Psyllid ID: psy424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MTPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccEEEcccccccEEccEEEEHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHEEccccccccccccccccccccEEEEEcccccccEccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtpapasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwryytddspgikvgpvPVLVMSLLFIASVFMLHIWgkytrsss
Flexible Loop (DISEMBL)
mtpapasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Low Complexity Region (SEG)
MTPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Disordered region (IsUnstruct)
*****************************************************GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY*****
Disordered Region (DISOPRED)
*********************************************************YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS**
Disordered Region (DISEMBL)
************************************************GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Disordered Region (DISPRO)
****************************************************GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q5RB31	96	Protein transport protein	yes	N/A	0.938	0.958	0.673	9e-26
P60468	96	Protein transport protein	yes	N/A	0.938	0.958	0.673	9e-26
P60467	96	Protein transport protein	yes	N/A	0.938	0.958	0.673	9e-26
Q9CQS8	96	Protein transport protein	yes	N/A	0.908	0.927	0.670	2e-25
Q54YR4	61	Protein transport protein	yes	N/A	0.561	0.901	0.492	2e-10
Q9HFC7	91	Protein transport protein	yes	N/A	0.755	0.813	0.410	1e-07
O43002	102	Protein transport protein	yes	N/A	0.887	0.852	0.346	2e-07
P38389	82	Protein transport protein	no	N/A	0.775	0.926	0.414	3e-07
P52871	88	Protein transport protein	yes	N/A	0.744	0.829	0.312	0.0001
Q8J2P4	88	Protein transport protein	yes	N/A	0.734	0.818	0.303	0.0002

>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 3  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
          P P S T+VGS  RSP       R  GSTVRQRK  +     + RT  AG+GGMWR+YT+
Sbjct: 4  PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.
Pongo abelii (taxid: 9601)

>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 3  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
          P P S T+VGS  RSP       R  GSTVRQRK  +     + RT  AG+GGMWR+YT+
Sbjct: 4  PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris GN=SEC61B PE=1 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 3  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
          P P S T+VGS  RSP       R  GSTVRQRK  +     + RT  AG+GGMWR+YT+
Sbjct: 4  PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 69/91 (75%), Gaps = 2/91 (2%)

Query: 7  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 65
          S T+VGS  RSP       R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7  SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65

Query: 66 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          +KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Mus musculus (taxid: 10090)

>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 8/63 (12%)

Query: 34 QRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 93
          QR P T           G   M ++Y++D+ G+KVGP  VL MSL+FIA V +LHI GKY
Sbjct: 7  QRAPATV--------NKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKY 58

Query: 94 TRS 96
          TRS
Sbjct: 59 TRS 61

Necessary for protein translocation in the endoplasmic reticulum.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 21 GGPGGRPTGSTVRQRKPTTT----TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVM 76
          GGP  +       QR+        T+ RS   G  S  M + YTD+S G+KV PV V+V+
Sbjct: 9  GGPAAQMKRRNNAQRQEAKASQRPTSTRSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVL 68

Query: 77 SLLFIASVFMLHIWGKYT 94
          SL FI SV  LHI  K +
Sbjct: 69 SLGFIFSVVALHILAKVS 86

Necessary for protein translocation in the endoplasmic reticulum.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 7  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGG---------MWR 57
          SST      ++  A  PGG    S +R+R         SN   AG+           + +
Sbjct: 2  SSTKASGSVKNSAASAPGG--PKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLK 59

Query: 58 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95
           YTD++ G KV PV V+V+S+ FIASVF+LHI  +  +
Sbjct: 60 LYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILK 97

Necessary for protein translocation in the endoplasmic reticulum.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 11 VGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGP 70
          VGSG  +P+ G        +++R+RKPT+        +G  +G M ++YTDD+PG+K+ P
Sbjct: 2  VGSG--APQRGSAAAT---ASMRRRKPTSGAGGGGA-SGGAAGSMLQFYTDDAPGLKISP 55

Query: 71 VPVLVMSLLFIASVFMLHIWGK 92
            VL+MS+ FIA V +LH+ GK
Sbjct: 56 NVVLIMSIGFIAFVAVLHVMGK 77

Necessary for protein translocation in the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 23 PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 75
          PGG      R    ++++++   T T+ R    G  S  + + YTD++ G +V  + VL 
Sbjct: 7  PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66

Query: 76 MSLLFIASVFMLHIWGKYTR 95
          +S+ FI SV  LH+  K+T 
Sbjct: 67 LSVGFIFSVIALHLLTKFTH 86

Part of the Ssh1 complex, which probably is the major component of a channel-forming translocon complex that may function exclusively in the cotranslational pathway of protein endoplasmic reticulum (ER) import.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 23 PGGRPT-----GSTVRQRKPTTTTAARSNRTGAG--SGGMWRYYTDDSPGIKVGPVPVLV 75
          PGG+ T      + +++ K    T A   + G G  S  + + YTD++ G++V P+ VL 
Sbjct: 6  PGGQRTLQKRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVVLF 65

Query: 76 MSLLFIASVFMLHIWGKYT 94
          +++ F+ SV  LH+  K +
Sbjct: 66 LAVAFVFSVVALHVVAKVS 84

Necessary for protein translocation in the endoplasmic reticulum.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
195150464	100	GL11450 [Drosophila persimilis] gi|19845	0.928	0.91	0.715	1e-29
91083317	94	PREDICTED: similar to AGAP011504-PA [Tri	0.887	0.925	0.75	1e-29
194757028	100	GF11335 [Drosophila ananassae] gi|190622	0.928	0.91	0.715	2e-29
195429427	100	GK19628 [Drosophila willistoni] gi|19415	0.928	0.91	0.705	3e-29
149898803	96	Sec61 protein translocation complex beta	0.959	0.979	0.778	2e-28
156540298	95	PREDICTED: protein transport protein Sec	0.959	0.989	0.712	2e-28
112983408	97	transport protein Sec61 beta subunit [Bo	0.959	0.969	0.770	3e-28
322795695	159	hypothetical protein SINV_05925 [Solenop	0.938	0.578	0.75	5e-28
195122970	109	GI20777 [Drosophila mojavensis] gi|19391	0.928	0.834	0.762	5e-28
357612399	97	transport protein Sec61 beta subunit [Da	0.959	0.969	0.791	7e-28

>gi|195150464|ref|XP_002016174.1| GL11450 [Drosophila persimilis] gi|198457263|ref|XP_001360608.2| GA10096 [Drosophila pseudoobscura pseudoobscura] gi|194110021|gb|EDW32064.1| GL11450 [Drosophila persimilis] gi|198135920|gb|EAL25183.2| GA10096 [Drosophila pseudoobscura pseudoobscura]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 11/102 (10%)

Query: 3   PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 54
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++T A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTSSTTAARSRAPGGAGTGG 58

Query: 55  MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083317|ref|XP_974792.1| PREDICTED: similar to AGAP011504-PA [Tribolium castaneum] gi|270006931|gb|EFA03379.1| hypothetical protein TcasGA2_TC013365 [Tribolium castaneum]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 80/100 (80%), Gaps = 13/100 (13%)

Query: 3  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMW 56
          PAPASST+VGSG RSP      ++GG      G TVRQRK T+   AR N TGAGSGGMW
Sbjct: 2  PAPASSTTVGSGGRSPSKTVAPRSGG------GGTVRQRKTTSAAPARRN-TGAGSGGMW 54

Query: 57 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          R+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 55 RFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 94

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757028|ref|XP_001960767.1| GF11335 [Drosophila ananassae] gi|190622065|gb|EDV37589.1| GF11335 [Drosophila ananassae]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 11/102 (10%)

Query: 3   PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 54
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++T A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSSGAGG---GSTLKQRKTTSSTTAARSRAPGGAGTGG 58

Query: 55  MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429427|ref|XP_002062764.1| GK19628 [Drosophila willistoni] gi|194158849|gb|EDW73750.1| GK19628 [Drosophila willistoni]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 82/102 (80%), Gaps = 11/102 (10%)

Query: 3   PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 54
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++  A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTSSNTAARSRAPGGAGTGG 58

Query: 55  MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898803|gb|ABR27863.1| Sec61 protein translocation complex beta subunit [Triatoma infestans] gi|344190604|gb|AEM97988.1| Sec61 protein translocation complex beta subunit [Dipetalogaster maximus]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 3  PAPASSTSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTD 61
          PA  SST+VGSG+RSP K   P       TVRQRK TTTTAARS  T A SGGMWR+YTD
Sbjct: 2  PAAPSSTAVGSGSRSPAKMAAPRSSAGSGTVRQRKTTTTTAARSRNTAANSGGMWRFYTD 61

Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540298|ref|XP_001599008.1| PREDICTED: protein transport protein Sec61 subunit beta-like [Nasonia vitripennis]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 72/94 (76%)

Query: 3  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDD 62
          PA  SSTSVG+ +RSP          G TVRQRK    T+AR+  TG  SGGMWR+YTDD
Sbjct: 2  PAAPSSTSVGAASRSPSKAVAPRAGLGGTVRQRKAAPATSARNRNTGTNSGGMWRFYTDD 61

Query: 63 SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 95

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983408|ref|NP_001037632.1| transport protein Sec61 beta subunit [Bombyx mori] gi|87248599|gb|ABD36352.1| transport protein Sec61 beta protein [Bombyx mori] gi|107953794|gb|ABF85698.1| transport protein Sec61 beta subunit [Bombyx mori]

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 80/96 (83%), Gaps = 2/96 (2%)

Query: 3  PAPASSTSVGSGTRSPKAGGPGGR-PTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYT 60
          P   S+TSVGSG+RSP     G R  +GSTVRQRK TTTT A  NR TGAGSGGMWR+YT
Sbjct: 2  PQSPSATSVGSGSRSPTKASAGPRTASGSTVRQRKSTTTTTAARNRSTGAGSGGMWRFYT 61

Query: 61 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DDSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 62 DDSPGVKVGPVPVLVMSLLFIASVFMLHIWGKYTRA 97

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795695|gb|EFZ18374.1| hypothetical protein SINV_05925 [Solenopsis invicta]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 78/96 (81%), Gaps = 4/96 (4%)

Query: 3   PAPASSTSVGSGTRSP-KAGGPGGRPTGS-TVRQRKPTTTTAARSNRTGAGSGGMWRYYT 60
           PA  S+TSVGS  RSP KA  P  R  GS TVRQRK T T++AR+  TG  SGGMWR+YT
Sbjct: 66  PAAPSATSVGSVGRSPSKAIAP--RTGGSGTVRQRKTTVTSSARNRNTGTSSGGMWRFYT 123

Query: 61  DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
           DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 124 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRN 159

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122970|ref|XP_002005983.1| GI20777 [Drosophila mojavensis] gi|193911051|gb|EDW09918.1| GI20777 [Drosophila mojavensis]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 84/101 (83%), Gaps = 10/101 (9%)

Query: 3   PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRTG-AGSGGM 55
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK TTTTAARS   G AG+GGM
Sbjct: 12  PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTTTTAARSRAPGGAGTGGM 68

Query: 56  WRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
           WR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 69  WRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 109

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612399|gb|EHJ67968.1| transport protein Sec61 beta subunit [Danaus plexippus]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 80/96 (83%), Gaps = 2/96 (2%)

Query: 3  PAPASSTSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYT 60
          PA  SSTSVGSG RSP KA G     TG TVRQRK TTTT A  NR TGAG+GGMWR+YT
Sbjct: 2  PAAPSSTSVGSGGRSPTKATGVPRSSTGGTVRQRKSTTTTTAARNRSTGAGTGGMWRFYT 61

Query: 61 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DDSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 62 DDSPGVKVGPVPVLVMSLLFIASVFMLHIWGKYTRA 97

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0010638	100	Sec61beta "Sec61beta" [Drosoph	0.959	0.94	0.777	2e-33
UNIPROTKB|Q2NKT5	96	SEC61B "Sec61 beta subunit" [B	0.938	0.958	0.684	3.1e-28
ZFIN|ZDB-GENE-040718-260	97	sec61b "Sec61 beta subunit" [D	0.938	0.948	0.653	5e-28
RGD|1304997	96	Sec61b "Sec61 beta subunit" [R	0.938	0.958	0.673	6.4e-28
UNIPROTKB|F1NWX7	96	SEC61B "Uncharacterized protei	0.928	0.947	0.677	8.2e-28
UNIPROTKB|P60467	96	SEC61B "Protein transport prot	0.938	0.958	0.673	8.2e-28
UNIPROTKB|P60468	96	SEC61B "Protein transport prot	0.938	0.958	0.673	8.2e-28
UNIPROTKB|F2Z5P0	96	SEC61B "Uncharacterized protei	0.938	0.958	0.673	8.2e-28
UNIPROTKB|Q5RB31	96	SEC61B "Protein transport prot	0.938	0.958	0.673	8.2e-28
MGI|MGI:1913462	96	Sec61b "Sec61 beta subunit" [M	0.938	0.958	0.663	1.7e-27

FB|FBgn0010638 Sec61beta "Sec61beta" [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 77/99 (77%), Positives = 82/99 (82%)

Query:     3 PAPASSTSVGSGTRSP-KAGGP--GGRPTGSTVRQRKPTT-TTAARSNRTG-AGSGGMWR 57
             PAPASSTSVGSG+RSP K   P   G   GST++QRK TT TTAARS   G AG+GGMWR
Sbjct:     2 PAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMWR 61

Query:    58 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             +YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct:    62 FYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0005784 "Sec61 translocon complex" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010507 "negative regulation of autophagy" evidence=IMP

UNIPROTKB|Q2NKT5 SEC61B "Sec61 beta subunit" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 65/95 (68%), Positives = 72/95 (75%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             PAP S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PAP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IDA

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

ZFIN|ZDB-GENE-040718-260 sec61b "Sec61 beta subunit" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 64/98 (65%), Positives = 78/98 (79%)

Query:     3 PAPASS-TSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGGMWRY 58
             P PA+S T+VG+ +RSP K   P  R  G++ RQRK T+++A    R+   AG+GGMWR+
Sbjct:     2 PGPAASATNVGASSRSPSKTVAP--RTAGTSARQRKATSSSARSGGRSTASAGTGGMWRF 59

Query:    59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             YT+DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    60 YTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97

GO:0005575 "cellular_component" evidence=ND

RGD|1304997 Sec61b "Sec61 beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 64/95 (67%), Positives = 72/95 (75%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S+T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SATNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA;ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0048408 "epidermal growth factor binding" evidence=IEA;ISO

UNIPROTKB|F1NWX7 SEC61B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 65/96 (67%), Positives = 75/96 (78%)

Query:     3 PAPASSTSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYT 60
             P+P S+T+VG+  RSP KA  P  R  GSTVRQRK  +  T +    T  G+GGMWR+YT
Sbjct:     4 PSP-SATNVGTSGRSPSKAVAP--RAAGSTVRQRKNASCGTRSAGRATSTGTGGMWRFYT 60

Query:    61 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             +DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    61 EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0048408 "epidermal growth factor binding" evidence=IEA

UNIPROTKB|P60467 SEC61B "Protein transport protein Sec61 subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P60468 SEC61B "Protein transport protein Sec61 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0048408 "epidermal growth factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=NAS

GO:0000060 "protein import into nucleus, translocation" evidence=IMP

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5P0 SEC61B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

UNIPROTKB|Q5RB31 SEC61B "Protein transport protein Sec61 subunit beta" [Pongo abelii (taxid:9601)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

MGI|MGI:1913462 Sec61b "Sec61 beta subunit" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 63/95 (66%), Positives = 71/95 (74%)

Query:     3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 61
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:    62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
             DSPG+KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO

GO:0043022 "ribosome binding" evidence=IDA

GO:0048408 "epidermal growth factor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RB31	SC61B_PONAB	No assigned EC number	0.6736	0.9387	0.9583	yes	N/A
O43002	SC61B_SCHPO	No assigned EC number	0.3469	0.8877	0.8529	yes	N/A
Q8J2P4	SC61B_KLULA	No assigned EC number	0.3037	0.7346	0.8181	yes	N/A
P60467	SC61B_CANFA	No assigned EC number	0.6736	0.9387	0.9583	yes	N/A
P52871	SC6B2_YEAST	No assigned EC number	0.3125	0.7448	0.8295	yes	N/A
Q9HFC7	SC61B_YARLI	No assigned EC number	0.4102	0.7551	0.8131	yes	N/A
Q9CQS8	SC61B_MOUSE	No assigned EC number	0.6703	0.9081	0.9270	yes	N/A
P60468	SC61B_HUMAN	No assigned EC number	0.6736	0.9387	0.9583	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam03911	41	pfam03911, Sec61_beta, Sec61beta family	6e-20
PRK01253	54	PRK01253, PRK01253, preprotein translocase subunit	1e-05

>gnl|CDD|202805 pfam03911, Sec61_beta, Sec61beta family

 Score = 74.9 bits (185), Expect = 6e-20
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 52 SGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
          S G+ R+Y +++PGIKV P  VLV+SL FIASV  LHI G
Sbjct: 2  SAGLLRFYEEEAPGIKVDPKVVLVLSLGFIASVIALHILG 41

This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane. Length = 41

>gnl|CDD|179263 PRK01253, PRK01253, preprotein translocase subunit SecG; Reviewed

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 42 AARSNRTGAGSG-GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHI 89
            +    G  S  G+ RY+ +++  IK+ P  V+ + L     V +L+ 
Sbjct: 2  KKKKEGGGLMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNA 50

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG3457|consensus	88		99.98
PF03911	41	Sec61_beta: Sec61beta family; InterPro: IPR005609	99.76
PRK01253	54	preprotein translocase subunit SecG; Reviewed	99.65
COG4023	57	SBH1 Preprotein translocase subunit Sec61beta [Int	98.51

>KOG3457|consensus

Probab=99.98  E-value=4.4e-33  Score=190.89  Aligned_cols=70  Identities=56%  Similarity=0.928  Sum_probs=62.2

Q ss_pred             CCcccccccCC--C---CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhccccC
Q psy424           28 TGSTVRQRKPT--T---TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS   97 (98)
Q Consensus        28 ~~~~~r~R~~~--~---~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~~~~   97 (98)
                      ..+++|||+..  .   +.++|+++.++++++||||||||++||||+|++||||||+||++||+||||+||++..
T Consensus        13 ~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~   87 (88)
T KOG3457|consen   13 ATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK   87 (88)
T ss_pred             hHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence            46668899866  2   4567777778899999999999999999999999999999999999999999999865

>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG

Probab=99.76  E-value=8.9e-20  Score=109.33  Aligned_cols=41  Identities=51%  Similarity=1.014  Sum_probs=25.4

Q ss_pred             CCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424           51 GSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG   91 (98)
Q Consensus        51 ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g   91 (98)
                      |++||+|||+||++|+|++|++||+++++||++|++||||+
T Consensus         1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~   41 (41)
T PF03911_consen    1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA   41 (41)
T ss_dssp             ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred             CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence            57899999999999999999999999999999999999985

This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....

>PRK01253 preprotein translocase subunit SecG; Reviewed

Probab=99.65  E-value=7.3e-17  Score=102.00  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             CCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhh
Q psy424           49 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK   92 (98)
Q Consensus        49 g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK   92 (98)
                      .-+++||+||||||++|+||+|.+||+++++||++|++||++..
T Consensus        10 ~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~~   53 (54)
T PRK01253         10 LMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALFP   53 (54)
T ss_pred             CcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhcC
Confidence            45789999999999999999999999999999999999999853

>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]

Probab=98.51  E-value=7.3e-08  Score=62.09  Aligned_cols=40  Identities=23%  Similarity=0.484  Sum_probs=37.0

Q ss_pred             CccceeeeecCCCc-eeEcceeeehhhHHHHHHHHHHHHhh
Q psy424           52 SGGMWRYYTDDSPG-IKVGPVPVLVMSLLFIASVFMLHIWG   91 (98)
Q Consensus        52 s~gmlrfYtdds~G-lkv~P~~VLv~Sl~FI~~V~lLHI~g   91 (98)
                      +.|++|||+||..+ +|+||..|+.+++.|++.|++-||+.
T Consensus        15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~   55 (57)
T COG4023          15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFA   55 (57)
T ss_pred             ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhc
Confidence            56899999988876 99999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2wwb_C	96	Cryo-Em Structure Of The Mammalian Sec61 Complex Bo		7e-27
2ww9_C	87	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		1e-05

>pdb|2WWB|C Chain C, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 96

Iteration: 1
 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Query: 3  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
          P P S T+VGS  RSP       R  GSTVRQRK  +     + RT  AG+GGMWR+YT+
Sbjct: 4  PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61
Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

>pdb|2WW9|C Chain C, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 87

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 23 PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 75
          PGG      R    ++++++   T T+ R    G  S  + + YTD++ G +V  + VL 
Sbjct: 7  PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66
Query: 76 MSLLFIASVFMLHIWGKYTR 95
          +S+ FI SV  LH+  K+T 
Sbjct: 67 LSVGFIFSVIALHLLTKFTH 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	2e-19
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	4e-17

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 96

 Score = 74.8 bits (183), Expect = 2e-19
 Identities = 54/96 (56%), Positives = 65/96 (67%)

Query: 1  MTPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYT 60
          M     S T+VGS  RSP           +  +++  +  T +    T AG+GGMWR+YT
Sbjct: 1  MPGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYT 60

Query: 61 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
          +DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 61 EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C Length = 87

 Score = 68.7 bits (167), Expect = 4e-17
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 26 RPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVF 85
          R   S   ++   T T+ R    G  S  + + YTD++ G +V  + VL +S+ FI SV 
Sbjct: 17 RQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVI 76

Query: 86 MLHIWGKYT 94
           LH+  K+T
Sbjct: 77 ALHLLTKFT 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	100.0
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	99.92
1rh5_C	53	Secbeta; protein translocation, SECY, membrane pro	99.62

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=100.00  E-value=5.2e-36  Score=207.06  Aligned_cols=94  Identities=68%  Similarity=1.127  Sum_probs=35.0

Q ss_pred             CCCC-CCCCccCCCCCCCCCCCCCCCCCCcccccccCCC-CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHH
Q psy424            2 TPAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLL   79 (98)
Q Consensus         2 mp~~-~sst~vg~~~~sp~~~~~~~~~~~~~~r~R~~~~-~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~   79 (98)
                      ||++ +|+|+|++++++|.+.+++ +++++++||||.++ .++.+.++.+++++|||||||||++||||+|++||+|+|+
T Consensus         1 m~~~~~s~t~vg~~~~~p~~~a~~-~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~   79 (96)
T 2wwb_C            1 MPGPTPSGTNVGSSGRSPSKAVAA-RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLL   79 (96)
T ss_dssp             -------------------------------------------------------------CCSCCCCCSSCSHHHHHHH
T ss_pred             CCCcccCccccccCCCCCCccccc-ccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEECCEEehhhHHH
Confidence            7876 7999999999999887765 33566799999765 4456667888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccc
Q psy424           80 FIASVFMLHIWGKYTRS   96 (98)
Q Consensus        80 FI~~V~lLHI~gK~~~~   96 (98)
                      ||++||+||||+||+|.
T Consensus        80 Fi~~Vi~Lhi~~K~~r~   96 (96)
T 2wwb_C           80 FIASVFMLHIWGKYTRS   96 (96)
T ss_dssp             HHHHHHHHSCSSSCCCC
T ss_pred             HHHHHHHHHHhhhhccC
Confidence            99999999999999874

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C

Probab=99.92  E-value=6e-27  Score=159.43  Aligned_cols=55  Identities=36%  Similarity=0.603  Sum_probs=21.0

Q ss_pred             CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhcc
Q psy424           40 TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT   94 (98)
Q Consensus        40 ~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~   94 (98)
                      +.++++++.+++++||||||+||++||||+|++||+|+|+||++||+||||+||+
T Consensus        31 ~~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~   85 (87)
T 2ww9_C           31 PTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT   85 (87)
T ss_dssp             ---------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence            4456677888899999999999999999999999999999999999999999997

>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C

Probab=99.62  E-value=6.3e-17  Score=101.13  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             CCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHh
Q psy424           49 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW   90 (98)
Q Consensus        49 g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~   90 (98)
                      ..+++||+|||+||++|+||+|++||+++++||++|++||+.
T Consensus         9 ~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~   50 (53)
T 1rh5_C            9 LATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG   50 (53)
T ss_dssp             ------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00