Psyllid ID: psy4254

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MIREKFGEGPRRRYQVRSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Secondary Structure (PSIPRED)
cccccccccccccEEEccccEEEEEcHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHEEcc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccEEEccccccccccccEEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHc
Coil and Loop (DISEMBL)
mirekfgegprrryqvrsppltkicdcggvvtNYTLAYKLampihratplnsAVRTAQILLMLVICFLLAWTPYAVITFIGqfgdaslitpwvsatPAIFAKFLVDSRIYILVL
Flexible Loop (DISEMBL)
mirekfgegprrryqvrsppltkicdcggVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Low Complexity Region (SEG)
MIREKFGEGPRRRYQVRSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Disordered region (IsUnstruct)
*******************PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILV*
Disordered Region (DISOPRED)
**********R*RYQVRSPPLTKICDCGGVVTNYTL********************AQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Disordered Region (DISEMBL)
************RYQVRSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Disordered Region (DISPRO)
******GEGPRRRYQVRSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIREKFGEGPRRRYQVRSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLVDSRIYILVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q4R1I4	706	Melanopsin OS=Branchiosto	N/A	N/A	0.456	0.073	0.403	4e-07
P90680	377	Opsin, blue-sensitive OS=	yes	N/A	0.526	0.159	0.419	1e-06
P91657	382	Opsin Rh5 OS=Drosophila m	yes	N/A	0.5	0.149	0.421	2e-06
P31356	448	Rhodopsin OS=Todarodes pa	N/A	N/A	0.456	0.116	0.423	2e-06
O16005	464	Rhodopsin OS=Sepia offici	N/A	N/A	0.456	0.112	0.384	2e-06
P24603	452	Rhodopsin OS=Loligo forbe	N/A	N/A	0.456	0.115	0.403	3e-06
P09241	455	Rhodopsin OS=Enteroctopus	N/A	N/A	0.456	0.114	0.365	4e-06
O15973	499	Rhodopsin, GQ-coupled OS=	N/A	N/A	0.447	0.102	0.431	5e-06
Q26495	380	Opsin-2 OS=Schistocerca g	N/A	N/A	0.526	0.157	0.370	2e-05
Q9UHM6	478	Melanopsin OS=Homo sapien	yes	N/A	0.464	0.110	0.358	2e-05

>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 37/52 (71%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
            + ++TA+I  +++  F+ AWTPYAV++ +G  G   L+TP++ + PA+FAK
Sbjct: 307 KNEIKTAKIAFIVISLFMSAWTPYAVVSALGTLGYQDLVTPYLQSIPAMFAK 358

Photoreceptor implicated in non-image-forming responses to light. Photoisomerizes covalently bound all-trans retinal back to 11-cis retinal. Most likely coupled to the G(q) signaling cascade.
Branchiostoma belcheri (taxid: 7741)

>sp|P90680|OPSB_APIME Opsin, blue-sensitive OS=Apis mellifera GN=BLOP PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSR 108
           ++ VR A++   +   FLLAWTPYA +  IG +G+  L+TP  +  PA+FAK +  +D  
Sbjct: 275 SAEVRIAKVAFTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPW 334

Query: 109 IY 110
           IY
Sbjct: 335 IY 336

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 46  RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
            A  ++  +R A+  L++ + F+LAWTPY+V+  IG FG+  LITP+VS  P +  K
Sbjct: 266 NADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACK 322

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|P31356|OPSD_TODPA Rhodopsin OS=Todarodes pacificus GN=RHO PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           N+ +R A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAK 305

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Todarodes pacificus (taxid: 6637)

>sp|O16005|OPSD_SEPOF Rhodopsin OS=Sepia officinalis GN=RHO PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           ++ ++ A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 254 SAEMKLAKISIVIVTQFLLSWSPYAVVALLAQFGPIEWVTPYAAQLPVMFAK 305

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Sepia officinalis (taxid: 6610)

>sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           N+ ++ A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 254 NAEMKLAKISIVIVTQFLLSWSPYAVVALLAQFGPIEWVTPYAAQLPVMFAK 305

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Loligo forbesi (taxid: 6618)

>sp|P09241|OPSD_ENTDO Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 37/52 (71%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           ++ ++ A+I ++++  F+L+W+PYA+I  + QFG A  +TP+ +  P +FAK
Sbjct: 255 SAEMKLAKISMVIITQFMLSWSPYAIIALLAQFGPAEWVTPYAAELPVLFAK 306

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Enteroctopus dofleini (taxid: 267067)

>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 52  SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           S +R ++I + +   F+++W+PYA+I  I QFG A  ITP VS  P + AK
Sbjct: 272 SELRISKIAMTVTCLFIISWSPYAIIALIAQFGPAHWITPLVSELPMMLAK 322

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Mizuhopecten yessoensis (taxid: 6573)

>sp|Q26495|OPS2_SCHGR Opsin-2 OS=Schistocerca gregaria GN=Lo2 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSR 108
           ++ +R A++ L +   FL +WTPYAV+  IG FG+ + +TP  +  PA+ AK +  +D  
Sbjct: 272 SAEIRIAKVALTIFFLFLCSWTPYAVVAMIGAFGNRAALTPLSTMIPAVTAKIVSCIDPW 331

Query: 109 IY 110
           +Y
Sbjct: 332 VY 333

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Schistocerca gregaria (taxid: 7010)

>sp|Q9UHM6|OPN4_HUMAN Melanopsin OS=Homo sapiens GN=OPN4 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 37/53 (69%)

Query: 50  LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           L S  + A+I+L++++ F+L+W PY+ +  +   G A ++TP++S+ PA+ AK
Sbjct: 288 LQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAK 340

Photoreceptor required for regulation of circadian rhythm. Contributes to pupillar reflex and other non-image forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
328721502	492	PREDICTED: rhodopsin, GQ-coupled-like is	0.570	0.132	0.529	4e-09
405970247	317	Rhodopsin, partial [Crassostrea gigas]	0.429	0.154	0.571	3e-08
321473063	625	arthropsin7 [Daphnia pulex]	0.473	0.086	0.509	1e-07
391358332	790	onychopsin [Eoperipatus sp. LH-2012]	0.429	0.062	0.510	5e-07
321473064	536	arthropsin8 [Daphnia pulex]	0.447	0.095	0.5	5e-07
422001797	381	B-sensitive opsin [Eurema hecabe]	0.429	0.128	0.530	6e-07
422001813	380	B-sensitive opsin [Gonepteryx rhamni]	0.429	0.128	0.530	6e-07
422001807	332	B-sensitive opsin, partial [Eurema laeta	0.429	0.147	0.530	6e-07
422001789	381	B-sensitive opsin [Colias erate]	0.429	0.128	0.510	9e-07
392499153	772	onychopsin [Epiperipatus cf. isthmicola	0.429	0.063	0.489	1e-06

>gi|328721502|ref|XP_003247319.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 1 [Acyrthosiphon pisum] gi|328721504|ref|XP_003247320.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 2 [Acyrthosiphon pisum] gi|328721506|ref|XP_003247321.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 3 [Acyrthosiphon pisum]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 38  YKLAMPIHR---ATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVS 94
           Y+LA+ + R   A P+ SA+RT+ I+L+L+  F+ +WTPYAV+TF+GQFG  + I PW+S
Sbjct: 251 YRLALNVARRGQAVPIRSALRTSYIILILIGLFIASWTPYAVVTFVGQFGSQTKIEPWIS 310

Query: 95  ATPAIFAK 102
           A PAI AK
Sbjct: 311 ALPAICAK 318

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405970247|gb|EKC35173.1| Rhodopsin, partial [Crassostrea gigas]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           V+TA+I L+++  F L+WTPYAV+  IG FGDAS+ITP  S  P +FAK
Sbjct: 198 VKTAKISLVIISIFCLSWTPYAVVAIIGNFGDASVITPLASTIPGVFAK 246

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|321473063|gb|EFX84031.1| arthropsin7 [Daphnia pulex]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 52  SAVRTAQILLMLVICFLLAWTPYAVITFIGQFG-DASLITPWVSATPAIFAKFLV 105
           + +RTAQI++ L++ +L AWTPYA++T IGQFG + S ++P  +A PA FAK  V
Sbjct: 346 TEIRTAQIVVTLILVYLTAWTPYAIVTLIGQFGSEDSHLSPMATAIPAYFAKTAV 400

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391358332|gb|AFM43711.1| onychopsin [Eoperipatus sp. LH-2012]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           ++TA+I L ++  ++ AWTPYAV+  +G F D S ITP VS  PA+FAK
Sbjct: 363 IKTAKIALTIIFLWIFAWTPYAVVALMGIFTDHSKITPLVSNLPAVFAK 411

Source: Eoperipatus sp. LH-2012

Species: Eoperipatus sp. LH-2012

Genus: Eoperipatus

Family: Peripatidae

Phylum: Onychophora

Superkingdom: Eukaryota

>gi|321473064|gb|EFX84032.1| arthropsin8 [Daphnia pulex]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 52  SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-ITPWVSATPAIFAK 102
           + +RTAQI++ L++ +L AWTPYA++T IGQFG     ++P  +A PA FAK
Sbjct: 289 TEIRTAQIVVTLILVYLTAWTPYAIVTLIGQFGSKDYQLSPMATAVPAYFAK 340

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001797|dbj|BAM66999.1| B-sensitive opsin [Eurema hecabe]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           +R A++   +   F+ AWTPYAV+T IG FGD SL+TP V+  PA+FAK
Sbjct: 280 IRIAKVAFTIFFLFVCAWTPYAVVTMIGAFGDRSLLTPHVTMIPAVFAK 328

Source: Eurema hecabe

Species: Eurema hecabe

Genus: Eurema

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001813|dbj|BAM67007.1| B-sensitive opsin [Gonepteryx rhamni]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           +R A++   +   F+ AWTPYAV+T IG FGD SL+TP V+  PA+FAK
Sbjct: 279 IRIAKVAFTIFFLFVCAWTPYAVVTMIGAFGDRSLLTPHVTMIPAVFAK 327

Source: Gonepteryx rhamni

Species: Gonepteryx rhamni

Genus: Gonepteryx

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001807|dbj|BAM67004.1| B-sensitive opsin, partial [Eurema laeta]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           +R A++   +   F+ AWTPYAV+T IG FGD SL+TP V+  PA+FAK
Sbjct: 280 IRIAKVAFTIFFLFVCAWTPYAVVTMIGAFGDRSLLTPHVTMIPAVFAK 328

Source: Eurema laeta

Species: Eurema laeta

Genus: Eurema

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001789|dbj|BAM66995.1| B-sensitive opsin [Colias erate]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           +R A++   +   F+ AWTPYA++T IG FGD SL+TP V+  PA+FAK
Sbjct: 280 IRIAKVAFTIFFLFVCAWTPYAIVTMIGAFGDRSLLTPHVTMIPAVFAK 328

Source: Colias erate

Species: Colias erate

Genus: Colias

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392499153|gb|AFM75825.1| onychopsin [Epiperipatus cf. isthmicola LH-2012]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 54  VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           ++TA+I   ++  ++ AWTPYAV+  +G F D S ITP VS  PA+FAK
Sbjct: 360 IKTAKIAFSIIFLWIFAWTPYAVVALMGVFTDHSKITPLVSNLPAVFAK 408

Source: Epiperipatus cf. isthmicola LH-2012

Species: Epiperipatus cf. isthmicola LH-2012

Genus: Epiperipatus

Family: Peripatidae

Phylum: Onychophora

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
ZFIN|ZDB-GENE-080227-16	387	opn3 "opsin 3" [Danio rerio (t	0.421	0.124	0.437	7.8e-08
FB|FBgn0014019	382	Rh5 "Rhodopsin 5" [Drosophila	0.561	0.167	0.393	9.8e-08
UNIPROTKB|Q4R1I4	706	OPN4 "Melanopsin" [Branchiosto	0.429	0.069	0.428	3.2e-07
UNIPROTKB|F1P4Q2	287	LOC771085 "Uncharacterized pro	0.675	0.268	0.341	6.8e-07
ZFIN|ZDB-GENE-091118-50	448	tmtopsb "teleost multiple tiss	0.736	0.187	0.292	9.4e-07
UNIPROTKB|E1C4K3	274	COPN5L1 "Uncharacterized prote	0.692	0.288	0.333	1e-06
FB|FBgn0003250	378	Rh4 "Rhodopsin 4" [Drosophila	0.517	0.156	0.360	1.2e-06
UNIPROTKB|Q9UHM6	478	OPN4 "Melanopsin" [Homo sapien	0.464	0.110	0.358	1.3e-06
UNIPROTKB|C9JWU6	495	OPN4 "Melanopsin" [Homo sapien	0.464	0.107	0.358	1.4e-06
UNIPROTKB|F1NU85	276	COPN5L1 "Uncharacterized prote	0.692	0.286	0.351	2.2e-06

ZFIN|ZDB-GENE-080227-16 opn3 "opsin 3" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query:    55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
             + A + LM++ CFL+ WTPYAV++ +  FG  S+++P V+  P++FAK
Sbjct:   236 KVAVMFLMMISCFLVCWTPYAVVSMLEAFGKKSVVSPTVAIIPSLFAK 283

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query:    47 ATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL-- 104
             A  ++  +R A+  L++ + F+LAWTPY+V+  IG FG+  LITP+VS  P +  K +  
Sbjct:   267 ADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSC 326

Query:   105 VDSRIY 110
             +D  +Y
Sbjct:   327 LDPWVY 332

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0009588 "UV-A, blue light phototransduction" evidence=NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016038 "absorption of visible light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)]

 Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 21/49 (42%), Positives = 36/49 (73%)

Query:    54 VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
             ++TA+I  +++  F+ AWTPYAV++ +G  G   L+TP++ + PA+FAK
Sbjct:   310 IKTAKIAFIVISLFMSAWTPYAVVSALGTLGYQDLVTPYLQSIPAMFAK 358

GO:0004744 "retinal isomerase activity" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007602 "phototransduction" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0009584 "detection of visible light" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1P4Q2 LOC771085 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query:    37 AYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSAT 96
             A K    IH+ T          +++  VIC+L+ W PY VI  +  FG   ++TP  S  
Sbjct:   198 AVKQVGKIHKNTARKREYHVLFMVITTVICYLVCWIPYGVIALLATFGKPGVVTPVASII 257

Query:    97 PAIFAKF--LVDSRIYILV 113
             P+I AK   + +  IYIL+
Sbjct:   258 PSILAKSSTVCNPIIYILM 276

GO:0007601 "visual perception" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

ZFIN|ZDB-GENE-091118-50 tmtopsb "teleost multiple tissue opsin b" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query:    30 VVTNYTLAYKLAMPIHRATPLNSAVRTAQILLM---LVICFLLAWTPYAVITFIGQFGDA 86
             +V +Y    +    + R   + S  R  ++L M   +V+C+LL W PY ++  +  FG  
Sbjct:   269 IVYSYGRLLQAITQVSRINTVVSRKREQRVLFMVVTMVVCYLLCWLPYGIMALLATFGHP 328

Query:    87 SLITPWVSATPAIFAKF--LVDSRIYILV 113
              L+TP  S  P++ AK   +++  IYI +
Sbjct:   329 GLVTPAASIVPSLLAKSSTVINPIIYIFM 357

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1C4K3 COPN5L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 29/87 (33%), Positives = 42/87 (48%)

Query:    24 ICDCGGVVTNYTLAYKLAMPIHRAT---PLNSAVRTAQIL---LMLVIC--FLLAWTPYA 75
             I  CG +VT+Y+L         +A    P +   +  ++L   L + +C  F  AW+PYA
Sbjct:   169 ILPCGVIVTSYSLILVTVKESSKAAEELPSSCTTQHCEVLVYKLSIAVCIGFFAAWSPYA 228

Query:    76 VITFIGQFGDASLITPWVSATPAIFAK 102
             +I     FG    I P   A PA+FAK
Sbjct:   229 IIAMWAAFGSIDKIPPLAFAIPAVFAK 255

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query:    54 VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRIYI 111
             +R A+  + +   F ++WTPY V++ IG FGD SL+TP  +  PA   K +  +D  +Y 
Sbjct:   276 IRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYA 335

Query:   112 L 112
             +
Sbjct:   336 I 336

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q9UHM6 OPN4 "Melanopsin" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 19/53 (35%), Positives = 37/53 (69%)

Query:    50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
             L S  + A+I+L++++ F+L+W PY+ +  +   G A ++TP++S+ PA+ AK
Sbjct:   288 LQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAK 340

GO:0007601 "visual perception" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0007602 "phototransduction" evidence=IDA

GO:0005502 "11-cis retinal binding" evidence=IDA

GO:0042752 "regulation of circadian rhythm" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0009584 "detection of visible light" evidence=IDA

UNIPROTKB|C9JWU6 OPN4 "Melanopsin" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 19/53 (35%), Positives = 37/53 (69%)

Query:    50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
             L S  + A+I+L++++ F+L+W PY+ +  +   G A ++TP++S+ PA+ AK
Sbjct:   299 LQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAK 351

GO:0007601 "visual perception" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

UNIPROTKB|F1NU85 COPN5L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 32/91 (35%), Positives = 45/91 (49%)

Query:    24 ICDCGGVVTNYTLAY------KLAMPIHRATPL---NSAVRTAQIL-LMLVIC--FLLAW 71
             I  CG +VT+Y+L        + A+  H + P    N    TA++  L + +C  F  AW
Sbjct:   169 ILPCGVIVTSYSLILVTVKESRKAVEQHVSGPTRINNVQTITAKVYKLSIAVCIGFFAAW 228

Query:    72 TPYAVITFIGQFGDASLITPWVSATPAIFAK 102
             +PYA+I     FG    I P   A PA+FAK
Sbjct:   229 SPYAIIAMWAAFGSIDKIPPLAFAIPAVFAK 259

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG4219|consensus	423		99.79
PHA03234	338	DNA packaging protein UL33; Provisional	99.67
PHA03235	409	DNA packaging protein UL33; Provisional	99.56
PHA02834	323	chemokine receptor-like protein; Provisional	99.55
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.51
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.43
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.27
KOG4220|consensus	503		99.18
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.82
KOG2087|consensus	363		97.5
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	96.73
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	96.06
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	95.74
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	94.22
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	92.7
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	90.51
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	90.26
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	85.87
KOG2575|consensus	510		84.01
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	81.43

>KOG4219|consensus

Probab=99.79  E-value=1.2e-19  Score=131.00  Aligned_cols=97  Identities=14%  Similarity=0.214  Sum_probs=76.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccccc--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcch
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHR--ATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA---SLITP   91 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~--~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~---~~~~~   91 (114)
                      |.+|++|+..+|.+|++.+|..+..+++..  .++.++|+|+.||++++++.|++||+|||+.+++....++   .....
T Consensus       218 YflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~  297 (423)
T KOG4219|consen  218 YFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQ  297 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHH
Confidence            578999999999999999998776554332  2346678999999999999999999999999988654321   22334


Q ss_pred             HHHHHHHHHHhcCc--Chhhhhhc
Q psy4254          92 WVSATPAIFAKFLV--DSRIYILV  113 (114)
Q Consensus        92 ~~~~~~~~~~~s~~--NPiiY~~~  113 (114)
                      ..+....|+++|++  ||+||+++
T Consensus       298 ~vyl~~~WLaMSst~yNPiIY~~l  321 (423)
T KOG4219|consen  298 QVYLAIYWLAMSSTCYNPIIYCFL  321 (423)
T ss_pred             HHHHHHHHHHHHHhhhccHhhhhh
Confidence            45566789999887  99999985

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.67  E-value=2.1e-16  Score=114.02  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcc----
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD---ASLIT----   90 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~---~~~~~----   90 (114)
                      .+|+++|.+||.+|.+.+++   .       +.++++|+.|++++++++|++||+|||++.+++....   .....    
T Consensus       207 ~iPl~im~~cY~~I~~~L~~---~-------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~  276 (338)
T PHA03234        207 IFPTMIFSFFYVIFCKALHA---L-------TEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQ  276 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---h-------hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHH
Confidence            68999999999999544432   1       1234679999999999999999999999887654321   11111    


Q ss_pred             -hHHHHHHHHHHh--cCcChhhhhhc
Q psy4254          91 -PWVSATPAIFAK--FLVDSRIYILV  113 (114)
Q Consensus        91 -~~~~~~~~~~~~--s~~NPiiY~~~  113 (114)
                       .....++.++++  |+.||+||++.
T Consensus       277 ~~~~~~v~~~La~~nsclNPiIY~f~  302 (338)
T PHA03234        277 REILQIIIRLMPEIHCFSNPLVYAFT  302 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHh
Confidence             122334445554  44499999985

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.56  E-value=1.2e-14  Score=107.27  Aligned_cols=87  Identities=15%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-C---
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD----AS-L---   88 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~----~~-~---   88 (114)
                      +++|+++|++||.+|.+.++..      +    .++++|..+++.++++.|++||+||++..++..+..    .+ .   
T Consensus       213 f~iPl~im~~~Y~~I~~~l~~~------~----~~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~  282 (409)
T PHA03235        213 GIAPVVMMTWFYTFFYRTLKRA------S----YKKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHIN  282 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh------h----hhcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhh
Confidence            5789999999999995444321      1    122457788888899999999999999888764421    11 0   


Q ss_pred             cchHHHHHHHHHHh--cCcChhhhhhc
Q psy4254          89 ITPWVSATPAIFAK--FLVDSRIYILV  113 (114)
Q Consensus        89 ~~~~~~~~~~~~~~--s~~NPiiY~~~  113 (114)
                      .......++.++++  |+.||+||+++
T Consensus       283 ~~~~~~~i~~~La~~ns~lNPiIY~~~  309 (409)
T PHA03235        283 LRDAVSTLSRLVPNLHCLLNPILYAFL  309 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHh
Confidence            11122334444444  44499999985

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.55  E-value=7.2e-15  Score=105.27  Aligned_cols=87  Identities=18%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------c
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-------I   89 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-------~   89 (114)
                      +++|+.+|.+||.+|.+.++   +.   +    +++++|..|+++++++.|++||+||++..++..+.+.+.       .
T Consensus       198 f~iPl~ii~~~Y~~I~~~l~---~~---~----~~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~  267 (323)
T PHA02834        198 IVIPLIILIYCYSKILYTLK---NC---K----NKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHF  267 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---hc---c----CcccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHH
Confidence            46899999999999954432   21   1    123568889999999999999999999987765432110       0


Q ss_pred             chH--HHHHHHHHHhc--CcChhhhhhc
Q psy4254          90 TPW--VSATPAIFAKF--LVDSRIYILV  113 (114)
Q Consensus        90 ~~~--~~~~~~~~~~s--~~NPiiY~~~  113 (114)
                      ...  ...++.+++.+  +.||+||+++
T Consensus       268 ~~~~~~~~i~~~l~~~ns~iNPiIY~~~  295 (323)
T PHA02834        268 KKIVYSIDIAELISFVHCCVNPIIYAFV  295 (323)
T ss_pred             HHHHHHHHHHHHHHHhhccccHHHHHHh
Confidence            111  12234445544  4499999975

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.51  E-value=5.8e-14  Score=103.89  Aligned_cols=87  Identities=13%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA----------   86 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~----------   86 (114)
                      +.+|+++|.+||.+|.+.++   +.       +.++++|..|++++++++|++||+||++..++..+...          
T Consensus       282 f~lPl~vmi~cY~~I~~~L~---~~-------~~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~  351 (417)
T PHA02638        282 MFIPIIIFAFCYIKIILKLK---QL-------KKSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEH  351 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---Hh-------hccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Confidence            36899999999999954442   21       11235677899999999999999999998887654311          


Q ss_pred             -CCcc--hHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          87 -SLIT--PWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        87 -~~~~--~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                       ....  +....++..+  .+++.||++|++.
T Consensus       352 ~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~  383 (417)
T PHA02638        352 ICGFIKLGYAMMLAEAISLTHCCINPLIYTLI  383 (417)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence             0011  1112233344  4555599999985

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.43  E-value=9.1e-13  Score=89.11  Aligned_cols=94  Identities=22%  Similarity=0.329  Sum_probs=66.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccc----cccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cch
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPI----HRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-ITP   91 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~----~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-~~~   91 (114)
                      +.+|+.++..+|.++.+..++.++..+.    ..+++.++++|.++++.++++.|++||+|+.+..++....+... ...
T Consensus       157 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~  236 (257)
T PF00001_consen  157 FILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISS  236 (257)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHH
T ss_pred             cccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhH
Confidence            4689999999999997666654432211    11123456789999999999999999999999998887765442 233


Q ss_pred             HHHHHHHHHH--hcCcChhhh
Q psy4254          92 WVSATPAIFA--KFLVDSRIY  110 (114)
Q Consensus        92 ~~~~~~~~~~--~s~~NPiiY  110 (114)
                      .......+++  +++.||++|
T Consensus       237 ~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  237 ILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCcEEC
Confidence            3344444444  444599999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.27  E-value=8e-12  Score=89.54  Aligned_cols=88  Identities=19%  Similarity=0.331  Sum_probs=57.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCc--
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD----A-SLI--   89 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~----~-~~~--   89 (114)
                      +.+|+.++.++|.++.+.+   ++.      ++.++++|+.|++.+++++|++||+|+++..++.....    . ...  
T Consensus       212 ~~lP~~ii~~~y~~i~~~l---~~~------~~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~  282 (335)
T PHA03087        212 MLIPLTILLYCYSKILITL---KGI------NKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVK  282 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHH---Hhc------ccchhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHH
Confidence            4689999999999994332   221      11235678999999999999999999999876654311    1 111  


Q ss_pred             -chHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          90 -TPWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        90 -~~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                       ......+..++  .+++.||+||+++
T Consensus       283 ~~~~~~~i~~~l~~~ns~~NPiIY~~~  309 (335)
T PHA03087        283 YIQYALHVTEIISLSHCCINPLIYAFV  309 (335)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHc
Confidence             11112233333  4455599999985

>KOG4220|consensus

Probab=99.18  E-value=1.1e-11  Score=90.46  Aligned_cols=62  Identities=21%  Similarity=0.406  Sum_probs=50.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc--Chhhhhh
Q psy4254          50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLV--DSRIYIL  112 (114)
Q Consensus        50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--NPiiY~~  112 (114)
                      ..+++|++|++..|++.|++||+||+++.++..|.+. .++.....+..|+++-|+  ||++|++
T Consensus       409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~-CiP~tlW~~gYwLCYINSTiNP~CYAL  472 (503)
T KOG4220|consen  409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN-CIPETLWTFGYWLCYINSTINPLCYAL  472 (503)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc-ccchhHhhhhhheeeecccccHHHHHH
Confidence            3678999999999999999999999999999998765 355555666666655554  9999986

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.82  E-value=0.00015  Score=51.79  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcch---HH
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA-SLITP---WV   93 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~-~~~~~---~~   93 (114)
                      .+|.+........+++.+++.++.++...+++.+++.+.++++..+.+.|+++=+|..+..++..+..+ .....   ..
T Consensus       202 iiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~  281 (318)
T PF10324_consen  202 IIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQL  281 (318)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence            356666666666665555544332221111123356789999999999999999999999888664222 11111   11


Q ss_pred             HHH--HHHHHhcCcChhhhhhcC
Q psy4254          94 SAT--PAIFAKFLVDSRIYILVL  114 (114)
Q Consensus        94 ~~~--~~~~~~s~~NPiiY~~~l  114 (114)
                      ..+  .....|+++|++||.++.
T Consensus       282 ~~~~~~l~~~ns~~h~~ic~~mS  304 (318)
T PF10324_consen  282 SIIFNILITINSSIHFFICCFMS  304 (318)
T ss_pred             HHHHHHHHHHHhhhHHHhhhhhh
Confidence            122  223467777999998863

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>KOG2087|consensus

Probab=97.50  E-value=1.5e-06  Score=62.87  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSAT-   96 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~-   96 (114)
                      .+-+++|++||+++   ....++...+   ... .+.+..|-+..++..-++||.|.+...+...++. +..+.....+ 
T Consensus       202 ~lafiiia~~Y~~i---y~~l~~~~~~---~~~-~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~-~li~~~~sk~l  273 (363)
T KOG2087|consen  202 LLAFIIIAFSYGKI---YCSLRKGDLS---ATL-ISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGV-ELISVSYSKWL  273 (363)
T ss_pred             HHHHHHHHHHhhhh---heeeecCCCc---ccc-chhhhhhCeeEEEEccccccCchheeeeHHhcCC-cccChhhceeE
Confidence            46788999999999   3333221111   111 1125555566677788999999998887765543 2222221111 


Q ss_pred             --HHHHHhcCcChhhhhhc
Q psy4254          97 --PAIFAKFLVDSRIYILV  113 (114)
Q Consensus        97 --~~~~~~s~~NPiiY~~~  113 (114)
                        ...=.||+.||++|++.
T Consensus       274 lv~flPlns~~NP~LYa~f  292 (363)
T KOG2087|consen  274 LVFFLPLNSCLNPFLYAFF  292 (363)
T ss_pred             EEEEEEcccccCchhHHHc
Confidence              11125777799999985

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=96.73  E-value=0.0075  Score=44.52  Aligned_cols=94  Identities=11%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             eeeeccchHHHHHHHHHHHHHHHHHHhhhc-----cccc-cCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q psy4254          13 RYQVRSPPLTKICDCGGVVTNYTLAYKLAM-----PIHR-ATPLNSA-VRTAQILLMLVICFLLAWTPYAVITFIGQFG-   84 (114)
Q Consensus        13 ~~~~~~iPl~vi~~~y~~i~~~~~~~~~~~-----~~~~-~~~~~~~-~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~-   84 (114)
                      +|...-+|+++.+...-.+.  ....++..     ++.. +++.|+. +.+.+-.+-++++|.+||+|.-+-.++..+. 
T Consensus       194 hYvttY~PlllVlvaNPiLy--~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~  271 (405)
T PF02101_consen  194 HYVTTYIPLLLVLVANPILY--IKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLE  271 (405)
T ss_pred             hHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhh
Confidence            45555578887776665552  22222211     1111 1112222 2233345668899999999988765543221 


Q ss_pred             -CCC-----CcchHHHHHHHHHHhcCcChh
Q psy4254          85 -DAS-----LITPWVSATPAIFAKFLVDSR  108 (114)
Q Consensus        85 -~~~-----~~~~~~~~~~~~~~~s~~NPi  108 (114)
                       +..     ...........|+.+...||.
T Consensus       272 ~~~~i~~~sl~~~~~a~~t~W~IMaIlNPl  301 (405)
T PF02101_consen  272 MQPDINGGSLKQVRNAALTTWFIMAILNPL  301 (405)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHhHH
Confidence             110     011112344568877777874

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=96.06  E-value=0.065  Score=30.78  Aligned_cols=61  Identities=11%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc--Chhhhhh
Q psy4254          52 SAVRTAQILLMLVICFLLAWT-PYAVITFIGQFGDASLITPWVSATPAIFAKFLV--DSRIYIL  112 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~-P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--NPiiY~~  112 (114)
                      +-+|..|.+++==++|+++|+ |+..-..-...+.+..-+.+...++....-++.  |-++|++
T Consensus         6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~   69 (76)
T PF11970_consen    6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTL   69 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheee
Confidence            446777888888899999999 976433322222222222233333333333333  8887764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=95.74  E-value=0.17  Score=36.31  Aligned_cols=58  Identities=7%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhh-c---cccccCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLA-M---PIHRATPLNSAVRTAQILLMLVICFLLAWTPYA   75 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~-~---~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~   75 (114)
                      .+|+.++..+...++..+++.-+. +   +..++.+.++..|+.|++...++.|.++++-..
T Consensus       190 ~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~  251 (303)
T PF05296_consen  190 FLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLI  251 (303)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999998887676664222 1   111234556778999999988888888776543

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.22  E-value=0.47  Score=33.65  Aligned_cols=50  Identities=12%  Similarity=0.178  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHH
Q psy4254          22 TKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAW   71 (114)
Q Consensus        22 ~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw   71 (114)
                      ++...||+.+...+++.++....+.+++.++|.|.+.+..+.+..+++..
T Consensus       177 v~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~  226 (283)
T PF10323_consen  177 VICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVIL  226 (283)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence            35567787775444433221111122345566777777766666554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=92.70  E-value=1.8  Score=31.28  Aligned_cols=25  Identities=16%  Similarity=0.409  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4254          60 LLMLVICFLLAWTPYAVITFIGQFG   84 (114)
Q Consensus        60 ~~~iv~~F~icw~P~~v~~l~~~~~   84 (114)
                      +..=.++|.+||+|-.+.++.+.++
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~  228 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIG  228 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4457789999999999888887665

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.51  E-value=0.7  Score=32.26  Aligned_cols=31  Identities=19%  Similarity=0.384  Sum_probs=24.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254          50 LNSAVRTAQILLMLVICFLLAWTPYAVITFI   80 (114)
Q Consensus        50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~   80 (114)
                      .++++|+.|.+.+.++.|+.+|.=..+...+
T Consensus       179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v  209 (257)
T PF10320_consen  179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTV  209 (257)
T ss_pred             chhHHHHHHHhhhheeeeeHHHHHHHHHHHH
Confidence            4457899999999999999999766555444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.26  E-value=1.7  Score=31.15  Aligned_cols=34  Identities=9%  Similarity=0.090  Sum_probs=23.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4254          50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQF   83 (114)
Q Consensus        50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~   83 (114)
                      .++.|++.+-+.+=.++-.+|.+|-.+.......
T Consensus       232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~  265 (303)
T PF10327_consen  232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIF  265 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            4445677777777777778888998876655443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.87  E-value=10  Score=26.87  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=32.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc-Chhhhhh
Q psy4254          50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLV-DSRIYIL  112 (114)
Q Consensus        50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~-NPiiY~~  112 (114)
                      ++..++..|.+.+=..+=.++..|-....+...++..+ .....+........... ||+++..
T Consensus       219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~  281 (292)
T PF10317_consen  219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLY  281 (292)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhhee
Confidence            33445667777666667777778766666554443322 11111222222233333 9998643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>KOG2575|consensus

Probab=84.01  E-value=1.4  Score=33.26  Aligned_cols=25  Identities=28%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254          53 AVRTAQILLMLVICFLLAWTPYAVI   77 (114)
Q Consensus        53 ~~k~~k~~~~iv~~F~icw~P~~v~   77 (114)
                      -.|..+...++++.|++||.|+...
T Consensus       254 f~ri~~ia~~Vv~TF~iiw~P~~~~  278 (510)
T KOG2575|consen  254 FARIIKIALAVVGTFVIIWLPFLLS  278 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678888899999999999998643

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=81.43  E-value=6.1  Score=28.69  Aligned_cols=82  Identities=10%  Similarity=0.008  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH--HH
Q psy4254          22 TKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATP--AI   99 (114)
Q Consensus        22 ~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~--~~   99 (114)
                      ..+..+|..+...+.+.++..  .+....++++++.--..++.+...+.+.=|.....    .   ..+++.....  .|
T Consensus       209 ~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f----~---~~p~~~i~~~~~~W  279 (313)
T PF10321_consen  209 ICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQF----F---PPPPWLIIIGQISW  279 (313)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeee----e---cccHHHHHHHHHHH
Confidence            356667776643343332211  12123344555555555555555554443332221    1   1233433332  35


Q ss_pred             HHhcCcChhhhhh
Q psy4254         100 FAKFLVDSRIYIL  112 (114)
Q Consensus       100 ~~~s~~NPiiY~~  112 (114)
                      -.++.+||+||-.
T Consensus       280 ql~~g~~~iIYl~  292 (313)
T PF10321_consen  280 QLSHGCPPIIYLT  292 (313)
T ss_pred             hccCCccceEEEE
Confidence            5666779999954

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		1e-07
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		1e-07

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           N+ +R A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 253 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAK 304

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 51  NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           N+ +R A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAK 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-10
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	3e-10

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 55  RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
           R A+I +++V  FLL+W+PYAV+  + QFG    +TP+ +  P +FAK
Sbjct: 258 RLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAK 305

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 55  RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
              ++++++VI FL+ W PYA + F       S   P     PA FAK
Sbjct: 250 EVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAK 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.73
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.66
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.6
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.59
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.59
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.58
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.57
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.56
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.56
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.53
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.52
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.52
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.52
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.49
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.46
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.45
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.44
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.42
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.89
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	96.39

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.73  E-value=1.4e-17  Score=123.70  Aligned_cols=63  Identities=19%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch-------HHHHHHHHHH--hcCcChhhhhhc
Q psy4254          51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP-------WVSATPAIFA--KFLVDSRIYILV  113 (114)
Q Consensus        51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~-------~~~~~~~~~~--~s~~NPiiY~~~  113 (114)
                      ++++|++||+.+++++|++||+||+++.++..+.+......       +...++.|++  ||++||+||+++
T Consensus       402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~  473 (510)
T 4grv_A          402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV  473 (510)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35689999999999999999999999999887765443322       2234455554  555599999975

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.66  E-value=4.8e-16  Score=114.90  Aligned_cols=60  Identities=18%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--hcCcChhhhhh
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFA--KFLVDSRIYIL  112 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~--~s~~NPiiY~~  112 (114)
                      +++|++|++++++++|++||+||+++.++..+.+. ........+..|++  ||++||+||++
T Consensus       402 ~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~-~~~~~~~~~~~~L~y~NS~iNPiIY~~  463 (500)
T 2rh1_A          402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIYCR  463 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHGGGTHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhhcchhhhc
Confidence            56899999999999999999999999998887643 34455555555554  55559999975

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.60  E-value=8.9e-16  Score=111.98  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHHhcC--cChhhhhhc
Q psy4254          51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLIT----PWVSATPAIFAKFL--VDSRIYILV  113 (114)
Q Consensus        51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~----~~~~~~~~~~~~s~--~NPiiY~~~  113 (114)
                      ++++|++||+++++++|++||+||+++.++..+.......    .....++.+++.+|  .||+||+++
T Consensus       383 ~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~  451 (484)
T 3vw7_A          383 SKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYA  451 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHh
Confidence            3457999999999999999999999999987654322211    12233445555544  499999985

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.59  E-value=4.5e-15  Score=110.36  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchHHHHHH--HHHHhcCcChhhhhhc
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-ITPWVSATP--AIFAKFLVDSRIYILV  113 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-~~~~~~~~~--~~~~~s~~NPiiY~~~  113 (114)
                      +++|++|++++++++|++||+||++..++..+.+... .......+.  ..+.||+.||+||++.
T Consensus       415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~  479 (520)
T 3v2y_A          415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLT  479 (520)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4788999999999999999999999999877654321 112222223  3455666699999975

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.59  E-value=3.1e-15  Score=109.01  Aligned_cols=62  Identities=11%  Similarity=0.360  Sum_probs=47.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                      +++|++|++++++++|++||+|+++..++..+.+..........+..++  .++++||+||+++
T Consensus       395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~  458 (481)
T 3pbl_A          395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTF  458 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHc
Confidence            4789999999999999999999999999887655444445445444444  4555599999975

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.58  E-value=3.5e-15  Score=107.73  Aligned_cols=63  Identities=24%  Similarity=0.405  Sum_probs=47.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA-SLITPWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                      ++++|++|++++++++|++||+|+++..++..+.+. .....+...++.++  .|++.||+||+++
T Consensus       347 ~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~  412 (447)
T 4eiy_A          347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR  412 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhc
Confidence            356789999999999999999999999988877543 22334444444444  4555599999975

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.57  E-value=7.9e-15  Score=106.40  Aligned_cols=61  Identities=20%  Similarity=0.451  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                      +++|++|++++++++|++||+|++++.++..+.+. ........+..++  .+++.||+||+++
T Consensus       382 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~-~~~~~~~~i~~~L~~~ns~~NPiIY~~~  444 (467)
T 3uon_A          382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAP-CIPNTVWTIGYWLCYINSTINPACYALC  444 (467)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-TSCHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhhhhhHHHHHc
Confidence            56899999999999999999999999998887653 2334444445444  4455599999975

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.56  E-value=3.6e-15  Score=107.99  Aligned_cols=63  Identities=14%  Similarity=0.311  Sum_probs=45.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchHHHHHHHH--HHhcCcChhhhhhc
Q psy4254          51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL--ITPWVSATPAI--FAKFLVDSRIYILV  113 (114)
Q Consensus        51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~--~~~~~~~~~~~--~~~s~~NPiiY~~~  113 (114)
                      ++++|++|++++++++|++||+|+++..++..+.....  .......++.+  +.||+.||+||+++
T Consensus       376 ~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~  442 (464)
T 4dkl_A          376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFL  442 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHh
Confidence            45689999999999999999999999999887654222  22223334434  44555699999975

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.56  E-value=6.9e-15  Score=107.12  Aligned_cols=63  Identities=22%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254          51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS-LITPWVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~-~~~~~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                      ++++|++|++++++++|++||+|++++.++..+.+.. ........++.++  .+++.||+||+++
T Consensus       388 ~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~  453 (488)
T 3eml_A          388 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR  453 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhc
Confidence            3578999999999999999999999999988776432 2334344444444  4555599999975

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.53  E-value=4.7e-14  Score=97.48  Aligned_cols=86  Identities=19%  Similarity=0.416  Sum_probs=60.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch------
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP------   91 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~------   91 (114)
                      .+|+.++.++|.++.   +   +   .++ ...++++|+.|++.+++++|++||+|+++..+...+.+....+.      
T Consensus       184 ~~p~~i~~~~y~~i~---~---~---~~~-~~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~  253 (296)
T 2lnl_A          184 IVPLFVMLFCYGFTL---R---T---LFK-AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRN  253 (296)
T ss_dssp             HHHHHHHHHHHHHHT---T---T---SSS-CCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---H---H---HHH-HhhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhh
Confidence            578999999998882   1   1   111 23456789999999999999999999999999877654322111      


Q ss_pred             ---HHHHHHHHHHhcC--cChhhhhhc
Q psy4254          92 ---WVSATPAIFAKFL--VDSRIYILV  113 (114)
Q Consensus        92 ---~~~~~~~~~~~s~--~NPiiY~~~  113 (114)
                         .....+.+++.+|  .||+||++.
T Consensus       254 ~~~~~~~~~~~l~~~ns~~NPiIY~~~  280 (296)
T 2lnl_A          254 NIGRALDATEILGFLHSCLNPIIYAFI  280 (296)
T ss_dssp             HTTHHHHHHHHHGGGGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               1223445555544  499999975

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=105.18  Aligned_cols=61  Identities=18%  Similarity=0.350  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH--HHHHhcCcChhhhhhc
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATP--AIFAKFLVDSRIYILV  113 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~--~~~~~s~~NPiiY~~~  113 (114)
                      +++|++|++++++++|++||+|+++..++..+.+... ......+.  +.+.+++.||+||++.
T Consensus       367 ~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~-~~~~~~~~~~L~~~ns~~NPiIY~~~  429 (452)
T 3rze_A          367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-NEHLHMFTIWLGYINSTLNPLIYPLC  429 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhcccchhhhhc
Confidence            5789999999999999999999999999877654322 22223333  3445666699999975

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.52  E-value=5.4e-15  Score=103.57  Aligned_cols=94  Identities=29%  Similarity=0.458  Sum_probs=64.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhcccc--ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIH--RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVS   94 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~   94 (114)
                      +.+|++++.+||.+|.   +..++..+..  ++++.++++|++|++.+++++|++||+|+++..++....+.........
T Consensus       213 ~~ip~~ii~~~y~~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~  289 (349)
T 1u19_A          213 FIIPLIVIFFCYGQLV---FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFM  289 (349)
T ss_dssp             THHHHHHHHHHHTTTT---TSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHH
Confidence            4689999999999994   3332222111  1122345678999999999999999999999888776654444444444


Q ss_pred             HHHHHHH--hcCcChhhhhhc
Q psy4254          95 ATPAIFA--KFLVDSRIYILV  113 (114)
Q Consensus        95 ~~~~~~~--~s~~NPiiY~~~  113 (114)
                      .+..+++  +++.||+||++.
T Consensus       290 ~~~~~l~~~ns~~nPiiY~~~  310 (349)
T 1u19_A          290 TIPAFFAKTSAVYNPVIYIMM  310 (349)
T ss_dssp             HHHHHHGGGGGTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            4444554  444499999975

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.52  E-value=7.6e-15  Score=107.47  Aligned_cols=62  Identities=16%  Similarity=0.298  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C---cchHHHHHHHHHHhc--CcChhhhhhc
Q psy4254          52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS------L---ITPWVSATPAIFAKF--LVDSRIYILV  113 (114)
Q Consensus        52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~------~---~~~~~~~~~~~~~~s--~~NPiiY~~~  113 (114)
                      +++|++|++++++++|++||+|++++.++..+....      .   .......++.+++..  ++||+||++.
T Consensus       407 ~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~  479 (502)
T 3odu_A          407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFL  479 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhc
Confidence            468999999999999999999999998887653111      0   111222344455544  4499999985

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.49  E-value=1.8e-13  Score=94.31  Aligned_cols=94  Identities=15%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhcc-ccccC----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMP-IHRAT----PLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP   91 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~-~~~~~----~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~   91 (114)
                      +.+|++++.++|.++.+.+++.++..+ .++++    ..++++|+++++.+++++|++||+|+++..++..+++.. .+.
T Consensus       186 ~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~  264 (315)
T 4amj_A          186 FYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPD  264 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-SCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chH
Confidence            468999999999999655543221111 11101    123568999999999999999999999999887765432 333


Q ss_pred             HHHHHHHH--HHhcCcChhhhh
Q psy4254          92 WVSATPAI--FAKFLVDSRIYI  111 (114)
Q Consensus        92 ~~~~~~~~--~~~s~~NPiiY~  111 (114)
                      .......+  ..+++.||++|+
T Consensus       265 ~~~~~~~~l~~~ns~~nPiiY~  286 (315)
T 4amj_A          265 WLFVAFNWLGYANSAMNPIIYC  286 (315)
T ss_dssp             HHHHHHHHHHHHGGGTHHHHGG
T ss_pred             HHHHHHHHHHHHhccccHHHHc
Confidence            33444433  456666999997

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.46  E-value=8.2e-14  Score=98.40  Aligned_cols=97  Identities=13%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhcccc--ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Ccch
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPIH--RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS---LITP   91 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~---~~~~   91 (114)
                      +.+|++++.+||.+|.+.+++.++..+..  ++++.++++|++|++.+++++|++||+|+++..++..+.+..   ....
T Consensus       205 ~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~  284 (364)
T 2ks9_A          205 YFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQ  284 (364)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHH
Confidence            46899999999999953333211111111  111234568999999999999999999999998887665432   1122


Q ss_pred             HHHHHHHHH--HhcCcChhhhhhc
Q psy4254          92 WVSATPAIF--AKFLVDSRIYILV  113 (114)
Q Consensus        92 ~~~~~~~~~--~~s~~NPiiY~~~  113 (114)
                      .......++  .+++.||+||++.
T Consensus       285 ~~~~~~~~l~~~ns~~NPiiY~~~  308 (364)
T 2ks9_A          285 QVYLAIMWLAMSSTMYNPIIYCCL  308 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233333333  4555599999974

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.45  E-value=2.3e-13  Score=98.89  Aligned_cols=97  Identities=27%  Similarity=0.438  Sum_probs=65.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhc-----ccccc------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAM-----PIHRA------TPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD   85 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~-----~~~~~------~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~   85 (114)
                      +++|++++++||.+|.+.+++.++..     +...+      ...++++|++|++++++++|++||+|+++..++..++.
T Consensus       209 ~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~  288 (448)
T 2z73_A          209 FFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGP  288 (448)
T ss_dssp             THHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence            46899999999999976665432211     00000      01234678999999999999999999999998877654


Q ss_pred             CCCcchHHHHHHH--HHHhcCcChhhhhhc
Q psy4254          86 ASLITPWVSATPA--IFAKFLVDSRIYILV  113 (114)
Q Consensus        86 ~~~~~~~~~~~~~--~~~~s~~NPiiY~~~  113 (114)
                      ..........+..  ...++++||+||++.
T Consensus       289 ~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~  318 (448)
T 2z73_A          289 LEWVTPYAAQLPVMFAKASAIHNPMIYSVS  318 (448)
T ss_dssp             GGGCCHHHHHHHHHHHHHGGGSHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHhhcchHHHHh
Confidence            3323333333333  345666699999874

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.44  E-value=4.7e-13  Score=99.10  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhccc-c-----------------------ccCcchhhhHHHHHHHHHHHHHHHHHH
Q psy4254          17 RSPPLTKICDCGGVVTNYTLAYKLAMPI-H-----------------------RATPLNSAVRTAQILLMLVICFLLAWT   72 (114)
Q Consensus        17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~-~-----------------------~~~~~~~~~k~~k~~~~iv~~F~icw~   72 (114)
                      +.+|++++++||.+|.+.+++..+..+. .                       .+...++++|+++++++++++|++||+
T Consensus       357 ~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwl  436 (514)
T 3sn6_R          357 FYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL  436 (514)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999997666553211000 0                       001123568999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhh
Q psy4254          73 PYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYI  111 (114)
Q Consensus        73 P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~  111 (114)
                      |+++..++..+.+. ........+..++  .+++.||+||+
T Consensus       437 P~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~  476 (514)
T 3sn6_R          437 PFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIYC  476 (514)
T ss_dssp             HHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHhhhHHhhc
Confidence            99999988776543 3334444444444  45555999997

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.89  E-value=5.2e-11  Score=57.38  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254          53 AVRTAQILLMLVICFLLAWTPYAVITFIG   81 (114)
Q Consensus        53 ~~k~~k~~~~iv~~F~icw~P~~v~~l~~   81 (114)
                      ++|+.|++.+++++|++||+||++..++.
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~   29 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHS   29 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            35788999999999999999999987654

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=96.39  E-value=0.0015  Score=31.62  Aligned_cols=15  Identities=27%  Similarity=0.290  Sum_probs=11.0

Q ss_pred             HHHhcCcChhhhhhc
Q psy4254          99 IFAKFLVDSRIYILV  113 (114)
Q Consensus        99 ~~~~s~~NPiiY~~~  113 (114)
                      ...+|+.||+||++.
T Consensus        10 ~~~ns~lNPiIY~~~   24 (40)
T 2koe_A           10 CLLNSTVNPIIYALR   24 (40)
T ss_dssp             HHHHHHSSTTTTBTT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            345566699999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.47

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=1.1e-14  Score=100.60  Aligned_cols=93  Identities=30%  Similarity=0.482  Sum_probs=65.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccc--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q psy4254          18 SPPLTKICDCGGVVTNYTLAYKLAMPIHR--ATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSA   95 (114)
Q Consensus        18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~--~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~   95 (114)
                      .+|+.++.++|.++   .+..++.....+  ..+.++++|++|++++++++|++||+|+.+..++....+..+.......
T Consensus       213 ~ip~~i~~~~y~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~  289 (348)
T d1u19a_         213 IIPLIVIFFCYGQL---VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMT  289 (348)
T ss_dssp             HHHHHHHHHHHTTT---TTSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHH---HhhhcccccccchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHH
Confidence            57899999999988   333332221111  1234567899999999999999999999998887766655555555555


Q ss_pred             HHHHHHhcCc--Chhhhhhc
Q psy4254          96 TPAIFAKFLV--DSRIYILV  113 (114)
Q Consensus        96 ~~~~~~~s~~--NPiiY~~~  113 (114)
                      +..+++..++  ||+||++.
T Consensus       290 ~~~~l~~~ns~iNPiIY~~~  309 (348)
T d1u19a_         290 IPAFFAKTSAVYNPVIYIMM  309 (348)
T ss_dssp             HHHHHGGGGGTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            5556655444  99999875