)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHH
Confidence            59999999999999999988 6899999999887431       23456899999988775321            2333


Q ss_pred             HHHHHHc---------------------cC------CccccHHHHH---HHHHHHHHHcCCcccccc-cCCCCCHHHHHH
Q psy4235          62 LQFMAKL---------------------TM------DRRTTWLELN---KTITRVMENLGINHRRQV-QISGLSGGQRKR  110 (197)
Q Consensus        62 l~~~~~~---------------------~~------~~~~~~~~~~---~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qr  110 (197)
                      +......                     ..      .........+   ..+.+....+.+ ++.|. ....+|+|++|+
T Consensus       140 ~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~  218 (337)
T 2qm8_A          140 MLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV-NKADDGDGERRASAAASE  218 (337)
T ss_dssp             HHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE-EchhccCchhHHHHHHHH
Confidence            2111000                     00      0000000000   011112112222 33442 335689999999


Q ss_pred             HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235         111 LALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus       111 v~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +..+++++.      .|++++    +|++|.....++++.|.++..
T Consensus       219 l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          219 YRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            999999987      688876    999999999999999988654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.49  E-value=4.6e-16  Score=127.27  Aligned_cols=119  Identities=16%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc---cCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL---TMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~---~~~~~~~~~   77 (197)
                      .|++|||||||.+.|++++. +. |      .     . .+.+.+|+|++.+++. +.++|+.+....   .........
T Consensus        37 ~G~sGsGKSTla~~L~~~l~-~~-g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a  101 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYNHLM-EK-Y------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGT  101 (290)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HH-H------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred             ECCCCCCHHHHHHHHHHHhh-hc-C------C-----C-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcch
Confidence            49999999999999999876 32 2      0     1 2345666999988875 888998875210   000000001


Q ss_pred             HHHHHHHHHHHHcCCc--------ccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q psy4235          78 ELNKTITRVMENLGIN--------HRRQVQISGLSGGQRKRLALA--VQLLTEPQILFCDEPTTGLDSY  136 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~--------~~~~~~~~~LSgGq~qrv~ia--~al~~~p~llllDEPts~LD~~  136 (197)
                      .....+.+.++.+.-.        .....+...+||||+||+.+|  +++  +|+|||+|||++++|+.
T Consensus       102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred             hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence            1123455666665332        123445678999999999997  555  99999999999999985

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.49  E-value=1.1e-15  Score=125.65  Aligned_cols=97  Identities=25%  Similarity=0.274  Sum_probs=65.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCccc-c--cceEEEEecCCC----------------CCCCCCH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRTV-M--SRISGYVAQQDF----------------LIEELTV   58 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~~-~--~~~~~~v~q~~~----------------~~~~ltv   58 (197)
                      +||||||||||+|+|+|+.. |++|+|.+   +|.+++... .  .+.+||++|.|.                +||.+|+
T Consensus       175 ~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~  253 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD  253 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS
T ss_pred             ECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc
Confidence            59999999999999999998 79999999   898875421 1  134799999975                5888999


Q ss_pred             HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCH
Q psy4235          59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSG  105 (197)
Q Consensus        59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg  105 (197)
                       +|+.|....+..      +...++.++++.++|. +..++++..||.
T Consensus       254 -~n~~~~~~~~~~------e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          254 -KQCFFSDCNHVD------EPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             -CCCSSTTCCSSS------CSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             -ccCcCCCCcCCC------CCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence             998875321111      1235688999999995 778888888885

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.45  E-value=7.6e-15  Score=125.51  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy4235          97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ-LACESRIVICAIHQ  161 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~~~iii~th~  161 (197)
                      +.++.+||+|++|++.+|++|+..|.++++    +.+|+... ...+.+++ +...+.+++++|..
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~  307 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSAL  307 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECC
Confidence            567788999999999999999999999999    99999877 44444444 44456666666543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.40  E-value=1.1e-16  Score=140.13  Aligned_cols=156  Identities=16%  Similarity=0.127  Sum_probs=93.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-CCcccccceEEEEecCCC----------------------CCCCCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-ISRTVMSRISGYVAQQDF----------------------LIEELT   57 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-~~~~~~~~~~~~v~q~~~----------------------~~~~lt   57 (197)
                      +||||||||||+++|+|+++ |++|.|.++|.+ +.. .....++++.|...                      ++..++
T Consensus       266 ~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir  343 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVR  343 (511)
T ss_dssp             EESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCC
T ss_pred             ECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcC
Confidence            59999999999999999998 799999998865 221 11223444444322                      223455


Q ss_pred             HHHHHHHHHHccCC-ccccHHHHHHHHHHHHHHcC-----Ccc----ccc---ccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy4235          58 VLEHLQFMAKLTMD-RRTTWLELNKTITRVMENLG-----INH----RRQ---VQISGLSGGQRKRLALAVQLLTEPQIL  124 (197)
Q Consensus        58 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----l~~----~~~---~~~~~LSgGq~qrv~ia~al~~~p~ll  124 (197)
                      ..|++.+....... ..... .....+.++++++.     +..    ..+   .....+|+||+||.+++.         
T Consensus       344 ~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai---------  413 (511)
T 2oap_1          344 GREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV---------  413 (511)
T ss_dssp             STHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE---------
T ss_pred             HHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE---------
Confidence            55544433221100 00000 00011223333332     221    112   234568999999887652         


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcchHHhhcCe
Q psy4235         125 FCDEPTTGLDSYSANNVVNLLKQLACESRIVIC--AIHQPTSGVFEKFDT  172 (197)
Q Consensus       125 llDEPts~LD~~~~~~i~~~l~~l~~~~~~iii--~th~~~~~~~~~~d~  172 (197)
                       + | ++|||+.....+++.+.++..++.++++  +||+.. ++...|+.
T Consensus       414 -~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g~  459 (511)
T 2oap_1          414 -N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLGV  459 (511)
T ss_dssp             -E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHTS
T ss_pred             -E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcCC
Confidence             2 7 9999998888888888777666888875  888864 67777653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.39  E-value=5.6e-16  Score=120.51  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+++|+|++.+  +..|.|.++|..+..                    +..+++................
T Consensus        28 ~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~   87 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKGAPETFDFEG   87 (208)
T ss_dssp             ECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTTSGGGBCHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCCCCchhhHHH
Confidence            599999999999999999872  134555555443321                    1111110000000000011111


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA-VQLLTEPQILFCDEPT  130 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia-~al~~~p~llllDEPt  130 (197)
                      ..+.+..+-..-.+..........+|+||+||++++ ++++.++.++++|||.
T Consensus        88 ~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           88 FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            111111211111121112223345799999999998 8888888888899984

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.38  E-value=3.1e-14  Score=106.48  Aligned_cols=59  Identities=27%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+|+|+|++ | ++|+|.++|.++......+  .|++|+..+| .+||.||+.+
T Consensus        39 ~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHHHHH
Confidence            5999999999999999988 4 8999999998874321111  3899998888 8999999865

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.38  E-value=1.9e-12  Score=110.19  Aligned_cols=60  Identities=10%  Similarity=-0.000  Sum_probs=45.8

Q ss_pred             hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------chHH
Q psy4235         119 TEPQILFCDEPTTGLDSYSA------------NNVVNLLKQLACE-SRIVICAIHQPT------------------SGVF  167 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~------------~~i~~~l~~l~~~-~~~iii~th~~~------------------~~~~  167 (197)
                      .+|+++++|||++.+|+...            .++++.|++++++ +.+||+++|...                  ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999997533            5678888888765 899999999711                  2357


Q ss_pred             hhcCeEEEEeC
Q psy4235         168 EKFDTVSLLAH  178 (197)
Q Consensus       168 ~~~d~v~~l~~  178 (197)
                      +.+|.+++|.+
T Consensus       352 ~~ad~vl~L~~  362 (400)
T 3lda_A          352 YSSTTRLGFKK  362 (400)
T ss_dssp             HHCSEEEEEEE
T ss_pred             HhcceEEEEEe
Confidence            78999999986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.37  E-value=4.1e-17  Score=138.49  Aligned_cols=157  Identities=11%  Similarity=0.096  Sum_probs=106.3

Q ss_pred             CCCCCCcHHHHHHHHhc------------CcCCCceeEEEECCeeCCc----ccccceE---EEEecCCCCCCCCCHHHH
Q psy4235           1 MSPSGAGKTTLLAALNK------------RVKGLVQGEILLNGCPISR----TVMSRIS---GYVAQQDFLIEELTVLEH   61 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g------------~~~~~~~G~i~~~g~~~~~----~~~~~~~---~~v~q~~~~~~~ltv~e~   61 (197)
                      +|+||||||||+|+|+|            ... |+.|.|.+.|..+..    ...++.+   .++.+.+.++..++..|+
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~  104 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVLGNPANYPYATID-PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG  104 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCcccccCCCceeec-ceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence            69999999999999999            334 689999998854321    0111222   477788888887776655


Q ss_pred             H--HHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHH
Q psy4235          62 L--QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYS  137 (197)
Q Consensus        62 l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~  137 (197)
                      +  .|....+.            ++.++..++..  .+..+..+|++.            +|  +++++|||+.++|+..
T Consensus       105 L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~  158 (392)
T 1ni3_A          105 LGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEF  158 (392)
T ss_dssp             SCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhHHHHHHH
Confidence            4  33322211            11111111211  133444566653            89  9999999999999999


Q ss_pred             HHHHHHHHHHH-HhCCCEEEEEecCCcchHHhhcCeEE-EEeCCc-EEEEecCh
Q psy4235         138 ANNVVNLLKQL-ACESRIVICAIHQPTSGVFEKFDTVS-LLAHGG-LLAYHGQV  188 (197)
Q Consensus       138 ~~~i~~~l~~l-~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg-~i~~~g~~  188 (197)
                      .++.++.++.. ...|.+++  +|.. ..+..+||++. +|.+ | ++++.++.
T Consensus       159 ~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~-G~~~~~~~~~  208 (392)
T 1ni3_A          159 VEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTE-TKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHT-TCSCGGGSCC
T ss_pred             HHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhcc-CCceeecCCC
Confidence            99999999998 66666643  8886 47899999998 8877 7 66555544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.36  E-value=7.2e-15  Score=122.20  Aligned_cols=131  Identities=18%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc----CCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRV----KGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~----~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||+|||||+++|+|.+    . +++|.+..++.++...   .....+.|++|.+.+.+  ++.|++...........
T Consensus        57 ~Gp~G~GKTTLa~~ia~~l~~~~~-~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i  133 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASELQTNIH-VTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDI  133 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHHHTCCEE-EEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC
T ss_pred             ECCCCCcHHHHHHHHHHHhCCCEE-EEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccce
Confidence            4999999999999999987    4 4677776665554211   11346899999877765  78888754433221100


Q ss_pred             -ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235          74 -TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE  151 (197)
Q Consensus        74 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~  151 (197)
                       .......+.+...+..+++.. +.+++..||+|++||+.++                .+||+.+..++.++|++.++.
T Consensus       134 ~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~  195 (334)
T 1in4_A          134 MIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL  195 (334)
T ss_dssp             ---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred             eeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence             000111234455566666655 6778899999999998655                788888899999999887643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.35  E-value=1.5e-14  Score=119.03  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc-cccce-EEEEecCCCCCC----CCCHHHHHH--HHHH--
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT-VMSRI-SGYVAQQDFLIE----ELTVLEHLQ--FMAK--   67 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~ltv~e~l~--~~~~--   67 (197)
                      +||||||||||+|+|+|... +.+|+|.+   +|+.++.. .+.+. ++|++|.|.+.+    .+|+ |++.  |...  
T Consensus       179 vG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~  256 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIRE  256 (307)
T ss_dssp             EESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHH
T ss_pred             ECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHH
Confidence            59999999999999999988 79999999   88776542 22222 699999987765    6889 8883  3210  


Q ss_pred             c----cCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHH
Q psy4235          68 L----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR  110 (197)
Q Consensus        68 ~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr  110 (197)
                      .    .........+....+.++++.++|.+........++.|++||
T Consensus       257 ~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          257 KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            1    000000011123568899999999875555566677788773

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.31  E-value=3.8e-17  Score=126.47  Aligned_cols=57  Identities=9%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         113 LAV-QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       113 ia~-al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .++ +++.+|++++||||++++|..+.+.|.+.|.....+    +...|.     ...+|.++++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~-----~~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE-----PGLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS-----TTTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc-----cCCceEEEECCC
Confidence            455 677888888899999999999999999988887643    122341     156899877653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.30  E-value=2.1e-16  Score=128.28  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|... +  |.|.++|.++...   ...+.++++||.. ...|.+++.|++.+.....   .   
T Consensus        50 ~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r---~---  120 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVANESG-L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR---S---  120 (274)
T ss_dssp             ESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred             ECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc---C---
Confidence            49999999999999999876 3  7899999887432   1234578888874 4566667777665422110   0   


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC------------CCCHHHHHHHHHH
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT------------GLDSYSANNVVNL  144 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts------------~LD~~~~~~i~~~  144 (197)
                        . ....      .+....++.+.+|||||+||+.|++|+.++|++|  |||+.            -.|...+.+|++.
T Consensus       121 --~-~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~  189 (274)
T 2x8a_A          121 --D-RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT  189 (274)
T ss_dssp             ---------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred             --C-Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence              0 0000      1234456677889999999999999999999985  99864            3356666666654


Q ss_pred             H
Q psy4235         145 L  145 (197)
Q Consensus       145 l  145 (197)
                      +
T Consensus       190 ~  190 (274)
T 2x8a_A          190 I  190 (274)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.24  E-value=4.5e-12  Score=104.29  Aligned_cols=99  Identities=21%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|||||||||+++.|++.+. +..|+|.+.+.+..+.      +             ..+                    
T Consensus       110 vG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~------~-------------a~e--------------------  149 (306)
T 1vma_A          110 VGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRA------A-------------AIE--------------------  149 (306)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCH------H-------------HHH--------------------
T ss_pred             EcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccH------H-------------HHH--------------------
Confidence            59999999999999999987 5777888776654210      0             011                    


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRL---ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv---~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                       .+..+.+.+++..     +...|+|+.+++   ++++++..+|+++|+|||..   ......+++.++.+
T Consensus       150 -qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l  211 (306)
T 1vma_A          150 -QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV  211 (306)
T ss_dssp             -HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence             1223445556643     235689999999   89999999999999999974   33444555545444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.23  E-value=4.1e-13  Score=102.59  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235         110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus       110 rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      .+.+|++++.+|+++++|  ||++|..+..++++.|.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            467899999999999999  999999999999998865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.13  E-value=3.6e-11  Score=98.43  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|||||||||+++.|++.+. +++|               +.+.++.++..   ..++.+++.....             
T Consensus       111 vG~~GsGKTTl~~~LA~~l~-~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~-------------  158 (296)
T 2px0_A          111 FGSTGAGKTTTLAKLAAISM-LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE-------------  158 (296)
T ss_dssp             EESTTSSHHHHHHHHHHHHH-HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT-------------
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH-------------
Confidence            59999999999999999886 4556               23566666542   2355565554321             


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC--ESRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~~~iii~  158 (197)
                              ..++.....     .+. ..-+.++++  +.+|+++|+|  |+|+|+.....+.++.+-+..  ...+++++
T Consensus       159 --------~~gl~~~~~-----~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl  220 (296)
T 2px0_A          159 --------LLQAPLEVC-----YTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVL  220 (296)
T ss_dssp             --------TTTCCCCBC-----SSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEE
T ss_pred             --------hcCCCeEec-----CCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEE
Confidence                    122221111     122 233455554  4999999999  889998776655555444331  22234444


Q ss_pred             --ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235         159 --IHQPTSGVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       159 --th~~~~~~~~~~d~v~~l~~gg~i~  183 (197)
                        +|.. ..+.+.++++..+..+|.+.
T Consensus       221 ~at~~~-~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          221 SATAKY-EDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             ETTBCH-HHHHHHTTTTSSSCCCEEEE
T ss_pred             ECCCCH-HHHHHHHHHHhcCCCCEEEE
Confidence              6764 46777788765555544443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.12  E-value=1.8e-12  Score=106.69  Aligned_cols=109  Identities=12%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEE---CCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILL---NGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~---~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+++|+|++.. |++|+|.+   +|...... .++.++++ |...+++.+|+.+++.+.........   
T Consensus        86 ~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---  160 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---  160 (308)
T ss_dssp             EECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---
T ss_pred             ECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---
Confidence            599999999999999998751 48999999   88765332 23446888 87788888999999988654432110   


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy4235          77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD  134 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD  134 (197)
                                        ....+....+.+  +|+..+.+.+.+|+++|+|.|....+
T Consensus       161 ------------------~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          161 ------------------NVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             ------------------CEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             ------------------ceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence                              001111111111  22222223446789999999988776

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.11  E-value=2.3e-10  Score=93.59  Aligned_cols=114  Identities=20%  Similarity=0.205  Sum_probs=75.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +|+||+||||+++.|++.+. +..|+|.+.+.++.....                  + +.+.                 
T Consensus       104 ~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~~------------------~-~ql~-----------------  146 (295)
T 1ls1_A          104 VGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAA------------------R-EQLR-----------------  146 (295)
T ss_dssp             ECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHHH------------------H-HHHH-----------------
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHhH------------------H-HHHH-----------------
Confidence            49999999999999999987 577888887766532100                  0 0000                 


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP-TTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP-ts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                          .+.+..++.-.....  ..+-.+.+|.+|+.+...+++++|+||| ++++|.....++.++.+.+.. ..+++++
T Consensus       147 ----~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~-~~~~lv~  218 (295)
T 1ls1_A          147 ----LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP-DEVLLVL  218 (295)
T ss_dssp             ----HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEE
T ss_pred             ----HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCC-CEEEEEE
Confidence                012223443221100  1233345788999998899999999999 999999888888888776643 3344444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.11  E-value=6.7e-12  Score=98.79  Aligned_cols=60  Identities=17%  Similarity=0.092  Sum_probs=44.0

Q ss_pred             hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCcch-------HHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTTGL--DSYSANNVVNLLKQLA-CESRIVICAIHQPTSG-------VFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts~L--D~~~~~~i~~~l~~l~-~~~~~iii~th~~~~~-------~~~~~d~v~~l~~  178 (197)
                      .+|+++++|+|++.+  |+....+++..+.++. +.+.++++++|.....       +.+.||.++.|..
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999887  6655556555555554 5688999999976421       4678999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.10  E-value=1.7e-10  Score=96.55  Aligned_cols=74  Identities=14%  Similarity=0.031  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcc-----
Q psy4235         109 KRLALAVQLLTE--PQILFCDEPTTGL----------DS---YSANNVVNLLKQL----ACESRIVICAIHQPTS-----  164 (197)
Q Consensus       109 qrv~ia~al~~~--p~llllDEPts~L----------D~---~~~~~i~~~l~~l----~~~~~~iii~th~~~~-----  164 (197)
                      +-+.++++++.+  |+++++|||++.+          |+   ...+.+.+.++++    ++.+.++|+++|....     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345677888755  9999999999988          32   1222445555554    3458899999886421     


Q ss_pred             ----------hHHhhcCeEEEEeCCcEEE
Q psy4235         165 ----------GVFEKFDTVSLLAHGGLLA  183 (197)
Q Consensus       165 ----------~~~~~~d~v~~l~~gg~i~  183 (197)
                                .+..+||.++.+.. +.+.
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~  233 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRR-IETL  233 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEE-EEEE
T ss_pred             CCCcccCCchHhhhccceEEEEEE-eeee
Confidence                      15678998888876 4443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.10  E-value=2.3e-12  Score=112.56  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             CCCCCCcHHHHHHHHhc-CcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      .|++||||||++++|.. ++...+.|++.+.+.|.....+..   | ..-+.+..  +|.++.......-   .....++
T Consensus       173 aG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~-~~lPhl~~--~Vvtd~~~a~~~L---~~~~~Em  243 (512)
T 2ius_A          173 AGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---Y-EGIPHLLT--EVVTDMKDAANAL---RWCVNEM  243 (512)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---G-TTCTTBSS--SCBCSHHHHHHHH---HHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---h-ccCCcccc--eeecCHHHHHHHH---HHHHHHH
Confidence            49999999999999875 322134577776666643211110   0 00011110  1212221111100   0112234


Q ss_pred             HHHHHHHHHHcCCcccccc---cCCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHH
Q psy4235          80 NKTITRVMENLGINHRRQV---QISGLSGGQRKRL----------ALAVQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLL  145 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~---~~~~LSgGq~qrv----------~ia~al~~~p~-llllDEPts~LD~~~~~~i~~~l  145 (197)
                      +++. +++...|+.+....   ....+|+||+|+.          .+++++...|. ++++||+++-++.. ...+.+.+
T Consensus       244 erR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l  321 (512)
T 2ius_A          244 ERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELI  321 (512)
T ss_dssp             HHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHH
T ss_pred             HHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHH
Confidence            4443 67888888654332   2346788887752          35566677888 89999999888733 34455555


Q ss_pred             HHHH----hCCCEEEEEecCCc
Q psy4235         146 KQLA----CESRIVICAIHQPT  163 (197)
Q Consensus       146 ~~l~----~~~~~iii~th~~~  163 (197)
                      ..+.    +-|.++|++||.+.
T Consensus       322 ~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          322 ARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHHHHCGGGTEEEEEEESCCC
T ss_pred             HHHHHHhhhCCcEEEEEecCCc
Confidence            5543    23778999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.07  E-value=1.5e-10  Score=99.89  Aligned_cols=159  Identities=16%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccce-EEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRI-SGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~-~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      .|++|+|||||+..+++... +..| .|.+.+...+...+.++ .+....       ... +.+.    ..   ... ..
T Consensus       209 ~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~~l~----~g---~l~-~~  271 (454)
T 2r6a_A          209 AARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-QNLR----TG---KLT-PE  271 (454)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-HHHH----TS---CCC-HH
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-HHHh----cC---CCC-HH
Confidence            49999999999999987654 2334 34443333222111111 000000       000 0010    00   011 12


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHH
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDS--------YSANNVVNLLKQL  148 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~--------~~~~~i~~~l~~l  148 (197)
                      ...++.+.++.++..+..-.....+|.++.+  +.++.++  .+|+++++|+++.-.++        .....+.+.|+.+
T Consensus       272 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l  349 (454)
T 2r6a_A          272 DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL  349 (454)
T ss_dssp             HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence            2234455555554433333345689999886  5666666  68999999999987642        3346677778888


Q ss_pred             HhC-CCEEEEEec---------C--Cc-------chHHhhcCeEEEEeC
Q psy4235         149 ACE-SRIVICAIH---------Q--PT-------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       149 ~~~-~~~iii~th---------~--~~-------~~~~~~~d~v~~l~~  178 (197)
                      +++ +.+||+++|         +  +.       ..+.+.||.|++|..
T Consensus       350 Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r  398 (454)
T 2r6a_A          350 ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR  398 (454)
T ss_dssp             HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred             HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence            755 889999988         2  21       036788999999976

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.99  E-value=1.1e-11  Score=94.85  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=32.2

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235         111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus       111 v~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      ...|++++.+|+++++|  ||++|.....++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999  99999999999998887643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.97  E-value=1.7e-11  Score=109.44  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=82.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce-eEEEECCeeCCcccccceEEEEecCCC----------------------CCCCCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDF----------------------LIEELT   57 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~-G~i~~~g~~~~~~~~~~~~~~v~q~~~----------------------~~~~lt   57 (197)
                      +||||+|||||+++|++.+. +.. |.+.+++.+....  ...++|+|+...                      .+..++
T Consensus        66 ~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~  142 (604)
T 3k1j_A           66 IGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTV  142 (604)
T ss_dssp             ECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------
T ss_pred             EeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccc
Confidence            59999999999999999987 454 8899888776432  344788877431                      111111


Q ss_pred             HHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy4235          58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS  137 (197)
Q Consensus        58 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~  137 (197)
                      +.+|+..............    ......-+.+|.-+......+.+|+|++|++..++....++.+|++||... |++..
T Consensus       143 ~~~nl~v~~~~~~~~~~v~----~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~  217 (604)
T 3k1j_A          143 LVPKLLVDNCGRTKAPFID----ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKM  217 (604)
T ss_dssp             CCCEEEECCTTCSSCCEEE----CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHH
T ss_pred             cccceeeccccCCCCCEEE----cCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHH
Confidence            1111110000000000000    000011122232222223346799999999999999999999999999988 89999


Q ss_pred             HHHHHHHHHHH
Q psy4235         138 ANNVVNLLKQL  148 (197)
Q Consensus       138 ~~~i~~~l~~l  148 (197)
                      +..+++.|.+-
T Consensus       218 q~~Ll~~Le~~  228 (604)
T 3k1j_A          218 QQSLLTAMQEK  228 (604)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHcC
Confidence            99999998753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.96  E-value=7.1e-11  Score=93.18  Aligned_cols=48  Identities=17%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----------cccceEEEEecC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----------VMSRISGYVAQQ   49 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~q~   49 (197)
                      +|||||||||||++|+|++. |++|+|.++|.++...           ..+..++|++|+
T Consensus        33 ~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHHHS-CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            59999999999999999998 7999999999887211           124568999974

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.95  E-value=2.8e-13  Score=109.53  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCc-ccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDR-RTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~-~~~   75 (197)
                      +||||||||||+++|++...   .|.|.+++.++...   ...+.+++++|... ..+.+++.|++.......... ...
T Consensus        79 ~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~  155 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  155 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred             ECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence            59999999999999998764   68899988765321   12234678888753 566778888885433211000 000


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP  129 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP  129 (197)
                      .......+.++             +.+|||||+||+.+++|+.++|++  +|++
T Consensus       156 ~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~~  194 (278)
T 1iy2_A          156 NDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDPA  194 (278)
T ss_dssp             CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred             chHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence            11112223333             245899999999999999999987  6765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.93  E-value=3e-13  Score=107.76  Aligned_cols=112  Identities=14%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCC-cccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMD-RRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~-~~~~   75 (197)
                      +||||+|||||+++|++...   .|.+.+++.++...   ...+.+++++|.. ...+.+++.|++......... ....
T Consensus        55 ~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~  131 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  131 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred             ECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence            49999999999999998754   68899988765221   1223467788874 356677788888443221100 0000


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPT  130 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPt  130 (197)
                      .....+.+.+++             ..|||||+||+.+++|+.++|++  +|++.
T Consensus       132 ~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l  171 (254)
T 1ixz_A          132 NDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL  171 (254)
T ss_dssp             CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred             chHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence            111122233333             35789999999999999999987  67765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.91  E-value=2.8e-09  Score=89.56  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC----------CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHH-Hcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG----------LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMA-KLT   69 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~----------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~   69 (197)
                      +|++|||||||+|.|+|....          ++.|.|.++|.++.   +....|++.+.+.    ..+. .+.-.. ...
T Consensus       185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve-~f~~tl~~~~  256 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVD-AFFVTLSEAK  256 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHH-HHHHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHH-HHHHHHHHHH
Confidence            599999999999999987531          35688998886541   1222455544221    1121 111000 000


Q ss_pred             -------CCc--ccc--HHHHHHHHHHHHHHcCCcccc----cccCCCCCHHHHHHHHHH----HHH-hhCCCEEEEeCC
Q psy4235          70 -------MDR--RTT--WLELNKTITRVMENLGINHRR----QVQISGLSGGQRKRLALA----VQL-LTEPQILFCDEP  129 (197)
Q Consensus        70 -------~~~--~~~--~~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGq~qrv~ia----~al-~~~p~llllDEP  129 (197)
                             ...  ...  .......+.++++.+++.+..    ..++..+|++++|++.++    +++ ..+|++    +|
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~  332 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP  332 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence                   000  011  112223456777777764432    345667888888888877    555 334454    89


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q psy4235         130 TTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus       130 ts~LD~~~~~~i~~~l~~l~~  150 (197)
                      +|++|......+++.|.+...
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHHHhc
Confidence            999999999999999987654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.81  E-value=1.1e-10  Score=89.55  Aligned_cols=58  Identities=26%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecCCCCCCCCCHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQDFLIEELTVLEHLQ   63 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~~~~~ltv~e~l~   63 (197)
                      +||||||||||+++|+|+.+     .+.+.+..+....   ....++|+||++..++.+++.+++.
T Consensus        13 ~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL   73 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred             ECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence            59999999999999999853     3667776654322   2345789999988777777666544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.74  E-value=1.2e-09  Score=91.52  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=35.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE-EECCeeCCcccccceEEEEecCCCCCCCCCHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQDFLIEELTVLE   60 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e   60 (197)
                      .||||||||||+..++.... +..|.+ +++++......+.+++++.+|+..+....++.+
T Consensus        67 ~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~  126 (356)
T 3hr8_A           67 FGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ  126 (356)
T ss_dssp             EESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH-hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence            49999999999999998765 345554 555544322223344555555443333334433

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.73  E-value=9.8e-10  Score=95.34  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             CCCCCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         100 ISGLSGGQRKRLALAVQ--LLT---------------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       100 ~~~LSgGq~qrv~ia~a--l~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      .+.+||||+|-.-+|++  +++               .-.+++|||. +.+|....+..+++++++   |--+|+++-. 
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-  451 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-  451 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence            46799999996555543  222               2357999999 999999999999999977   6666777754 


Q ss_pred             cchHHhhcCeEEEEe
Q psy4235         163 TSGVFEKFDTVSLLA  177 (197)
Q Consensus       163 ~~~~~~~~d~v~~l~  177 (197)
                        .+..++|.++.+-
T Consensus       452 --~i~p~v~~~~~~~  464 (483)
T 3euj_A          452 --NISPERGTTYKLV  464 (483)
T ss_dssp             --SCCCSSSEEEECC
T ss_pred             --hhhhccCceEEEE
Confidence              3578889887774

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.72  E-value=1.8e-08  Score=84.17  Aligned_cols=65  Identities=12%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q psy4235          97 QVQISGLSGGQRKRLALAVQLLTEPQILFCD-EPTTGLDSYSANNVVNLLKQLACESRIVICAI--HQPT  163 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllD-EPts~LD~~~~~~i~~~l~~l~~~~~~iii~t--h~~~  163 (197)
                      +.++..+|++++|++. +.+...++-++++| +|.+++|......+++.+..... +..+|++.  ||..
T Consensus       226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred             ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence            3456778999998876 55556778889999 99999999998888887777543 66777777  7754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.65  E-value=6.6e-08  Score=83.87  Aligned_cols=58  Identities=29%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q psy4235         105 GGQRKRLALAVQLLTEPQILFCDEPT----------TGLDSYSANNVVNLLKQLA----CESRIVICAIHQP  162 (197)
Q Consensus       105 gGq~qrv~ia~al~~~p~llllDEPt----------s~LD~~~~~~i~~~l~~l~----~~~~~iii~th~~  162 (197)
                      +++++|..+++|....|.+|++||+.          ++.|....+.+.+++..+.    ..+..+|.+||.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~  164 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP  164 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence            56778888999999999999999993          4677766666677776653    2356778888875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.62  E-value=7.9e-10  Score=84.94  Aligned_cols=59  Identities=19%  Similarity=0.125  Sum_probs=42.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc--ccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV--MSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~--~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+++|++.+     |.+.++|.++....  .....++++|+...++.+++.+++..
T Consensus        35 ~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   95 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD   95 (200)
T ss_dssp             ECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence            5999999999999999864     77899887764321  12235888887666666666666654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.58  E-value=7.3e-08  Score=88.22  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=58.7

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcchHHhhcCe
Q psy4235          97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICA-IHQPTSGVFEKFDT  172 (197)
Q Consensus        97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~-th~~~~~~~~~~d~  172 (197)
                      +..+.-+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+.......++++++ ||+. +.+..+++.
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~  261 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND  261 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence            34566789999999999999999999999999996 999887777776666655445677775 7765 466677764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.56  E-value=4.3e-09  Score=80.86  Aligned_cols=71  Identities=10%  Similarity=0.073  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcch-HHhhcCeEEEEeC
Q psy4235         104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG-VFEKFDTVSLLAH  178 (197)
Q Consensus       104 SgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~-~~~~~d~v~~l~~  178 (197)
                      +.|+.+|..++..+..+|+.+..+  .+.++|.....+.+.+...  .+..+|+.+|...+. +...||.++++..
T Consensus        61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            678888888888887777543322  3345666666666555433  255777778765421 2577899988854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.47  E-value=5e-07  Score=75.20  Aligned_cols=43  Identities=9%  Similarity=-0.043  Sum_probs=34.2

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCC
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLAC---ESRIVICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~~~iii~th~~  162 (197)
                      .+|.+|++||+... |......+.+++.++..   .+.++|+++|++
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            45889999999876 88888888888876654   467888888876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.44  E-value=2.5e-09  Score=94.40  Aligned_cols=33  Identities=39%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee-EEE-ECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG-EIL-LNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~-~~g~~~   34 (197)
                      +|+||||||||+++|++.+. +++| +|. ++|.++
T Consensus       375 iG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          375 TGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIV  409 (552)
T ss_dssp             EESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHH
T ss_pred             ECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHH
Confidence            59999999999999999987 5776 774 888664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.38  E-value=1.6e-08  Score=80.64  Aligned_cols=49  Identities=31%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             CCCCCCcHHHHHHHHh---cCcCCCceeEEE--------ECCeeCCcc----cccceEEEEecCC
Q psy4235           1 MSPSGAGKTTLLAALN---KRVKGLVQGEIL--------LNGCPISRT----VMSRISGYVAQQD   50 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~---g~~~~~~~G~i~--------~~g~~~~~~----~~~~~~~~v~q~~   50 (197)
                      +|||||||||++++|+   |+.. +++|.|+        .+|.++...    .+++.+++++|..
T Consensus        33 ~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           33 DGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            5999999999999999   9887 7999998        899887421    2445678888753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.37  E-value=2e-07  Score=80.08  Aligned_cols=45  Identities=9%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         119 TEPQILFCDEPTTGLDS-YSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       119 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      .+|++|++||+..-.+. ..+..++..+..+...+..+|++||.+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~  238 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP  238 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence            48999999999876654 6788899999988877889999999754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.34  E-value=5e-10  Score=94.50  Aligned_cols=120  Identities=14%  Similarity=0.133  Sum_probs=64.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+++|+|.    .+|++..-..+  ...+...++++||... ++.+.+....+.  .....   ......
T Consensus       175 ~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~~~~--r~l~~---~~~~~~  243 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLEL----CGGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTGGES--RDLPS---GQGINN  243 (377)
T ss_dssp             ECSTTSSHHHHHHHHHHH----HCCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCSTTTT--TTCCC---CSHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh----cCCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHHHHH--hhccc---cCcchH
Confidence            499999999999999974    45776651111  1111123566676643 233332211100  00000   000000


Q ss_pred             HHHHHHHHHH---cCCc-------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEE-EeCCCC
Q psy4235          80 NKTITRVMEN---LGIN-------------HRRQVQISGLSGGQRKRLALAVQLLTEPQILF-CDEPTT  131 (197)
Q Consensus        80 ~~~~~~~l~~---~~l~-------------~~~~~~~~~LSgGq~qrv~ia~al~~~p~lll-lDEPts  131 (197)
                      ...+...++.   +.+.             ...+.....+++|++||+..+++++..|++++ ||+|+.
T Consensus       244 ~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~  312 (377)
T 1svm_A          244 LDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF  312 (377)
T ss_dssp             HHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred             HHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence            1122233320   0011             23455667899999999998877888888887 888875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.33  E-value=8.9e-10  Score=96.13  Aligned_cols=113  Identities=13%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecCCC-CCCCCCHHHHHHHHHHccCC-cccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMD-RRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~-~~~~   75 (197)
                      +||||+|||||+++|++...   .+.+.+++.++....   ..+.+.++||... ..|.+.+.|++......... ....
T Consensus        70 ~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~  146 (499)
T 2dhr_A           70 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG  146 (499)
T ss_dssp             ECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTS
T ss_pred             ECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCC
Confidence            49999999999999998754   578899887764321   1233566777643 44555566665332111100 0001


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT  131 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts  131 (197)
                      .......+.+++.             .||||++|+..+++|..++|++  |||+..
T Consensus       147 ~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          147 NDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             SHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             cHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence            1122233444443             3678888888888888888887  788864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.27  E-value=1.4e-06  Score=72.37  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEe
Q psy4235         101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAI  159 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~iii~t  159 (197)
                      +.||.++++|+..|...+.+++++|.|+|...     ..++...++.++.+  +..+||+-
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            47999999999999999999999999998654     33566666666543  45555553

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.25  E-value=1.7e-07  Score=70.33  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG   25 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G   25 (197)
                      +||||||||||+++|.+++. +..|
T Consensus        32 ~G~NGsGKStll~ai~~~l~-~~~~   55 (182)
T 3kta_A           32 VGANGSGKSNIGDAILFVLG-GLSA   55 (182)
T ss_dssp             EECTTSSHHHHHHHHHHHTT-CCCT
T ss_pred             ECCCCCCHHHHHHHHHHHHc-CCcc
Confidence            59999999999999998776 3444

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.19  E-value=4.3e-06  Score=71.59  Aligned_cols=32  Identities=25%  Similarity=0.147  Sum_probs=24.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~   33 (197)
                      +|||||||||++..|+..+. +..++|.+-+.+
T Consensus       103 vG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D  134 (433)
T 3kl4_A          103 VGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAAD  134 (433)
T ss_dssp             CCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecC
Confidence            59999999999999998876 455566554443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.19  E-value=2.8e-07  Score=70.28  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG   25 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G   25 (197)
                      +||||||||||+++|++.+. |+.|
T Consensus        12 ~G~~GsGKSTl~~~L~~~~~-~~~~   35 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFEDPS-TSYK   35 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHCTT-CCEE
T ss_pred             ECCCCCCHHHHHHHHHHhhC-CCeE
Confidence            59999999999999999886 4555

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.16  E-value=1.4e-05  Score=64.29  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCCEEEEEecCC---cchHH
Q psy4235         105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDS----------YSANNVVNLLKQLAC----ESRIVICAIHQP---TSGVF  167 (197)
Q Consensus       105 gGq~qrv~ia~al~~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~----~~~~iii~th~~---~~~~~  167 (197)
                      ++++.+..+..+...+|.+|++||+.+-++.          .....++..+.....    .+..+|.+|+.+   ...+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~  177 (297)
T 3b9p_A           98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL  177 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence            4566677777777889999999999776543          222334444444322    123456666653   22344


Q ss_pred             hhcCeEEEE
Q psy4235         168 EKFDTVSLL  176 (197)
Q Consensus       168 ~~~d~v~~l  176 (197)
                      +.+++++.+
T Consensus       178 ~R~~~~i~~  186 (297)
T 3b9p_A          178 RRFTKRVYV  186 (297)
T ss_dssp             HHCCEEEEC
T ss_pred             hhCCeEEEe
Confidence            556666554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.15  E-value=3.9e-07  Score=68.66  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=23.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEEC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN   30 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~   30 (197)
                      +||||||||||+++|++..++...|.|...
T Consensus        11 ~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             ECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            599999999999999998752256666543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.12  E-value=4.9e-07  Score=74.60  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc-----cceEEEE-ecCCCCCCCCCHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM-----SRISGYV-AQQDFLIEELTVLEHLQFM   65 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~~~~~~ltv~e~l~~~   65 (197)
                      +|+||+||||++..|++.+. +..|+|.+.+.++...       .+     +..+.++ +|.....|..++.+++...
T Consensus       111 vG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~~  187 (320)
T 1zu4_A          111 VGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKA  187 (320)
T ss_dssp             ESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHHHH
Confidence            49999999999999999887 5789999988876431       12     3457888 7766566655667776654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.12  E-value=1e-05  Score=67.36  Aligned_cols=58  Identities=5%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q psy4235         102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIH  160 (197)
Q Consensus       102 ~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii~th  160 (197)
                      ..+..++++..+++..+.+|+++|+.-..+..|... ....++++.+...+ .++++++.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            356788999999999999999888874444455443 45567777776555 46666665

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.11  E-value=3e-07  Score=71.90  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=30.4

Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235         117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV  191 (197)
Q Consensus       117 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~  191 (197)
                      ++..|+..+++|+..+.|..+...+.+.++....     .....+++.|+. +.+.+.+++++-... ++.....+.+++
T Consensus       145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~-e~~~~~l~~~i~~~~-~~~~~~~~~~~~  222 (231)
T 3lnc_A          145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDI-EETADRISNILRAEQ-MKTCRQVGLREL  222 (231)
T ss_dssp             EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSH-HHHHHHHHHHHHHHH-TBGGGEESHHHH
T ss_pred             EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCH-HHHHHHHHHHHHHHh-hccccCcchhhH
Confidence            3556677778888999888777777766654432     123455666654 345555555443322 333233444444


Q ss_pred             H
Q psy4235         192 L  192 (197)
Q Consensus       192 ~  192 (197)
                      +
T Consensus       223 ~  223 (231)
T 3lnc_A          223 L  223 (231)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.09  E-value=3.1e-07  Score=80.34  Aligned_cols=139  Identities=11%  Similarity=0.043  Sum_probs=74.5

Q ss_pred             CCCCCCcHHHHHHHHhcC----------------------c-C--------------CCceeEEEECCeeCCccc----c
Q psy4235           1 MSPSGAGKTTLLAALNKR----------------------V-K--------------GLVQGEILLNGCPISRTV----M   39 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~----------------------~-~--------------~~~~G~i~~~g~~~~~~~----~   39 (197)
                      +|+||||||||+.+|..+                      + .              ...++.+++||.+++...    .
T Consensus        66 ~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~  145 (517)
T 4ad8_A           66 TGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA  145 (517)
T ss_dssp             EESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence            599999999999999554                      2 1              012567888888876421    2


Q ss_pred             cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHh
Q psy4235          40 SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLL  118 (197)
Q Consensus        40 ~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~  118 (197)
                      ...+.+++|...+....+... ..|.-..................++++.+. +..........++-.+.|...|..+  
T Consensus       146 ~~li~i~~q~~~~~l~~~~~r-r~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~--  222 (517)
T 4ad8_A          146 QGRLTIHWQHSAVSLLSPANQ-RGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEV--  222 (517)
T ss_dssp             TTTEEEESGGGGGTTTSHHHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hhheEEeCCchHHhcCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--
Confidence            234678899866555433322 222211110000011111222333333321 1111222345678888888888887  


Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                                   .|.+...+.+.+.++.++..+..+
T Consensus       223 -------------~l~~~E~e~L~~~~~~L~~~~~~~  246 (517)
T 4ad8_A          223 -------------SPDPGEEEGLNTELSRLSNLHESS  246 (517)
T ss_dssp             -------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred             -------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence                         355556777888888876655443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.09  E-value=7.1e-08  Score=72.02  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=24.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS   35 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~   35 (197)
                      +|+|||||||++++|++.+     |.+.+++.++.
T Consensus        14 ~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~   43 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLH   43 (175)
T ss_dssp             ECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGC
T ss_pred             EcCCCCCHHHHHHHHHHhh-----CcEEEeCcccc
Confidence            5999999999999998753     66788876653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.06  E-value=1.1e-06  Score=79.10  Aligned_cols=118  Identities=10%  Similarity=0.016  Sum_probs=65.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +|+||+|||||++.|++...+ ...|+| .+|..+...   ..++.+++.+|...++.. ++..|               
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n---------------   77 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF---------------   77 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---------------
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---------------
Confidence            599999999999999976541 256887 566555321   123445666655443321 11111               


Q ss_pred             HHHHHHHHHHHHHcCCcccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          77 LELNKTITRVMENLGINHRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                                        ..+.+.. .++     .......-..+..++++| |+.++++.+.. +   ++.+...+..+
T Consensus        78 ------------------liDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~---~~~~~~~~ip~  129 (665)
T 2dy1_A           78 ------------------LLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-A---WTVAERLGLPR  129 (665)
T ss_dssp             ------------------EEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-H---HHHHHHTTCCE
T ss_pred             ------------------EEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-H---HHHHHHccCCE
Confidence                              1111100 010     111222234677888899 99999987652 3   33333456777


Q ss_pred             EEEecCCc
Q psy4235         156 ICAIHQPT  163 (197)
Q Consensus       156 ii~th~~~  163 (197)
                      |++.|..+
T Consensus       130 ilv~NKiD  137 (665)
T 2dy1_A          130 MVVVTKLD  137 (665)
T ss_dssp             EEEEECGG
T ss_pred             EEEecCCc
Confidence            78888754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.00  E-value=2.3e-06  Score=69.85  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCcchHHhhcCeEE
Q psy4235         103 LSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDSYS-ANNVVNLLKQLACE-SR--IVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus       103 LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~~~-~~~i~~~l~~l~~~-~~--~iii~th~~~~~~~~~~d~v~  174 (197)
                      +|.|++   .+++.+.  ..|.++++    |.+|... +..+.+.+.++++. +.  .+.+++|+. ..+..++|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence            898886   4566666  78999998    8999887 67788888888764 42  455566654 35666666553

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.99  E-value=3.3e-07  Score=70.09  Aligned_cols=33  Identities=36%  Similarity=0.598  Sum_probs=27.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE--EECCeeCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI--LLNGCPIS   35 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i--~~~g~~~~   35 (197)
                      +||||||||||+++|++.+.  ..|.+  +++|.++.
T Consensus        31 ~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVR   65 (200)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhh
Confidence            59999999999999999875  56777  88877653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.97  E-value=9.9e-07  Score=69.03  Aligned_cols=29  Identities=34%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      .|+||||||||+++|+|.     .|+|.+.+++.
T Consensus        26 ~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~   54 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY-----KNDICLLTEPV   54 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred             ECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence            499999999999999986     57788888775

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.97  E-value=1.9e-07  Score=72.37  Aligned_cols=49  Identities=24%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc---CCCceeEEEE--------CCeeCCc----ccccceEEEEecCC
Q psy4235           1 MSPSGAGKTTLLAALNKRV---KGLVQGEILL--------NGCPISR----TVMSRISGYVAQQD   50 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~---~~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~q~~   50 (197)
                      +|||||||||+.++|++.+   . ++.|.+..        +|.++..    ..+.+.+++++|++
T Consensus        11 ~G~~GsGKSTl~~~L~~~~g~~~-~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAEALQWHL-LDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTCEE-EEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCc-ccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            5999999999999999765   4 57888877        6766642    12345578888764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.91  E-value=8.9e-07  Score=67.84  Aligned_cols=33  Identities=21%  Similarity=0.094  Sum_probs=27.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      +|+||||||||+++|++.+. +..|.|.+.+.+.
T Consensus        28 ~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d~   60 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQTLR-EQGISVCVFHMDD   60 (201)
T ss_dssp             EECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGGG
T ss_pred             ECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccCc
Confidence            49999999999999999886 5678887766553

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.90  E-value=1.6e-05  Score=60.32  Aligned_cols=50  Identities=12%  Similarity=0.166  Sum_probs=29.0

Q ss_pred             hCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHh
Q psy4235         119 TEPQILFCDEPTT-GLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFE  168 (197)
Q Consensus       119 ~~p~llllDEPts-~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~  168 (197)
                      .++++|++||+-. .++...+..++ .++......+..+|++|+.....+..
T Consensus       114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred             cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence            4678999999932 34443344444 46655445566777877765444433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.89  E-value=8.2e-06  Score=69.86  Aligned_cols=142  Identities=12%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcC-----------CCceeEEEECCeeCC---cccccceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVK-----------GLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLEHLQFMA   66 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~-----------~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~   66 (197)
                      +|+||+|||||+|.|+|...           .+.+|.+.++|.++.   ....++..++.+|....|..++..+++...-
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad  265 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKAD  265 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCS
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCC
Confidence            69999999999999998742           135799999998652   2222333445556555555555555554421


Q ss_pred             Hc----cCCccccHHHHHHHHHHHHHHcCCc-----ccccccC-CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q psy4235          67 KL----TMDRRTTWLELNKTITRVMENLGIN-----HRRQVQI-SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLD  134 (197)
Q Consensus        67 ~~----~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~-~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD  134 (197)
                      ..    ........  ....+.+.+...+..     +..|..- ..-+.-+- .-.+++.+.  ...+++    ++|++.
T Consensus       266 ~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~SA~~  338 (439)
T 1mky_A          266 VVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FTSADK  338 (439)
T ss_dssp             EEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----ECBTTT
T ss_pred             EEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EEECCC
Confidence            00    00011111  123445555555532     1222111 01111111 113334332  334443    489999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4235         135 SYSANNVVNLLKQLA  149 (197)
Q Consensus       135 ~~~~~~i~~~l~~l~  149 (197)
                      -....++++.+.+..
T Consensus       339 g~gv~~l~~~i~~~~  353 (439)
T 1mky_A          339 GWNIDRMIDAMNLAY  353 (439)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            888888888876654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.87  E-value=8.6e-05  Score=57.93  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=29.9

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecC
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQ  161 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~iii~th~  161 (197)
                      .+|+++|+..+.+.++......+..++..+...  ..++|+.+|-
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            378999999998888887666665555444321  3577888874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.85  E-value=3.1e-05  Score=63.24  Aligned_cols=44  Identities=11%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             hCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         119 TEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      .++++|++||+-. .-+...+..++..+..+...+..+|++++..
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~  141 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  141 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            5699999999865 2344778889999988877777788877754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.83  E-value=2.6e-06  Score=70.47  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+|||||++.+++...
T Consensus        51 ~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             EECTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            49999999999999998654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.82  E-value=3.6e-06  Score=69.42  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||+++|++++.
T Consensus        98 ~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHhc
Confidence            59999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.79  E-value=4.7e-06  Score=64.08  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||++.|++..+
T Consensus        25 ~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHHCT
T ss_pred             ECcCCCCHHHHHHHHHhhCC
Confidence            59999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.77  E-value=8.6e-06  Score=63.73  Aligned_cols=67  Identities=21%  Similarity=0.045  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235         103 LSGGQRKRLALAVQLLTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD  171 (197)
Q Consensus       103 LSgGq~qrv~ia~al~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d  171 (197)
                      .+-|...+..  ...+.+.+++++||.-. ++|.......++.+.....+-.+++++..-+.+...++++
T Consensus       161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~  228 (235)
T 3llm_A          161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF  228 (235)
T ss_dssp             EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred             ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence            3456655553  33578999999999976 5777666444444444333334555554444434444443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.77  E-value=6.2e-05  Score=61.67  Aligned_cols=52  Identities=12%  Similarity=0.178  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE--EEEEe
Q psy4235         103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI--VICAI  159 (197)
Q Consensus       103 LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~--iii~t  159 (197)
                      ||.++++|+..|...+.++++++.|+|...     ...+...++++.++ +..  +|++-
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID  188 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMID  188 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            788888888888888888888888888533     34455666666544 444  55553

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.76  E-value=7.5e-06  Score=62.98  Aligned_cols=20  Identities=40%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||++.|++.++
T Consensus        14 ~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHSTT
T ss_pred             ECcCCCCHHHHHHHHHhhCC
Confidence            59999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.75  E-value=7.6e-06  Score=60.56  Aligned_cols=20  Identities=35%  Similarity=0.632  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||+++|++.+.
T Consensus        10 ~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             ECCTTSCHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            59999999999999998765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.71  E-value=0.00026  Score=58.60  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=43.5

Q ss_pred             HHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHhC-CCEEEEEecCCcc-------
Q psy4235         109 KRLALAVQLL----TEPQILFCDEPTTGLDSY------------SANNVVNLLKQLACE-SRIVICAIHQPTS-------  164 (197)
Q Consensus       109 qrv~ia~al~----~~p~llllDEPts~LD~~------------~~~~i~~~l~~l~~~-~~~iii~th~~~~-------  164 (197)
                      +.+..++.++    .+++++++|+.++-....            ...++...|+.++++ +.+||++.|....       
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~  283 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF  283 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCcccc
Confidence            4555556665    579999999999865432            124555556666554 7787777764321       


Q ss_pred             -----------hHHhhcCeEEEEeC
Q psy4235         165 -----------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 -----------~~~~~~d~v~~l~~  178 (197)
                                 .+...+|-++.+..
T Consensus       284 ~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          284 QADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             ---------CCTTTTSSSEEEEEEE
T ss_pred             CCCCCcCCchHHHHHhCCEEEEEEE
Confidence                       13456787777764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.69  E-value=3.1e-05  Score=59.68  Aligned_cols=44  Identities=11%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q psy4235         119 TEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRI-VICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~-iii~th~~  162 (197)
                      .+|.++++||...-- +......+.+.+......+.. +|++++..
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~  148 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS  148 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            578999999965422 233377788888887766655 77777743

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.60  E-value=7.7e-06  Score=68.12  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      +|++|||||||+|.|+|... +..|+|.+.+.+.
T Consensus        80 vG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp  112 (349)
T 2www_A           80 SGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP  112 (349)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred             EcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence            59999999999999999776 4667776665543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.57  E-value=0.00032  Score=57.56  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEecCCcc-------
Q psy4235         108 RKRLALAVQLL---TEPQILFCDEPTTGLDS--------YS----ANNVVNLLKQLACE-SRIVICAIHQPTS-------  164 (197)
Q Consensus       108 ~qrv~ia~al~---~~p~llllDEPts~LD~--------~~----~~~i~~~l~~l~~~-~~~iii~th~~~~-------  164 (197)
                      .+.+..++.++   .+|+++++|+.++-...        ..    ..+++..|+.++++ +.+||++.|-...       
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~  267 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGD  267 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----------
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCC
Confidence            35677777777   67999999999875432        11    23455555565544 7788887664311       


Q ss_pred             --------hHHhhcCeEEEEeC
Q psy4235         165 --------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 --------~~~~~~d~v~~l~~  178 (197)
                              .+.+.+|.++.+..
T Consensus       268 ~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          268 PTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             --------------CEEEEEEE
T ss_pred             CCCCCchHHHHhhCcEEEEEEE
Confidence                    13445677777753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=5e-07  Score=74.36  Aligned_cols=42  Identities=10%  Similarity=0.083  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      +++++++|| ...+++..+..+.+.+.+... ...+|++++++.
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence            667999999 788999888888888877643 345666666543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.52  E-value=3.9e-05  Score=58.53  Aligned_cols=19  Identities=37%  Similarity=0.482  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|||||||++.|++.+
T Consensus        27 ~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EESTTSSHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.52  E-value=0.00018  Score=58.30  Aligned_cols=19  Identities=37%  Similarity=0.611  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||.++|++..
T Consensus        55 ~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             ECSSSSSHHHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHHHHh
Confidence            4999999999999999754

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.51  E-value=2.6e-05  Score=66.53  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCce
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQ   24 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~   24 (197)
                      +||||||||||+++|+++.. +.+
T Consensus        32 ~G~nG~GKstll~ai~~~~~-~~~   54 (430)
T 1w1w_A           32 IGPNGSGKSNMMDAISFVLG-VRS   54 (430)
T ss_dssp             ECSTTSSHHHHHHHHHHHTT-C--
T ss_pred             ECCCCCCHHHHHHHHHhhhc-ccc
Confidence            59999999999999999876 444

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.50  E-value=3.2e-05  Score=56.55  Aligned_cols=16  Identities=38%  Similarity=0.708  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|||||||||++.+|.
T Consensus        29 ~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999997

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.48  E-value=0.0005  Score=57.33  Aligned_cols=70  Identities=9%  Similarity=0.030  Sum_probs=41.2

Q ss_pred             HHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hCCCEEEEEecCCcc-----
Q psy4235         109 KRLALAVQLL--TEPQILFCDEPTTGLDSY-------------SANNVVNLLKQL---A-CESRIVICAIHQPTS-----  164 (197)
Q Consensus       109 qrv~ia~al~--~~p~llllDEPts~LD~~-------------~~~~i~~~l~~l---~-~~~~~iii~th~~~~-----  164 (197)
                      +-..+++.++  .+++++++|++++-....             ..+.+.+.++.+   . +.+.+||++.|-...     
T Consensus       128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f  207 (356)
T 1u94_A          128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF  207 (356)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred             HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            3445556554  689999999998766321             112344444444   3 447888887764221     


Q ss_pred             ----------hHHhhcCeEEEEeC
Q psy4235         165 ----------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 ----------~~~~~~d~v~~l~~  178 (197)
                                .+...+|-++.+..
T Consensus       208 g~~~~~~gG~~l~~~advrl~l~r  231 (356)
T 1u94_A          208 GNPETTTGGNALKFYASVRLDIRR  231 (356)
T ss_dssp             -----CTTCSHHHHHCSEEEEEEE
T ss_pred             CCCcccCCCcceeeeccEEEEEEE
Confidence                      24567887777765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.47  E-value=1.6e-05  Score=66.49  Aligned_cols=30  Identities=27%  Similarity=0.209  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG   31 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g   31 (197)
                      +|+||+|||||++.|.|... ...+.+..++
T Consensus        43 vG~~g~GKSTLln~L~~~~~-~~~~~~~~~~   72 (361)
T 2qag_A           43 VGESGLGKSTLINSLFLTDL-YPERVIPGAA   72 (361)
T ss_dssp             CCCTTSCHHHHHHHHTTCCC-----------
T ss_pred             EcCCCCCHHHHHHHHhCCCC-CCCCcccCCC
Confidence            69999999999999987644 3444443333

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.44  E-value=0.0029  Score=54.09  Aligned_cols=76  Identities=17%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecCCc----
Q psy4235         101 SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDS----------YSANNVVNLLKQLACE-SRIVICAIHQPT----  163 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~~-~~~iii~th~~~----  163 (197)
                      ..+|..+.  .+.++.+.  .+++++++|..+.-...          .....+.+.|+.++++ +.+||+++|-..    
T Consensus       291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~  368 (444)
T 2q6t_A          291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA  368 (444)
T ss_dssp             TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred             CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence            45676654  34455554  58999999998754332          1224567777777765 778888877311    


Q ss_pred             --------------chHHhhcCeEEEEeC
Q psy4235         164 --------------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       164 --------------~~~~~~~d~v~~l~~  178 (197)
                                    ..+.+.||.|+++..
T Consensus       369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          369 RPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             SSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             CCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence                          024677999998853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=7.2e-05  Score=55.57  Aligned_cols=18  Identities=28%  Similarity=0.508  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.++|.
T Consensus        13 vG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999984

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.41  E-value=0.00012  Score=53.56  Aligned_cols=19  Identities=26%  Similarity=0.443  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.++|..
T Consensus         9 vG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.38  E-value=4.5e-05  Score=67.08  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=26.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~   33 (197)
                      +||||+|||||+++|++... +..|.|.+.|..
T Consensus       114 ~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~~  145 (543)
T 3m6a_A          114 AGPPGVGKTSLAKSIAKSLG-RKFVRISLGGVR  145 (543)
T ss_dssp             ESSSSSSHHHHHHHHHHHHT-CEEEEECCCC--
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CCeEEEEecccc
Confidence            49999999999999999887 678998887743

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.30  E-value=0.00015  Score=53.57  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.++|..
T Consensus        10 vG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.29  E-value=0.0012  Score=52.48  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             HHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---hCCC-EEEEEecC
Q psy4235         115 VQLLTEPQILFCDEPTTG----------LDSYSANNVVNLLKQLA---CESR-IVICAIHQ  161 (197)
Q Consensus       115 ~al~~~p~llllDEPts~----------LD~~~~~~i~~~l~~l~---~~~~-~iii~th~  161 (197)
                      .+....|.+|++||.-.-          -+...+..+..++..+.   ..+. .+|.+|+.
T Consensus       105 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~  165 (285)
T 3h4m_A          105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR  165 (285)
T ss_dssp             HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred             HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence            334457889999997432          36666777888887763   2233 44555543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.29  E-value=6e-05  Score=57.25  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+|||||||+.++|++
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            49999999999999998

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.28  E-value=6.4e-05  Score=62.84  Aligned_cols=17  Identities=47%  Similarity=0.552  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +||||||||||+++|.+
T Consensus        32 ~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           32 YGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCChhHHHHHHHH
Confidence            59999999999999987

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.28  E-value=3.4e-05  Score=57.52  Aligned_cols=32  Identities=41%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee--EEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG--EILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G--~i~~~g~~~   34 (197)
                      +|++||||||+.++|++.+. + .|  .|.+++..+
T Consensus        11 ~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~~~   44 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGDNI   44 (179)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECChHH
Confidence            49999999999999998764 2 45  566665544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.27  E-value=0.00026  Score=58.42  Aligned_cols=19  Identities=26%  Similarity=0.462  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||++.++...
T Consensus        50 ~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.27  E-value=4e-05  Score=58.80  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee--EEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG--EILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G--~i~~~g~~~   34 (197)
                      +|++||||||+.+.|++.+. +..|  .+.+++..+
T Consensus        31 ~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDNI   65 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChHH
Confidence            49999999999999998876 4678  778776443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.24  E-value=0.002  Score=50.31  Aligned_cols=19  Identities=37%  Similarity=0.636  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||.+.++...
T Consensus        45 ~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            3999999999999998643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.19  E-value=0.00012  Score=56.21  Aligned_cols=16  Identities=38%  Similarity=0.708  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|||||||||++.+|.
T Consensus        29 ~G~NgsGKStil~ai~   44 (203)
T 3qks_A           29 IGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.17  E-value=0.0002  Score=60.64  Aligned_cols=31  Identities=13%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CCCCCCcHHHHHHHHhcC-----------cCCCceeEEEECCe
Q psy4235           1 MSPSGAGKTTLLAALNKR-----------VKGLVQGEILLNGC   32 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~-----------~~~~~~G~i~~~g~   32 (197)
                      +|+||+|||||+++|+|.           .. |..|.+.+.+.
T Consensus        28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-p~~g~v~v~~~   69 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNSQASAENFPFCTID-PNESRVPVPDE   69 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC-------------C-CSEEEEECCCH
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCccccC-ceeEEEEECCc
Confidence            699999999999999987           33 57788887764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.14  E-value=0.0034  Score=52.04  Aligned_cols=19  Identities=26%  Similarity=0.524  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||.++|+...
T Consensus       123 ~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          123 FGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             ESSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.12  E-value=5.6e-05  Score=62.57  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=25.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      +|+||||||||++.|++.+. +..|+|.+-+.+.
T Consensus        62 ~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~d~   94 (341)
T 2p67_A           62 TGTPGAGKSTFLEAFGMLLI-REGLKVAVIAVDP   94 (341)
T ss_dssp             EECTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred             EcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeecC
Confidence            59999999999999998876 4566666655543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00015  Score=54.99  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|++.+
T Consensus        24 ~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.08  E-value=0.0013  Score=56.93  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS   35 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~   35 (197)
                      +|||||||||||++|+|+++ |++|+|.++|.++.
T Consensus        35 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~   68 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA   68 (483)
T ss_dssp             ECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred             ECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence            59999999999999999998 79999999998874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.07  E-value=0.00016  Score=54.23  Aligned_cols=33  Identities=33%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~   33 (197)
                      +|++|||||||++.|.+.+.+  ..-|.|..++.+
T Consensus        12 ~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            499999999999999986531  134777776543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.07  E-value=0.00018  Score=53.52  Aligned_cols=19  Identities=47%  Similarity=0.629  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.++|..
T Consensus         8 vG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC-
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.05  E-value=0.00019  Score=54.70  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||.+.|+..++
T Consensus        18 ~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCc
Confidence            59999999999999987653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.03  E-value=0.00046  Score=53.86  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=39.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcchHHhhcCeEEEEe
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH---------QPTSGVFEKFDTVSLLA  177 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th---------~~~~~~~~~~d~v~~l~  177 (197)
                      +++++++||--. |+..    +.+.++.++..+..||++-|         .....+..+||+|.-|.
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999954 5543    44555666666899999998         44456788999998763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.0002  Score=54.38  Aligned_cols=19  Identities=42%  Similarity=0.520  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|+..+
T Consensus        31 ~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHc
Confidence            5999999999999999754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.98  E-value=0.00012  Score=54.74  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI   27 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i   27 (197)
                      +|++||||||+.+.|+..+. ...+.+
T Consensus        19 ~G~~GsGKsT~~~~L~~~l~-~~~~~~   44 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADLLQ-KEGYRV   44 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred             EcCCCCCHHHHHHHHHHHHH-hcCCeE
Confidence            49999999999999998765 344544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.94  E-value=0.00034  Score=55.00  Aligned_cols=30  Identities=30%  Similarity=0.423  Sum_probs=22.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~   33 (197)
                      .||+|+|||||+++|++....+   -+.+++.+
T Consensus        51 ~G~~GtGKT~la~~la~~~~~~---~~~i~~~~   80 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAGEAKVP---FFTISGSD   80 (257)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTCC---EEEECSCS
T ss_pred             ECcCCCCHHHHHHHHHHHcCCC---EEEEeHHH
Confidence            4999999999999999865422   25555443

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.89  E-value=0.00032  Score=51.33  Aligned_cols=19  Identities=32%  Similarity=0.350  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|+..+
T Consensus         7 ~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             ECSSSSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.84  E-value=0.00034  Score=55.52  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++||||||+.++|++.+.
T Consensus        54 ~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ECSTTSCHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhcC
Confidence            59999999999999997543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.83  E-value=0.00066  Score=50.79  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc----C---CCceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRV----K---GLVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~----~---~~~~G~i~~~g~~   33 (197)
                      +|++|+|||||++.+.+-.    .   .++.+++.++|..
T Consensus        29 vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   68 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK   68 (190)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence            5999999999999998732    1   1245677777643

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.83  E-value=0.00039  Score=52.75  Aligned_cols=18  Identities=50%  Similarity=0.702  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||||||||||++.|...
T Consensus         7 ~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.81  E-value=0.00021  Score=60.97  Aligned_cols=34  Identities=29%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS   35 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~   35 (197)
                      +|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus       104 ~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~  137 (425)
T 2ffh_A          104 VGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ  137 (425)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSS
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecccc
Confidence            49999999999999999987 57788988877654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.81  E-value=0.00057  Score=51.57  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc----C---CCceeEEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRV----K---GLVQGEILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~----~---~~~~G~i~~~g~~   33 (197)
                      +|++|+|||||++.+.+-.    .   .++.+.+.++|..
T Consensus        31 vG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            5999999999999998631    1   1245677776643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.77  E-value=0.00029  Score=59.11  Aligned_cols=60  Identities=17%  Similarity=0.099  Sum_probs=46.6

Q ss_pred             hCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCcch-----------HHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTTGLD---SYSANNVVNLLKQLACESRIVICAIHQPTSG-----------VFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~iii~th~~~~~-----------~~~~~d~v~~l~~  178 (197)
                      ..|.++++||--.-++   +.....+.+++++.++.|..++++||.+.+.           +...|+..+++..
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~  334 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ  334 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence            3588999999988884   7778889999999998899999999987532           2345666666643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.76  E-value=0.00036  Score=54.47  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=23.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC   32 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~   32 (197)
                      .|++||||||+++.|+..+. . .+.+.....
T Consensus        32 ~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~~~   61 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYHRLV-K-DYDVIMTRE   61 (229)
T ss_dssp             ECCTTSCHHHHHHHHHHHHT-T-TSCEEEECT
T ss_pred             EcCCCCCHHHHHHHHHHHHh-c-CCCceeecC
Confidence            49999999999999998876 4 456654433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.76  E-value=0.0011  Score=49.39  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc----CCCcee----EEEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRV----KGLVQG----EILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~----~~~~~G----~i~~~g~~   33 (197)
                      +|++|+|||||++.+++..    ..++.+    .+.++|..
T Consensus        26 vG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             ECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            6999999999998766532    114545    55566543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.76  E-value=0.0066  Score=49.37  Aligned_cols=69  Identities=12%  Similarity=0.024  Sum_probs=40.3

Q ss_pred             HHHHHHHHh---hCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHhC-CCEEEEEecCCcc---------
Q psy4235         110 RLALAVQLL---TEPQILFCDEPTTGLD--------SYS----ANNVVNLLKQLACE-SRIVICAIHQPTS---------  164 (197)
Q Consensus       110 rv~ia~al~---~~p~llllDEPts~LD--------~~~----~~~i~~~l~~l~~~-~~~iii~th~~~~---------  164 (197)
                      -+..++.++   .+++++++|.-++-..        ...    ..++...|+.++++ +.+||++.|-...         
T Consensus       191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~  270 (322)
T 2i1q_A          191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE  270 (322)
T ss_dssp             HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred             HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence            344455555   4589999998875321        111    23455555565544 6677776552110         


Q ss_pred             ------hHHhhcCeEEEEeC
Q psy4235         165 ------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 ------~~~~~~d~v~~l~~  178 (197)
                            .+.+.+|.++.+..
T Consensus       271 ~~~g~~~~~~~~d~~i~l~~  290 (322)
T 2i1q_A          271 QAIGGHIVGHAATFRFFVRK  290 (322)
T ss_dssp             EESSHHHHHHHCSEEEEEEE
T ss_pred             CCCCcHHHHhcCcEEEEEEe
Confidence                  25567888888864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.73  E-value=0.00052  Score=50.67  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++||||||+.+.|+..+.
T Consensus         9 ~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHHhcC
Confidence            49999999999999986543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.69  E-value=0.00058  Score=50.50  Aligned_cols=19  Identities=42%  Similarity=0.566  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|+..+
T Consensus        10 ~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A           10 IGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHc
Confidence            4999999999999998644

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.68  E-value=0.00058  Score=50.76  Aligned_cols=17  Identities=41%  Similarity=0.673  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++||||||+.+.|+.
T Consensus        10 ~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999984

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.63  E-value=0.00019  Score=58.37  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS   35 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~   35 (197)
                      +|+||+||||++..|++.+. +..++|.+.+.+..
T Consensus       104 ~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~  137 (297)
T 1j8m_F          104 VGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVY  137 (297)
T ss_dssp             ECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence            49999999999999999887 56778887766653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.62  E-value=0.00033  Score=55.35  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      +|++||||||+.+.|+..+.   .+.+.+++..+
T Consensus        38 ~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~   68 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF   68 (253)
T ss_dssp             ESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred             ECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence            49999999999999987653   24566776544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.61  E-value=0.00068  Score=49.35  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAAL   15 (197)
Q Consensus         1 iG~nGaGKSTLl~~i   15 (197)
                      .|++||||||+.+.|
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999999

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.60  E-value=0.00065  Score=53.74  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||||||||||.+.|+..+
T Consensus         7 ~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHhcC
Confidence            5999999999999998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.58  E-value=0.00059  Score=54.30  Aligned_cols=45  Identities=9%  Similarity=0.073  Sum_probs=31.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEE
Q psy4235         129 PTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus       129 Pts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      |+|+.+.....++++.+.+.... ..+..+..|.. ..+.+.++++.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~  189 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHIS  189 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHH
Confidence            99999999999999999887654 33434555554 45666666653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.57  E-value=0.00077  Score=49.60  Aligned_cols=17  Identities=24%  Similarity=0.354  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|++||||||+.+.|+.
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49999999999999985

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.57  E-value=0.00077  Score=50.63  Aligned_cols=19  Identities=37%  Similarity=0.674  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|++||||||+.+.|+..+
T Consensus         6 ~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHhc
Confidence            4999999999999998744

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.51  E-value=0.0012  Score=55.28  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc----------CCCceeEEEECC
Q psy4235           1 MSPSGAGKTTLLAALNKRV----------KGLVQGEILLNG   31 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~----------~~~~~G~i~~~g   31 (197)
                      +|.+|+|||||++.|++..          ..|..|.+.+.+
T Consensus         8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            6999999999999999832          114567777765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.46  E-value=0.0011  Score=49.12  Aligned_cols=18  Identities=22%  Similarity=0.161  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+-.
T Consensus         9 ~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.46  E-value=0.0026  Score=52.34  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHH--h--hCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHHH----HhCCCEEEEEecC
Q psy4235         106 GQRKRLALAVQL--L--TEPQILFCDEPTTGLD-----S----------YSANNVVNLLKQL----ACESRIVICAIHQ  161 (197)
Q Consensus       106 Gq~qrv~ia~al--~--~~p~llllDEPts~LD-----~----------~~~~~i~~~l~~l----~~~~~~iii~th~  161 (197)
                      ++++.+.++.++  +  .+|++++.|--++=..     -          ...+.+.+.|+++    ++.+.++|++-|-
T Consensus        93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV  171 (333)
T 3io5_A           93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT  171 (333)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence            444545566555  3  4799999998765431     0          1223344445443    3457788887765

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.41  E-value=0.0049  Score=44.10  Aligned_cols=42  Identities=10%  Similarity=0.098  Sum_probs=30.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      +..+|++||. ..+++..+..+++.+.+....+..+|++|...
T Consensus        75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence            4578999996 46788888888888877543345667776654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.40  E-value=0.00087  Score=55.95  Aligned_cols=16  Identities=25%  Similarity=0.619  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|||||||||+|.+|.
T Consensus        31 ~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           31 IGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.38  E-value=0.0004  Score=52.77  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .|++||||||+++.|+..+.
T Consensus         6 ~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHH
Confidence            48999999999999987664

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0011  Score=49.21  Aligned_cols=19  Identities=37%  Similarity=0.588  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.+++..
T Consensus        54 vG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.36  E-value=0.0012  Score=49.03  Aligned_cols=18  Identities=39%  Similarity=0.464  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++||||||+.+.|+..
T Consensus        11 ~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.36  E-value=0.0012  Score=48.89  Aligned_cols=17  Identities=41%  Similarity=0.487  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++||||||+.+.|+-
T Consensus        17 ~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           17 TGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            49999999999999983

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.31  E-value=0.0016  Score=49.88  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|++||||||+.+.|+.
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.30  E-value=0.0011  Score=49.42  Aligned_cols=18  Identities=39%  Similarity=0.407  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+-.
T Consensus        11 ~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A           11 TGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.30  E-value=0.0016  Score=51.17  Aligned_cols=17  Identities=29%  Similarity=0.630  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .||+||||||+.+.|+.
T Consensus        15 ~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999984

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.28  E-value=0.0013  Score=51.16  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++||||||+.+.|++.
T Consensus        22 ~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             ECSSCSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999863

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.28  E-value=0.0014  Score=47.24  Aligned_cols=18  Identities=17%  Similarity=0.374  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        11 ~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHC
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.27  E-value=0.0014  Score=52.79  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG   31 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g   31 (197)
                      .||+||||||+.+.|+..+.   .|.+.+++
T Consensus        39 ~G~sGsGKSTla~~L~~~~~---~~~~~Is~   66 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFEETQ---GNVIVIDN   66 (287)
T ss_dssp             ECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             ECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence            49999999999999975432   24566654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.27  E-value=0.0012  Score=49.03  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|++||||||+.+.|+-.+
T Consensus         7 ~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EECTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.27  E-value=0.0015  Score=52.38  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.++|..
T Consensus         9 vG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCC
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999853

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.24  E-value=0.0015  Score=48.75  Aligned_cols=18  Identities=22%  Similarity=0.458  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++||||||+.+.|+..
T Consensus        16 ~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0017  Score=46.89  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus         9 ~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.22  E-value=0.0016  Score=46.66  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus         7 ~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             ECCTTSSHHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.22  E-value=0.0016  Score=48.66  Aligned_cols=20  Identities=25%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++|||||||++.|+..+.
T Consensus        10 ~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A           10 VGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhhH
Confidence            49999999999999987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.21  E-value=0.0017  Score=47.12  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        10 ~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-
T ss_pred             ECCCCccHHHHHHHHhcCC
Confidence            5999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.19  E-value=0.0017  Score=53.25  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHH--HcCCcccccccCCCCCHHHHHHH-HHHHHH
Q psy4235          76 WLELNKTITRVME--NLGINHRRQVQISGLSGGQRKRL-ALAVQL  117 (197)
Q Consensus        76 ~~~~~~~~~~~l~--~~~l~~~~~~~~~~LSgGq~qrv-~ia~al  117 (197)
                      ..+..+.+..+++  .+++++...+.+..+|+|+.|++ .+...+
T Consensus       171 ~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~  215 (340)
T 1sxj_C          171 QEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSC  215 (340)
T ss_dssp             HHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3444555666663  45566666677888999999885 344333

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.19  E-value=0.0013  Score=47.46  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.++|..
T Consensus         8 vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC-
T ss_pred             ECCCCCCHHHHHHHHcCcc
Confidence            5999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.18  E-value=0.0013  Score=46.97  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus         9 ~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.17  E-value=0.0013  Score=48.69  Aligned_cols=18  Identities=44%  Similarity=0.567  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+.
T Consensus        22 vG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EESTTSSHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.16  E-value=0.0017  Score=46.57  Aligned_cols=18  Identities=22%  Similarity=0.374  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        10 ~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.16  E-value=0.0019  Score=46.72  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+++..
T Consensus         8 vG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            8 VGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHHCC-
T ss_pred             ECCCCCCHHHHHHHHHhcc
Confidence            5999999999999998643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.15  E-value=0.0018  Score=46.43  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus         9 ~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.15  E-value=0.0018  Score=46.70  Aligned_cols=19  Identities=16%  Similarity=0.433  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        12 ~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.14  E-value=0.0017  Score=47.27  Aligned_cols=18  Identities=33%  Similarity=0.604  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        15 ~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             ECCTTSCHHHHHHHHCSC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999874

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.12  E-value=0.21  Score=43.04  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             HHHHHHHHHh--hCCCEEEEeCCCCCCC-------H-HHHHHHHHHHHHHHhC-CCEEEEEecCCc--------------
Q psy4235         109 KRLALAVQLL--TEPQILFCDEPTTGLD-------S-YSANNVVNLLKQLACE-SRIVICAIHQPT--------------  163 (197)
Q Consensus       109 qrv~ia~al~--~~p~llllDEPts~LD-------~-~~~~~i~~~l~~l~~~-~~~iii~th~~~--------------  163 (197)
                      +.+..++.++  .+|+++++|=-+ .+.       . ....++...|+.++++ +.+||+++|-..              
T Consensus       341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~  419 (503)
T 1q57_A          341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS  419 (503)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence            3344445444  479999999543 332       1 2234566777777665 788888877431              


Q ss_pred             -------chHHhhcCeEEEEeC
Q psy4235         164 -------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       164 -------~~~~~~~d~v~~l~~  178 (197)
                             ..+.+.+|-|+.|..
T Consensus       420 l~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          420 ITDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             SSSCSSSSHHHHHCSEEEEEEE
T ss_pred             hhhhccchHhhecCcEEEEEEe
Confidence                   124566899988863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.12  E-value=0.0019  Score=46.66  Aligned_cols=18  Identities=22%  Similarity=0.348  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        12 ~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHC
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.11  E-value=0.0019  Score=46.54  Aligned_cols=19  Identities=11%  Similarity=0.305  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.09  E-value=0.002  Score=47.02  Aligned_cols=19  Identities=32%  Similarity=0.478  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.08  E-value=0.002  Score=46.34  Aligned_cols=18  Identities=22%  Similarity=0.473  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus         9 ~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.08  E-value=0.0021  Score=46.79  Aligned_cols=18  Identities=44%  Similarity=0.562  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        14 ~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999863

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.07  E-value=0.002  Score=46.88  Aligned_cols=18  Identities=22%  Similarity=0.492  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        13 ~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.04  E-value=0.0062  Score=56.23  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235         121 PQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus       121 p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      +.+|+|||. ..+++.....+++.+.+
T Consensus       661 ~~vl~lDEi-~~l~~~~~~~Ll~~l~~  686 (854)
T 1qvr_A          661 YSVILFDEI-EKAHPDVFNILLQILDD  686 (854)
T ss_dssp             SEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred             CeEEEEecc-cccCHHHHHHHHHHhcc
Confidence            469999999 45788777777777754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.03  E-value=0.0022  Score=48.82  Aligned_cols=17  Identities=35%  Similarity=0.417  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+.||||||+.+.|+.
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999964

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.02  E-value=0.0017  Score=48.16  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        29 ~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.00  E-value=0.0018  Score=47.90  Aligned_cols=19  Identities=42%  Similarity=0.552  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        29 ~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHHcCc
Confidence            5999999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.00  E-value=0.0019  Score=48.42  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++||||||+.+.|+..
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            489999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.99  E-value=0.0024  Score=46.66  Aligned_cols=18  Identities=28%  Similarity=0.409  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+-.
T Consensus         8 ~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            8 VGARGCGMTTVGRELARA   25 (173)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.99  E-value=0.0023  Score=46.99  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        10 ~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHhCC
Confidence            5999999999999998643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.99  E-value=0.0024  Score=47.95  Aligned_cols=19  Identities=21%  Similarity=0.212  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|+.||||||+.+.|+..+
T Consensus        10 ~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHTS
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            4999999999999998654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.98  E-value=0.0025  Score=47.33  Aligned_cols=17  Identities=35%  Similarity=0.446  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|++||||||+.+.|+-
T Consensus         9 ~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            9 LGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.98  E-value=0.012  Score=49.08  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=40.6

Q ss_pred             HHHHHHHHHh--hCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---HhC-CCEEEEEecCCcc-----
Q psy4235         109 KRLALAVQLL--TEPQILFCDEPTTGLD---S----------YSANNVVNLLKQL---ACE-SRIVICAIHQPTS-----  164 (197)
Q Consensus       109 qrv~ia~al~--~~p~llllDEPts~LD---~----------~~~~~i~~~l~~l---~~~-~~~iii~th~~~~-----  164 (197)
                      +-+.+++.++  .+++++++|..++-..   .          ...+.+.+.++.+   +++ +.+||++.|-...     
T Consensus       139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f  218 (366)
T 1xp8_A          139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY  218 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred             HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence            3445566665  5799999999986541   0          1123455566655   344 6677776664210     


Q ss_pred             ----------hHHhhcCeEEEEeC
Q psy4235         165 ----------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 ----------~~~~~~d~v~~l~~  178 (197)
                                .+...+|-++.+..
T Consensus       219 g~p~~~~gg~al~~~a~~rl~L~r  242 (366)
T 1xp8_A          219 GNPETTTGGRALKFYASVRLDVRK  242 (366)
T ss_dssp             -------CHHHHHHHCSEEEEEEE
T ss_pred             CCccccCCcchhhheeeEEEEEEe
Confidence                      03456787777764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.98  E-value=0.0019  Score=46.56  Aligned_cols=19  Identities=32%  Similarity=0.499  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus         9 ~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.96  E-value=0.0029  Score=47.64  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .|+.||||||+.+.|+..+.
T Consensus        10 ~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHHHh
Confidence            49999999999999987554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.95  E-value=0.002  Score=46.95  Aligned_cols=18  Identities=22%  Similarity=0.401  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        15 ~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.95  E-value=0.083  Score=45.18  Aligned_cols=20  Identities=35%  Similarity=0.514  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++|+||||++..|+..+.
T Consensus       106 vG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A          106 VGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHHHH
Confidence            49999999999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.94  E-value=0.0025  Score=45.84  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        12 ~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.94  E-value=0.0025  Score=46.03  Aligned_cols=18  Identities=44%  Similarity=0.578  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        13 ~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.93  E-value=0.0029  Score=47.66  Aligned_cols=19  Identities=21%  Similarity=0.410  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|++||||||+.+.|+..+
T Consensus         8 ~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            8 DGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999998743

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.93  E-value=0.0014  Score=52.58  Aligned_cols=26  Identities=12%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235         122 QILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus       122 ~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .++++||. ..+++..+..+++.+.+-
T Consensus       121 ~vl~lDEi-~~l~~~~~~~Ll~~le~~  146 (311)
T 4fcw_A          121 SVILFDAI-EKAHPDVFNILLQMLDDG  146 (311)
T ss_dssp             EEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred             eEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence            69999997 567888888888888764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.92  E-value=0.002  Score=47.44  Aligned_cols=19  Identities=32%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus         7 ~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHhCcC
Confidence            5999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.92  E-value=0.0026  Score=48.44  Aligned_cols=17  Identities=35%  Similarity=0.358  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.||||||+.+.|+.
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.92  E-value=0.0026  Score=47.12  Aligned_cols=19  Identities=26%  Similarity=0.499  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        13 ~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhCc
Confidence            5999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.92  E-value=0.0029  Score=46.08  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        12 ~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGG
T ss_pred             ECcCCCCHHHHHHHHHhCc
Confidence            5999999999999998643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.91  E-value=0.003  Score=46.70  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|+.|+|||||++.+.|...
T Consensus        20 vG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             ECSTTSSHHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHHhhcc
Confidence            59999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.89  E-value=0.0014  Score=48.13  Aligned_cols=17  Identities=47%  Similarity=0.624  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++|+|||||++.+.+
T Consensus        24 ~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEETTSSHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            59999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.88  E-value=0.002  Score=53.62  Aligned_cols=19  Identities=26%  Similarity=0.532  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.++|++.+
T Consensus        30 ~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           30 VGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            5999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.87  E-value=0.0027  Score=46.93  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++.
T Consensus        27 vG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.87  E-value=0.0027  Score=47.16  Aligned_cols=18  Identities=39%  Similarity=0.706  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        31 ~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHhcC
Confidence            599999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.87  E-value=0.0027  Score=46.69  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        17 ~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.86  E-value=0.0028  Score=45.49  Aligned_cols=18  Identities=39%  Similarity=0.442  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus         6 ~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.86  E-value=0.0022  Score=51.06  Aligned_cols=19  Identities=37%  Similarity=0.461  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.|.+.-
T Consensus        14 vG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           14 VGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EECTTSSHHHHHHHHSSSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999997643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.85  E-value=0.0025  Score=47.56  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus        15 ~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.85  E-value=0.0029  Score=45.99  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        21 ~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.85  E-value=0.0028  Score=48.07  Aligned_cols=19  Identities=37%  Similarity=0.588  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+++..
T Consensus        18 ~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.83  E-value=0.0025  Score=48.94  Aligned_cols=18  Identities=17%  Similarity=0.272  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++||||||+.+.|+-.
T Consensus        11 ~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A           11 SGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.83  E-value=0.0029  Score=46.27  Aligned_cols=18  Identities=22%  Similarity=0.374  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        24 ~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhhC
Confidence            599999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.82  E-value=0.018  Score=56.69  Aligned_cols=69  Identities=9%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hCCCEEEEEecCCc-------
Q psy4235         110 RLALAVQLL--TEPQILFCDEPTTGLD-S------------YSANNVVNLLKQL---A-CESRIVICAIHQPT-------  163 (197)
Q Consensus       110 rv~ia~al~--~~p~llllDEPts~LD-~------------~~~~~i~~~l~~l---~-~~~~~iii~th~~~-------  163 (197)
                      -...++.++  .+|+++++|+..+-.. .            ...+++.+.++++   + +.+.+||++.|-..       
T Consensus       798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G  877 (1706)
T 3cmw_A          798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  877 (1706)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred             HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence            334444333  5899999999887552 1            1233455556554   3 44888888877311       


Q ss_pred             --------chHHhhcCeEEEEeC
Q psy4235         164 --------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       164 --------~~~~~~~d~v~~l~~  178 (197)
                              ..+.+.+|-++.+..
T Consensus       878 dp~~p~gs~~Leq~ADvvl~L~R  900 (1706)
T 3cmw_A          878 NPETTTGGNALKFYASVRLDIRR  900 (1706)
T ss_dssp             CCEEESSCSHHHHHEEEEEEEEE
T ss_pred             CccccCCcchhhheeeEEEEEEe
Confidence                    135667788888854

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.003  Score=46.07  Aligned_cols=19  Identities=37%  Similarity=0.560  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        16 ~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999998643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.80  E-value=0.0026  Score=50.36  Aligned_cols=18  Identities=39%  Similarity=0.573  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|||||||++.++|.
T Consensus         7 vG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHCC
Confidence            599999999999999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.78  E-value=0.0032  Score=51.09  Aligned_cols=18  Identities=33%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.|.
T Consensus        13 vG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.77  E-value=0.0039  Score=46.26  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|+.||||||+.+.|+-.+
T Consensus         6 ~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.77  E-value=0.003  Score=52.85  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.|++.
T Consensus         7 VG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.76  E-value=0.004  Score=45.29  Aligned_cols=18  Identities=22%  Similarity=0.285  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus         6 ~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             ESCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.76  E-value=0.0033  Score=45.88  Aligned_cols=18  Identities=33%  Similarity=0.556  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        18 ~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHC
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.74  E-value=0.0029  Score=48.75  Aligned_cols=18  Identities=28%  Similarity=0.529  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus        13 ~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999843

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.73  E-value=0.0035  Score=46.16  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        24 ~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.73  E-value=0.0028  Score=46.08  Aligned_cols=18  Identities=22%  Similarity=0.398  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        20 ~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.72  E-value=0.0027  Score=47.70  Aligned_cols=18  Identities=33%  Similarity=0.505  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.++|.
T Consensus        29 vG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             ECSTTSSHHHHHHHTCCE
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            699999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.71  E-value=0.0059  Score=50.67  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=22.7

Q ss_pred             CCCCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q psy4235         101 SGLSGGQRKRLALAVQL---LT--EPQILFCDEPT  130 (197)
Q Consensus       101 ~~LSgGq~qrv~ia~al---~~--~p~llllDEPt  130 (197)
                      ..+|+|++||..++++|   ..  +++++++|||+
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            35899999999999999   76  89999999996

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.71  E-value=0.0037  Score=46.29  Aligned_cols=18  Identities=33%  Similarity=0.466  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus         8 ~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.70  E-value=0.0031  Score=47.13  Aligned_cols=18  Identities=28%  Similarity=0.423  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus        18 ~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.69  E-value=0.0038  Score=48.14  Aligned_cols=18  Identities=28%  Similarity=0.514  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+-.
T Consensus         6 ~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999743

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.69  E-value=0.0036  Score=46.39  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        22 ~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999998743

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.69  E-value=0.023  Score=51.65  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=20.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235         121 PQILFCDEPTTGLDSYSANNVVNLLKQ  147 (197)
Q Consensus       121 p~llllDEPts~LD~~~~~~i~~~l~~  147 (197)
                      +.+|+|||. ..+++..+..+++.+.+
T Consensus       580 ~~vl~lDEi-~~~~~~~~~~Ll~~le~  605 (758)
T 3pxi_A          580 YSVVLLDAI-EKAHPDVFNILLQVLED  605 (758)
T ss_dssp             SSEEEEECG-GGSCHHHHHHHHHHHHH
T ss_pred             CeEEEEeCc-cccCHHHHHHHHHHhcc
Confidence            459999998 45688888888888876

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.69  E-value=0.0036  Score=46.78  Aligned_cols=18  Identities=22%  Similarity=0.374  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        20 ~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.67  E-value=0.0037  Score=46.77  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHHcCC
Confidence            5999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.67  E-value=0.0039  Score=49.34  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.++|..
T Consensus        11 vG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5999999999999999853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.66  E-value=0.0039  Score=46.92  Aligned_cols=17  Identities=41%  Similarity=0.466  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+.||||||+.+.|+-
T Consensus        21 ~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.65  E-value=0.003  Score=46.36  Aligned_cols=18  Identities=28%  Similarity=0.578  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        16 ~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.65  E-value=0.0029  Score=46.70  Aligned_cols=19  Identities=37%  Similarity=0.560  Sum_probs=12.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .|++||||||+.+.|+..+
T Consensus        11 ~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             ECCC----CHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999997543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.65  E-value=0.0038  Score=46.22  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        28 vG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.65  E-value=0.0038  Score=45.76  Aligned_cols=18  Identities=22%  Similarity=0.466  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        24 ~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.64  E-value=0.0038  Score=47.17  Aligned_cols=18  Identities=22%  Similarity=0.121  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus        16 ~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            489999999999999753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.62  E-value=0.0042  Score=47.53  Aligned_cols=18  Identities=44%  Similarity=0.721  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus        10 ~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.61  E-value=0.0043  Score=46.72  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus        26 ~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.60  E-value=0.0041  Score=45.52  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        11 ~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999853

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.59  E-value=0.0035  Score=46.42  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+.||||||+.+.|+.
T Consensus        12 ~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999974

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.59  E-value=0.004  Score=46.40  Aligned_cols=18  Identities=28%  Similarity=0.602  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        32 vG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC-
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.57  E-value=0.0034  Score=46.34  Aligned_cols=18  Identities=39%  Similarity=0.516  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+.
T Consensus        13 ~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.57  E-value=0.0036  Score=49.10  Aligned_cols=19  Identities=16%  Similarity=0.368  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|||||||++.|+|..
T Consensus        28 vG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.57  E-value=0.0045  Score=46.27  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        14 ~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.56  E-value=0.0043  Score=45.89  Aligned_cols=18  Identities=28%  Similarity=0.287  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        26 ~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.56  E-value=0.0037  Score=49.87  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|..|||||||++.++|..
T Consensus         9 vG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999853

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.56  E-value=0.0035  Score=46.52  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        14 vG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCCcHHHHHHHHHcC
Confidence            599999999999999873

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.54  E-value=0.0046  Score=48.88  Aligned_cols=18  Identities=33%  Similarity=0.410  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+..
T Consensus        10 ~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.54  E-value=0.0044  Score=46.39  Aligned_cols=17  Identities=29%  Similarity=0.499  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++|+|||||++.++|
T Consensus        12 vG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            69999999999999986

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.52  E-value=0.0044  Score=46.00  Aligned_cols=19  Identities=26%  Similarity=0.553  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        27 ~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999998643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.51  E-value=0.0046  Score=47.47  Aligned_cols=18  Identities=11%  Similarity=0.399  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++.
T Consensus        35 vG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.51  E-value=0.0057  Score=44.67  Aligned_cols=19  Identities=32%  Similarity=0.711  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||++.++..+
T Consensus        49 ~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.50  E-value=0.0047  Score=49.46  Aligned_cols=24  Identities=21%  Similarity=0.119  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         139 NNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       139 ~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      .-+.++|+.++++|..+.++|...
T Consensus       191 ~g~~e~L~~L~~~g~~~~v~T~k~  214 (301)
T 1ltq_A          191 PMVVELSKMYALMGYQIVVVSGRE  214 (301)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             hHHHHHHHHHHHCCCeEEEEeCCC
Confidence            447788888888888888888765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0039  Score=46.41  Aligned_cols=19  Identities=16%  Similarity=0.475  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        29 vG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999998643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.49  E-value=0.03  Score=55.97  Aligned_cols=69  Identities=9%  Similarity=0.036  Sum_probs=42.9

Q ss_pred             HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCcc------
Q psy4235         110 RLALAVQLL--TEPQILFCDEPTTGLD-S------------YSANNVVNLLKQL---AC-ESRIVICAIHQPTS------  164 (197)
Q Consensus       110 rv~ia~al~--~~p~llllDEPts~LD-~------------~~~~~i~~~l~~l---~~-~~~~iii~th~~~~------  164 (197)
                      -+.+++.++  .+|+++++|.-.+-.. .            ...+.+.+.++.+   ++ .+.+||++.|-...      
T Consensus       449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g  528 (2050)
T 3cmu_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence            445556554  5799999999876542 1            1223455666666   34 47788887764211      


Q ss_pred             ---------hHHhhcCeEEEEeC
Q psy4235         165 ---------GVFEKFDTVSLLAH  178 (197)
Q Consensus       165 ---------~~~~~~d~v~~l~~  178 (197)
                               .+...+|-++.+..
T Consensus       529 ~p~~psGg~ale~~ADv~l~L~R  551 (2050)
T 3cmu_A          529 NPETTTGGNALKFYASVRLDIRR  551 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEE
T ss_pred             CCcCCCCcchhhhhCCEEEEEEe
Confidence                     25567888888765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.48  E-value=0.0047  Score=45.90  Aligned_cols=18  Identities=39%  Similarity=0.527  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        29 vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHhcC
Confidence            599999999999999875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.47  E-value=0.0048  Score=45.02  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        14 ~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.47  E-value=0.0048  Score=45.78  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++.
T Consensus        23 ~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           23 CGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             ECCTTSCHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.45  E-value=0.0039  Score=46.73  Aligned_cols=19  Identities=21%  Similarity=0.207  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        30 vG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSC
T ss_pred             ECCCCcCHHHHHHHHHhCC
Confidence            5999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.45  E-value=0.0042  Score=47.38  Aligned_cols=17  Identities=24%  Similarity=0.212  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+.||||||+.+.|+-
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.44  E-value=0.005  Score=45.87  Aligned_cols=18  Identities=22%  Similarity=0.517  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        34 ~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           34 FGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.44  E-value=0.0051  Score=49.93  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.|.|.
T Consensus        16 vG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            599999999999999985

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.44  E-value=0.0049  Score=46.57  Aligned_cols=18  Identities=28%  Similarity=0.187  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus        15 ~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999999853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.44  E-value=0.005  Score=45.63  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        28 ~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.42  E-value=0.005  Score=48.98  Aligned_cols=20  Identities=20%  Similarity=0.406  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|.+|+|||||+|.|.|...
T Consensus       105 vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          105 VGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             EESTTSSHHHHHHHHHTTCC
T ss_pred             eCCCCCCHHHHHHHHhcccc
Confidence            59999999999999998654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.41  E-value=0.0054  Score=47.99  Aligned_cols=17  Identities=35%  Similarity=0.503  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .||.||||||+.+.|+-
T Consensus        35 ~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.41  E-value=0.0052  Score=45.38  Aligned_cols=18  Identities=33%  Similarity=0.612  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        21 ~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.41  E-value=0.0034  Score=46.51  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        27 ~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGG
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.40  E-value=0.0021  Score=48.84  Aligned_cols=19  Identities=32%  Similarity=0.384  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.|+|..
T Consensus        35 ~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCS
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.39  E-value=0.0046  Score=46.41  Aligned_cols=18  Identities=28%  Similarity=0.558  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        31 ~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EESTTSSHHHHHHHHHC-
T ss_pred             ECcCCCCHHHHHHHHHhC
Confidence            599999999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.38  E-value=0.0045  Score=49.88  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|||||||++.|+|..
T Consensus        30 vG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           30 VGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EECSSSSHHHHHHHHHTSC
T ss_pred             EcCCCCCHHHHHHHHHCCC
Confidence            5999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.0043  Score=46.05  Aligned_cols=19  Identities=26%  Similarity=0.378  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        29 ~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EESTTSSHHHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHhcCC
Confidence            5999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.0047  Score=45.63  Aligned_cols=18  Identities=33%  Similarity=0.445  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        22 ~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.38  E-value=0.0057  Score=48.08  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||.++|+...
T Consensus        50 ~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             BCSSCSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHh
Confidence            4999999999999998643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.38  E-value=0.0043  Score=45.36  Aligned_cols=17  Identities=18%  Similarity=0.313  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        12 ~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHc
Confidence            59999999999999984

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.37  E-value=0.0058  Score=46.23  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        31 vG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSC
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.36  E-value=0.0053  Score=45.91  Aligned_cols=19  Identities=26%  Similarity=0.387  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+..
T Consensus        34 ~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCC
T ss_pred             ECcCCCCHHHHHHHHHhCC
Confidence            5999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.35  E-value=0.0055  Score=46.04  Aligned_cols=18  Identities=33%  Similarity=0.558  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        26 ~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.34  E-value=0.0046  Score=47.03  Aligned_cols=19  Identities=37%  Similarity=0.580  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+++..
T Consensus        36 ~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EECTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHh
Confidence            5899999999999998653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.33  E-value=0.0045  Score=46.79  Aligned_cols=18  Identities=28%  Similarity=0.541  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+.
T Consensus        32 vG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHHhC
Confidence            599999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.33  E-value=0.0061  Score=45.46  Aligned_cols=18  Identities=22%  Similarity=0.446  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        26 ~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ECSTTSSHHHHHHHHHC-
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.32  E-value=0.0046  Score=46.39  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        14 ~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EESTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.30  E-value=0.0043  Score=45.65  Aligned_cols=18  Identities=33%  Similarity=0.445  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        27 ~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEETTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            589999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.28  E-value=0.0065  Score=44.30  Aligned_cols=18  Identities=28%  Similarity=0.418  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|+.||||||+.+.|+-.
T Consensus        13 ~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.27  E-value=0.0052  Score=48.72  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.|.|..
T Consensus        45 vG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           45 MGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.27  E-value=0.0043  Score=45.26  Aligned_cols=18  Identities=17%  Similarity=0.372  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++-
T Consensus        13 vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             ECCGGGCHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.27  E-value=0.0053  Score=45.84  Aligned_cols=20  Identities=15%  Similarity=0.330  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++|+|||||++.+.+...
T Consensus        26 vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EESTTSSHHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHhcCC
Confidence            59999999999999988543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.26  E-value=0.0063  Score=45.13  Aligned_cols=18  Identities=28%  Similarity=0.505  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        27 vG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCCcHHHHHHHHHhC
Confidence            599999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.25  E-value=0.0075  Score=45.65  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=29.1

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      .+|.++++||.-. +|+.....+.+.+.+. ..+..+|+++++.
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~  166 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDP  166 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence            4678999999765 7887777777766543 2345677777654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.23  E-value=0.0063  Score=45.94  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+++..
T Consensus        13 vG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999998643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.21  E-value=0.0053  Score=46.26  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.+-.
T Consensus        31 vG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSS
T ss_pred             ECcCCCCHHHHHHHHhcCC
Confidence            5999999999999998743

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.19  E-value=0.021  Score=43.56  Aligned_cols=70  Identities=20%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         108 RKRLALAVQLL--TEPQILFCDEPTT--GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       108 ~qrv~ia~al~--~~p~llllDEPts--~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      +..+..++..+  .+.+++||||...  .++.....+++++|.+. -+...+|++.......+.+.||-|--|..
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~  179 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRP  179 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence            45555666666  5689999999976  34555566788888653 34679999999999999999999988865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.18  E-value=0.006  Score=46.34  Aligned_cols=18  Identities=33%  Similarity=0.578  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        40 vG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EECTTSSHHHHHHHHHC-
T ss_pred             ECcCCCCHHHHHHHHHcC
Confidence            599999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.18  E-value=0.0054  Score=46.46  Aligned_cols=18  Identities=39%  Similarity=0.516  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++.
T Consensus        34 vG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.16  E-value=0.006  Score=48.16  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.+.|..
T Consensus        42 vG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           42 LGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EECTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.12  E-value=0.0056  Score=48.80  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|..|+|||||++.|+|..
T Consensus        32 vG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           32 VGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSC
T ss_pred             EeCCCCCHHHHHHHHHCCC
Confidence            5899999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.11  E-value=0.0086  Score=46.91  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .|++||||||+.+.|+..
T Consensus        28 ~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.10  E-value=0.0078  Score=45.61  Aligned_cols=17  Identities=29%  Similarity=0.462  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+.||||||+.+.|+-
T Consensus        18 tG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999974

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.08  E-value=0.0044  Score=45.39  Aligned_cols=18  Identities=33%  Similarity=0.549  Sum_probs=5.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        14 ~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             ECCCCC------------
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.08  E-value=0.0039  Score=50.35  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=12.4

Q ss_pred             CCCCCcHHHHHHHHhcC
Q psy4235           2 SPSGAGKTTLLAALNKR   18 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~   18 (197)
                      |++||||||+.+.|+..
T Consensus        12 G~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A           12 GSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCC---CCTHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.05  E-value=0.0066  Score=44.32  Aligned_cols=19  Identities=26%  Similarity=0.615  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||++.++...
T Consensus        49 ~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             ESCGGGCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.03  E-value=0.0042  Score=46.37  Aligned_cols=18  Identities=17%  Similarity=0.482  Sum_probs=0.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        26 ~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSK   43 (208)
T ss_dssp             C-----------------
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.03  E-value=0.0062  Score=45.44  Aligned_cols=18  Identities=39%  Similarity=0.442  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        35 ~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EESTTSSHHHHHHHHCSS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.99  E-value=0.0066  Score=45.51  Aligned_cols=18  Identities=33%  Similarity=0.512  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        31 vG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999999874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.96  E-value=0.0074  Score=46.16  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus        11 ~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999999753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.95  E-value=0.0091  Score=46.18  Aligned_cols=18  Identities=44%  Similarity=0.661  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.||||||+.+.|+-.
T Consensus        22 ~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999854

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.94  E-value=0.0095  Score=45.64  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.|.
T Consensus        43 vG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.91  E-value=0.0074  Score=44.74  Aligned_cols=18  Identities=28%  Similarity=0.422  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        24 ~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.84  E-value=0.059  Score=53.18  Aligned_cols=67  Identities=7%  Similarity=0.025  Sum_probs=41.7

Q ss_pred             HHHHHHh--hCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEecCCc---------
Q psy4235         112 ALAVQLL--TEPQILFCDEPTTGLDS-------------YSANNVVNLLKQL----ACESRIVICAIHQPT---------  163 (197)
Q Consensus       112 ~ia~al~--~~p~llllDEPts~LD~-------------~~~~~i~~~l~~l----~~~~~~iii~th~~~---------  163 (197)
                      .+++.++  .+|+++++|..++=...             ...+.+.+.++.+    ++.+.++|++.|-..         
T Consensus       451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~  530 (1706)
T 3cmw_A          451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP  530 (1706)
T ss_dssp             HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred             HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence            4445444  57999999998876541             1223345555555    344888888877421         


Q ss_pred             ------chHHhhcCeEEEEeC
Q psy4235         164 ------SGVFEKFDTVSLLAH  178 (197)
Q Consensus       164 ------~~~~~~~d~v~~l~~  178 (197)
                            ..+...+|-++.+..
T Consensus       531 ~~p~gg~ale~~ADv~L~L~R  551 (1706)
T 3cmw_A          531 ETTTGGNALKFYASVRLDIRR  551 (1706)
T ss_dssp             EEESSCSHHHHHEEEEEEEEE
T ss_pred             ccCCCCcceeeeCCEEEEEEe
Confidence                  135577888877765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.83  E-value=0.0039  Score=47.27  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+++.
T Consensus        17 vG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.81  E-value=0.0084  Score=51.31  Aligned_cols=18  Identities=17%  Similarity=0.399  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.|+|.
T Consensus        29 vG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           29 VGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             ECSSSSSHHHHHHHHEEE
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            599999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.81  E-value=0.0097  Score=47.66  Aligned_cols=16  Identities=31%  Similarity=0.511  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|++||||||+.+.|+
T Consensus        81 ~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999999997

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.78  E-value=0.012  Score=45.25  Aligned_cols=19  Identities=42%  Similarity=0.657  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|+-.+.
T Consensus        13 G~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A           13 GPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence            9999999999999976553

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.01  Score=45.29  Aligned_cols=18  Identities=39%  Similarity=0.693  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        19 ~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHC
T ss_pred             ECcCCCCHHHHHHHHhcC
Confidence            599999999999999874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.73  E-value=0.01  Score=45.07  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        33 vG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHhcC
Confidence            599999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.72  E-value=0.011  Score=48.56  Aligned_cols=19  Identities=47%  Similarity=0.683  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|||||||.+.|+..+
T Consensus        11 ~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            5999999999999998643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.71  E-value=0.01  Score=50.27  Aligned_cols=17  Identities=29%  Similarity=0.382  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++||||||+.+.|+.
T Consensus       264 ~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             ESCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999974

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.67  E-value=0.0092  Score=44.80  Aligned_cols=18  Identities=17%  Similarity=0.361  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        35 vG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EECTTSSHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHhhC
Confidence            599999999999999864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.63  E-value=0.0061  Score=45.00  Aligned_cols=17  Identities=35%  Similarity=0.493  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        28 ~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEETTSSHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            58999999999999965

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.62  E-value=0.014  Score=43.56  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      ++.++++||. ..+++.....+.+.+.... .+..+|+++...
T Consensus       102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~  142 (226)
T 2chg_A          102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV  142 (226)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred             CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence            6889999995 5567777777777776642 244556666543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.60  E-value=0.0095  Score=45.38  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.++...
T Consensus        44 vG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHh
Confidence            5899999999999998653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.60  E-value=0.013  Score=44.97  Aligned_cols=18  Identities=44%  Similarity=0.647  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||+|..+.|+-.
T Consensus         6 ~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999843

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.57  E-value=0.0098  Score=44.76  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        36 vG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHh
Confidence            59999999999999875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.55  E-value=0.015  Score=44.38  Aligned_cols=19  Identities=37%  Similarity=0.716  Sum_probs=16.8

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+-||||||+++.|+-.+.
T Consensus         9 G~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            9 GPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHHHHHH
Confidence            8999999999999987654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.54  E-value=0.013  Score=48.53  Aligned_cols=19  Identities=32%  Similarity=0.588  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|||||||.+.|+..+
T Consensus        13 ~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCcCcHHHHHHHHHHHc
Confidence            4999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.53  E-value=0.011  Score=46.03  Aligned_cols=19  Identities=42%  Similarity=0.511  Sum_probs=13.6

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|+..+.
T Consensus        32 G~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           32 GIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCC---CHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999986543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.49  E-value=0.016  Score=41.35  Aligned_cols=41  Identities=17%  Similarity=0.088  Sum_probs=29.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      +..+|++||. ..|++..+..+++.+... .....+|.+|..+
T Consensus        76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~  116 (145)
T 3n70_A           76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS  116 (145)
T ss_dssp             TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred             CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence            4468999998 468888888888888432 2245677777654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.48  E-value=0.013  Score=45.45  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=16.5

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+.||||||+.+.|+-.+.
T Consensus         9 G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            9 GNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             ECTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCHHHHHHHHHHHcC
Confidence            8999999999999986553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.45  E-value=0.014  Score=44.27  Aligned_cols=19  Identities=26%  Similarity=0.478  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|+..+
T Consensus         9 ~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            9 DGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhc
Confidence            4999999999999998643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.38  E-value=0.011  Score=44.38  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        15 ~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.36  E-value=0.016  Score=44.84  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||+|..+.|+-.
T Consensus        35 lGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           35 LGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             ECCTTCCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999843

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.34  E-value=0.018  Score=43.66  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=16.5

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+-||||||.++.|+-.+.
T Consensus         7 G~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            7 GIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             CSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8999999999999986554

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.34  E-value=0.014  Score=45.65  Aligned_cols=18  Identities=28%  Similarity=0.464  Sum_probs=16.2

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |++||||||+++.|+..+
T Consensus        34 G~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           34 GLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             ESTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            899999999999998654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.36  E-value=0.0076  Score=45.18  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        36 ~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           36 VGDGAVGKTCLLISYTT   52 (204)
Confidence            69999999999998875

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.28  E-value=0.015  Score=44.70  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|...+.
T Consensus        10 G~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A           10 GLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             ECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8999999999999986553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.25  E-value=0.019  Score=45.31  Aligned_cols=18  Identities=33%  Similarity=0.518  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .||.|+|||||.+.++..
T Consensus        70 ~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.19  E-value=0.014  Score=46.85  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|.+|+|||||+|.|.|...
T Consensus       126 vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCC
T ss_pred             EecCCCchHHHHHHHhcCce
Confidence            58999999999999998653

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.15  E-value=0.016  Score=48.92  Aligned_cols=19  Identities=37%  Similarity=0.669  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|+|||||++.|+...
T Consensus       180 vG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          180 VAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             ECCSSSSHHHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHHHH
Confidence            5999999999999998764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.12  E-value=0.094  Score=44.78  Aligned_cols=16  Identities=25%  Similarity=0.287  Sum_probs=13.9

Q ss_pred             CCCCCcHHHHHHHHhc
Q psy4235           2 SPSGAGKTTLLAALNK   17 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g   17 (197)
                      |++|+|||||+--++.
T Consensus       204 G~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          204 ARPSMGKTAFALKQAK  219 (444)
T ss_dssp             ECSSSSHHHHHHHHHH
T ss_pred             eCCCCChHHHHHHHHH
Confidence            8999999999877764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.10  E-value=0.021  Score=44.30  Aligned_cols=19  Identities=32%  Similarity=0.354  Sum_probs=16.5

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|+..+.
T Consensus        28 G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           28 GIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            8999999999999986543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.08  E-value=0.019  Score=47.08  Aligned_cols=18  Identities=39%  Similarity=0.588  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .||+|||||||.+.|+-.
T Consensus         9 ~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHT
T ss_pred             ECCCcCCHHHHHHHHHHh
Confidence            499999999999999854

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.04  E-value=0.012  Score=46.36  Aligned_cols=18  Identities=28%  Similarity=0.394  Sum_probs=16.1

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+.||||||+.+.|+-.+
T Consensus        31 G~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           31 GNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CSTTSSHHHHHTTTGGGC
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            899999999999998654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.00  E-value=0.019  Score=46.21  Aligned_cols=18  Identities=17%  Similarity=0.294  Sum_probs=16.2

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      ||.|+|||+|.++|+..+
T Consensus        43 GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           43 GGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             ECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.98  E-value=0.02  Score=46.79  Aligned_cols=18  Identities=44%  Similarity=0.656  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||+|||||||...|+-.
T Consensus        16 ~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           16 MGPTASGKTALAIELRKI   33 (316)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHh
Confidence            499999999999999854

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.98  E-value=0.019  Score=44.03  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||+|+|||||...|+..
T Consensus        40 ~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ECCCTTTTHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998743

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.95  E-value=0.024  Score=45.13  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+|||||.+.++..+.
T Consensus        56 ~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            49999999999999986553

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=93.94  E-value=0.017  Score=48.71  Aligned_cols=41  Identities=12%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy4235          82 TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFC  126 (197)
Q Consensus        82 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llll  126 (197)
                      .+.++++.++....    ..++|..+...+.-...+...|-++++
T Consensus       181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            45566666665432    347899998888777667778988887

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.93  E-value=0.02  Score=44.27  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=17.3

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+.||||||+.+.|.-.+.
T Consensus        12 G~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A           12 GLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             ECSSSSHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHhc
Confidence            8999999999999987665

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.90  E-value=0.029  Score=47.97  Aligned_cols=20  Identities=35%  Similarity=0.611  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+|||||.++|+....
T Consensus        56 ~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           56 WGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             ECSTTSSHHHHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHHHHhC
Confidence            39999999999999997654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.90  E-value=0.024  Score=46.29  Aligned_cols=17  Identities=35%  Similarity=0.374  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|+||+|||||...+.+
T Consensus       150 ~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          150 TGDSGIGKSETALELIK  166 (314)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHh
Confidence            48999999999999986

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=93.89  E-value=0.02  Score=47.75  Aligned_cols=18  Identities=17%  Similarity=0.375  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||+|.|.|.
T Consensus       168 vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          168 VGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCchHHHHHHHHhh
Confidence            599999999999999986

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.89  E-value=0.02  Score=42.87  Aligned_cols=16  Identities=31%  Similarity=0.324  Sum_probs=14.0

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|+||+|||||...+.
T Consensus        22 ~G~SGaGKStlal~L~   37 (181)
T 3tqf_A           22 TGEANIGKSELSLALI   37 (181)
T ss_dssp             EESSSSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            4899999999998775

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.84  E-value=0.024  Score=46.25  Aligned_cols=19  Identities=32%  Similarity=0.588  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||.+.++...
T Consensus        51 ~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             ESSSSSCHHHHHHHHHHHT
T ss_pred             ECCCCccHHHHHHHHHHHc
Confidence            3999999999999999754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.83  E-value=0.023  Score=46.01  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus         9 vG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            599999999999998765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.75  E-value=0.025  Score=45.87  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||.++++...
T Consensus        57 ~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           57 YGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             ECSSSSCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHH
Confidence            3999999999999998643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=93.70  E-value=0.02  Score=48.61  Aligned_cols=19  Identities=16%  Similarity=0.344  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|+|||||++.|+|..
T Consensus         9 vG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            9 VGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             ECSTTSSHHHHHHHHEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999853

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.64  E-value=0.028  Score=45.58  Aligned_cols=51  Identities=12%  Similarity=0.132  Sum_probs=28.9

Q ss_pred             hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcchHHh
Q psy4235         118 LTEPQILFCDEPT-TGLDSYSANNVVN-LLKQLACESRIVICAIHQPTSGVFE  168 (197)
Q Consensus       118 ~~~p~llllDEPt-s~LD~~~~~~i~~-~l~~l~~~~~~iii~th~~~~~~~~  168 (197)
                      +.++++|++||.- ..++...+..++. ++.....++..+|++|+.....+..
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~  264 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER  264 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence            4578999999983 3445444544544 6655434456788888865544443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.63  E-value=0.024  Score=45.30  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||||.+.++..+
T Consensus        73 ~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           73 TGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             EECTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999988654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.026  Score=48.14  Aligned_cols=19  Identities=37%  Similarity=0.550  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      ||.|+|||+|.++|++...
T Consensus       222 GPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          222 GPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             SCTTSSHHHHHHHHHHHHT
T ss_pred             CcCCCCHHHHHHHHHHHhC
Confidence            9999999999999997543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.027  Score=48.05  Aligned_cols=20  Identities=40%  Similarity=0.670  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+|||+|.++|++...
T Consensus       212 ~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          212 YGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             ESCTTTTHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            39999999999999997543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.57  E-value=0.015  Score=47.92  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|..|+|||||++.|+|..
T Consensus        37 vG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           37 VGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             ECBTTSSHHHHHHTTTTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=93.53  E-value=0.014  Score=44.31  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh
Q psy4235         110 RLALAVQLLTEPQILFCDEPTT-----GLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus       110 rv~ia~al~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~  150 (197)
                      .-.|++.+..+|.+.+.++|+.     .+|+...+++...+++.+.
T Consensus       166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
T 3gj0_A          166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQT  211 (221)
T ss_dssp             HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhc
Confidence            3467788888998888887765     7888888888888777543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.50  E-value=0.031  Score=46.09  Aligned_cols=19  Identities=37%  Similarity=0.704  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+||||+.++|+...
T Consensus        57 ~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           57 IGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.45  E-value=0.031  Score=45.29  Aligned_cols=19  Identities=37%  Similarity=0.583  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||.+.|+...
T Consensus        61 ~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           61 SGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECcCCCCHHHHHHHHHHHh
Confidence            4999999999999998654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.44  E-value=0.029  Score=47.90  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+|||+|.++|++...
T Consensus       221 ~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          221 YGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             ESCTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHHhC
Confidence            39999999999999997543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=93.43  E-value=0.022  Score=49.04  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.++|.
T Consensus       230 vG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          230 VGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHhCC
Confidence            599999999999999874

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=93.40  E-value=0.046  Score=45.87  Aligned_cols=20  Identities=30%  Similarity=0.323  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|+.|+|||||++.|+|...
T Consensus        14 vG~~~~GKSTLi~~L~~~~~   33 (403)
T 3sjy_A           14 VGHVDHGKTTLVQAITGIWT   33 (403)
T ss_dssp             ECSTTSSHHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHhCccc
Confidence            59999999999999998543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.38  E-value=0.03  Score=47.35  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      ||.|+|||+|.+++++...
T Consensus       189 GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          189 GPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             SCSSSSHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHhhC
Confidence            9999999999999997543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.38  E-value=0.029  Score=46.35  Aligned_cols=18  Identities=33%  Similarity=0.547  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.|||||||...|+-.
T Consensus        46 ~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999854

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.36  E-value=0.0045  Score=46.30  Aligned_cols=18  Identities=33%  Similarity=0.556  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+.
T Consensus        39 vG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           39 IGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             ECCTTSCCTTTTTSSBCC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-30
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-27
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	5e-27
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-25
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-24
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	6e-24
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-23
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-23
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	5e-23
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-22
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-22
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	8e-22
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-21
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-21
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-20
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-19
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-18
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-18
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-17
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-17
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-09
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	4e-08
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-07
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	4e-05

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-TVMSRISGYVAQQDFLIEELTV 58
           PSG GKTT L  +     GL +   G I      ++      R    V Q   +   +TV
Sbjct: 40  PSGCGKTTTLRMIA----GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
            E++ F  K+   ++    E++K +    E L I        + LSGGQR+R+A+A  ++
Sbjct: 96  YENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV 152

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLA 177
            EP +L  DEP + LD+     +   +K+L  + ++  I   H          D ++++ 
Sbjct: 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMN 211

Query: 178 HGGLLAYHGQVSKVLKH 194
            G LL   G  ++V   
Sbjct: 212 RGQLLQ-IGSPTEVYLR 227

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  101 bits (253), Expect = 2e-27
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-------GYVAQQD 50
           M PSG+GK+T+L  +      L +   GE+ ++    +      ++       G+V QQ 
Sbjct: 37  MGPSGSGKSTMLNIIG----CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRK 109
            LI  LT LE+++           +  E  K     ++   +  R    + + LSGGQ++
Sbjct: 93  NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152

Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFE 168
           R+A+A  L   P I+  D+PT  LDS +   ++ LLK+L  E    V+   H     V  
Sbjct: 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVAR 210

Query: 169 KFDTVSLLAHG 179
             + +  L  G
Sbjct: 211 FGERIIYLKDG 221

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  100 bits (250), Expect = 5e-27
 Identities = 46/199 (23%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISGYVAQQDFLIEELT 57
           P+GAGKTT L  ++     L++   G + + G         + ++  Y+ ++      + 
Sbjct: 36  PNGAGKTTTLRIIS----TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
            +E+L+F+A       ++  E+ + + R  E  G+  + + ++S  S G  ++L +A  L
Sbjct: 92  GIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 148

Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
           +  P++   DEPT+GLD  +A  V  +LKQ + E   ++         V    D ++L+ 
Sbjct: 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV-SSHNMLEVEFLCDRIALIH 207

Query: 178 HGGLLAYHGQVSKVLKHFA 196
           +G ++   G V ++ + + 
Sbjct: 208 NGTIVE-TGTVEELKERYK 225

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 96.6 bits (240), Expect = 3e-25
 Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 22/198 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRI----SGYVAQQDFLIEE 55
           P+G+GK+TL+  +     G ++   G +      I+    + +         Q    ++E
Sbjct: 38  PNGSGKSTLINVIT----GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93

Query: 56  LTVLEHLQFMAKLTMDRRTTWL----------ELNKTITRVMENLGINHRRQVQISGLSG 105
           +TVLE+L        +     L          E+ +   +++E L ++H    +   LSG
Sbjct: 94  MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 153

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
           GQ K + +   L+T P+++  DEP  G+    A+++ N + +L  +    +   H+    
Sbjct: 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI- 212

Query: 166 VFEKFDTVSLLAHGGLLA 183
           V    D + ++ +G ++A
Sbjct: 213 VLNYIDHLYVMFNGQIIA 230

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 93.8 bits (233), Expect = 2e-24
 Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 22/202 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
           P+GAGK+TLLA +     G  +G I   G P+   S T ++    Y++QQ        V 
Sbjct: 33  PNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL- 118
            +L                       V   L ++ +     + LSGG+ +R+ LA  +L 
Sbjct: 91  HYLTLHQHDKTRTELLN--------DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142

Query: 119 ------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
                    Q+L  DEP   LD    + +  +L  L  +   ++ + H            
Sbjct: 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH-TLRHAHR 201

Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
             LL  G +LA  G+  +VL  
Sbjct: 202 AWLLKGGKMLA-SGRREEVLTP 222

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 91.5 bits (227), Expect = 6e-24
 Identities = 40/159 (25%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
           P+G GKTTLL  ++  +K  ++GEI+ NG PI++  +     ++ ++  +  +++V ++L
Sbjct: 35  PNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYL 91

Query: 63  QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
           + +A L   +          I   +E++ +   ++ ++  LS G  +R+ LA  LL   +
Sbjct: 92  KAVASLYGVKVNKN-----EIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNAE 145

Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
           I   D+P   +D  S + V+  + ++  E  IVI +  +
Sbjct: 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLE 60
            SG GK+TL+  +  R   +  G+IL++G  I   +   +   +   QQD ++   TV E
Sbjct: 52  MSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 110

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLL 118
           ++        D               + NL  G +     +   LSGGQ++RL++A   L
Sbjct: 111 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
             P IL  DE T+ LD  S + +   L  L+ + R  +   H+         D + ++ +
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRL--STITHADKIVVIEN 227

Query: 179 G 179
           G
Sbjct: 228 G 228

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 90.7 bits (225), Expect = 3e-23
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 11/200 (5%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIE 54
           +  SGAGK+TL+  +N   +   +G +L++G  ++       T   R  G + Q   L+ 
Sbjct: 37  IGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95

Query: 55  ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
             TV  ++    +L     T   E+ + +T ++  +G+  +     S LSGGQ++R+A+A
Sbjct: 96  SRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L + P++L CDE T+ LD  +  +++ LLK +     + I  I      V    D V+
Sbjct: 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 212

Query: 175 LLAHGGLLAYHGQVSKVLKH 194
           ++++G L+     VS+V  H
Sbjct: 213 VISNGELIE-QDTVSEVFSH 231

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.1 bits (226), Expect = 5e-23
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 21/186 (11%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
            +G+GKT+LL  +     G ++   G I  +G         R+  + +Q  +++   T+ 
Sbjct: 70  STGSGKTSLLMLIL----GELEASEGIIKHSG---------RV-SFCSQFSWIMPG-TIK 114

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
           E++ F       R  + ++  +    + +     N         LSGGQR R++LA  + 
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
            +  +   D P   LD ++   V          ++  I    +       K D + +L  
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ 232

Query: 179 GGLLAY 184
           G    Y
Sbjct: 233 GSSYFY 238

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 89.2 bits (221), Expect = 1e-22
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-GYVAQQDFLIEEL 56
           + PSG GK+TLL  +     GL     G++ +    ++ T  +    G V Q   L   L
Sbjct: 32  VGPSGCGKSTLLRMIA----GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
           +V E++ F  KL   ++     +N+ + +V E L + H    +   LSGGQR+R+A+   
Sbjct: 88  SVAENMSFGLKLAGAKKE---VINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 144

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           L+ EP +   DEP + LD+     +   + +L       +  +           D + +L
Sbjct: 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 204

Query: 177 AHGGLLAYHGQVSKVLKH 194
             G +    G+  ++  +
Sbjct: 205 DAGRVAQ-VGKPLELYHY 221

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 9/184 (4%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQDFLIEELT 57
           +  SG+GK+T+ + +  R   + +G IL++G  +    ++        V+Q   L  +  
Sbjct: 47  VGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 105

Query: 58  VLEHLQFMAKLTMDRRTTWLELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAV 115
                    +     +             +  +  G++         LSGGQR+R+A+A 
Sbjct: 106 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
            LL +  IL  DE T+ LD+ S   +   L +L  ++R  +   H+      E+ D + +
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEQADEIVV 222

Query: 176 LAHG 179
           +  G
Sbjct: 223 VEDG 226

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 86.9 bits (215), Expect = 8e-22
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT----VMSRISGYVAQQDFLIEE 55
            +GAGKTT L+A+     GLV+   G+I+ NG  I+      +       V +   +  E
Sbjct: 40  ANGAGKTTTLSAIA----GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95

Query: 56  LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALA 114
           LTV E+L   A    D+      + + +  +      +  R +     LSGG+++ LA+ 
Sbjct: 96  LTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
             L++ P++L  DEP+ GL     + V  +++++  E   ++        G  +      
Sbjct: 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGY 210

Query: 175 LLAHGGLLAYHGQVSKVLKH 194
           +L  G ++   G+ S++L +
Sbjct: 211 VLETGQIVL-EGKASELLDN 229

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----------------RTVMSRISGYV 46
            SG+GK+T L  +N  ++   +G I++NG  I+                  ++      V
Sbjct: 36  SSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 94

Query: 47  AQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSG 105
            Q   L   +TVLE++            +  +  +   + +  +GI+ R Q +    LSG
Sbjct: 95  FQHFNLWSHMTVLENVMEA--PIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 152

Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
           GQ++R+++A  L  EP +L  DEPT+ LD      V+ +++QLA E + ++   H+    
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF- 211

Query: 166 VFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194
                  V  L  G +    G   +V  +
Sbjct: 212 ARHVSSHVIFLHQGKIEE-EGDPEQVFGN 239

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 9/196 (4%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVL 59
            SG+GK+TL   +  R      G++L++G  ++      + R  G V Q + L+    + 
Sbjct: 37  RSGSGKSTLTKLIQ-RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID 95

Query: 60  EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
                   +++++     +L      + E   G N     Q +GLSGGQR+R+A+A  L+
Sbjct: 96  NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 155

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
             P+IL  DE T+ LD  S + ++  + ++  + R VI   H+      +  D + ++  
Sbjct: 156 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRL--STVKNADRIIVMEK 212

Query: 179 GGLLAYHGQVSKVLKH 194
           G ++   G+  ++L  
Sbjct: 213 GKIVEQ-GKHKELLSE 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 20/205 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQD 50
           + PSG GKTT L  +     GL +   G+I +    ++            R    V Q  
Sbjct: 35  LGPSGCGKTTTLRMIA----GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90

Query: 51  FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
            L   +TV +++ F  KL   R+    E+++ +  V E LG+      +   LSGGQR+R
Sbjct: 91  ALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147

Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEK 169
           +AL   ++ +PQ+   DEP + LD+     +   LK+L  +  +  I   H         
Sbjct: 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE-AMTM 206

Query: 170 FDTVSLLAHGGLLAYHGQVSKVLKH 194
            D ++++  G L    G   +V   
Sbjct: 207 GDRIAVMNRGVLQQV-GSPDEVYDK 230

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 80.3 bits (198), Expect = 3e-19
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
           PSG GK+T+ + L  R      GEI ++G PI         S+I G+V+Q   ++   T+
Sbjct: 36  PSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQDSAIMA-GTI 92

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMEN---LGINHRRQVQISGLSGGQRKRLALAV 115
            E+L +  +        W  L+    R         +N     +   +SGGQR+RLA+A 
Sbjct: 93  RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152

Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
             L  P+IL  DE T  LDS S + V   L  L  + R  +   H+         D +  
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYF 209

Query: 176 LAHGGLLA 183
           +  G +  
Sbjct: 210 IEKGQITG 217

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSR-ISGYVAQQDFLIEEL 56
           + P+GAGKT  L  +     G      G ILL+G  ++     +    +V Q   L   +
Sbjct: 32  LGPTGAGKTLFLELIA----GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87

Query: 57  TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
            V ++L+F  ++   +        K +     +L I H        LSGG+++R+ALA  
Sbjct: 88  NVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
           L+T P+IL  DEP + LD  +  N   +L  L  ++++ +  I    +      D ++++
Sbjct: 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201

Query: 177 AHGGLLAYHGQVSKVLKH 194
             G L+   G+  ++ + 
Sbjct: 202 MDGKLIQV-GKPEEIFEK 218

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVL 59
           P+G+GK+T+ A L   +     G++LL+G P+       + R    V Q+  +    ++ 
Sbjct: 48  PNGSGKSTVAALLQ-NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQ 105

Query: 60  EHLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQ 116
           E++ +                K+     +  L  G +       S LSGGQR+ +ALA  
Sbjct: 106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165

Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSL 175
           L+ +P +L  D+ T+ LD+ S   V  LL +      R V+         + E+ D +  
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILF 223

Query: 176 LAHG 179
           L  G
Sbjct: 224 LEGG 227

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 75.8 bits (186), Expect = 1e-17
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 14/196 (7%)

Query: 3   PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-GYVAQQDFLIEELTV 58
           P+GAGK+  L  +     G+V+   GE+ LNG  I+     R   G+V Q   L   L+V
Sbjct: 32  PTGAGKSVFLELIA----GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
             ++ +       R    +E ++ +  + E LGI H    + + LSGG+R+R+ALA  L+
Sbjct: 88  YRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV 142

Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
            +P++L  DEP + +D  +   ++  L+ +  E  + I  +           D V+++ +
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202

Query: 179 GGLLAYHGQVSKVLKH 194
           G ++   G++ ++   
Sbjct: 203 GRIVE-KGKLKELFSA 217

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 74.7 bits (183), Expect = 3e-17
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 19/204 (9%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT------VMSRISGYVAQQDF 51
           + PSGAGKTT +  +     GL     GE+  +   ++           R  G V Q   
Sbjct: 37  LGPSGAGKTTFMRIIA----GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92

Query: 52  LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
           L   LT  E++ F        +     + K +  V + L I+H        LSG Q++R+
Sbjct: 93  LYPNLTAFENIAFPLTNMKMSKEE---IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149

Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKF 170
           ALA  L+ +P +L  DEP + LD+   ++   L+K++     + ++   H P   +F   
Sbjct: 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIA 208

Query: 171 DTVSLLAHGGLLAYHGQVSKVLKH 194
           D V +L  G L+   G+   +  +
Sbjct: 209 DRVGVLVKGKLVQ-VGKPEDLYDN 231

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 21/141 (14%)

Query: 59  LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL----A 114
           +E     A LT++                       +R   +  LSGG++   AL    A
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATP-----PLKRFKDMEYLSGGEKTVAALALLFA 348

Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT-- 172
           +           DE    LD  +   +   +++        I    +    +FEK D   
Sbjct: 349 INSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406

Query: 173 -VSLLAHGGLLAYHGQVSKVL 192
            V               SK++
Sbjct: 407 GVYRQQQEN-------SSKII 420

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 20/182 (10%), Positives = 39/182 (21%), Gaps = 29/182 (15%)

Query: 1   MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
               G GKTTL+  + +R+                     R      +  F I      +
Sbjct: 6   TGEPGVGKTTLVKKIVERLG-KRAIGFWTEEV--------RDPETKKRTGFRIITTEGKK 56

Query: 61  HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
            +      T  +      +N                               A        
Sbjct: 57  KIFSSKFFTSKKLVGSYGVNVQYFE-----------------ELAIPILERAYREAKKDR 99

Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
            +++  DE               + + +   +  V+  I      V      +  L    
Sbjct: 100 RKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV 156

Query: 181 LL 182
           L+
Sbjct: 157 LI 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.77
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.57
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.72
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.61
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.5
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.33
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.26
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.2
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.16
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.06
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.04
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.02
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.96
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.92
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.87
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.84
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.83
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.83
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.81
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.79
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.79
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.77
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.76
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.73
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.73
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.69
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.68
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.68
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.67
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.66
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.64
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.64
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.64
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.62
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.61
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.55
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.53
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.52
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.51
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.49
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.48
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.43
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.41
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.41
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.39
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.38
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.34
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.33
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.33
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.33
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.32
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.3
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.29
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.29
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.27
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.24
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.23
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.22
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.17
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.16
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.13
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.08
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.05
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.04
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.03
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.03
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.01
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.0
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.89
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.89
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.8
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.8
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.76
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.71
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.65
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.64
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.62
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.61
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.38
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.37
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.37
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.35
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.35
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.3
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.29
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.29
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.29
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.23
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.21
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.21
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1okkd2	207	GTPase domain of the signal recognition particle r	95.13
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.08
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.06
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.06
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.05
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.99
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.97
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.92
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.88
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.83
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.79
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.75
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.75
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.75
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.74
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.71
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.69
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.57
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.56
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.51
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.49
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.47
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.46
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.41
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.41
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.41
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.35
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.35
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.3
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.29
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.27
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.22
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.12
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.11
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.08
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.06
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.04
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.03
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.99
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.91
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.56
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.5
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.36
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.34
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.26
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.0
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.88
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.88
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.79
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.52
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.48
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.4
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.23
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.2
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	92.02
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.01
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.89
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.84
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	91.76
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.39
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.37
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.31
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.55
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.55
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.47
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.27
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	90.02
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.97
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.97
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.83
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.79
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.66
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.46
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.29
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.12
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.89
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.51
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.24
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.83
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.18
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.98
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.5
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.47
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.39
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	84.02
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.29
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	81.97
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	81.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.92
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	80.38

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.6e-61  Score=379.46  Aligned_cols=188  Identities=26%  Similarity=0.331  Sum_probs=164.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+...+.   .+..+.
T Consensus        38 iGpsGaGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~~~  113 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEI  113 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHH
T ss_pred             ECCCCChHHHHHHHHHcCCC-CCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcC---CCHHHH
Confidence            69999999999999999998 7999999999998653 345679999999999999999999998765432   345567


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+||||.++.+++++|++++++ |.|+|++
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~v  193 (239)
T d1v43a3         114 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV  193 (239)
T ss_dssp             HHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            788999999999999999999999999999999999999999999999999999999999999999999765 9999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |||+ +++.++|||+++|++ |++++.|+++++++.
T Consensus       194 THd~-~~a~~~~dri~vm~~-G~iv~~G~~~el~~~  227 (239)
T d1v43a3         194 THDQ-VEAMTMGDRIAVMNR-GQLLQIGSPTEVYLR  227 (239)
T ss_dssp             ESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred             eCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence            9997 479999999999998 999999999998753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5.6e-60  Score=374.91  Aligned_cols=187  Identities=27%  Similarity=0.382  Sum_probs=171.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...       ..++.+|||||++.+||.+||+||+.++...+.   
T Consensus        35 iG~sGaGKSTll~~i~gl~~-p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---  110 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---  110 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC---
Confidence            69999999999999999998 7999999999997431       124679999999999999999999999887653   


Q ss_pred             ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235          74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S  152 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~  152 (197)
                      .+..+.++++.++++.++|.+..+++|.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |
T Consensus       111 ~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g  190 (240)
T d1g2912         111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG  190 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccC
Confidence            345567788999999999999999999999999999999999999999999999999999999999999999999776 9


Q ss_pred             CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      .|+|++|||+ +++..+|||+++|++ |++++.|+++|++.
T Consensus       191 ~tvi~vTHd~-~~~~~~~drv~vm~~-G~iv~~G~~~el~~  229 (240)
T d1g2912         191 VTTIYVTHDQ-VEAMTMGDRIAVMNR-GVLQQVGSPDEVYD  229 (240)
T ss_dssp             CEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             CEEEEEcCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9999999997 479999999999997 99999999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.3e-60  Score=377.04  Aligned_cols=188  Identities=28%  Similarity=0.396  Sum_probs=170.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++..      ...++.+|||||++.+||.+||+||+.|+...+.   .
T Consensus        37 iG~sGsGKSTll~~i~gl~~-p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~---~  112 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---M  112 (242)
T ss_dssp             ECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---C
T ss_pred             ECCCCCcHHHHHHHHHcCcC-CCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc---C
Confidence            69999999999999999998 799999999999843      1235679999999999999999999999875432   3


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      +..+.++++.++++.++|.+..+++|.+|||||||||+|||||+.+|++|||||||++||+.++.++++.|++++++ |.
T Consensus       113 ~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~  192 (242)
T d1oxxk2         113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV  192 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCC
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999765 99


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+|++||++ +++.++|||+++|++ |++++.|++++++..
T Consensus       193 tvi~vTHd~-~~~~~~~dri~vm~~-G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         193 TLLVVSHDP-ADIFAIADRVGVLVK-GKLVQVGKPEDLYDN  231 (242)
T ss_dssp             EEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence            999999997 478999999999998 999999999998753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-60  Score=377.35  Aligned_cols=188  Identities=27%  Similarity=0.377  Sum_probs=133.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+.....   .+.++.
T Consensus        32 iGpsGsGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~  107 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVI  107 (232)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------------------CHH
T ss_pred             ECCCCChHHHHHHHHhcCCC-CCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHH
Confidence            69999999999999999998 7999999999998653 345679999999999999999999999865442   223355


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~  158 (197)
                      ++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+||||.++.++++.|+++.+ .|.|+|++
T Consensus       108 ~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  187 (232)
T d2awna2         108 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  187 (232)
T ss_dssp             HHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             HHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999965 59999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ||++ +++..+|||+++|++ |++++.|+++++++.
T Consensus       188 THd~-~~a~~~~dri~vm~~-G~iv~~G~~~el~~~  221 (232)
T d2awna2         188 THDQ-VEAMTLADKIVVLDA-GRVAQVGKPLELYHY  221 (232)
T ss_dssp             ESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred             eCCH-HHHHHhCCEEEEEEC-CEEEEEeCHHHHHhC
Confidence            9997 479999999999997 999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.4e-60  Score=375.39  Aligned_cols=185  Identities=27%  Similarity=0.437  Sum_probs=168.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++... ..++.+|||||++.+||.+||+||+.|+...     ....+.
T Consensus        30 iGpnGaGKSTll~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~-----~~~~~~  103 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN-----VERVER  103 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT-----SCHHHH
T ss_pred             ECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcc-----cCHHHH
Confidence            69999999999999999998 7999999999999653 3456799999999999999999999986431     234456


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~  158 (197)
                      ++++.++++.+||.+..++++.+|||||||||+|||||+++|++|||||||+||||.++..+.+.|++++++ |.|+|++
T Consensus       104 ~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v  183 (240)
T d2onka1         104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV  183 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999765 8999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++. ++.++|||+++|++ |++++.|+++++++
T Consensus       184 tHd~~-~~~~~adri~vm~~-G~ii~~G~~~el~~  216 (240)
T d2onka1         184 THDLI-EAAMLADEVAVMLN-GRIVEKGKLKELFS  216 (240)
T ss_dssp             ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEEecHHHHhc
Confidence            99974 79999999999997 99999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-60  Score=375.86  Aligned_cols=187  Identities=27%  Similarity=0.448  Sum_probs=170.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT   74 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~   74 (197)
                      +||||||||||+|+|+|+.+ |++|+|.++|+++...      .+++.+|||||++.+++.+||+||+.++...+..   
T Consensus        37 iG~sGsGKSTLl~~i~Gl~~-p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~---  112 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT---  112 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSSC-CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTC---
T ss_pred             ECCCCCCHHHHHHHHcCCcc-ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCC---
Confidence            69999999999999999998 7999999999998532      2346799999999999999999999998775432   


Q ss_pred             cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      +.++.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |.
T Consensus       113 ~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~  192 (240)
T d3dhwc1         113 PKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL  192 (240)
T ss_dssp             CTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCC
Confidence            33456788999999999999999999999999999999999999999999999999999999999999999999876 99


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |+|++|||+ .++..+|||+++|++ |++++.|+++++++
T Consensus       193 tvi~vTHdl-~~~~~~~dri~vl~~-G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         193 TILLITHEM-DVVKRICDCVAVISN-GELIEQDTVSEVFS  230 (240)
T ss_dssp             EEEEEBSCH-HHHHHHCSEEEEEET-TEEEEEEETTTTTC
T ss_pred             EEEEEcCCH-HHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            999999997 478999999999998 99999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1e-59  Score=370.74  Aligned_cols=184  Identities=27%  Similarity=0.375  Sum_probs=167.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL   79 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   79 (197)
                      +||||||||||+|+|+|+.+ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+...+...      .
T Consensus        32 iGpsGaGKSTll~~l~Gl~~-p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~------~  104 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------D  104 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC------C
T ss_pred             ECCCCCcHHHHHHHHhcCcC-CCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhcccc------H
Confidence            69999999999999999998 7999999999999653 34567999999999999999999999987654321      1


Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Q psy4235          80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICA  158 (197)
Q Consensus        80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~  158 (197)
                      .+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+||||.++.++.++|+++++ .|.|+|++
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  184 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999975 48999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ||++ +++..+|||+++|++ |++++.|+++++++
T Consensus       185 tHd~-~~~~~~~drv~vm~~-G~iv~~g~~~el~~  217 (229)
T d3d31a2         185 THDQ-TEARIMADRIAVVMD-GKLIQVGKPEEIFE  217 (229)
T ss_dssp             ESCH-HHHHHHCSEEEEESS-SCEEEEECHHHHHS
T ss_pred             cCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            9997 479999999999988 99999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-58  Score=362.52  Aligned_cols=184  Identities=27%  Similarity=0.362  Sum_probs=162.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR   73 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~   73 (197)
                      +||||||||||+++|+|+.+ |++|+|+++|+++....      + ++.+|||||++.++|.+||+||+.++........
T Consensus        37 iG~sGsGKSTLl~~i~gl~~-p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~  115 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA  115 (230)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSC
T ss_pred             ECCCCCCcchhhHhccCCCC-CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCC
Confidence            69999999999999999998 79999999999986421      1 2459999999999999999999999876544334


Q ss_pred             ccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235          74 TTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-  151 (197)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-  151 (197)
                      ....+..+++.++++.++|.+ .++++|.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ 
T Consensus       116 ~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~  195 (230)
T d1l2ta_         116 MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED  195 (230)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhh
Confidence            455566778999999999976 579999999999999999999999999999999999999999999999999999765 


Q ss_pred             CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235         152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV  188 (197)
Q Consensus       152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~  188 (197)
                      |.|+|++|||+ +. .++|||+++|++ |+|+++|++
T Consensus       196 g~tii~vTHd~-~~-a~~~drv~~m~~-G~Iv~~g~~  229 (230)
T d1l2ta_         196 GKTVVVVTHDI-NV-ARFGERIIYLKD-GEVEREEKL  229 (230)
T ss_dssp             CCEEEEECSCH-HH-HTTSSEEEEEET-TEEEEEEEC
T ss_pred             CCEEEEECCCH-HH-HHhCCEEEEEEC-CEEEEeccC
Confidence            89999999996 34 589999999998 999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-56  Score=356.91  Aligned_cols=189  Identities=25%  Similarity=0.410  Sum_probs=172.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE   78 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   78 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++...  ..++.+||+||++.+++++|+.||+.|....+..   ...+
T Consensus        34 vG~nGaGKSTLl~~l~G~~~-p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~---~~~~  109 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS---SSSE  109 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC---CHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCC---CHHH
Confidence            69999999999999999998 7999999999998543  3457799999999999999999999998766532   3345


Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235          79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus        79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ..+.++.+++.+++.+..++++++||||||||++|||||+++|++|||||||+||||.++.++.+++++++++|.|||++
T Consensus       110 ~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~  189 (238)
T d1vpla_         110 IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS  189 (238)
T ss_dssp             HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235         159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF  195 (197)
Q Consensus       159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~  195 (197)
                      ||++. ++..+|||+++|++ |++++.|+++++...+
T Consensus       190 tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~el~~~~  224 (238)
T d1vpla_         190 SHNML-EVEFLCDRIALIHN-GTIVETGTVEELKERY  224 (238)
T ss_dssp             ECCHH-HHTTTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred             eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhcc
Confidence            99974 79999999999997 9999999999998765

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.1e-57  Score=361.20  Aligned_cols=188  Identities=27%  Similarity=0.377  Sum_probs=167.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----------------cccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----------------VMSRISGYVAQQDFLIEELTVLEHLQF   64 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----------------~~~~~~~~v~q~~~~~~~ltv~e~l~~   64 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...                .+++.+|||||++.+++.+||.||+.+
T Consensus        34 iG~sGsGKSTLl~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~  112 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME  112 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHcCcc-CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhh
Confidence            69999999999999999998 7999999999998531                134569999999999999999999998


Q ss_pred             HHHccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235          65 MAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN  143 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~  143 (197)
                      +.....  .....+..+++.++++.+++.+. .+++|.+|||||||||+|||||+.+|++|||||||+|||+.++.++++
T Consensus       113 ~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~  190 (258)
T d1b0ua_         113 APIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR  190 (258)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred             hHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHH
Confidence            743222  22345667889999999999864 578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|++++++|.|+|++|||+. ++..+|||+++|++ |++++.|++++++.
T Consensus       191 ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         191 IMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPEQVFG  238 (258)
T ss_dssp             HHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             hhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence            99999988999999999974 78999999999998 99999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=2.4e-56  Score=355.31  Aligned_cols=186  Identities=25%  Similarity=0.392  Sum_probs=163.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   76 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++...+   . +..++|+||+..+|+.+||+||+.++......    .
T Consensus        38 iGpnGaGKSTl~~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~  112 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----K  112 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----S
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----H
Confidence            69999999999999999998 79999999999986532   1 23489999999999999999999876543321    1


Q ss_pred             HHHHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235          77 LELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV  155 (197)
Q Consensus        77 ~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i  155 (197)
                      ....+.++++++.+ ++.+..++++.+|||||||||+|||||+++|++|||||||+||||.++.+++++|++++++|.||
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~ti  192 (240)
T d1ji0a_         113 EGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI  192 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            23345566777766 68889999999999999999999999999999999999999999999999999999999889999


Q ss_pred             EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      |++||++. ++.++|||+++|++ |++++.|+++++++
T Consensus       193 l~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~el~~  228 (240)
T d1ji0a_         193 LLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASELLD  228 (240)
T ss_dssp             EEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHHT
T ss_pred             EEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhc
Confidence            99999974 78999999999998 99999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.4e-56  Score=355.81  Aligned_cols=190  Identities=22%  Similarity=0.303  Sum_probs=166.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM------   70 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------   70 (197)
                      +||||||||||+|+|+|+++ |++|+|+++|+++....    .++.++|+||++.+|+.+||.||+.++.....      
T Consensus        36 iG~nGaGKSTLl~~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~  114 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS  114 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHH
T ss_pred             ECCCCCcHHHHHHHHHCCCc-CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhh
Confidence            69999999999999999998 79999999999986432    22349999999999999999999987532211      


Q ss_pred             ----CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          71 ----DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        71 ----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                          ......+...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+..+.+++++|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~  194 (254)
T d1g6ha_         115 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL  194 (254)
T ss_dssp             HHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             hhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHH
Confidence                1111233455678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++++|.|||++||++. ++.++|||+++|++ |+++++|+++|+.+
T Consensus       195 ~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGEEEIK  239 (254)
T ss_dssp             HHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESHHHHH
T ss_pred             HHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHHHHhh
Confidence            99988999999999985 78999999999998 99999999988643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-53  Score=339.72  Aligned_cols=189  Identities=25%  Similarity=0.378  Sum_probs=155.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc-ccH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR-TTW   76 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-~~~   76 (197)
                      +||||||||||+++|+|+++ |++|+|+++|+++..   ..+++.++||+|++.+|+. ||+||+.++........ ...
T Consensus        46 vG~sGsGKSTLl~li~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~~~~~~~~~  123 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITA  123 (251)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCSSCCCHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhcccC-CCcCEEEECCEecchhhhHHHHHHhhhccccccccCc-chhhhhhhhhcccchHHHHHH
Confidence            69999999999999999999 799999999999854   3456789999999999875 99999988633221110 001


Q ss_pred             HHHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235          77 LELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR  153 (197)
Q Consensus        77 ~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~  153 (197)
                      ........+.++.+  +++...++.+.+||||||||++|||||+.+|++||||||||+||+.++..+++.|+++.++ ++
T Consensus       124 ~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~  203 (251)
T d1jj7a_         124 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR  203 (251)
T ss_dssp             HHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGC
T ss_pred             HHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCC
Confidence            11122233455555  4566677888999999999999999999999999999999999999999999999998765 89


Q ss_pred             EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      |+|++||++.  ..+.||||++|++ |+|++.|+++|+++.
T Consensus       204 Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         204 SVLLITQHLS--LVEQADHILFLEG-GAIREGGTHQQLMEK  241 (251)
T ss_dssp             EEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHHHHHHH
T ss_pred             EEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence            9999999963  4577999999997 999999999999764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-53  Score=335.19  Aligned_cols=182  Identities=25%  Similarity=0.416  Sum_probs=149.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++||||++.+|+. ||+||+.++....     ...
T Consensus        35 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~-----~~~  107 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGM-----SVE  107 (241)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTSTTC-----CHH
T ss_pred             ECCCCCCHHHHHHHHHhcCC-CCCCEEEECCEEecccchhhhhceEEEEecccccCCc-cccccccccCccc-----cHH
Confidence            69999999999999999998 799999999999864   3456789999999998875 9999998753221     111


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ....     .+.+.++.+  +++......+..||||||||++|||||+.+|++||||||||+||+.+.+.+++.|+++.+
T Consensus       108 ~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~  187 (241)
T d2pmka1         108 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK  187 (241)
T ss_dssp             HHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC
Confidence            1111     112223222  233445667789999999999999999999999999999999999999999999999864


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                       ++|+|++||++. . .+.||+|++|++ |+|++.|++++++.
T Consensus       188 -~~Tvi~itH~l~-~-~~~~D~i~vl~~-G~Iv~~G~~~ell~  226 (241)
T d2pmka1         188 -GRTVIIIAHRLS-T-VKNADRIIVMEK-GKIVEQGKHKELLS  226 (241)
T ss_dssp             -TSEEEEECSSGG-G-GTTSSEEEEEET-TEEEEEECHHHHHH
T ss_pred             -CCEEEEEECCHH-H-HHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence             789999999974 4 578999999987 99999999999975

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.2e-52  Score=332.11  Aligned_cols=184  Identities=24%  Similarity=0.397  Sum_probs=153.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|+++|.++...   .+++.++|++|++.+|+. |+++|+.++....    ...+
T Consensus        47 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~~----~~~~  120 (253)
T d3b60a1          47 VGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEE----YSRE  120 (253)
T ss_dssp             EECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSC----CCHH
T ss_pred             ECCCCChHHHHHHHHhcccC-CCccEEEECCcccchhhhhhhhheEEEEeeccccCCc-chhhhhhhcCccc----CCHH
Confidence            69999999999999999998 7999999999998643   456779999999998876 9999998753211    1111


Q ss_pred             HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ...+     .+.+.++.+  |++......+.+|||||||||+|||||+.+|++||||||||+||+.++..|++.|+++.+
T Consensus       121 ~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~  200 (253)
T d3b60a1         121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK  200 (253)
T ss_dssp             HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc
Confidence            1111     123344444  456667778899999999999999999999999999999999999999999999999864


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                       ++|+|++||++. . ...||+|++|++ |+|++.|+++++++.
T Consensus       201 -~~Tvi~itH~l~-~-~~~~D~v~vl~~-G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         201 -NRTSLVIAHRLS-T-IEQADEIVVVED-GIIVERGTHSELLAQ  240 (253)
T ss_dssp             -TSEEEEECSCGG-G-TTTCSEEEEEET-TEEEEEECHHHHHHH
T ss_pred             -CCEEEEEECCHH-H-HHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence             789999999974 4 478999999997 999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.7e-52  Score=331.47  Aligned_cols=179  Identities=28%  Similarity=0.416  Sum_probs=147.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.+|||||++.+|+. ||+||+.++.....    .. 
T Consensus        34 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~-  106 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY----TD-  106 (242)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS----CH-
T ss_pred             ECCCCCCHHHHHHHHHHhhC-CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccccc----ch-
Confidence            69999999999999999999 799999999999864   3467789999999999987 99999976532211    11 


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         ..+.+.++..++           +.....++.+||||||||++|||||+.+|+|||||||||+||+.++..+++.|+
T Consensus       107 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~  183 (242)
T d1mv5a_         107 ---EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD  183 (242)
T ss_dssp             ---HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred             ---hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHH
Confidence               122233333222           122334567899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +++ +++|+|++||++. .+ ..||+|++|++ |++++.|+++|+++
T Consensus       184 ~l~-~~~Tvi~itH~l~-~~-~~~D~i~vl~~-G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         184 SLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKHNELVA  226 (242)
T ss_dssp             HHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCHHHHHH
T ss_pred             HHc-CCCEEEEEECCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence            996 4899999999974 44 66999999997 99999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.1e-51  Score=330.63  Aligned_cols=179  Identities=25%  Similarity=0.376  Sum_probs=149.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+++|+|+++ |++|+|.++|.++..   ..+++.++||+|++.+|+. ||+||+.|+....     .. 
T Consensus        50 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~~~-----~~-  121 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTA-----TD-  121 (255)
T ss_dssp             ECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSC-----CH-
T ss_pred             ECCCCCcHHHHHHHHHhcCC-ccccccccCCEEcccCCHHHhhheeeeeeccccCCCC-CHHHHHhccCcCC-----CH-
Confidence            69999999999999999999 799999999999854   3466789999999998875 9999998753211     11 


Q ss_pred             HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235          78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK  146 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~  146 (197)
                         +.+.++++..++           +......+.+||||||||++|||||+.+|++||||||||+||+.+...|++.|+
T Consensus       122 ---~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~  198 (255)
T d2hyda1         122 ---EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD  198 (255)
T ss_dssp             ---HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence               223344444433           334445567899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235         147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH  194 (197)
Q Consensus       147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~  194 (197)
                      ++.+ ++|+|++||++. . ...||+|++|++ |++++.|+++|+++.
T Consensus       199 ~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~-G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         199 VLSK-DRTTLIVAHRLS-T-ITHADKIVVIEN-GHIVETGTHRELIAK  242 (255)
T ss_dssp             HHTT-TSEEEEECSSGG-G-TTTCSEEEEEET-TEEEEEECHHHHHHT
T ss_pred             HHhc-CCEEEEEeCCHH-H-HHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence            9864 789999999974 4 578999999987 999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.9e-50  Score=315.66  Aligned_cols=181  Identities=24%  Similarity=0.337  Sum_probs=158.0

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL   77 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~   77 (197)
                      +||||||||||+|+|+|+.  |++|+|.++|+++...   .+....+|++|+.......++++++.+.....        
T Consensus        31 iG~nGaGKSTLl~~l~Gl~--~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------  100 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAGMT--SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------  100 (231)
T ss_dssp             BCCTTSSHHHHHHHHHTSC--CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------
T ss_pred             ECCCCCcHHHHHHHHhCCC--CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchh--------
Confidence            6999999999999999975  4789999999998543   23345799999877767779999988653211        


Q ss_pred             HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235          78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT-------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC  150 (197)
Q Consensus        78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~  150 (197)
                      ...+.++++++.+++.+..++++.+||||||||++|||||++       +|++|||||||+|||+.++..+.++|+++++
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~  180 (231)
T d1l7vc_         101 TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ  180 (231)
T ss_dssp             TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            123567889999999999999999999999999999999997       7799999999999999999999999999998


Q ss_pred             CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      +|.|||++||++. ++.++|||+++|++ |++++.|++++++.
T Consensus       181 ~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ev~~  221 (231)
T d1l7vc_         181 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREEVLT  221 (231)
T ss_dssp             TTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHHHHSC
T ss_pred             CCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHHHHhC
Confidence            9999999999974 79999999999987 99999999998853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-47  Score=308.95  Aligned_cols=168  Identities=21%  Similarity=0.287  Sum_probs=136.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|          +++|++|++.+|+. ||+||+.|+....      .    
T Consensus        68 vG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~eni~~~~~~~------~----  125 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILGELE-ASEGIIKHSG----------RVSFCSQFSWIMPG-TIKENIIFGVSYD------E----  125 (281)
T ss_dssp             EESTTSSHHHHHHHHHTSSC-CSEEEEECCS----------CEEEECSSCCCCSE-EHHHHHTTTSCCC------H----
T ss_pred             ECCCCChHHHHHHHHhCCCc-CCCcEEEECC----------EEEEEeccccccCc-eeecccccccccc------c----
Confidence            69999999999999999999 7999999987          37999999999886 9999998753211      1    


Q ss_pred             HHHHHHHHHc-------CC----cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235          81 KTITRVMENL-------GI----NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus        81 ~~~~~~l~~~-------~l----~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .....+++..       .+    .....+.+.+|||||||||+|||||+++|+||||||||++||+.++.++++.+....
T Consensus       126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~  205 (281)
T d1r0wa_         126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL  205 (281)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh
Confidence            1111222222       22    223455667899999999999999999999999999999999999999987654444


Q ss_pred             hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235         150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK  193 (197)
Q Consensus       150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~  193 (197)
                      ..++|+|++||++ + ..+.||||++|++ |++++.|+++|++.
T Consensus       206 ~~~~tvi~itH~~-~-~l~~aDrI~vl~~-G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         206 MANKTRILVTSKM-E-HLRKADKILILHQ-GSSYFYGTFSELQS  246 (281)
T ss_dssp             TTTSEEEEECSCH-H-HHHTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred             hCCCEEEEEechH-H-HHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence            4588999999996 3 4578999999997 99999999999865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.9e-46  Score=286.79  Aligned_cols=165  Identities=25%  Similarity=0.401  Sum_probs=139.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN   80 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   80 (197)
                      +||||||||||+|+|+|+++ |++|+|.++|+++..  .+..++|+||+..++..+|+.+++.+....+... ..    +
T Consensus        33 ~G~NGsGKSTLl~~i~gl~~-p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~----~  104 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VN----K  104 (200)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC----H
T ss_pred             ECCCCChHHHHHHHHhcccc-cCCCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cC----H
Confidence            59999999999999999999 799999999999854  4567899999999999999999999877654322 11    2


Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235          81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH  160 (197)
Q Consensus        81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th  160 (197)
                      +.+.+.++.+++.+ .++++.+||||||||++|||||+.+|+++||||||+|||+.++.++++.|+++.+++.++|+++|
T Consensus       105 ~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~  183 (200)
T d1sgwa_         105 NEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR  183 (200)
T ss_dssp             HHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES
T ss_pred             HHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            45667888888755 45678999999999999999999999999999999999999999999999998876666667666


Q ss_pred             CCcchHHhhcCeEEEEeC
Q psy4235         161 QPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       161 ~~~~~~~~~~d~v~~l~~  178 (197)
                      |.    ..+||++.+|++
T Consensus       184 ~~----l~~~D~~~~l~~  197 (200)
T d1sgwa_         184 EE----LSYCDVNENLHK  197 (200)
T ss_dssp             SC----CTTSSEEEEGGG
T ss_pred             ch----hhhcchhhheee
Confidence            63    357999998864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=8.2e-21  Score=141.72  Aligned_cols=149  Identities=14%  Similarity=0.076  Sum_probs=93.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEec-----CCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-----QDFLIEELTVLEHLQFMAKLTMDRRTT   75 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q-----~~~~~~~ltv~e~l~~~~~~~~~~~~~   75 (197)
                      +||||||||||+++|+|.++ ++.|.+.+.+.+......+  .++...     ...+... +....    ....   +  
T Consensus         6 ~G~~G~GKSTLl~~i~~~l~-~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~----~~~~---~--   72 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVERLG-KRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSK-FFTSK----KLVG---S--   72 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHHG-GGEEEEEEEEEC------C--CEEEEEETTCCEEEEEET-TCCCS----SEET---T--
T ss_pred             ECCCCcHHHHHHHHHHhcCC-CCcceEEECCcchHHHHHh--hhhhhhhhhHHHHHHhhh-hhhhh----hhhh---h--
Confidence            59999999999999999998 6899999887665332211  122111     1110000 00000    0000   0  


Q ss_pred             HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy4235          76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRI  154 (197)
Q Consensus        76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~  154 (197)
                                    .    ..+.....+|+|+++|.++++++..+|+++++|||....  .....+.+.+.++.+ .+.+
T Consensus        73 --------------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~  132 (178)
T d1ye8a1          73 --------------Y----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVN  132 (178)
T ss_dssp             --------------E----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSE
T ss_pred             --------------h----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCE
Confidence                          0    001112247899999999999999999999999985433  334555666666544 4788


Q ss_pred             EEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235         155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYH  185 (197)
Q Consensus       155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~  185 (197)
                      +|+++|+.  ....+|+++..+.+ ++++.-
T Consensus       133 il~~~h~~--~~~~~~~~i~~~~~-~~i~~v  160 (178)
T d1ye8a1         133 VVATIPIR--DVHPLVKEIRRLPG-AVLIEL  160 (178)
T ss_dssp             EEEECCSS--CCSHHHHHHHTCTT-CEEEEC
T ss_pred             EEEEEccH--HHHHhhceEEEEeC-CEEEEE
Confidence            88888875  35678999888876 777543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=4.7e-12  Score=104.83  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             cCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235          99 QISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus        99 ~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      ....+|||||.++++|..+    ..++++++||||+++||+..+..+.++|++++..+.-+|++||++  .+...+|+++
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~  406 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV  406 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEE
Confidence            3467899999998877654    367889999999999999999999999998865556799999986  5789999976


Q ss_pred             EE
Q psy4235         175 LL  176 (197)
Q Consensus       175 ~l  176 (197)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=3.1e-08  Score=78.37  Aligned_cols=74  Identities=28%  Similarity=0.378  Sum_probs=62.8

Q ss_pred             cCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235          99 QISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS  174 (197)
Q Consensus        99 ~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~  174 (197)
                      ....+|+|+|+...++..+    ...|.++++|||-++|+|..+..+.+.|++..+ ..-+|++||.+.  +...+|+++
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~  292 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLH  292 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEE
Confidence            4568999999998877654    457799999999999999999999999999865 578899999974  568899986


Q ss_pred             E
Q psy4235         175 L  175 (197)
Q Consensus       175 ~  175 (197)
                      .
T Consensus       293 ~  293 (308)
T d1e69a_         293 G  293 (308)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.61  E-value=2.4e-07  Score=70.83  Aligned_cols=44  Identities=20%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCC
Q psy4235         119 TEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       119 ~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~iii~th~~  162 (197)
                      .+..++|+||+..|=++.....+ ..++..+.+.+..++++||+.
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            45569999999999999887775 445556666688899999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.4e-06  Score=66.84  Aligned_cols=43  Identities=21%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCC
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVV-NLLKQLACE-SRIVICAIHQP  162 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~-~~~iii~th~~  162 (197)
                      +..++|+||+..|=++.....+. .++..+... ...+|++||..
T Consensus       120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~  164 (234)
T d1wb9a2         120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  164 (234)
T ss_dssp             TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence            45599999999999999998875 456667655 45677777754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=8.2e-06  Score=59.15  Aligned_cols=16  Identities=44%  Similarity=0.567  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|||||||||+|.+|.
T Consensus        30 ~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          30 SGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HSCCSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999996

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=2.2e-05  Score=55.61  Aligned_cols=19  Identities=47%  Similarity=0.503  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|||||||++.|+..+
T Consensus         8 tG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            4999999999999998543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=3.2e-05  Score=58.63  Aligned_cols=27  Identities=41%  Similarity=0.553  Sum_probs=18.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEIL   28 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~   28 (197)
                      +|+||+|||||+|.|.|-.. ...|+|.
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~-~~T~~vs  127 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLK-LRVSEVS  127 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCC-CC-----
T ss_pred             ECCCCCCHHHHHHhhcchhh-hhccCcc
Confidence            59999999999999988654 3456664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=1.1e-05  Score=57.71  Aligned_cols=20  Identities=40%  Similarity=0.647  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+|||||++.++..+.
T Consensus         7 tG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHHH
Confidence            49999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.26  E-value=0.0014  Score=49.95  Aligned_cols=43  Identities=14%  Similarity=0.117  Sum_probs=27.5

Q ss_pred             HhhCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhC-CCEEEEEec
Q psy4235         117 LLTEPQILFCDEPTTGLD--------SYSANNVVNLLKQLACE-SRIVICAIH  160 (197)
Q Consensus       117 l~~~p~llllDEPts~LD--------~~~~~~i~~~l~~l~~~-~~~iii~th  160 (197)
                      --.+|+++++|=- +-++        ......++..|++++++ +.+|++++|
T Consensus       144 ~~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q  195 (277)
T d1cr2a_         144 SGLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH  195 (277)
T ss_dssp             HTTCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             hccCcceEEEccc-ccccccccccchhHHHHHHHHHHHHHhhhccccceeecc
Confidence            3458999999932 2222        13345577778888765 777777766

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=3.8e-05  Score=59.96  Aligned_cols=17  Identities=29%  Similarity=0.741  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|||||||||+|++|.-
T Consensus        30 vG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          30 VGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             ECCTTTCSTHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            69999999999999953

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=6.2e-05  Score=52.49  Aligned_cols=20  Identities=35%  Similarity=0.632  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||+||||||+.+.|+-.+.
T Consensus         8 ~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             ECCTTSCHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            59999999999999986543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=5.8e-05  Score=53.77  Aligned_cols=20  Identities=20%  Similarity=0.366  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||.|||||||.+.|+..+.
T Consensus        13 ~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             ECCTTSHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            49999999999999986543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.06  E-value=2.3e-05  Score=59.65  Aligned_cols=27  Identities=37%  Similarity=0.537  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEIL   28 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~   28 (197)
                      +|+||+|||||+|.|.|-.. ...|+|.
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~-~~t~~vs  129 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELG-LRTNEIS  129 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-----------
T ss_pred             ECCCCccHHHHHHhhccHhH-hhhcccc
Confidence            59999999999999998654 3467665

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.04  E-value=9.4e-05  Score=52.29  Aligned_cols=18  Identities=39%  Similarity=0.510  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||+||||||+.+.|+-.
T Consensus        10 ~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_          10 TGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999743

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=9.3e-05  Score=52.41  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+||||||+.+.|+..+
T Consensus        12 ~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=9.8e-05  Score=53.50  Aligned_cols=20  Identities=35%  Similarity=0.657  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||||||||||++.|....+
T Consensus         8 ~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHST
T ss_pred             ECCCCCCHHHHHHHHHhhCC
Confidence            59999999999999976544

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.96  E-value=0.00015  Score=50.46  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|++|||||||.+.|.
T Consensus         8 ~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFI   23 (152)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.92  E-value=0.00014  Score=51.72  Aligned_cols=20  Identities=25%  Similarity=0.242  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++|||||||++-|...+.
T Consensus         7 ~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHH
Confidence            59999999999998876543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0074  Score=45.59  Aligned_cols=46  Identities=11%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q psy4235         116 QLLTEPQILFCDEPTT-----GLDSYSANNVVNLLKQLACE-SRIVICAIHQ  161 (197)
Q Consensus       116 al~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~~-~~~iii~th~  161 (197)
                      ....+|+++++|--++     --|......++..|+.++.. +.++|++.|.
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            4457999999995532     12556667788888887755 7777777663

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.87  E-value=0.00019  Score=50.85  Aligned_cols=19  Identities=21%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+||||||+.+.|+-.+
T Consensus        11 ~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             EeCCCCCHHHHHHHHHHHh
Confidence            4999999999999998544

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.84  E-value=0.0002  Score=50.31  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+||||||+.+.|+..+
T Consensus         8 ~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHc
Confidence            4999999999999998654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.83  E-value=0.00018  Score=50.94  Aligned_cols=19  Identities=21%  Similarity=0.268  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+-+.|+-.+
T Consensus        12 ~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999998544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.83  E-value=0.00021  Score=50.41  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .|++||||||+.+.|+..+.
T Consensus         9 ~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHHHcC
Confidence            39999999999999987654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00019  Score=52.27  Aligned_cols=19  Identities=47%  Similarity=0.646  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||||||||||++.|+...
T Consensus         7 ~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999987543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00018  Score=58.09  Aligned_cols=16  Identities=31%  Similarity=0.881  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|||||||||+|.+|.
T Consensus        31 ~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999984

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.79  E-value=0.012  Score=43.44  Aligned_cols=60  Identities=18%  Similarity=0.118  Sum_probs=38.3

Q ss_pred             hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCC---------cchHHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTT---GLDSYSANNVVNLLKQLA-CESRIVICAIHQP---------TSGVFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts---~LD~~~~~~i~~~l~~l~-~~~~~iii~th~~---------~~~~~~~~d~v~~l~~  178 (197)
                      .+|++++.|--++   +.+..........+..+. +.+.+++++.|..         ...+...+|-++.+..
T Consensus       115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence            5799999997543   445555555555555544 4578888887742         1124677898887754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.79  E-value=0.00022  Score=50.49  Aligned_cols=19  Identities=32%  Similarity=0.428  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+||||||+.+.|+..+
T Consensus        10 ~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EECTTSCHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.0002  Score=51.62  Aligned_cols=18  Identities=39%  Similarity=0.473  Sum_probs=15.8

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      ||+|||||||.+.|.-.+
T Consensus        29 G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          29 GLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             ECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            899999999999997543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.76  E-value=0.0039  Score=46.29  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=10.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||+|+||||.+==|+-.
T Consensus        18 vGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          18 VGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             ECSCCC----HHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999987666643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.73  E-value=0.00028  Score=50.17  Aligned_cols=20  Identities=20%  Similarity=0.220  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .|++||||||+.+.|+-.+.
T Consensus         7 ~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           7 TGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            39999999999999976543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.73  E-value=0.00018  Score=52.42  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||+|.|+|.
T Consensus        29 vG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          29 AGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHhcCC
Confidence            599999999999999985

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.69  E-value=0.00027  Score=50.21  Aligned_cols=19  Identities=42%  Similarity=0.566  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+.+.|+-.+
T Consensus         6 iG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           6 IGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998544

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00027  Score=51.65  Aligned_cols=18  Identities=56%  Similarity=0.770  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||||||||||.+.|+-.
T Consensus         6 ~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.68  E-value=0.00026  Score=52.86  Aligned_cols=17  Identities=35%  Similarity=0.667  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|||||||++.|..
T Consensus         6 ~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           6 VGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            49999999999999974

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.67  E-value=0.00021  Score=51.28  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||+|.|+|.
T Consensus         6 vG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999985

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00027  Score=49.00  Aligned_cols=18  Identities=44%  Similarity=0.571  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus         6 iG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.65  E-value=0.00028  Score=49.00  Aligned_cols=18  Identities=39%  Similarity=0.442  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|||||||++.+++-
T Consensus         6 vG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.64  E-value=0.0003  Score=50.24  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+-+.|+-.+
T Consensus         8 ~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           8 VGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.00062  Score=48.82  Aligned_cols=18  Identities=28%  Similarity=0.505  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.|+|.
T Consensus        14 iG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHHCC
Confidence            599999999999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.64  E-value=0.00019  Score=51.11  Aligned_cols=19  Identities=42%  Similarity=0.501  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++|||||||++.+.+-.
T Consensus        19 vG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC-
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999998743

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00033  Score=49.84  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.|+|..
T Consensus         6 iG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00033  Score=50.77  Aligned_cols=18  Identities=17%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||||+|||||++.|...
T Consensus         9 ~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998743

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.55  E-value=0.00035  Score=48.79  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235         112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus       112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l  148 (197)
                      .++..++.+..+-++  |+|+.+-....++++.|.+.
T Consensus       130 ~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~  164 (169)
T d1upta_         130 SLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET  164 (169)
T ss_dssp             HHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence            344445555555555  89999999988888777543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00039  Score=51.59  Aligned_cols=18  Identities=56%  Similarity=0.820  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||||||||||.+.|.-.
T Consensus         8 ~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           8 SAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999998643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00033  Score=49.07  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|+|||||++.|+|.-
T Consensus         7 vG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.00041  Score=49.20  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|++||||||+-+.|+-.+.
T Consensus         7 iG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             ECSTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            59999999999999986543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00039  Score=50.70  Aligned_cols=19  Identities=37%  Similarity=0.588  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|||||||++.|+|-.
T Consensus         9 vG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.48  E-value=0.00028  Score=50.85  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.++|||||+|.|+|.
T Consensus         7 iG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEE
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.45  E-value=0.00037  Score=50.48  Aligned_cols=18  Identities=17%  Similarity=0.272  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus         9 ~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           9 SGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999743

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00049  Score=48.98  Aligned_cols=18  Identities=33%  Similarity=0.455  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||+|.|+|.
T Consensus        11 iG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00024  Score=51.20  Aligned_cols=19  Identities=47%  Similarity=0.545  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|++||||||+-+.|+-.+
T Consensus        25 ~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          25 TGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             ESSCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4999999999999997543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.41  E-value=0.00048  Score=52.15  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG   31 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g   31 (197)
                      .||+|||||||.+.|++.+.   .+-+.++.
T Consensus        38 ~GpPGtGKT~la~~la~~~~---~~~~~i~~   65 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFEETQ---GNVIVIDN   65 (273)
T ss_dssp             ECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             ECCCCCCHHHHHHHHHHHhh---cceEEEec
Confidence            49999999999999998654   22345554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.39  E-value=0.00053  Score=48.98  Aligned_cols=18  Identities=33%  Similarity=0.361  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus         6 ~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999743

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.38  E-value=0.00061  Score=50.78  Aligned_cols=19  Identities=42%  Similarity=0.643  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||||.++|+..+
T Consensus        51 ~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          51 AGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             ESCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHH
Confidence            3999999999999998643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.34  E-value=0.00047  Score=50.00  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +||.||||||+.+.|+-
T Consensus        12 ~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999984

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.33  E-value=0.00092  Score=53.01  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=21.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILL   29 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~   29 (197)
                      .|+.|||||||+++|++.++ +..=-|.+
T Consensus       172 ~G~tgSGKTT~l~al~~~i~-~~~rivti  199 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEFIP-KEERIISI  199 (323)
T ss_dssp             EESTTSSHHHHHHHHGGGSC-TTCCEEEE
T ss_pred             EeeccccchHHHHHHhhhcc-cccceeec
Confidence            38999999999999999876 44333444

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.33  E-value=0.00059  Score=48.01  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|+.|||||||++.+.+-.
T Consensus         8 vG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           8 LGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             ECSTTSSHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            6999999999999998753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.33  E-value=0.00058  Score=48.66  Aligned_cols=19  Identities=32%  Similarity=0.531  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|+..+.
T Consensus         8 G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           8 GIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             ECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0007  Score=49.84  Aligned_cols=18  Identities=17%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |++|||||||.+.|+-.+
T Consensus         9 G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           9 GGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             CSTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999997544

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.30  E-value=0.00066  Score=48.55  Aligned_cols=18  Identities=33%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.|+|.
T Consensus        11 vG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999985

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00074  Score=50.23  Aligned_cols=17  Identities=47%  Similarity=0.788  Sum_probs=15.7

Q ss_pred             CCCCCcHHHHHHHHhcC
Q psy4235           2 SPSGAGKTTLLAALNKR   18 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~   18 (197)
                      ||+|+|||||.++++..
T Consensus        40 Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          40 GPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHH
Confidence            99999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.29  E-value=0.00056  Score=49.61  Aligned_cols=18  Identities=39%  Similarity=0.477  Sum_probs=16.1

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+.||||||+++.|+..+
T Consensus        16 G~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CSTTSCHHHHHHTTGGGT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            899999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.00067  Score=49.30  Aligned_cols=19  Identities=37%  Similarity=0.392  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||.||||||+.+.|+-.+
T Consensus        14 ~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999998543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.00076  Score=50.72  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+||||+.++|+....
T Consensus        58 ~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          58 YGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             ECSTTSSHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            39999999999999996543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.24  E-value=0.00046  Score=49.47  Aligned_cols=18  Identities=39%  Similarity=0.613  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.++|||||++.|+|.
T Consensus         7 vG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.24  E-value=0.00058  Score=52.32  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|.+|+|||||+|.|.|..
T Consensus        38 vG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.00074  Score=49.11  Aligned_cols=19  Identities=21%  Similarity=0.308  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|.+|||||||.+.|+..+
T Consensus         8 ~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           8 VGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.00074  Score=48.53  Aligned_cols=16  Identities=31%  Similarity=0.441  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|++||||||+.+-++
T Consensus        20 ~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             ECCTTSSHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999885

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.00091  Score=49.98  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+||||+.++|+..+.
T Consensus        41 ~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          41 AGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             ESSTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHhccC
Confidence            39999999999999987654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.16  E-value=0.00084  Score=48.19  Aligned_cols=19  Identities=32%  Similarity=0.399  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||.||||||+.+.|+-.+
T Consensus         6 ~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999998543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.0009  Score=47.93  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus         6 ~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999743

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.00092  Score=48.32  Aligned_cols=17  Identities=35%  Similarity=0.446  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +||.||||||..+.|+-
T Consensus         7 ~GppGSGKsT~a~~La~   23 (194)
T d1teva_           7 LGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999984

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.11  E-value=0.00076  Score=47.74  Aligned_cols=18  Identities=33%  Similarity=0.445  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|||||||++.|.+.
T Consensus        21 vG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.08  E-value=0.0011  Score=48.83  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=16.0

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      ||+||||||+.+.|+--+
T Consensus        10 Gp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CSSCSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998533

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.00041  Score=49.41  Aligned_cols=18  Identities=33%  Similarity=0.492  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.++|||||+|.|+|.
T Consensus        22 vG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.04  E-value=0.0011  Score=47.92  Aligned_cols=17  Identities=47%  Similarity=0.694  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +||.||||||+.+.|+-
T Consensus         9 ~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999983

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.00085  Score=47.97  Aligned_cols=17  Identities=24%  Similarity=0.212  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +||.||||||..+.|+-
T Consensus         6 ~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999974

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0011  Score=47.59  Aligned_cols=18  Identities=44%  Similarity=0.721  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus         8 ~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999843

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.01  E-value=0.0009  Score=48.58  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus        14 ~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999843

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.0012  Score=49.38  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+|||||.+++++.+.
T Consensus        41 ~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          41 FGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             ECCTTSCHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHhC
Confidence            39999999999999997544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.00  E-value=0.0011  Score=46.75  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus         8 ~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999988753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0012  Score=48.19  Aligned_cols=18  Identities=28%  Similarity=0.327  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus         6 vG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            599999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0015  Score=48.40  Aligned_cols=17  Identities=35%  Similarity=0.454  Sum_probs=15.4

Q ss_pred             CCCCCcHHHHHHHHhcC
Q psy4235           2 SPSGAGKTTLLAALNKR   18 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~   18 (197)
                      ||+|+||||+.++++..
T Consensus        43 Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          43 GMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHH
Confidence            99999999999999753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0084  Score=45.87  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             CCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235           2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCP   33 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~   33 (197)
                      ||+|||||||+-.++.....+..--++++.+.
T Consensus        61 G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          61 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            99999999998776643321222234555443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.80  E-value=0.0015  Score=47.38  Aligned_cols=18  Identities=33%  Similarity=0.586  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||.||||||+.+.|+-.
T Consensus        12 iG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999843

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.00033  Score=49.02  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.++|||||+|.|+|.
T Consensus         6 iG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999985

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0011  Score=49.26  Aligned_cols=19  Identities=26%  Similarity=0.394  Sum_probs=17.1

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+-||||||+++.|+..+.
T Consensus         9 G~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CSTTSSHHHHHTTTGGGCT
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            8999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.0016  Score=45.98  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        11 vG~~~vGKTsLi~~l~~   27 (169)
T d3raba_          11 IGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHc
Confidence            69999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0018  Score=45.83  Aligned_cols=18  Identities=33%  Similarity=0.536  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus         8 vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHcC
Confidence            699999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0022  Score=46.84  Aligned_cols=18  Identities=50%  Similarity=0.737  Sum_probs=16.0

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      ||.||||||+-+.|+-.+
T Consensus        10 GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_          10 GPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0021  Score=47.47  Aligned_cols=41  Identities=7%  Similarity=0.143  Sum_probs=26.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      +.+++++||. ..+....+..+.+.|.+... ...++++++..
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~  139 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYA  139 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCG
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcH
Confidence            3469999996 46777777888888776532 33445555443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.62  E-value=0.079  Score=38.72  Aligned_cols=19  Identities=37%  Similarity=0.363  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|+||||.+-=|+-.+
T Consensus        16 vGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          16 VGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             ECCTTTTHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999887777544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.62  E-value=0.0017  Score=46.60  Aligned_cols=18  Identities=33%  Similarity=0.337  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+..||||||++.|++.
T Consensus        11 iG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EECTTSSHHHHHHHHHTT
T ss_pred             EeCCCCcHHHHHHHHHHh
Confidence            588999999999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.61  E-value=0.0015  Score=46.29  Aligned_cols=18  Identities=44%  Similarity=0.567  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        22 vG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EESTTSSHHHHHHHHCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0021  Score=45.65  Aligned_cols=17  Identities=35%  Similarity=0.718  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        10 vG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999998765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.46  E-value=0.0028  Score=46.05  Aligned_cols=18  Identities=39%  Similarity=0.536  Sum_probs=16.0

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |.-||||||+++.|...+
T Consensus         7 G~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           7 GVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             CSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            899999999999998654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0019  Score=45.47  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus         9 iG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EESTTSSHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999998763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0024  Score=47.68  Aligned_cols=42  Identities=7%  Similarity=0.124  Sum_probs=29.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      ..+++++||.-. |....+..+.+.+.+.. ....+|+++++..
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence            566999999865 77777777777776543 2345678887764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.37  E-value=0.0029  Score=48.02  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||+|.+.|+...
T Consensus        46 ~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhhcc
Confidence            4999999999999998643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0026  Score=44.63  Aligned_cols=17  Identities=18%  Similarity=0.415  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus         8 iG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999997764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.0028  Score=52.26  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGL   22 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~   22 (197)
                      |||+|+|||-|.|.|+..+.-|
T Consensus        55 iGPTGvGKTlLAr~LAk~l~VP   76 (443)
T d1g41a_          55 IGPTGVGKTEIARRLAKLANAP   76 (443)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC
Confidence            6999999999999999876433

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.0027  Score=49.75  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||+|+|||+|.|+|+....
T Consensus        55 ~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhhccc
Confidence            49999999999999997643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.34  E-value=0.0032  Score=46.50  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=22.8

Q ss_pred             CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~   34 (197)
                      .|.+|||||||.+.|.-.+.. ...-.+.++|..+
T Consensus        30 tGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          30 TGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            499999999999999743320 0113467777664

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0023  Score=52.02  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|.+|+|||||+|.|.|.-
T Consensus        62 ~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0034  Score=47.96  Aligned_cols=19  Identities=37%  Similarity=0.613  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||+|+|||+|.+.|+..+
T Consensus        51 ~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHHHc
Confidence            3999999999999999654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0023  Score=44.96  Aligned_cols=18  Identities=33%  Similarity=0.558  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||++.+++-
T Consensus         8 vG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EESTTSSHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999988753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.29  E-value=0.013  Score=45.01  Aligned_cols=18  Identities=39%  Similarity=0.551  Sum_probs=15.3

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      ||+|||||||+-.++...
T Consensus        64 G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          64 GPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ESTTSSHHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHH
Confidence            899999999998887543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.24  E-value=0.0034  Score=47.65  Aligned_cols=19  Identities=37%  Similarity=0.601  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||+|.++|+...
T Consensus        48 ~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ecCCCCChhHHHHHHHHHc
Confidence            3999999999999999643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0034  Score=48.07  Aligned_cols=20  Identities=35%  Similarity=0.605  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||+|+|||+|.+++++.+.
T Consensus        47 ~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             BCCTTSSHHHHHHHHHHHTT
T ss_pred             ECCCCCcchhHHHHHHHHhC
Confidence            39999999999999997654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.003  Score=44.74  Aligned_cols=18  Identities=28%  Similarity=0.621  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHhcC
Confidence            699999999999987653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.0025  Score=47.42  Aligned_cols=18  Identities=39%  Similarity=0.460  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +||+|+||||.+==|+-.
T Consensus        17 vGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          17 VGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999987666643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0034  Score=44.17  Aligned_cols=17  Identities=29%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         8 iG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999998775

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0033  Score=44.93  Aligned_cols=18  Identities=39%  Similarity=0.569  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|+.|+|||||++.+.+-
T Consensus        11 vG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCS
T ss_pred             ECCCCcCHHHHHHHHhcC
Confidence            599999999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.13  E-value=0.0027  Score=47.02  Aligned_cols=19  Identities=37%  Similarity=0.532  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|+||||.+==|+-.+
T Consensus        12 vGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2          12 VGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999876666443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.004  Score=47.39  Aligned_cols=19  Identities=32%  Similarity=0.571  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||+|.++++...
T Consensus        44 ~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          44 YGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ecCCCCCchHHHHHHHHHh
Confidence            3999999999999999754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.004  Score=43.86  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|..|+|||||++.+.+..
T Consensus         7 vG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC-
T ss_pred             ECCCCcCHHHHHHHHhCCc
Confidence            5999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.06  E-value=0.0019  Score=46.12  Aligned_cols=18  Identities=44%  Similarity=0.571  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus        23 vG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEETTSSHHHHHHHTCCS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999998653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.003  Score=46.93  Aligned_cols=19  Identities=32%  Similarity=0.566  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|+||||.+-=|+-.+
T Consensus        15 vGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2          15 VGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999876666444

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.05  E-value=0.0037  Score=44.63  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         8 vG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.003  Score=44.56  Aligned_cols=17  Identities=29%  Similarity=0.593  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        11 vG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0039  Score=43.72  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|..|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0031  Score=44.47  Aligned_cols=17  Identities=24%  Similarity=0.429  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|.+|+|||||++.+.+
T Consensus        11 vG~~~vGKTsLi~r~~~   27 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0039  Score=45.60  Aligned_cols=18  Identities=33%  Similarity=0.388  Sum_probs=15.9

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+.||||||+++.|.-.+
T Consensus         9 G~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           9 GLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             ECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            899999999999998654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.99  E-value=0.0047  Score=46.09  Aligned_cols=20  Identities=35%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+||||+++.|+-.+.
T Consensus        49 ~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             ECCTTSSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            49999999999999987654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0041  Score=43.42  Aligned_cols=17  Identities=29%  Similarity=0.323  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         8 iG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999998874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.97  E-value=0.005  Score=46.25  Aligned_cols=19  Identities=47%  Similarity=0.518  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+||||+++.++-.+
T Consensus        52 ~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          52 IGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             TTCCSSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            3999999999999998644

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.96  E-value=0.0039  Score=44.81  Aligned_cols=15  Identities=40%  Similarity=0.563  Sum_probs=14.2

Q ss_pred             CCCCCcHHHHHHHHh
Q psy4235           2 SPSGAGKTTLLAALN   16 (197)
Q Consensus         2 G~nGaGKSTLl~~i~   16 (197)
                      |+.||||||+.+.|.
T Consensus        10 G~~gSGKstva~~l~   24 (191)
T d1uf9a_          10 GNIGSGKSTVAALLR   24 (191)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999999986

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0045  Score=43.81  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|..|+|||||++.+.+..
T Consensus         9 vG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCC
T ss_pred             ECCCCcCHHHHHHHHHhCc
Confidence            6999999999999998753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0034  Score=44.06  Aligned_cols=17  Identities=18%  Similarity=0.313  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        10 iG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999999764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0055  Score=45.24  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             CCCCCcHHHHHHHHhcCcCCCceeEE
Q psy4235           2 SPSGAGKTTLLAALNKRVKGLVQGEI   27 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~~~~~G~i   27 (197)
                      |+.||||||+.+.|+-.+.  .+|.+
T Consensus        10 G~DGsGKST~~~~L~~~L~--~~~~~   33 (214)
T d1tmka_          10 GLDRTGKTTQCNILYKKLQ--PNCKL   33 (214)
T ss_dssp             ESTTSSHHHHHHHHHHHTT--TSEEE
T ss_pred             CCCCCcHHHHHHHHHHHHH--hCCEE
Confidence            8899999999999987665  34544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0044  Score=43.97  Aligned_cols=18  Identities=33%  Similarity=0.612  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|..|+|||||++.+.+-
T Consensus        13 vG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0046  Score=43.34  Aligned_cols=18  Identities=28%  Similarity=0.588  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||++.+.+-
T Consensus        10 vG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999888753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0038  Score=43.60  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         6 vG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.79  E-value=0.0046  Score=46.22  Aligned_cols=17  Identities=12%  Similarity=0.219  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .||.|+|||||++.++-
T Consensus        35 ~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            39999999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.75  E-value=0.0043  Score=45.98  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCcee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQG   25 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G   25 (197)
                      +|.+|+|||||++-+.--...|+-|
T Consensus        12 lG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2          12 LGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             ECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            6999999999999875322225555

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.75  E-value=0.005  Score=43.16  Aligned_cols=17  Identities=18%  Similarity=0.509  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+..
T Consensus        10 vG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.005  Score=43.48  Aligned_cols=17  Identities=24%  Similarity=0.515  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++|+|||||++.+..
T Consensus        12 vG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999987764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.74  E-value=0.0028  Score=44.86  Aligned_cols=18  Identities=39%  Similarity=0.464  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|++|+|||||++.+.+-
T Consensus        18 vG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEETTSSHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0052  Score=43.10  Aligned_cols=17  Identities=24%  Similarity=0.362  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         9 vG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.0049  Score=48.75  Aligned_cols=18  Identities=39%  Similarity=0.562  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .||.|||||||++.+...
T Consensus        60 tG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            399999999999999754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0042  Score=44.04  Aligned_cols=18  Identities=33%  Similarity=0.420  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||++.+.+-
T Consensus         8 vG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EESTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            599999999999988753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0053  Score=45.19  Aligned_cols=18  Identities=28%  Similarity=0.257  Sum_probs=15.8

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+.||||||+.+.|...+
T Consensus        10 G~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_          10 GVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             ESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            899999999999987654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0057  Score=45.38  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=16.3

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+-||||||+++.|.-.+.
T Consensus         9 G~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             ECTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCcHHHHHHHHHHHHh
Confidence            7889999999999986543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0056  Score=48.00  Aligned_cols=19  Identities=21%  Similarity=0.268  Sum_probs=16.7

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |++||||||+.+.|..++.
T Consensus        87 G~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             ECTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCcHHHHHHHHHHh
Confidence            8999999999999987654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.0048  Score=44.51  Aligned_cols=17  Identities=35%  Similarity=0.614  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        12 vG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHhh
Confidence            59999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0062  Score=42.81  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus        12 vG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999999874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0065  Score=42.71  Aligned_cols=17  Identities=24%  Similarity=0.495  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus         8 vG~~~vGKTsli~r~~~   24 (168)
T d2atva1           8 FGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.0065  Score=42.79  Aligned_cols=17  Identities=24%  Similarity=0.440  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus        10 vG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.0066  Score=43.45  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=16.5

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy4235         130 TTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus       130 ts~LD~~~~~~i~~~l~~l  148 (197)
                      ||++|..+.+.+++.+++.
T Consensus       175 TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         175 TTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             CCTTCHHHHHHHHHHHHHH
T ss_pred             eeeeCcHHHHHHHHHHHHH
Confidence            8999999999988887663

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.0066  Score=42.59  Aligned_cols=18  Identities=11%  Similarity=0.375  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|..|+|||||++.+.+-
T Consensus         9 vG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCcCHHHHHHHHHhC
Confidence            699999999999987653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0066  Score=43.25  Aligned_cols=18  Identities=28%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.+|+|||||++.+.+-
T Consensus        11 iG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999987753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.35  E-value=0.0067  Score=45.08  Aligned_cols=18  Identities=33%  Similarity=0.444  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|...||||||++.|.+.
T Consensus        11 iGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCccHHHHHHHHHhh
Confidence            589999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.35  E-value=0.008  Score=43.85  Aligned_cols=16  Identities=31%  Similarity=0.449  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|+.||||||+.+++.
T Consensus         8 TG~igSGKStv~~~l~   23 (205)
T d1jjva_           8 TGGIGSGKTTIANLFT   23 (205)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999985

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0089  Score=42.59  Aligned_cols=18  Identities=22%  Similarity=0.252  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .||+|+|||||+..++..
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            399999999999888743

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.0059  Score=43.06  Aligned_cols=17  Identities=29%  Similarity=0.559  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus        11 vG~~~vGKTsll~~~~~   27 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.0061  Score=43.07  Aligned_cols=17  Identities=24%  Similarity=0.429  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus        12 vG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.26  E-value=0.0038  Score=48.54  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=13.5

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+|||||||+.+.|.-.+.
T Consensus        11 G~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCC---CCTHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHh
Confidence            9999999999999876543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.22  E-value=0.75  Score=34.41  Aligned_cols=16  Identities=19%  Similarity=0.347  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|.-|.|||||.+.+.
T Consensus        50 ~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          50 HGRAGSGKSVIASQAL   65 (277)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3899999999999885

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.0049  Score=43.56  Aligned_cols=17  Identities=35%  Similarity=0.587  Sum_probs=5.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+++
T Consensus        12 vG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             ECCCCC-----------
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.0085  Score=42.63  Aligned_cols=18  Identities=17%  Similarity=0.372  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|..|+|||||++.+.+-
T Consensus        11 lG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhC
Confidence            699999999999987653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.08  E-value=0.0043  Score=48.75  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||.|+|||||.|.++++++
T Consensus        34 ~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          34 FGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             ECCGGGCTTHHHHHHHHHSC
T ss_pred             ECCCCccHHHHHHHHHHhCC
Confidence            49999999999999999886

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.06  E-value=0.0086  Score=42.06  Aligned_cols=17  Identities=24%  Similarity=0.401  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus        10 vG~~~vGKTsli~~~~~   26 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.0045  Score=43.73  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+++
T Consensus         9 vG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EECTTSSHHHHHHTTC-
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.011  Score=45.90  Aligned_cols=17  Identities=24%  Similarity=0.460  Sum_probs=14.5

Q ss_pred             CCCCCcHHHHHHHHhcC
Q psy4235           2 SPSGAGKTTLLAALNKR   18 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~   18 (197)
                      |+.|||||||.+.|.-.
T Consensus        34 G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          34 GPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            89999999999887543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.99  E-value=0.011  Score=46.64  Aligned_cols=18  Identities=33%  Similarity=0.460  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      .||.|||||||+..+...
T Consensus        57 tG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          57 TGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            399999999999999753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.0096  Score=41.75  Aligned_cols=17  Identities=41%  Similarity=0.644  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|+.|+|||||++.+.+
T Consensus        12 vG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999997754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.85  E-value=0.011  Score=47.81  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      ++..+|=++|++++..|..   |+.+....    .+.+..|..|+-+.|-.
T Consensus       219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a----~~aa~tGhlV~tTlHa~  262 (401)
T d1p9ra_         219 GLRAILRQDPDVVMVGEIR---DLETAQIA----VQASLTGHLVMSTLHTN  262 (401)
T ss_dssp             HHHHHGGGCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEECCS
T ss_pred             HHHHHHhhcCCEEEecCcC---ChHHHHHH----HHHHhcCCeEEEEeccC
Confidence            3555667899999999986   34433333    34556788888888854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.01  Score=41.41  Aligned_cols=17  Identities=24%  Similarity=0.520  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+..
T Consensus         9 vG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            69999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.011  Score=42.27  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+..
T Consensus        15 vG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            59999999999988764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.50  E-value=0.01  Score=45.63  Aligned_cols=53  Identities=11%  Similarity=0.128  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q psy4235         106 GQRKRLALAVQLLTEPQIL--FCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQ  161 (197)
Q Consensus       106 Gq~qrv~ia~al~~~p~ll--llDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~  161 (197)
                      ...+--.+++..+.++.-+  ++.....  |.. ......+++++... .++++++|+-
T Consensus       147 ~~~~i~~~~~~y~~~~~~~il~v~~a~~--~~~-~~~~~~~~~~~~~~~~r~i~Vltk~  202 (299)
T d2akab1         147 IEFQIRDMLMQFVTKENCLILAVSPANS--DLA-NSDALKIAKEVDPQGQRTIGVITKL  202 (299)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEEEEESSS--CGG-GCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred             HHHHHHHHHHHHhcCccceeeeeccccc--chh-hhHHHHHHHHhCcCCCceeeEEecc
Confidence            3344457788888888743  3343322  332 23455666666544 4688888764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.50  E-value=0.016  Score=41.79  Aligned_cols=19  Identities=37%  Similarity=0.309  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|.-.+|||||++.|+|..
T Consensus        11 iGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3          11 VGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             ECSTTSSHHHHHHHHHTCC
T ss_pred             EeccCCcHHHHHHHHHhhh
Confidence            5778999999999999854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.48  E-value=0.015  Score=41.05  Aligned_cols=19  Identities=16%  Similarity=0.230  Sum_probs=16.8

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy4235         130 TTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus       130 ts~LD~~~~~~i~~~l~~l  148 (197)
                      ||+.|..+.+.+++.+++.
T Consensus       172 tSA~~~~nv~~~F~~v~~~  190 (195)
T d1svsa1         172 TCATDTKNVQFVFDAVTDV  190 (195)
T ss_dssp             CCTTCHHHHHHHHHHHHHH
T ss_pred             EEeECCHhHHHHHHHHHHH
Confidence            9999999999999888764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.011  Score=42.04  Aligned_cols=17  Identities=41%  Similarity=0.552  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|.+|+|||||++.+..
T Consensus         8 iG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999987654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.46  E-value=0.011  Score=45.73  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +|.-.||||||+|+|+|.-
T Consensus        30 vG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          30 VGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EECSSSSHHHHHHHHHTSC
T ss_pred             EeCCCCCHHHHHHHHhCCC
Confidence            5888999999999999964

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.015  Score=42.36  Aligned_cols=16  Identities=31%  Similarity=0.466  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|..||||||..+++.
T Consensus         9 tG~igSGKStv~~~l~   24 (208)
T d1vhta_           9 TGGIGSGKSTVANAFA   24 (208)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHH
Confidence            4999999999999986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.36  E-value=0.017  Score=41.43  Aligned_cols=16  Identities=31%  Similarity=0.362  Sum_probs=13.6

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|+||+|||||.-.+.
T Consensus        20 ~G~sG~GKStlal~l~   35 (176)
T d1kkma_          20 TGDSGVGKSETALELV   35 (176)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            4999999999987664

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.34  E-value=0.013  Score=42.05  Aligned_cols=16  Identities=31%  Similarity=0.316  Sum_probs=13.6

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|+||+|||||.-.+.
T Consensus        21 ~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          21 TGRSGIGKSECALDLI   36 (177)
T ss_dssp             EESSSSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            3899999999987764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.26  E-value=0.017  Score=42.54  Aligned_cols=47  Identities=11%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcc
Q psy4235         118 LTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQPTS  164 (197)
Q Consensus       118 ~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~  164 (197)
                      ....++|++|+--. .-++..+..++.++......++.+|+++.....
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~  142 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ  142 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence            45889999998754 235777888999999988888888888876543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.013  Score=41.89  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|..|+|||||++.+.+
T Consensus         9 lG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           9 VGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999988764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.02  Score=42.62  Aligned_cols=51  Identities=18%  Similarity=0.169  Sum_probs=33.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235         121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV  173 (197)
Q Consensus       121 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v  173 (197)
                      .+++|+||.-. |....+..+++.+.+.. ....+|++|++.......+-.|.
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i~~~i~SRc  166 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRC  166 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccccChhHhhhh
Confidence            56999999864 78888877777775532 24577777776543333333443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.88  E-value=0.029  Score=44.26  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=16.8

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+=|+||||+++.|+..+.
T Consensus        13 G~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_          13 GVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             CSTTSSHHHHHHHHHSGGG
T ss_pred             CCccCCHHHHHHHHHHHhc
Confidence            8899999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.018  Score=45.02  Aligned_cols=20  Identities=35%  Similarity=0.606  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||+|+|||.|.+.|+-.+.
T Consensus        58 ~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          58 AGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             ECSTTSSHHHHHHHHHHHHT
T ss_pred             ECCCcchhHHHHHHHHhhcc
Confidence            59999999999999986553

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.023  Score=41.50  Aligned_cols=42  Identities=14%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      +.+++|+||. -.|...++..+++.+.+.. .+..+|++|+++.
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~  149 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPE  149 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence            4789999976 3455667777777776543 2455677777754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.016  Score=42.88  Aligned_cols=17  Identities=47%  Similarity=0.509  Sum_probs=14.3

Q ss_pred             CCCCCcHHHHHHHHhcC
Q psy4235           2 SPSGAGKTTLLAALNKR   18 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~   18 (197)
                      |.=|||||||++-+...
T Consensus        10 GFLGaGKTTll~~lL~~   26 (222)
T d1nija1          10 GFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             ESSSSSCHHHHHHHHHS
T ss_pred             eCCCCCHHHHHHHHHhc
Confidence            66799999999998753

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.48  E-value=0.018  Score=44.64  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=35.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235         100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP  162 (197)
Q Consensus       100 ~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~  162 (197)
                      ..+++.-+.+++.-..-+...|-++++=.    .|....+.+-++.+...+++..++.++...
T Consensus       195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~  253 (319)
T d1wxqa1         195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAA  253 (319)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHH
Confidence            34567777777777777777887777532    122234445555555555666766665543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.40  E-value=0.019  Score=40.68  Aligned_cols=19  Identities=21%  Similarity=0.153  Sum_probs=16.4

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy4235         130 TTGLDSYSANNVVNLLKQL  148 (197)
Q Consensus       130 ts~LD~~~~~~i~~~l~~l  148 (197)
                      ||+.|-.+.+.+++.+++.
T Consensus       175 tSAk~~~ni~~vF~~i~~~  193 (200)
T d2bcjq2         175 TCATDTENIRFVFAAVKDT  193 (200)
T ss_dssp             CCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEcCHhHHHHHHHHHHH
Confidence            8999999999999888664

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.26  E-value=0.024  Score=40.35  Aligned_cols=16  Identities=31%  Similarity=0.331  Sum_probs=13.0

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .|++|+|||||.-.+.
T Consensus        21 ~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          21 TGDSGIGKSETALELI   36 (169)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            4899999999886554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.23  E-value=0.019  Score=44.33  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|..-|||||||++|++-
T Consensus        16 vG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          16 VGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EECSSSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHCC
Confidence            588899999999999974

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.023  Score=41.47  Aligned_cols=16  Identities=25%  Similarity=0.326  Sum_probs=14.0

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .||+|||||||.-.++
T Consensus        40 ~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          40 FGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESTTSSHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            3899999999998775

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.02  Score=44.02  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||-++|||||||.|.|..
T Consensus        38 ~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          38 VGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEBTTSSHHHHHHHHTTCS
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.01  E-value=0.029  Score=44.14  Aligned_cols=18  Identities=39%  Similarity=0.379  Sum_probs=14.9

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+=||||||+++.|+..+
T Consensus        11 G~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_          11 GPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             SCTTSSHHHHHHHHTC--
T ss_pred             CCcCCCHHHHHHHHHHHh
Confidence            889999999999997544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.89  E-value=0.028  Score=44.81  Aligned_cols=20  Identities=35%  Similarity=0.708  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +||+|+|||-|.|.|+-+..
T Consensus        74 iGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          74 IGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             ECCTTSSHHHHHHHHHHHTT
T ss_pred             eCCCCccHHHHHHHHHhhcc
Confidence            69999999999999986653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.84  E-value=0.036  Score=38.95  Aligned_cols=18  Identities=39%  Similarity=0.508  Sum_probs=15.4

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |+=|||||||.|.++.-+
T Consensus        40 G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          40 GDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSTTSSHHHHHHHHHHHT
T ss_pred             cCCCccHHHHHHHHHhhc
Confidence            788999999999997543

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.76  E-value=0.097  Score=36.59  Aligned_cols=59  Identities=22%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235         119 TEPQILFCDEPTTG--LDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH  178 (197)
Q Consensus       119 ~~p~llllDEPts~--LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~  178 (197)
                      .+.+++||||-..+  +.....+++.++|+. +.++.-+|++-++....+...||.|--|..
T Consensus        93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          93 PLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             CccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            35799999999864  345567788888865 345788999999999999999999987753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.39  E-value=0.022  Score=44.89  Aligned_cols=19  Identities=26%  Similarity=0.298  Sum_probs=16.6

Q ss_pred             CCCCCcHHHHHHHHhcCcC
Q psy4235           2 SPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~~   20 (197)
                      |+=||||||+++.|+-.+.
T Consensus        12 G~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_          12 GAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             ESSSSCTTHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            7889999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=0.036  Score=40.37  Aligned_cols=16  Identities=50%  Similarity=0.561  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|.-+||||||++.|.
T Consensus         9 iGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           9 IGHVDHGKTTLTAALT   24 (204)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHH
Confidence            5899999999999995

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.029  Score=45.05  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=27.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235         121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT  163 (197)
Q Consensus       121 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~  163 (197)
                      |-++++||--+-....   .+.+++.+.++.|..+++++..+.
T Consensus       277 ~v~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~  316 (433)
T d1e9ra_         277 RLWLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTS  316 (433)
T ss_dssp             CEEEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHH
T ss_pred             ceEEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHH
Confidence            3368889965533322   356677777777889999888753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.84  E-value=0.04  Score=41.92  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      ||-.-+|||||+++|++.
T Consensus         8 vG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           8 VGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHCC
Confidence            588899999999999964

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.77  E-value=0.052  Score=39.21  Aligned_cols=20  Identities=30%  Similarity=0.323  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|.=.+|||||++.|+|...
T Consensus        14 iGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          14 VGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             ECSTTSSHHHHHHHHHSCCC
T ss_pred             EEccCCcHHHHHHHHHhhhc
Confidence            47778999999999998543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.55  E-value=0.038  Score=42.16  Aligned_cols=16  Identities=50%  Similarity=0.638  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|+.|||||||...|.
T Consensus         8 iGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHH
Confidence            5899999999999994

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.55  E-value=0.027  Score=43.09  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeE-EEECCee
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGE-ILLNGCP   33 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~-i~~~g~~   33 (197)
                      .||+|+|||||+-.++.... ...|. |+||.+.
T Consensus        66 ~G~~~~GKT~l~l~~~~~~q-~~g~~~vyIDtE~   98 (269)
T d1mo6a1          66 YGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEH   98 (269)
T ss_dssp             ECSSSSSHHHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             ecCCCcHHHHHHHHHHHHHh-cCCCEEEEEECCc
Confidence            39999999999755553322 12333 5666655

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.058  Score=39.45  Aligned_cols=17  Identities=29%  Similarity=0.253  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .||+|||||||.-.++.
T Consensus        43 ~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          43 FGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             ECCTTCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999887763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.33  E-value=0.059  Score=39.60  Aligned_cols=15  Identities=20%  Similarity=0.149  Sum_probs=14.1

Q ss_pred             CCCCCcHHHHHHHHh
Q psy4235           2 SPSGAGKTTLLAALN   16 (197)
Q Consensus         2 G~nGaGKSTLl~~i~   16 (197)
                      |+-||||||..+.|.
T Consensus         8 G~igSGKsTva~~l~   22 (241)
T d1deka_           8 GVKRSGKDTTADFIM   22 (241)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999999995

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.27  E-value=0.054  Score=43.09  Aligned_cols=20  Identities=45%  Similarity=0.456  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      .||.|+||||+.+.|++.+.
T Consensus       160 ~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         160 KGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             ECSTTSSHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHHcC
Confidence            39999999999999998654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.02  E-value=0.052  Score=39.14  Aligned_cols=59  Identities=14%  Similarity=0.015  Sum_probs=36.3

Q ss_pred             hCCCEEEEeCCCCCC----CHHHHHHH-HHHHHHHHhCCCEEEEEecCCcc--------hHHhhcCeEEEEe
Q psy4235         119 TEPQILFCDEPTTGL----DSYSANNV-VNLLKQLACESRIVICAIHQPTS--------GVFEKFDTVSLLA  177 (197)
Q Consensus       119 ~~p~llllDEPts~L----D~~~~~~i-~~~l~~l~~~~~~iii~th~~~~--------~~~~~~d~v~~l~  177 (197)
                      .+|+++++|--+.-.    +.....++ ..+++..++.+.++++++|....        .....+|.++.+.
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            479999999665422    23333333 34444445568899888885431        2445788887774

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.057  Score=41.18  Aligned_cols=19  Identities=37%  Similarity=0.587  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||.|+|||+++.-++-.+
T Consensus        45 VG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHHH
Confidence            6999999999999998543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.97  E-value=0.053  Score=39.75  Aligned_cols=16  Identities=38%  Similarity=0.522  Sum_probs=13.2

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      .||+|||||||.--++
T Consensus        42 ~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          42 FGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            3899999999987554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.061  Score=39.04  Aligned_cols=19  Identities=32%  Similarity=0.711  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      +||+|.|||++..-++-.+
T Consensus        49 vG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             EecCCcccHHHHHHHHHHH
Confidence            6999999999999998544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.79  E-value=0.061  Score=42.08  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHhcCc
Q psy4235           1 MSPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~   19 (197)
                      .||.|+|||.|.+.|++..
T Consensus       129 ~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         129 TGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             ECSSSSCHHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHHh
Confidence            3999999999999999753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.66  E-value=0.065  Score=41.71  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI   34 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~   34 (197)
                      +||+|+|||.|.+.|+-.+......-+.++....
T Consensus        59 ~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          59 LGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             BSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             ECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            5999999999999998755322334556665443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.46  E-value=0.061  Score=38.95  Aligned_cols=17  Identities=24%  Similarity=0.278  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      .|++|+|||||.--++-
T Consensus        40 ~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          40 AGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            38999999999887763

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.29  E-value=0.056  Score=41.40  Aligned_cols=16  Identities=31%  Similarity=0.239  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|+.|||||||...|.
T Consensus        12 ~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2          12 AAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            5899999999999994

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.12  E-value=0.068  Score=40.34  Aligned_cols=40  Identities=15%  Similarity=0.111  Sum_probs=23.1

Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235         114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus       114 a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ......+.+++++||-- -+++.    ...+++.+...+..++++
T Consensus       200 ~~~~~~~~~~i~vDE~Q-D~~~~----~~~~l~~~~~~~~~~~~~  239 (306)
T d1uaaa1         200 RKRWQNKIRYLLVDEYQ-DTNTS----QYELVKLLVGSRARFTVV  239 (306)
T ss_dssp             HHHHHTTCSEEEESCGG-GCBHH----HHHHHHHHHTTTCCEEEE
T ss_pred             HHHHHHHhhHHHHHHHH-HhhHH----HHhhhhhcccCCCcceEe
Confidence            34455688999999963 23332    333444555555555554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.89  E-value=0.09  Score=37.94  Aligned_cols=18  Identities=44%  Similarity=0.492  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHhcC
Q psy4235           1 MSPSGAGKTTLLAALNKR   18 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~   18 (197)
                      +|.-.+|||||++.|.+.
T Consensus         9 iGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           9 IGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHHHH
Confidence            588899999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.084  Score=40.64  Aligned_cols=17  Identities=41%  Similarity=0.690  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      +|++|+|||||+..|+-
T Consensus        49 ~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          49 VAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EECSSSSHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            48999999999999974

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.24  E-value=0.099  Score=39.81  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=20.9

Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235         114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA  158 (197)
Q Consensus       114 a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~  158 (197)
                      ........+.++.||- --+++..    .++++.+...+..++++
T Consensus       210 ~~~~~~~~~~i~iDE~-QD~s~~q----~~~~~~l~~~~~~~~~~  249 (318)
T d1pjra1         210 LHYYQYKFQYIHIDEY-QDTNRAQ----YTLVKKLAERFQNICAV  249 (318)
T ss_dssp             HHHHHHHCSEEEESSG-GGCCHHH----HHHHHHHHTTTCCEEEE
T ss_pred             HHHHhhccchhhhHHH-HHHHHHH----HHHHHHHHHhhcceeee
Confidence            3334557889999993 3344432    33444444444444333

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.11  Score=40.27  Aligned_cols=11  Identities=64%  Similarity=0.733  Sum_probs=10.0

Q ss_pred             CCCCCcHHHHH
Q psy4235           2 SPSGAGKTTLL   12 (197)
Q Consensus         2 G~nGaGKSTLl   12 (197)
                      |.||+|||||-
T Consensus        21 GLSGTGKTTLs   31 (313)
T d2olra1          21 GLSGTGKTTLS   31 (313)
T ss_dssp             CSTTSSHHHHH
T ss_pred             ccCCCCcccce
Confidence            89999999975

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.83  E-value=0.22  Score=37.59  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             CCCCCCcHHHHHHHHhcCcCCCceeEE
Q psy4235           1 MSPSGAGKTTLLAALNKRVKGLVQGEI   27 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~~~~~G~i   27 (197)
                      .||.++||||++++|+.++.  ..|.+
T Consensus       110 ~G~~~tGKS~f~~~i~~~lg--~~~~~  134 (267)
T d1u0ja_         110 FGPATTGKTNIAEAIAHTVP--FYGCV  134 (267)
T ss_dssp             ECSTTSSHHHHHHHHHHHSS--CEEEC
T ss_pred             EcCCCCCHHHHHHHHHHHhc--chhhc
Confidence            49999999999999998763  45543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.18  E-value=0.11  Score=40.40  Aligned_cols=11  Identities=64%  Similarity=0.733  Sum_probs=9.9

Q ss_pred             CCCCCcHHHHH
Q psy4235           2 SPSGAGKTTLL   12 (197)
Q Consensus         2 G~nGaGKSTLl   12 (197)
                      |.||+|||||-
T Consensus        21 GLSGTGKTTLs   31 (318)
T d1j3ba1          21 GLSGTGKTTLS   31 (318)
T ss_dssp             ECTTSCHHHHT
T ss_pred             ccCCCCccccc
Confidence            89999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.98  E-value=0.17  Score=37.11  Aligned_cols=16  Identities=31%  Similarity=0.395  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHh
Q psy4235           1 MSPSGAGKTTLLAALN   16 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~   16 (197)
                      +|.-.+|||||++.|+
T Consensus        15 iGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          15 CGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5888999999999995

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.50  E-value=0.15  Score=37.30  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=25.4

Q ss_pred             HHHHHHHHhhCCCEEE----EeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235         110 RLALAVQLLTEPQILF----CDEPTTGLDSYSANNVVNLLKQLA  149 (197)
Q Consensus       110 rv~ia~al~~~p~lll----lDEPts~LD~~~~~~i~~~l~~l~  149 (197)
                      .+.++.++ ..+++++    +|.+...-|....+.+.+.+..+.
T Consensus       132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~  174 (224)
T d1jnya3         132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFM  174 (224)
T ss_dssp             HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHH
Confidence            45555544 5667777    788777777766666666666653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.47  E-value=0.18  Score=36.27  Aligned_cols=55  Identities=7%  Similarity=0.025  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL  176 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l  176 (197)
                      +.+++++|| .-.|...++..+++.|.+... +..+|++|+++......+-.|...+
T Consensus        79 ~~KviIId~-ad~l~~~aqNaLLK~LEEPp~-~t~fiLit~~~~~ll~TI~SRC~~i  133 (198)
T d2gnoa2          79 TRKYVIVHD-CERMTQQAANAFLKALEEPPE-YAVIVLNTRRWHYLLPTIKSRVFRV  133 (198)
T ss_dssp             SSEEEEETT-GGGBCHHHHHHTHHHHHSCCT-TEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CCEEEEEeC-ccccchhhhhHHHHHHhCCCC-CceeeeccCChhhCHHHHhcceEEE
Confidence            468999999 466788888888888877543 5667777877654444444444333

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.39  E-value=0.16  Score=39.60  Aligned_cols=11  Identities=64%  Similarity=0.733  Sum_probs=10.3

Q ss_pred             CCCCCcHHHHH
Q psy4235           2 SPSGAGKTTLL   12 (197)
Q Consensus         2 G~nGaGKSTLl   12 (197)
                      |-||+|||||-
T Consensus        21 GLSGTGKTTLs   31 (323)
T d1ii2a1          21 GLSGTGKTTLS   31 (323)
T ss_dssp             CCTTSSHHHHH
T ss_pred             ccCCCCcccce
Confidence            89999999996

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.02  E-value=0.26  Score=32.77  Aligned_cols=18  Identities=17%  Similarity=0.108  Sum_probs=15.1

Q ss_pred             CCCCCcHHHHHHHHhcCc
Q psy4235           2 SPSGAGKTTLLAALNKRV   19 (197)
Q Consensus         2 G~nGaGKSTLl~~i~g~~   19 (197)
                      |-+|||||||-+.|.-.+
T Consensus        13 g~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3          13 NSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             TTCCSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            789999999999995433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.29  E-value=0.18  Score=40.33  Aligned_cols=17  Identities=29%  Similarity=0.642  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHhc
Q psy4235           1 MSPSGAGKTTLLAALNK   17 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g   17 (197)
                      ||++|.|||+++.-++-
T Consensus        49 vG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          49 IGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999987763

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.97  E-value=0.21  Score=39.18  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHh---cCcCCCceeEEE
Q psy4235           1 MSPSGAGKTTLLAALN---KRVKGLVQGEIL   28 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~---g~~~~~~~G~i~   28 (197)
                      +|.-|+|||||+..|.   |.+.....|+..
T Consensus        23 iGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~   53 (341)
T d1n0ua2          23 IAHVDHGKSTLTDSLVQRAGIISAAKAGEAR   53 (341)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC-------
T ss_pred             EeCCCCcHHHHHHHHHHHCCCcccccccccc
Confidence            5889999999999994   554422344433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=81.81  E-value=0.22  Score=37.49  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHhcCcC
Q psy4235           1 MSPSGAGKTTLLAALNKRVK   20 (197)
Q Consensus         1 iG~nGaGKSTLl~~i~g~~~   20 (197)
                      +|-.-+|||||+|.|.|.-.
T Consensus       118 vG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         118 IGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             EESTTSSHHHHHHHHHTSCC
T ss_pred             EecCccchhhhhhhhhccce
Confidence            47788999999999998643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.92  E-value=0.16  Score=33.64  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235         117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES  152 (197)
Q Consensus       117 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~  152 (197)
                      ...+-+++|+||-= -+|..+...+..+++.+...+
T Consensus        91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~~  125 (136)
T d1a1va1          91 SGGAYDIIICDECH-STDATSILGIGTVLDQAETAG  125 (136)
T ss_dssp             GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred             hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHHHCC
Confidence            34677999999986 467777667777776654443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=80.38  E-value=0.36  Score=37.95  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235         120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI  159 (197)
Q Consensus       120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t  159 (197)
                      +.+++|+||-.- +|.....   .++..+ ..+..+|++-
T Consensus       261 ~~d~lIIDEaSm-v~~~l~~---~ll~~~-~~~~~lILvG  295 (359)
T d1w36d1         261 HLDVLVVDEASM-IDLPMMS---RLIDAL-PDHARVIFLG  295 (359)
T ss_dssp             SCSEEEECSGGG-CBHHHHH---HHHHTC-CTTCEEEEEE
T ss_pred             ccceeeehhhhc-cCHHHHH---HHHHHh-cCCCEEEEEC
Confidence            568999999744 6654433   333333 2345566654