Psyllid ID: psy4257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETNNQIPVQDNLEKEKQPDH
Secondary Structure (PSIPRED)
ccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccHHHHHHccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHcccccccEEcccccccccccHHHccccccccEEEccccccccccccccccccccccccccEEEcccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccHHHHccccccccEEEccccccccccHHHHHccccccccccccccEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcEEEccccccccccHHHHcHHcccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccHHHHccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccHHHHHHHHcccccccccccHHHcccccccEEEEccccccccccccccccHHHHHHHHHHccccccccccHccccccccHHHcccccccccccccccccHHccccc
Coil and Loop (DISEMBL)
gltdlnwlflnNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSlyannnriTSLDGLLRGLTKLQVFNMDFNQITMVRRdefqnlhnldsislqnnqitsmnsslsGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNkinkfgtrnegknqvQGVTNIFELKLQHNeienldgalmgihglsrldlshnklrtispddfigldslkmLDISHNLLTTLEETSKTFLPALEELFVSHNsltrldkdfhglpvlckadlahNNIKAINIQLALKTQCQIFGLNSTLRIYlegnpvlcddsMRAVIDAMETINnntkihgeticqpdsnetsttttttttttpeptpaptstttqrsttstttqtpttpiqeeytetitlelpqpvetnnqipvqdnlekekqpdh
Flexible Loop (DISEMBL)
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLsynkinkfgtrnegknqvQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTkihgeticqpdsnetsttttttttttpeptpaptstttqrsttstttqtpttpiqeEYTETITLelpqpvetnnqipvqdnlekekqpdh
Low Complexity Region (SEG)
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNetsttttttttttpeptpaptstttqrsttstttqtpttpiqeeytetitLELPQPVETNNQIPVQDNLEKEKQPDH
Disordered region (IsUnstruct)
***DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGE*************************************************************************************
Disordered Region (DISOPRED)
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTS*************YTETITLELPQPVETN*****************
Disordered Region (DISEMBL)
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD*****************************************PIQEEYTETITLELPQPVETNNQIPVQDN*********
Disordered Region (DISPRO)
*LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETNNQIPVQDNL********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETNNQIPVQDNLEKEKQPDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q6P1C6	1117	Leucine-rich repeats and	yes	N/A	0.713	0.267	0.290	5e-24
Q6UXM1	1119	Leucine-rich repeats and	yes	N/A	0.713	0.267	0.290	8e-24
O94898	1065	Leucine-rich repeats and	no	N/A	0.794	0.312	0.293	1e-20
Q52KR2	1054	Leucine-rich repeats and	no	N/A	0.558	0.222	0.302	5e-20
P35859	603	Insulin-like growth facto	no	N/A	0.837	0.582	0.275	3e-19
O02833	605	Insulin-like growth facto	N/A	N/A	0.842	0.583	0.275	6e-19
P70389	603	Insulin-like growth facto	no	N/A	0.830	0.577	0.278	1e-18
Q7Z2Q7	622	Leucine-rich repeat-conta	no	N/A	0.935	0.630	0.251	1e-18
Q9H9A6	602	Leucine-rich repeat-conta	no	N/A	0.546	0.380	0.317	2e-17
Q4R3P6	602	Leucine-rich repeat-conta	N/A	N/A	0.546	0.380	0.313	3e-17

>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus GN=Lrig3 PE=1 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 171/337 (50%), Gaps = 38/337 (11%)

Query: 5   LNWLFLNNNRLKSLE-GQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           L +L++NNNR+ S+E G    L S L +L + +N++ A+P  +    QL  L  N N+I 
Sbjct: 169 LKYLYINNNRVSSMEPGYFDNLASTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIK 228

Query: 63  SLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTK 120
           ++DGL  +GL  L+   M  N +T +    F  L N++ + L +N +T +    L GL  
Sbjct: 229 NVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEVLQLDHNNLTEITKGWLYGLLM 288

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE-----------GKNQV- 168
           L  L+LS N +     D     ++L  +DL++N +++    +            G N+V 
Sbjct: 289 LRELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNALHIGNNKVS 348

Query: 169 -------QGVTNIFELKLQHNEI----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
                  +G+T++  L L++NEI    E++ GA  G+  L +L L  N++R+I+   F G
Sbjct: 349 YIADCAFRGLTSLKTLDLRNNEISWTIEDMSGAFSGLDRLRQLILQGNRIRSITKKAFAG 408

Query: 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNN 277
           LD+L+ LD+S N + +L+  + + +  L++L ++ +SL   D     LP      +A NN
Sbjct: 409 LDTLEHLDLSGNAIMSLQSNAFSQMKKLQQLHLNTSSLL-CDCQLRWLPQW----VAENN 463

Query: 278 IKA-INIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313
            ++ +N   A     Q+    S   +  +G   +CDD
Sbjct: 464 FQSFVNASCA---HPQLLKGRSIFTVSPDG--FVCDD 495

Mus musculus (taxid: 10090)

>sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Homo sapiens GN=LRIG3 PE=2 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 173/337 (51%), Gaps = 38/337 (11%)

Query: 5   LNWLFLNNNRLKSLE-GQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           L +L+LN+NR+ S+E G    L+  L +L + +N++ A+P  +    QL  L  N N+I 
Sbjct: 169 LKYLYLNSNRVTSMEPGYFDNLANTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIK 228

Query: 63  SLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTK 120
           ++DGL  +GL  L+   M  N +T +    F  L N++ + L +N +T +    L GL  
Sbjct: 229 NVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLM 288

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-----------GTRNEGKNQV- 168
           L  L+LS N +     D     ++L  +DL++N +++             T + G N+V 
Sbjct: 289 LQELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNRVS 348

Query: 169 -------QGVTNIFELKLQHNEI----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
                  +G++++  L L++NEI    E+++GA  G+  L RL L  N++R+I+   F G
Sbjct: 349 YIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTG 408

Query: 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNN 277
           LD+L+ LD+S N + +L+  + + +  L++L ++ +SL   D     LP      +A NN
Sbjct: 409 LDALEHLDLSDNAIMSLQGNAFSQMKKLQQLHLNTSSLL-CDCQLKWLPQW----VAENN 463

Query: 278 IKA-INIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313
            ++ +N   A     Q+    S   +  +G   +CDD
Sbjct: 464 FQSFVNASCA---HPQLLKGRSIFAVSPDG--FVCDD 495

Homo sapiens (taxid: 9606)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 190/385 (49%), Gaps = 52/385 (13%)

Query: 5   LNWLFLNNNRLKSLE-GQLGTLSKLQLLV-IEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           L +L L+NNR+ +LE G    LS   L+V + +N++  +P  I     L  L    NRI 
Sbjct: 169 LKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIPPKIFKLPHLQFLELKRNRIK 228

Query: 63  SLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTK 120
            ++GL  +GL  L+   M  N I+ ++   F  L+N++ + L++N +T +N   L GL  
Sbjct: 229 IVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTRVNKGWLYGLRM 288

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR-----------NEGKNQV- 168
           L  LY+S N +     D     +RL  +DLSYN++ +               N G N+V 
Sbjct: 289 LQQLYVSQNAIERISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVT 348

Query: 169 ---QGV----TNIFELKLQHNEI----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
               GV    +N+  L L++NEI    E+   A  G+  L++L L  N++++I+   FIG
Sbjct: 349 HIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIG 408

Query: 218 LDSLKMLDISHNLLTTLEET--SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
           L+SL+ LD+++N + +++E   S+T    L+EL ++ +SL     D H L  L +  + +
Sbjct: 409 LESLEHLDLNNNAIMSIQENAFSQTH---LKELILNTSSLL---CDCH-LKWLLQWLVDN 461

Query: 276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGET 335
           N   ++N+  A     +     S L + L+    +CDD ++  I          + H ET
Sbjct: 462 NFQHSVNVSCA---HPEWLAGQSILNVDLKD--FVCDDFLKPQI----------RTHPET 506

Query: 336 ICQ-PDSNETSTTTTTTTTTTPEPT 359
           I      N T T T  +++ +P  T
Sbjct: 507 IIALRGMNVTLTCTAVSSSDSPMST 531

Homo sapiens (taxid: 9606)

>sp|Q52KR2|LRIG2_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Mus musculus GN=Lrig2 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 27/261 (10%)

Query: 5   LNWLFLNNNRLKSLE-GQLGTLSKLQLLV-IEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           L +L L+NNR+ +LE G    LS   L+V + +N++  +P  +     L  L    NRI 
Sbjct: 168 LKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRNRISMIPPKVFKLPHLQFLELKRNRIK 227

Query: 63  SLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTK 120
            ++GL  +GL  L+   M  N I+ ++   F  L+N++ + L++N +T +N   L GL  
Sbjct: 228 IVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVNKGWLYGLRM 287

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR-----------NEGKNQV- 168
           L  LY+S N + +   D     +RL  +DLSYN++ +               N G N+V 
Sbjct: 288 LQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVT 347

Query: 169 ---QGV----TNIFELKLQHNEI----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
               GV    +N+  L L++N+I    E+   A  G+  L++L L  N++++++   FIG
Sbjct: 348 HIADGVFRFLSNLQTLDLRNNDISWAIEDASEAFSGLKSLTKLILQGNRIKSVTQKAFIG 407

Query: 218 LDSLKMLDISHNLLTTLEETS 238
           L+SL+ LD+++N + +++E +
Sbjct: 408 LESLEYLDLNNNAIMSIQENA 428

Mus musculus (taxid: 10090)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 170/374 (45%), Gaps = 23/374 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 58
           GL +L  L L+ N L+S++  +   L +LQ L +++N + A+ P        L  L  ++
Sbjct: 216 GLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSH 275

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
           NR+  L +    GL  L V  +  N I  +R   F++LH L+ + L +N+I  +   +  
Sbjct: 276 NRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTFE 335

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
           GL +L  L L+ NQ+TE  +    GL  +  ++LS N +     R       QG+  +  
Sbjct: 336 GLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPER-----VFQGLDKLHS 390

Query: 177 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           L L+H+ + ++      G+ GL RL L  N + +I      GL  L  LD++ N LT L 
Sbjct: 391 LHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLP 450

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVLCKADLAHNNIKAIN----------IQ 284
                 L  LE L +S+N LT L  +  G L      D++HN+++ +             
Sbjct: 451 RQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRVRY 510

Query: 285 LALK-TQCQIFGLNSTL-RIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSN 342
           L+L+    Q F     L R++L+ NP  C   ++A+ D             +T+C+ D  
Sbjct: 511 LSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQTVCEGDDC 570

Query: 343 ETSTTTTTTTTTTP 356
           +   T    T   P
Sbjct: 571 QPVYTYNNITCAGP 584

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 173/407 (42%), Gaps = 54/407 (13%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQL-GTLSKLQLLVIEQNQLEALPSDIQLFSQLG---SLYA 56
           GL  L  L L  NRL  L+  L   L++L+ L + +N L A+ +++  F+QL     LY 
Sbjct: 192 GLGGLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANV--FAQLPRLQKLYL 249

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQ------------------------ITMVRRDE 91
           + N I ++  G   GL  L+  ++  N+                        I  +R   
Sbjct: 250 DRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRT 309

Query: 92  FQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           F++LH L+ + L +N+I  +   S  GL +L  L L HNQL E  +    GL  +  ++L
Sbjct: 310 FEDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNL 369

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRT 209
           S N +     RN  +   +G+  +  L L+ + +  +      G+ GL RL L  N L  
Sbjct: 370 SGNCL-----RNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFAGLSGLRRLFLKDNGLVG 424

Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVL 268
           I      GL  L  LD++ N LT L       L  LE L +SHN L  L  D  G L   
Sbjct: 425 IEEQSLWGLAELLELDLTSNQLTHLPHQLFQGLGKLEYLLLSHNRLAELPADALGPLQRA 484

Query: 269 CKADLAHNNIKAINIQLALKTQCQIFGLN--------------STLRIYLEGNPVLCDDS 314
              D++HN ++A+   L L +  ++  LN                 R++LEGNP  C   
Sbjct: 485 FWLDVSHNRLEALPGSL-LASLGRLRYLNLRNNSLRTFTPQPPGLERLWLEGNPWDCSCP 543

Query: 315 MRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPA 361
           ++A+ D      +      + IC+ D  +    T    T    P  A
Sbjct: 544 LKALRDFALQNPSAVPRFVQAICEGDDCQPPVYTYNNITCASPPEVA 590

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 29/377 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 58
           GL +L  L L+ N L+S++  +   L +LQ L +++N + A+ P        L  L  ++
Sbjct: 216 GLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSH 275

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLS 116
           NR+  L +    GL  L V  +  N IT +R   F++LH L+ + L +N+I  +   +  
Sbjct: 276 NRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFE 335

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
           GL +L  L L+ NQ+ E  +    GL  +  ++LS N +     R+  ++  QG+  +  
Sbjct: 336 GLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCL-----RSLPEHVFQGLGRLHS 390

Query: 177 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           L L+H+ +  +      G+ GL RL L  N + +I      GL  L  LD++ N LT L 
Sbjct: 391 LHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLP 450

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVLCKADLAHN--------------NIKA 280
                 L  LE L +S+N LT L +D  G L      DL+HN               ++ 
Sbjct: 451 RQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHNRLETPAEGLFSSLGRLRY 510

Query: 281 INIQ-LALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQP 339
           +N++  +L+T     GL    R++L+ NP  C   ++A+ D             +T+C+ 
Sbjct: 511 LNLRNNSLQTFVPQPGLE---RLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQTVCEG 567

Query: 340 DSNETSTTTTTTTTTTP 356
           D  +   T    T   P
Sbjct: 568 DDCQPVYTYNNITCAGP 584

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|Q7Z2Q7|LRR70_HUMAN Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 190/438 (43%), Gaps = 46/438 (10%)

Query: 7   WLFLNNNRLKSL-EGQLGTLSKLQLLVIE-QNQLEALPSDIQLFSQLGSLYANNNRITSL 64
           +L+L  N +  + E +L  L  L  L ++  N L   P        L  L+ NNN I  L
Sbjct: 64  FLYLTGNNISYINESELTGLHSLVALYLDNSNILYVYPKAFVQLRHLYFLFLNNNFIKRL 123

Query: 65  D-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLA 122
           D G+ +GL  L+   + +NQ++ V R  F +L ++  ++LQ N++T + S +  G+  L 
Sbjct: 124 DPGIFKGLLNLRNLYLQYNQVSFVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALR 183

Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
            L LS+N +        + L+ L  + L  N + K  +     N  + + ++  L L HN
Sbjct: 184 ILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPS-----NAFEVLKSLRRLSLSHN 238

Query: 183 EIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
            IE +   A  G+  L  L L ++++R ++ D F G+++LK L +SHN L  L   + + 
Sbjct: 239 PIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDGFSGINNLKHLILSHNDLENLNSDTFSL 298

Query: 242 LPALEELFVSHNSLTRLDKD-FHGLPVLCKA-DLAHNNIKAINIQL-------------- 285
           L  L  L +  N +  +D D F  +    K  +L+ NN+ A++ ++              
Sbjct: 299 LKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTALHPRVLKPLSSLIHLQANS 358

Query: 286 -ALKTQCQIFGLNS-------TLRIYLEGNPVLCDDSMRAV-IDAMETINNNTKIHGETI 336
              +  C++ GL         TL IY +  P +   ++R + I    T + N       +
Sbjct: 359 NPWECNCKLLGLRDWLASSAITLNIYCQNPPSMRGRALRYINITNCVTSSINVSRAWAVV 418

Query: 337 CQPDSNETSTTTTTT---TTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITL 393
             P  +  +T         TT   P        T+    +   + PT+P    + E    
Sbjct: 419 KSPHIHHKTTALMMAWHKVTTNGSPL-----ENTETENITFWERIPTSPAGRFFQEN--- 470

Query: 394 ELPQPVETNNQIPVQDNL 411
               P+ET   +PVQ  L
Sbjct: 471 AFGNPLETTAVLPVQIQL 488

Renders cells highly sensitive to the activation by cytokines and lipopolysaccharide (LPS).

Homo sapiens (taxid: 9606)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 20/249 (8%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           TDL  L ++NN+L+SL   L  L  L +L I  NQL +LPS I+    L  L  ++N++ 
Sbjct: 82  TDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLK 141

Query: 63  SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 122
            L   +  L  L+   +  N++T +  + F+ L NL+ + L NN +T++ +S S L+ L 
Sbjct: 142 ILPEEITNLRNLKCLYLQHNELTCI-SEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLV 200

Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG----------KNQVQ--- 169
            L LS N+L   L  +I  +KRL+ +D + N +        G          +N+++   
Sbjct: 201 RLNLSSNELKS-LPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP 259

Query: 170 ---GVTNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
                + + EL +  N+IE L+   L  ++ +  LDL  NKL+++ PD+ I L SL+ LD
Sbjct: 260 EFPSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSV-PDEIILLRSLERLD 318

Query: 226 ISHNLLTTL 234
           +S+N +++L
Sbjct: 319 LSNNDISSL 327

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 20/249 (8%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           TDL  L ++NN+L+SL   L  L  L +L I  NQL +LPS ++    L  L  ++N++ 
Sbjct: 82  TDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLK 141

Query: 63  SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 122
                +  L  L+   +  N++T +  + F+ L NL+ + L NN++T++ +S S L+ L 
Sbjct: 142 IFPEEITNLRNLKCLYLQHNELTCI-SEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLV 200

Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG----------KNQVQ--- 169
            L LS NQL   L  +I  +KRL+ +D + N +        G          +N+++   
Sbjct: 201 RLNLSSNQLKS-LPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP 259

Query: 170 ---GVTNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
                + + EL +  N+IE L+   L  ++ +  LDL  NKL+++ PD+ I L SL+ LD
Sbjct: 260 EFPSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSV-PDEIILLQSLERLD 318

Query: 226 ISHNLLTTL 234
           +S+N +++L
Sbjct: 319 LSNNDISSL 327

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
242003810	543	leucine-rich transmembrane protein, puta	0.856	0.661	0.472	2e-78
193575713	577	PREDICTED: malignant fibrous histiocytom	0.832	0.604	0.451	1e-72
357612148	523	putative leucine-rich transmembrane prot	0.866	0.694	0.431	4e-71
157115103	630	leucine-rich transmembrane protein [Aede	0.785	0.522	0.435	3e-68
170045937	686	leucine-rich repeat-containing protein 4	0.785	0.479	0.438	1e-67
158295080	830	AGAP005962-PA [Anopheles gambiae str. PE	0.792	0.4	0.421	3e-63
270003207	584	hypothetical protein TcasGA2_TC002411 [T	0.723	0.518	0.485	6e-62
91080065	509	PREDICTED: similar to AGAP005962-PA [Tri	0.723	0.595	0.485	9e-62
332022789	618	Leucine-rich repeats and immunoglobulin-	0.859	0.582	0.391	1e-60
345497379	631	PREDICTED: leucine-rich repeats and immu	0.818	0.543	0.385	4e-58

>gi|242003810|ref|XP_002422869.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis] gi|212505751|gb|EEB10131.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/364 (47%), Positives = 231/364 (63%), Gaps = 5/364 (1%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLS-KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            L DL WLF+N N+L +L  QL   + KL LL    NQL  LP ++Q +  +GSL+  NN
Sbjct: 111 ALNDLEWLFINGNQLTTLYEQLPPEAPKLILLHAAHNQLTKLPVELQNYPIMGSLFFYNN 170

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
            I SLD +L+   +L+  ++  N+I  V  DEF     +D I L +N + ++N +   + 
Sbjct: 171 NIVSLDKVLQKSRRLRRLHLTHNKIHTVSDDEFAETELMDDIQLGHNHLKNLNRAFLPMR 230

Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
           +L  L L+HN L EF   +IRGL+ L+ VDLS+NKI++   + E  N V+  T + EL+L
Sbjct: 231 RLRSLNLTHNLLEEFSFQEIRGLQNLKIVDLSFNKISQLNGKME--NLVELETRVEELRL 288

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
           +HNEI+ L+G+LMGIHGL +L+LSHNKL TI+PDDFIGL+ L +LDIS+NLL TL+ETSK
Sbjct: 289 EHNEIKALEGSLMGIHGLQKLNLSHNKLMTIAPDDFIGLEDLTILDISYNLLQTLDETSK 348

Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299
           TFLP LEEL  ++N L  LDKDFHGLPVLCKA+L+ N I  I   L  KT+C++ G+   
Sbjct: 349 TFLPNLEELIANNNWLQVLDKDFHGLPVLCKAELSSNRIHTIGKDLISKTRCKVKGVYGI 408

Query: 300 LRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPT 359
           LRIYL  NPVLC        + ME   N TKIHG+    P    + TT     T++   T
Sbjct: 409 LRIYLHDNPVLCHPEFNQTAEYMEA--NATKIHGDFNICPVIEVSPTTGEPILTSSTNLT 466

Query: 360 PAPT 363
           P  T
Sbjct: 467 PPTT 470

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193575713|ref|XP_001949578.1| PREDICTED: malignant fibrous histiocytoma-amplified sequence 1-like [Acyrthosiphon pisum]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 228/354 (64%), Gaps = 5/354 (1%)

Query: 4   DLNWLFLNNNRLKSLEGQLGTLS-KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
           +L WL+L+NNRLK+L+G+L   + +L +L + +N+L  LP ++     L   Y + N++T
Sbjct: 222 ELEWLYLSNNRLKNLDGELPIDNDRLIVLDVSKNRLTHLPPELNCLKALRYFYCSFNQLT 281

Query: 63  SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 122
            L+  L    KL    +  N+I  +  DEF+    ++ + L NN I  +N SL  LT+L+
Sbjct: 282 GLNKTLSKSKKLVWLELTGNKIQELASDEFEEASMIEVLELSNNCIKHLNKSLLPLTQLS 341

Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
            +  S+N+LTEF L +I+GLK L+ VDLS+N I+K    +E  ++   VT I  LKL HN
Sbjct: 342 EINFSYNKLTEFSLAEIKGLKELKLVDLSHNTISKLSGHSEIISE--PVTGIEHLKLDHN 399

Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           E+E+L G+L+GI  L +L++SHNK   ISP D  GL SLK+LD+SHNLL  L ++S+  L
Sbjct: 400 ELESLGGSLIGIKTLVKLNISHNKFTDISPYDLTGL-SLKILDVSHNLLHILPDSSQINL 458

Query: 243 PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRI 302
           PALE L  S+N LT L KDF G PVLC ADL  NNI  I  +L   TQC++ G+NSTLRI
Sbjct: 459 PALETLVASYNVLTGLSKDFQGYPVLCHADLEFNNIMTIQEELVEMTQCKLHGVNSTLRI 518

Query: 303 YLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTP 356
           YLEGNPVLCDD+ + +  AME +N+N ++ G + C P +N+  T+  T    +P
Sbjct: 519 YLEGNPVLCDDNTKIITKAME-LNHNAEVSGASKCIPVTNDIKTSNLTAIDQSP 571

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612148|gb|EHJ67839.1| putative leucine-rich transmembrane protein [Danaus plexippus]

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 228/371 (61%), Gaps = 8/371 (2%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLV-IEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L  L+W+F+N N LKS++ +L   +K  +L+    N+L  LP D++    L SLY  +N 
Sbjct: 78  LDSLDWIFINANHLKSIDNELPVKAKKIVLIHAAHNELTNLPKDLRQMPSLESLYFYDNN 137

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I SLDG L+   +L+  ++ FN+I  +  DEF     L  + +  NQ+ S+N SL  L  
Sbjct: 138 IKSLDGALQKSRRLKTISLSFNKIESLAEDEFSEAEMLADLDIGYNQLRSLNGSLRALRS 197

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L YL L+HN LTEF L +I+GL+ L  +DLS+NKI K     E  N V   T + EL+L 
Sbjct: 198 LRYLNLTHNFLTEFSLQEIKGLRGLAVIDLSHNKITKISGSIE--NLVDVETRVMELRLN 255

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           HN I NL GALMG+ GL RL+LSHN+L+ IS DD IGL+ L++LD+S+N +TT+ +TSK 
Sbjct: 256 HNHILNLGGALMGLRGLLRLNLSHNQLQKISSDDLIGLEDLRLLDVSYNHITTMADTSKA 315

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
           FLP+LEEL   HN++T LDKDFHG P LC ADL++N I+++N ++  K++C I G+ S L
Sbjct: 316 FLPSLEELIAHHNNVTTLDKDFHGFPSLCIADLSYNEIQSVNYEVVSKSRCTINGVPSIL 375

Query: 301 RIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTP 360
           +IYL+GNPVLCD+ +  ++  +E  N N ++ G + C                  P+   
Sbjct: 376 KIYLQGNPVLCDERLYELVALLE--NLNARVSGVSTCVAAQTSAPVLMRALNDIVPD--- 430

Query: 361 APTSTTTQRST 371
           AP    T   T
Sbjct: 431 APVIVVTHMGT 441

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115103|ref|XP_001658113.1| leucine-rich transmembrane protein [Aedes aegypti] gi|108877017|gb|EAT41242.1| AAEL007087-PA [Aedes aegypti]

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 224/340 (65%), Gaps = 11/340 (3%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNR 60
           L +L  LF+N+N L SL+ +L   S   + +  QN +++ LP +I+    L SL+ N+N 
Sbjct: 108 LDELKLLFINDNHLTSLDDELPLASPNLITIFAQNNKIDHLPVEIKYLKNLDSLFINSNE 167

Query: 61  ITSLDGLLR---GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
           + S DGLL     LTKL   +   N+IT +RRDEF     L+ + L  N++TS+N SL  
Sbjct: 168 LQSFDGLLSRSAHLTKLVAVD---NKITHLRRDEFSEAERLEDLQLSENKLTSLNGSLLN 224

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           +  L     S N+L EF L +++GL++LR +DLS+N+I K   R E  N V   + I+EL
Sbjct: 225 MKGLIMANFSFNRLNEFSLQEVQGLRKLRILDLSHNRIEKLIGRME--NLVDSGSIIYEL 282

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           +LQHN I++LDG LMG++ L  L+++HN+L  I+PDD IG+++L+ LD+S N L TLEE 
Sbjct: 283 RLQHNLIKSLDGTLMGLNNLKILNVAHNRLEMITPDDLIGMENLEHLDLSFNKLKTLEEL 342

Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
           SKTFLP+L+ +  S+N LT +DKDFHGLPVLC ADL++N I+ ++++L  +T+C   G+ 
Sbjct: 343 SKTFLPSLQSVNASYNLLTTMDKDFHGLPVLCTADLSNNMIRVLSVELVSQTRCSNHGVP 402

Query: 298 STLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETIC 337
           + L I+L+ NPVLCD+S+  ++  ME+   +T++ G   C
Sbjct: 403 NKLEIFLQENPVLCDESLPELVSQMESY--HTRLIGIAHC 440

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045937|ref|XP_001850546.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus] gi|167868779|gb|EDS32162.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus]

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/340 (43%), Positives = 221/340 (65%), Gaps = 11/340 (3%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L +L  LF N+N L SL+ +L   S  L  +  + NQ++ LP +I+    L SL+ + NR
Sbjct: 161 LDELKLLFANDNHLTSLDDELPLASPNLMTIFAQNNQIDHLPIEIKYLKNLDSLFLHGNR 220

Query: 61  ITSLDGLLR---GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
           + S DGLL     LTKL  F+   N+I  +RRDEF     L+ + L  N++T++N SL  
Sbjct: 221 LKSFDGLLARSSQLTKLVAFD---NEINHLRRDEFIEAERLEDLQLAENKLTNLNGSLQN 277

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           +  L     S+N L EF L ++ GL++LR +DLS+NKI K   R E  N V   + I+EL
Sbjct: 278 MKGLIIANFSYNLLNEFSLQEVTGLRKLRILDLSHNKIEKLTGRME--NLVDSGSIIYEL 335

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           +LQHN +++LDG LMG++ L  L+++HN L TI+PDD IG+++L+ LD+S N L TLEE 
Sbjct: 336 RLQHNLLKSLDGTLMGLNNLKILNVAHNMLETITPDDLIGMENLEHLDLSFNKLNTLEEL 395

Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
           SKTFLP+L+ +  S+N LT +DKDFHGLPVLC ADL++N I+ +++ L  +T+C   G+ 
Sbjct: 396 SKTFLPSLQSVNASYNLLTTMDKDFHGLPVLCTADLSNNMIRVLSVDLVSQTRCSNHGVP 455

Query: 298 STLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETIC 337
           + L I+L+ NPVLCD+S+  ++  ME+   +T++ G   C
Sbjct: 456 NKLEIFLQENPVLCDESLPELVSQMESF--HTRLIGIAHC 493

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295080|ref|XP_316002.4| AGAP005962-PA [Anopheles gambiae str. PEST] gi|157015864|gb|EAA11826.4| AGAP005962-PA [Anopheles gambiae str. PEST]

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/337 (42%), Positives = 212/337 (62%), Gaps = 5/337 (1%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L +L  LF+N N L +L+G+L   S  L ++  + NQLE LP +++    L +L    NR
Sbjct: 204 LDELKLLFINENNLTTLDGELPLGSPNLMMITAQNNQLEQLPGELRFLKNLDNLCVPGNR 263

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           + SLDGLL   T L       NQI+ +RRDEF     L+ ++L  N + ++N SL     
Sbjct: 264 LRSLDGLLARATHLTKLLAQDNQISELRRDEFLEAERLEELNLAGNWLVNLNGSLLNCKG 323

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L     S N+L EF L ++ GL++LR +DLS+N+I     R E  N +     I EL+L 
Sbjct: 324 LINANFSENRLQEFSLQEVAGLRKLRLLDLSHNRIEVLSGRME--NMIDSGLIISELRLN 381

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           +N + +LDGALMG++ L  L+++HN+L+TI+P+D IG++ L+ LD+S N L TLEE SKT
Sbjct: 382 NNRLRSLDGALMGLNNLRILNVAHNELQTITPNDLIGMEELERLDLSFNQLKTLEELSKT 441

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
           FLP+LE L  S+N LT + KDFHGLP+LC ADL+ N I+ +++ L   T+C   G+ + L
Sbjct: 442 FLPSLESLNASYNQLTTMHKDFHGLPILCVADLSKNMIRELSVDLVSNTRCSNHGVPNRL 501

Query: 301 RIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETIC 337
            I+L+ NPVLC++S+  +I+ ME    +T+++G   C
Sbjct: 502 EIFLDENPVLCNESLPELINQMEFY--HTRLNGVAHC 536

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003207|gb|EEZ99654.1| hypothetical protein TcasGA2_TC002411 [Tribolium castaneum]

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 202/311 (64%), Gaps = 8/311 (2%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLG-TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L+DL WLF N+N L  LEG+L     KL+++    N++E LP  ++  + L SL+   N 
Sbjct: 276 LSDLIWLFANSNELTDLEGELPLDAKKLKMIHFSNNKIEKLPQQLKTLTYLESLFFQYNH 335

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I SLDG L    KL    ++ N I  + +++F     L+S+ L +N+ITS+N+SL  L  
Sbjct: 336 IQSLDGTLGKARKLVRVVLEHNNIKTLTKEDFTENEILESLILGHNEITSLNNSLLNLKN 395

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L +L ++ N L+EF   +I GL+ L+++DLSYN+I          N V+    + ELKL 
Sbjct: 396 LNFLNMTFNHLSEFSFQEIVGLQELKSIDLSYNRIKTL--IGPATNLVEWNIKLTELKLD 453

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           HNEIE+LDGAL G+  L RL+LS NKLR ISPDD IGLD L++LD+SHN LTTLEETSKT
Sbjct: 454 HNEIESLDGALSGLPELLRLNLSFNKLRRISPDDLIGLDQLRLLDVSHNYLTTLEETSKT 513

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF-----G 295
           FLP LEEL  SHN LT L++DFHGLPVLC ADL++N I A+   L  KT+C+I      G
Sbjct: 514 FLPRLEELRASHNYLTILERDFHGLPVLCHADLSNNQIVALGRDLVSKTRCKIGHGVHEG 573

Query: 296 LNSTLRIYLEG 306
              TL+IYL+ 
Sbjct: 574 TWDTLKIYLQA 584

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080065|ref|XP_966986.1| PREDICTED: similar to AGAP005962-PA [Tribolium castaneum]

 Score =  243 bits (621), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 202/311 (64%), Gaps = 8/311 (2%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L+DL WLF N+N L  LEG+L     KL+++    N++E LP  ++  + L SL+   N 
Sbjct: 201 LSDLIWLFANSNELTDLEGELPLDAKKLKMIHFSNNKIEKLPQQLKTLTYLESLFFQYNH 260

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I SLDG L    KL    ++ N I  + +++F     L+S+ L +N+ITS+N+SL  L  
Sbjct: 261 IQSLDGTLGKARKLVRVVLEHNNIKTLTKEDFTENEILESLILGHNEITSLNNSLLNLKN 320

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L +L ++ N L+EF   +I GL+ L+++DLSYN+I          N V+    + ELKL 
Sbjct: 321 LNFLNMTFNHLSEFSFQEIVGLQELKSIDLSYNRIKTL--IGPATNLVEWNIKLTELKLD 378

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           HNEIE+LDGAL G+  L RL+LS NKLR ISPDD IGLD L++LD+SHN LTTLEETSKT
Sbjct: 379 HNEIESLDGALSGLPELLRLNLSFNKLRRISPDDLIGLDQLRLLDVSHNYLTTLEETSKT 438

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF-----G 295
           FLP LEEL  SHN LT L++DFHGLPVLC ADL++N I A+   L  KT+C+I      G
Sbjct: 439 FLPRLEELRASHNYLTILERDFHGLPVLCHADLSNNQIVALGRDLVSKTRCKIGHGVHEG 498

Query: 296 LNSTLRIYLEG 306
              TL+IYL+ 
Sbjct: 499 TWDTLKIYLQA 509

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022789|gb|EGI63062.1| Leucine-rich repeats and immunoglobulin-like domains protein 3 [Acromyrmex echinatior]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 227/383 (59%), Gaps = 23/383 (6%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L  L WL +N+N L SL+G+L +    L++L    N+L  LP++ +   +L +L+   N+
Sbjct: 216 LNQLEWLLINSNELTSLDGELPSSGHNLKMLYAADNKLTHLPAEFRYLHRLETLFLQQNK 275

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--------- 111
           I +LDG L+   +L+   + +N++  +  D+F     L+ + L +N + S+         
Sbjct: 276 IRNLDGTLQKARRLKFLELSYNELQELNADDFLEAEMLEDLELGHNSLKSLGGADGDGNG 335

Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT-RNEGKNQVQ- 169
           +S+L  L  L  L L+HN+L EF L  +RGL+ L+ +DLS N+I +    R   +N V+ 
Sbjct: 336 SSALYPLRSLKCLNLTHNELREFSLASLRGLRELKLLDLSNNRIARLHRGRPSSENLVEE 395

Query: 170 -----GVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLR-TISPDDFIGLDSLK 222
                  + I +L+LQHNE+ +LDG+L +G+  L RL+LSHN L  TI P D  GLD L+
Sbjct: 396 EGEEIAGSTIQDLRLQHNELRSLDGSLFLGMKELQRLNLSHNALGPTIGPRDLRGLDGLR 455

Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAI 281
           +LDISHN LTTLE+TS+T+LP+LEEL  SHN L  L  +DF G PVLC AD++ N I+ +
Sbjct: 456 VLDISHNQLTTLEDTSETWLPSLEELNASHNRLVMLSGRDFRGFPVLCWADVSMNQIRTL 515

Query: 282 NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHG-ETICQPD 340
             +L   T+C I G+   LRIYL+ NPVLCD ++  +  A+E   N+ K++G  + C   
Sbjct: 516 MPELVANTRCTIHGVPDVLRIYLQDNPVLCDAALADLTVALEV--NHAKVYGVGSDCPTT 573

Query: 341 SNETSTTTTTTTTTTPEPTPAPT 363
           +  TS  T   T+  P+    PT
Sbjct: 574 TTPTSLMTVELTSALPQAPLPPT 596

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497379|ref|XP_003427975.1| PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 1-like isoform 1 [Nasonia vitripennis]

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 222/376 (59%), Gaps = 33/376 (8%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           L  L WL +N N L SL+G+L +    L++L    N+L  LP++ +   +L SL+  +N+
Sbjct: 230 LNQLEWLLINANELTSLDGELPSSGHNLKMLYAADNKLTHLPAEFRFLHRLESLFLQHNQ 289

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--------- 111
           I SLDG L+   +L+   + +N + ++  D+F     L+ + L +N++TS+         
Sbjct: 290 IGSLDGTLQKARRLKFLELSYNDLQVLTEDDFLEAEMLEDLELGHNKLTSLGGDGNVNAD 349

Query: 112 -----NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-GTRNEGK 165
                NS+L  L  L  L L+HN+L+EF    IRGL+ LR +DLS NKI +    R+  +
Sbjct: 350 GTTTANSALYPLKSLKCLNLTHNELSEFSFSSIRGLRELRMLDLSSNKIGRLLRGRSPTE 409

Query: 166 NQVQ------GVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLR-TISPDDFIG 217
           N V+         +I +++LQHNE+ NL+G+L +G+  L RL+LSHN L  TI+  D  G
Sbjct: 410 NLVEEEGEETAGASIQDMRLQHNELRNLEGSLFVGMKELQRLNLSHNALGPTIALRDLRG 469

Query: 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHN 276
           LD L++LD+S+N LTTLE+TS+T+LP+LEEL  SHN L  L ++DF G P LC  D++ N
Sbjct: 470 LDGLRVLDLSYNELTTLEDTSETWLPSLEELNASHNRLVTLSERDFRGFPGLCWVDVSDN 529

Query: 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETI 336
            I  +  +L   T+C + G+   LRIYL+ NPVLCD  +  +  A+E   N+ K++G   
Sbjct: 530 RISTLKPELVANTRCTVHGVPDVLRIYLQDNPVLCDAGLVDLTVALEV--NHAKVYGV-- 585

Query: 337 CQPDSNETSTTTTTTT 352
               +N+  T  + TT
Sbjct: 586 ----ANDCPTAPSPTT 597

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
FB|FBgn0052372	817	ltl "larval translucida" [Dros	0.787	0.403	0.324	1.9e-46
MGI|MGI:107935	1091	Lrig1 "leucine-rich repeats an	0.639	0.245	0.321	4e-25
UNIPROTKB|Q96JA1	1093	LRIG1 "Leucine-rich repeats an	0.639	0.245	0.317	2.2e-24
UNIPROTKB|Q7Z2Q7	622	LRRC70 "Leucine-rich repeat-co	0.720	0.485	0.277	1.9e-23
RGD|68429	603	Igfals "insulin-like growth fa	0.797	0.553	0.281	2.2e-23
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.715	0.496	0.292	2.9e-23
UNIPROTKB|F1LRE2	602	Igfals "Insulin-like growth fa	0.797	0.554	0.281	3.7e-23
UNIPROTKB|P35858	605	IGFALS "Insulin-like growth fa	0.794	0.550	0.293	3.7e-23
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.656	0.457	0.310	4.7e-23
UNIPROTKB|Q6UXM1	1119	LRIG3 "Leucine-rich repeats an	0.661	0.247	0.284	3.2e-22

FB|FBgn0052372 ltl "larval translucida" [Drosophila melanogaster (taxid:7227)]

 Score = 493 (178.6 bits), Expect = 1.9e-46, P = 1.9e-46
 Identities = 109/336 (32%), Positives = 191/336 (56%)

Query:     2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
             L +L  LF+N N + SL+ +L    +L+LL+   N+LE LP+++     L +++ + N++
Sbjct:   201 LHNLESLFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQL 260

Query:    62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
              S D +LR    L     D N++  + +DEF +   ++++ +  N I S+N SL  + KL
Sbjct:   261 RSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNYSLLPILKL 320

Query:   122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
                  S N + EF + ++ GL+ L+T+ LS N+I +      G  ++     +  L L +
Sbjct:   321 KNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELM----LVNLDLDN 376

Query:   182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
             N I++L+GAL G+  L  L+L+ N+L  +   DF G+  L +LD++ N L  L+    T 
Sbjct:   377 NRIDSLNGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTL 436

Query:   242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
             LP+L+ L V++N++T+L++DF GLPVLC+A+L +N I  I+ +L   T+C+   +   L 
Sbjct:   437 LPSLKILKVAYNNITKLEQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLE 496

Query:   302 IYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETIC 337
             I+L+ NP++CD  +  +   M       +I G + C
Sbjct:   497 IHLDDNPIMCDVGLNELCRLMAV--QEARIRGRSQC 530

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005615 "extracellular space" evidence=IDA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

MGI|MGI:107935 Lrig1 "leucine-rich repeats and immunoglobulin-like domains 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 4.0e-25, P = 4.0e-25
 Identities = 90/280 (32%), Positives = 148/280 (52%)

Query:     8 LFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
             L L+ NRL  ++      L+ LQ + +  N+L A+PS       + SL+  +N+I S+DG
Sbjct:    75 LNLSYNRLSEIDSAAFEDLTNLQEVYLNSNELTAIPSLGAASIGVVSLFLQHNKILSVDG 134

Query:    67 L-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTK-LAY 123
               L+    L+V ++  N IT +R   F N   +  ++L +N+I+ + S +  GL++ L  
Sbjct:   135 SQLKSYLSLEVLDLSSNNITEIRSSCFPNGLRIRELNLASNRISILESGAFDGLSRSLLT 194

Query:   124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183
             L LS N++T+  +   + L RL  +DL+ N+I       EG    QG+ ++  L+LQ N 
Sbjct:   195 LRLSKNRITQLPVKAFK-LPRLTQLDLNRNRIRLI----EGLT-FQGLDSLEVLRLQRNN 248

Query:   184 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
             I  L DGA  G+  +  L L +N L  ++     GL +L  L +S+N ++ ++    +F 
Sbjct:   249 ISRLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSISRIQRDGWSFC 308

Query:   243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
               L EL +S N+LTRLD++    L  L    L+HN I  I
Sbjct:   309 QKLHELILSFNNLTRLDEESLAELSSLSILRLSHNAISHI 348

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96JA1 LRIG1 "Leucine-rich repeats and immunoglobulin-like domains protein 1" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 2.2e-24, P = 2.2e-24
 Identities = 89/280 (31%), Positives = 145/280 (51%)

Query:     8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
             L L+ N+L  ++      L  LQ + +  N+L A+PS     S + SL+  +N+I S++G
Sbjct:    73 LNLSYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPSLGAASSHVVSLFLQHNKIRSVEG 132

Query:    67 L-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTK-LAY 123
               L+    L+V ++  N IT VR   F +   +  ++L  N+I ++   +  GL++ L  
Sbjct:   133 SQLKAYLSLEVLDLSLNNITEVRNTCFPHGPPIKELNLAGNRIGTLELGAFDGLSRSLLT 192

Query:   124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183
             L LS N++T+  +   + L RL  +DL+ N+I       EG    QG+ ++  LKLQ N 
Sbjct:   193 LRLSKNRITQLPVRAFK-LPRLTQLDLNRNRIRLI----EGLT-FQGLNSLEVLKLQRNN 246

Query:   184 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
             I  L DGA  G+  +  L L +N L  ++     GL +L  L +S+N +  +     +F 
Sbjct:   247 ISKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARIHRKGWSFC 306

Query:   243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
               L EL +S N+LTRLD++    L  L    L+HN+I  I
Sbjct:   307 QKLHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHI 346

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q7Z2Q7 LRRC70 "Leucine-rich repeat-containing protein 70" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 89/321 (27%), Positives = 156/321 (48%)

Query:     7 WLFLNNNRLKSL-EGQLGTLSKLQLLVIEQ-NQLEALPSDIQLFSQLGSLYANNNRITSL 64
             +L+L  N +  + E +L  L  L  L ++  N L   P        L  L+ NNN I  L
Sbjct:    64 FLYLTGNNISYINESELTGLHSLVALYLDNSNILYVYPKAFVQLRHLYFLFLNNNFIKRL 123

Query:    65 D-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLA 122
             D G+ +GL  L+   + +NQ++ V R  F +L ++  ++LQ N++T + S +  G+  L 
Sbjct:   124 DPGIFKGLLNLRNLYLQYNQVSFVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALR 183

Query:   123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
              L LS+N +        + L+ L  + L  N + K  +     N  + + ++  L L HN
Sbjct:   184 ILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPS-----NAFEVLKSLRRLSLSHN 238

Query:   183 EIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
              IE +   A  G+  L  L L ++++R ++ D F G+++LK L +SHN L  L   + + 
Sbjct:   239 PIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDGFSGINNLKHLILSHNDLENLNSDTFSL 298

Query:   242 LPALEELFVSHNSLTRLDKD-FHGLPVLCKA-DLAHNNIKAINIQLALKTQCQIFGLNST 299
             L  L  L +  N +  +D D F  +    K  +L+ NN+ A++ ++ LK       L+S 
Sbjct:   299 LKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTALHPRV-LKP------LSSL 351

Query:   300 LRIYLEGNPVLCDDSMRAVID 320
             + +    NP  C+  +  + D
Sbjct:   352 IHLQANSNPWECNCKLLGLRD 372

GO:0016021 "integral to membrane" evidence=IEA

RGD|68429 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 101/359 (28%), Positives = 172/359 (47%)

Query:     1 GLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 58
             GL +L  L L+ N L+S++  +   L +LQ L +++N + A+ P        L  L  ++
Sbjct:   216 GLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSH 275

Query:    59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
             NR+  L +    GL  L V  +  N I  +R   F++LH L+ + L +N+I  +   +  
Sbjct:   276 NRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTFE 335

Query:   117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
             GL +L  L L+ NQ+TE  +    GL  +  ++LS N +     R       QG+  +  
Sbjct:   336 GLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPER-----VFQGLDKLHS 390

Query:   177 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
             L L+H+ + ++      G+ GL RL L  N + +I      GL  L  LD++ N LT L 
Sbjct:   391 LHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLP 450

Query:   236 ETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVLCKADLAHNNIKAI---------NIQ- 284
                   L  LE L +S+N LT L  +  G L      D++HN+++ +          ++ 
Sbjct:   451 RQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRVRY 510

Query:   285 LALKTQC-QIFGLNSTL-RIYLEGNPVLCDDSMRAVID-AMETINNNTKIHGETICQPD 340
             L+L+    Q F     L R++L+ NP  C   ++A+ D A++      +   +T+C+ D
Sbjct:   511 LSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFV-QTVCEGD 568

GO:0005520 "insulin-like growth factor binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0042567 "insulin-like growth factor ternary complex" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 97/332 (29%), Positives = 164/332 (49%)

Query:     2 LTDLNWLFLNNNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQL-FSQLGSLYANN 58
             L  L  L+LNNN++ ++  +  +G +  L+ L +  N+L +L  D  L    L  L  + 
Sbjct:   236 LQKLQKLYLNNNQINAIAPRAFMG-MKSLRWLDLSHNRLTSLYEDTFLGLLSLHVLRLST 294

Query:    59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
             N ITSL     + L  L+   +  N+I  +    F  L  L+ +SL NNQ+  + + +  
Sbjct:   295 NSITSLRPRTFKDLQFLEELQLGHNRIWSLAERTFDGLGQLEVLSLNNNQLQDIKAGAFL 354

Query:   117 GLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
             GL  +A ++LS N    L E++ +   G+ +L ++ L ++ ++K        N    +T+
Sbjct:   355 GLYNVAVMHLSANCIKTLPEYVFE---GVTKLHSLHLEHSCLSKIRA-----NTFSSLTS 406

Query:   174 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
             +  L LQHN I  + D +   +H L  LDL HN+L  +SP  F+GL +L+ L +S N + 
Sbjct:   407 LRRLFLQHNAISTIEDQSFRELHELLELDLKHNRLSHLSPQLFVGLSNLEYLFLSFNQIM 466

Query:   233 TLEETSKTFLPALEELF---VSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALK 288
              + +   TF P L  LF   +SHN L  LD      L  L    L +N+++  ++     
Sbjct:   467 DISQN--TFSP-LRRLFWLDLSHNQLATLDNAVITQLANLRYLSLRNNSLETFSVGFL-- 521

Query:   289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVID 320
               C  F L    +++L GN   C+ S++ + D
Sbjct:   522 --CPSFTLE---QLWLGGNNWHCNCSLKGLRD 548

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1LRE2 Igfals "Insulin-like growth factor-binding protein complex acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 3.7e-23, P = 3.7e-23
 Identities = 101/359 (28%), Positives = 172/359 (47%)

Query:     1 GLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 58
             GL +L  L L+ N L+S++  +   L +LQ L +++N + A+ P        L  L  ++
Sbjct:   215 GLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSH 274

Query:    59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
             NR+  L +    GL  L V  +  N I  +R   F++LH L+ + L +N+I  +   +  
Sbjct:   275 NRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTFE 334

Query:   117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
             GL +L  L L+ NQ+TE  +    GL  +  ++LS N +     R       QG+  +  
Sbjct:   335 GLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPER-----VFQGLDKLHS 389

Query:   177 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
             L L+H+ + ++      G+ GL RL L  N + +I      GL  L  LD++ N LT L 
Sbjct:   390 LHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLP 449

Query:   236 ETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVLCKADLAHNNIKAI---------NIQ- 284
                   L  LE L +S+N LT L  +  G L      D++HN+++ +          ++ 
Sbjct:   450 RQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRLRY 509

Query:   285 LALKTQC-QIFGLNSTL-RIYLEGNPVLCDDSMRAVID-AMETINNNTKIHGETICQPD 340
             L+L+    Q F     L R++L+ NP  C   ++A+ D A++      +   +T+C+ D
Sbjct:   510 LSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFV-QTVCEGD 567

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P35858 IGFALS "Insulin-like growth factor-binding protein complex acid labile subunit" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 3.7e-23, P = 3.7e-23
 Identities = 106/361 (29%), Positives = 169/361 (46%)

Query:     1 GLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 58
             GL +L  L L+ N L++++  +   L +LQ L +++N + A+ P        L  L  ++
Sbjct:   216 GLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSH 275

Query:    59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
             NR+  L +    GL  L+V  +  N I  +R   F++LH L+ + L +N+I  +   S  
Sbjct:   276 NRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFE 335

Query:   117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
             GL +L  L L HNQL E       GL  +  ++LS N +     RN  +   +G+  +  
Sbjct:   336 GLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCL-----RNLPEQVFRGLGKLHS 390

Query:   177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
             L L+ + +  +      G+ GL RL L  N L  I      GL  L  LD++ N LT L 
Sbjct:   391 LHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLP 450

Query:   236 ETSKTFLPALEELFVSHNSLTRLDKDFHG-LPVLCKADLAHNNIKAI-NIQLALKTQCQI 293
                   L  LE L +S N L  L  D  G L      D++HN ++A+ N  LA   + + 
Sbjct:   451 HRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRY 510

Query:   294 FGL-NSTLR-----------IYLEGNPVLCDDSMRAVIDAMETINNNTKIHG--ETICQP 339
               L N++LR           ++LEGNP  C   ++A+ D    + N + +    + IC+ 
Sbjct:   511 LSLRNNSLRTFTPQPPGLERLWLEGNPWDCGCPLKALRDF--ALQNPSAVPRFVQAICEG 568

Query:   340 D 340
             D
Sbjct:   569 D 569

GO:0007155 "cell adhesion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0005520 "insulin-like growth factor binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 89/287 (31%), Positives = 142/287 (49%)

Query:     3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
             TDL  L L++N+L+S+   +  L  L +L I  NQL +LP  I    QL  L  ++N++T
Sbjct:    80 TDLTKLLLSSNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLT 139

Query:    63 SL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
              L  G+ R LT L+  ++  N I  + RD  Q L NLD + L NN +  +  SL+ L  L
Sbjct:   140 ELPSGVWR-LTNLRCLHLQQNLIEQIPRDLGQ-LVNLDELDLSNNHLIDIPESLANLQNL 197

Query:   122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
               L LS N+L   L   I  +K LR +D S N++            +  + ++ +L L+H
Sbjct:   198 VKLDLSCNKLKS-LPPAISQMKNLRMLDCSRNQMESIPP------VLAQMESLEQLYLRH 250

Query:   182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
             N++  L   L     L  L   +N++  +  +    L++L +L++  N + +L E   T 
Sbjct:   251 NKLRYLP-ELPCCKTLKELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEI-TL 308

Query:   242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALK 288
             L  LE L +++N ++ L      LP L    L  N ++AI   L  K
Sbjct:   309 LQGLERLDLTNNDISSLPCGLGTLPKLKSLSLEGNPLRAIRRDLLTK 355

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q6UXM1 LRIG3 "Leucine-rich repeats and immunoglobulin-like domains protein 3" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 83/292 (28%), Positives = 146/292 (50%)

Query:     5 LNWLFLNNNRLKSLE-GQLGTLSK-LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
             L +L+LN+NR+ S+E G    L+  L +L + +N++ A+P  +    QL  L  N N+I 
Sbjct:   169 LKYLYLNSNRVTSMEPGYFDNLANTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIK 228

Query:    63 SLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTK 120
             ++DGL  +GL  L+   M  N +T +    F  L N++ + L +N +T +    L GL  
Sbjct:   229 NVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLM 288

Query:   121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
             L  L+LS N +     D     ++L  +DL++N +++        +   G++ +  L + 
Sbjct:   289 LQELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDD-----SSFLGLSLLNTLHIG 343

Query:   181 HNEIENL-DGALMGIHGLSRLDLSHNKLR-TISPDD--FIGLDSLKMLDISHNLLTTLEE 236
             +N +  + D A  G+  L  LDL +N++  TI   +  F GLD L+ L +  N + ++ +
Sbjct:   344 NNRVSYIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITK 403

Query:   237 TSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALK 288
              + T L ALE L +S N++  L  +      + K    H N  ++     LK
Sbjct:   404 KAFTGLDALEHLDLSDNAIMSLQGN--AFSQMKKLQQLHLNTSSLLCDCQLK 453

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	419
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
COG3889	872	COG3889, COG3889, Predicted solute binding protein	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
pfam01456	143	pfam01456, Mucin, Mucin-like glycoprotein	4e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-06
COG3889	872	COG3889, COG3889, Predicted solute binding protein	1e-05
COG3889	872	COG3889, COG3889, Predicted solute binding protein	2e-05
COG3889	872	COG3889, COG3889, Predicted solute binding protein	7e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	9e-05
pfam01456	143	pfam01456, Mucin, Mucin-like glycoprotein	2e-04
COG3889	872	COG3889, COG3889, Predicted solute binding protein	8e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-04
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	9e-04
pfam01034	207	pfam01034, Syndecan, Syndecan domain	9e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.002
PHA03273	486	PHA03273, PHA03273, envelope glycoprotein C; Provi	0.002
pfam05086	910	pfam05086, Dicty_REP, Dictyostelium (Slime Mold) R	0.002
TIGR04216	782	TIGR04216, halo_surf_glyco, major cell surface gly	0.003
pfam05283	187	pfam05283, MGC-24, Multi-glycosylated core protein	0.003
pfam00513	466	pfam00513, Late_protein_L2, Late Protein L2	0.004
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 82/264 (31%), Positives = 119/264 (45%), Gaps = 10/264 (3%)

Query: 6   NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 65
             L L++N L  L   L  L  L LL            ++     L SL  N NR+ S  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 66  GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 125
             L  LT L   ++D N IT +         NL  + L +N+I S+ S L  L  L  L 
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169

Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
           LS N L++ L   +  L  L  +DLS NKI+      E  +       + EL L +N I 
Sbjct: 170 LSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLS------ALEELDLSNNSII 222

Query: 186 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL 245
            L  +L  +  LS L+LS+NKL  + P+    L +L+ LD+S+N ++++       L  L
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISSLGS--LTNL 279

Query: 246 EELFVSHNSLTRLDKDFHGLPVLC 269
            EL +S NSL+        L +L 
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 11/235 (4%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  L+ L  +          L  L  L  L +  N+L +  S++   + L SL  +NN 
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN 127

Query: 61  ITSLDGLLRGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           IT +  L+  L   L+  ++  N+I  +     +NL NL ++ L  N ++ +   LS L+
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186

Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  L LS N++++ L  +I  L  L  +DLS N I +        + +  + N+  L+L
Sbjct: 187 NLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIEL------LSSLSNLKNLSGLEL 239

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
            +N++E+L  ++  +  L  LDLS+N++ +IS      L +L+ LD+S N L+  
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
            L  LDLS+N+L  I    F GL +LK+LD+S N LT++   + + LP+L  L +S N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 176 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
            L L +N +  + DGA  G+  L  LDLS N L +ISP+ F GL SL+ LD+S N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 77/310 (24%), Positives = 133/310 (42%), Gaps = 29/310 (9%)

Query: 12  NNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSL--DGLL 68
           NN    +   L +L +LQ+L +  N+    +P ++   + L  L  + N +T    +GL 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 69  RG--LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY- 125
               L KL +F+   N +            +L  + LQ+N  +    S    TKL  +Y 
Sbjct: 378 SSGNLFKLILFS---NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYF 432

Query: 126 --LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183
             +S+N L   +      +  L+ + L+ NK   FG    G     G   +  L L  N+
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKF--FG----GLPDSFGSKRLENLDLSRNQ 486

Query: 184 I-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
               +   L  +  L +L LS NKL    PD+      L  LD+SHN L+     S + +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 243 PALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P L +L +S N L+  + K+   +  L + +++HN++       +L +      +N++  
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG-----SLPSTGAFLAINASA- 600

Query: 302 IYLEGNPVLC 311
             + GN  LC
Sbjct: 601 --VAGNIDLC 608

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 55/186 (29%), Positives = 77/186 (41%), Gaps = 3/186 (1%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L  L L+ N L  L   L  LS L  L +  N++  LP +I+L S L  L  +NN I
Sbjct: 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
             L   L  L  L    +  N++  +  +   NL NL+++ L NNQI+S+ SSL  LT L
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI-SSLGSLTNL 279

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
             L LS N L+  L      L  L    L+     K          +             
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLEL-LLNLLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 182 NEIENL 187
             +  L
Sbjct: 339 EALSIL 344

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 35/250 (14%)

Query: 11  NNNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITS-LDGLL 68
           NNN   S+    G++  L+ L +  N L   +P+DI  FS L  L    N +   +   L
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 69  RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-----------QITSMN----- 112
             LT L+   +  NQ+      E   + +L  I L  N            +TS+N     
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 113 ---------SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
                    SSL  L  L YL+L  N+L+  +   I  L++L ++DLS N ++  G   E
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS--GEIPE 302

Query: 164 GKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
              Q+Q   N+  L L  N     +  AL  +  L  L L  NK     P +    ++L 
Sbjct: 303 LVIQLQ---NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 223 MLDISHNLLT 232
           +LD+S N LT
Sbjct: 360 VLDLSTNNLT 369

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 73  KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQL 131
            L+  ++  N++T++    F+ L NL  + L  N +TS++  + SGL  L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 97  NLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
           NL S+ L NN++T +   +  GL  L  L LS N LT    +   GL  LR++DLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
           +LK LD+S+N LT + + +   LP L+ L +S N+LT +  + F GLP L   DL+ NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 329 TKIHGETICQPDSNETST-----TTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTT 381
           T  +          ET++     T T T TTT  P+P  T++ TQ ST++TTT +P+ 
Sbjct: 786 TLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQ 843

Length = 872

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 50  QLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
            L SL  +NNR+T + DG  +GL  L+V ++  N +T +  + F  L +L S+ L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 28/303 (9%)

Query: 2   LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNN 59
           L +L +LFL  N+L   +   + +L KL  L +  N L   +P  +     L  L+  +N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 60  RIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSG 117
             T  +   L  L +LQV  +  N+ +          +NL  + L  N +T  +   L  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK-----------N 166
              L  L L  N L   +   +   + LR V L  N  +        K           N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 167 QVQGVTNIFELKLQHNEIENLDGA----------LMGIHGLSRLDLSHNKLRTISPDDFI 216
            +QG   I   K     ++ L  A            G   L  LDLS N+     P    
Sbjct: 439 NLQG--RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496

Query: 217 GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAH 275
            L  L  L +S N L+       +    L  L +SHN L+ ++   F  +PVL + DL+ 
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

Query: 276 NNI 278
           N +
Sbjct: 557 NQL 559

Length = 968

>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 326 NNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
           +       E   Q  +  T+TT  TTTTTT   T   T+TTT+ +TT+TTT T TT  + 
Sbjct: 32  DAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEA 91

Query: 386 EYTETITLELPQPVET 401
               T T E P   +T
Sbjct: 92  PSKNTTTSEAPTTTDT 107

This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 23/153 (15%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           ++L  L+  NN+L SL     TL S LQ L +  NQL +LP+   L S+L  L+A NNR+
Sbjct: 322 SELCKLWAYNNQLTSLP----TLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRL 374

Query: 62  TSLDGLLRG----------LTKLQVFNMDFNQITMVRRDEFQNL----HNLDSISLQNNQ 107
           TSL  L  G          LT L V   +  ++ MV  +   +L      L S+S+  NQ
Sbjct: 375 TSLPALPSGLKELIVSGNRLTSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRNQ 433

Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 140
           +T +  SL  L+    + L  N L+E  L  +R
Sbjct: 434 LTRLPESLIHLSSETTVNLEGNPLSERTLQALR 466

Length = 788

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 344 TSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPT 380
            + T TTT++ +P  T +PT T+T  +TT++ +QT T
Sbjct: 810 VTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTT 846

Length = 872

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 344 TSTTTTT-TTTTTPEPTPAPTSTTTQRSTTSTTTQTPTT 381
           T T T T TTT++P PT   + T T  STT+TT+ + TT
Sbjct: 807 TKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTT 845

Length = 872

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 14/90 (15%)

Query: 318 VIDAMETINNNTKIHGETICQPDSNETSTTTT-------------TTTTTTPEPTPAPTS 364
           ++D       +    G    +   + T T TT              TT+     T   T 
Sbjct: 755 IMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQ 814

Query: 365 TTTQRSTTSTTTQTPTTPIQEEYTETITLE 394
           TTT  S + T T +PT       T T   +
Sbjct: 815 TTTS-SPSPTQTTSPTQTSTSTTTTTSPSQ 843

Length = 872

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 49/232 (21%)

Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
           L+++ N+L++LP ++Q    + +LYAN+N++TS+   L     +Q   +  N+IT +   
Sbjct: 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPER 259

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
               L +LD   L +N+I+ +  +L                           + LR + +
Sbjct: 260 LPSALQSLD---LFHNKISCLPENLP--------------------------EELRYLSV 290

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
             N I                + I  L +Q N +  L   L    GL  L+   N L T 
Sbjct: 291 YDNSIRTLPAHLP--------SGITHLNVQSNSLTALPETLP--PGLKTLEAGENAL-TS 339

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF 262
            P        L++LD+S N +T L ET     P +  L VS N+LT L ++ 
Sbjct: 340 LPASLP--PELQVLDVSKNQITVLPET---LPPTITTLDVSRNALTNLPENL 386

Length = 754

>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 30/58 (51%)

Query: 349 TTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETNNQIP 406
           TTTTTTT  P    T+TTT  +T +TTT   TT      T T T E P    T ++ P
Sbjct: 45  TTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAP 102

This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 344 TSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQT 378
           T+++ + T TT+P  T   T+TTT  S + TTT  
Sbjct: 816 TTSSPSPTQTTSPTQTSTSTTTTT--SPSQTTTGG 848

Length = 872

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
           T L  L LS+NQ+T+  L  +  L  L T+DLS NKI   
Sbjct: 1   TNLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKITDL 38

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 332 HGETICQPDSNETSTTTTTTTTTTPE-------PTPAPTSTTTQRSTTSTTTQTPTTPIQ 384
             E I       ++    TT   +          TP   +T  +  ++S T +T     +
Sbjct: 27  QAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSE 86

Query: 385 EEYTETITLELPQPVETNNQIPVQ 408
              T T       P  T    PV+
Sbjct: 87  ATDTTTSEARTVTPAATETSKPVE 110

Length = 814

>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 15/44 (34%), Positives = 18/44 (40%)

Query: 339 PDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTP 382
             S    TTT +T+T T        +TTT  S T T   T T  
Sbjct: 84  SSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVS 127

Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 13/107 (12%)

Query: 28  LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 87
           LQ L +  NQL +LP+   L S+L  L+A NN++TSL  L  GL +L V +     +  +
Sbjct: 304 LQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL 360

Query: 88  RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 134
             + ++       +   NN++TS+ +  SGL +L    +S N+LT  
Sbjct: 361 PSELYK-------LWAYNNRLTSLPALPSGLKELI---VSGNRLTSL 397

Length = 788

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 28/258 (10%)

Query: 51  LGSLYANNNRITSLD-----------GLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNL 98
            G    N++R+ S+D             +  L  +Q  N+  NQ++  +  D F    +L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 99  DSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
             ++L NN  T      S+  L  L    LS+N L+  + +DI     L+ +DL  N + 
Sbjct: 121 RYLNLSNNNFTGSIPRGSIPNLETLD---LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 157 KFGTRNEGK--NQVQGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPD 213
                  GK  N +  +T++  L L  N++       +G +  L  + L +N L    P 
Sbjct: 178 -------GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKAD 272
           +  GL SL  LD+ +N LT    +S   L  L+ LF+  N L+  +      L  L   D
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 273 LAHNNIKAINIQLALKTQ 290
           L+ N++     +L ++ Q
Sbjct: 291 LSDNSLSGEIPELVIQLQ 308

Length = 968

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 15/83 (18%)

Query: 341 SNETSTTTTTTTTTTPEPTPAPTSTT---------------TQRSTTSTTTQTPTTPIQE 385
              TS TT+ T T     +P  T TT               T    T T TQT TT    
Sbjct: 761 GTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSP 820

Query: 386 EYTETITLELPQPVETNNQIPVQ 408
             T+T +        T    P Q
Sbjct: 821 SPTQTTSPTQTSTSTTTTTSPSQ 843

Length = 872

>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 335 TICQPDSN--ETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETI- 391
           +I   D++  E  +T  T T TT   T +P  T T  ST +  T++ T   Q    ET  
Sbjct: 33  SIENSDNSTAEMQSTPATPTHTTSNLT-SPFGTGTDNSTNANGTESTTQASQPHSHETTI 91

Query: 392 -----TLELP--QPVETNNQIPVQDN 410
                 + +P  + V+ N    V  N
Sbjct: 92  TCTKSLISVPYYKSVDMNCTTSVGVN 117

Length = 486

>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 343 ETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETN 402
           + S  +        +P+  P +TTT  +TT+TTT  P T  + +  +   L L Q  E  
Sbjct: 233 QISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRT-RKRKSIDDHKLSLNQAPEKF 291

Query: 403 NQIPVQDNLEKEKQPD 418
                 D+  +    D
Sbjct: 292 KNNTKPDDDPQSDFSD 307

This family consists of REP proteins from Dictyostelium (Slime molds). REP protein is likely involved in transcription regulation and control of DNA replication, specifically amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity. Length = 910

>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 338 QPD---SNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTP 382
           +PD   S + +TTTT TTT   E T     TTT    T  TT   +TP
Sbjct: 713 RPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760

Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail. Length = 782

>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24)

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 341 SNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTET 390
           S  T+T   T +T  P  TP+PT++    ++   T  T T   Q +   T
Sbjct: 109 SVATTTPVPTNSTAKPTITPSPTTSHHHVTSEPKTNTTVTPTSQPDRKST 158

This family consists of several MGC-24 (or Cd164 antigen) proteins from eukaryotic organisms. MGC-24/CD164 is a sialomucin expressed in many normal and cancerous tissues. In humans, soluble and transmembrane forms of MGC-24 are produced by alternative splicing. Length = 187

>gnl|CDD|215964 pfam00513, Late_protein_L2, Late Protein L2

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 339 PDSNETSTTTTTTTTTTPEPTPA---PTSTTTQRSTTSTTTQTPTTPIQEEYTETITLEL 395
           P        +    TT+   TPA    T TT     + T    P       +T+   L+ 
Sbjct: 116 PIPPIPGDGSGFPITTSSTTTPAILDVTPTTRTVHVSRTQYNNPL------FTDPSVLQP 169

Query: 396 PQPVETNNQI 405
           PQP E +  +
Sbjct: 170 PQPAEVSGHV 179

Length = 466

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 345 STTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTET 390
            +TT      T      P +T+ +RS  ST T  PTT  QE    T
Sbjct: 258 QSTTGDGQEHTQRRK-TPPATSNRRSPHSTATPPPTTKRQETGRPT 302

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4237|consensus	498		99.97
KOG0444|consensus	1255		99.96
KOG0472|consensus	565		99.96
KOG0444|consensus	1255		99.96
KOG0472|consensus	565		99.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.9
KOG0618|consensus	1081		99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0618|consensus	1081		99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237|consensus	498		99.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.81
KOG0617|consensus	264		99.74
KOG0617|consensus	264		99.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.5
KOG0532|consensus	722		99.5
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.47
KOG1909|consensus	382		99.46
KOG0532|consensus	722		99.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.43
KOG3207|consensus	505		99.43
KOG0531|consensus	414		99.42
KOG1259|consensus	490		99.4
KOG0531|consensus	414		99.39
KOG1259|consensus	490		99.39
KOG1909|consensus	382		99.36
KOG3207|consensus	505		99.36
KOG1859|consensus	1096		99.22
KOG4658|consensus	889		99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
PLN03150	623	hypothetical protein; Provisional	98.96
KOG4658|consensus	889		98.93
KOG1859|consensus	1096		98.87
PLN03150	623	hypothetical protein; Provisional	98.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.76
KOG4579|consensus	177		98.74
KOG2982|consensus	418		98.72
KOG2120|consensus	419		98.64
KOG1644|consensus	233		98.64
KOG2982|consensus	418		98.63
KOG1644|consensus	233		98.58
KOG2120|consensus	419		98.57
KOG4579|consensus	177		98.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
PRK15386	426	type III secretion protein GogB; Provisional	98.14
KOG3665|consensus	699		98.12
PRK15386	426	type III secretion protein GogB; Provisional	98.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.02
KOG2123|consensus	388		98.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.98
KOG2123|consensus	388		97.97
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.94
KOG4341|consensus	483		97.87
KOG3665|consensus	699		97.86
KOG2739|consensus	260		97.74
KOG2739|consensus	260		97.63
KOG4341|consensus	483		97.6
KOG4308|consensus	478		97.31
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	96.88
KOG1947|consensus	482		96.79
KOG0473|consensus	326		96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.3
KOG1947|consensus	482		96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.05
KOG4308|consensus	478		95.95
KOG0473|consensus	326		95.45
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.97
smart00370	26	LRR Leucine-rich repeats, outliers.	93.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.68
smart00370	26	LRR Leucine-rich repeats, outliers.	93.68
KOG3864|consensus	221		93.4
KOG3864|consensus	221		88.65
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.8
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.5
KOG3763|consensus	585		81.34
KOG3763|consensus	585		80.1

>KOG4194|consensus

Probab=100.00  E-value=4.7e-42  Score=318.28  Aligned_cols=308  Identities=28%  Similarity=0.425  Sum_probs=177.9

Q ss_pred             CcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257           5 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF   81 (419)
Q Consensus         5 L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~   81 (419)
                      |+.|+|.+|.|+++. +.+..++.|+.|||+.|.|++|+. .|..-.++++|+|++|+|+.+. +.|.++.+|..|.|++
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            455555555555443 334445555555555555554433 2444444555555555555443 3444444455555555


Q ss_pred             CCCcccChhhhc------------------------CCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccCh
Q psy4257          82 NQITMVRRDEFQ------------------------NLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLL  136 (419)
Q Consensus        82 n~l~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~  136 (419)
                      |+|+.++...|.                        ++++|+.|.|..|.|..+. ..|..+.++++|+|..|+++....
T Consensus       207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence            555555444444                        4444444555555444442 344555555555555555555555


Q ss_pred             hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccC
Q psy4257         137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF  215 (419)
Q Consensus       137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~  215 (419)
                      +.+.+++.|+.|++++|.|..+...     .+....+|++|+|+.|+|+.++ +.|..+..|++|+|++|.+..+...+|
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d-----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHID-----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             ccccccchhhhhccchhhhheeecc-----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            5555555555666666655554332     4455566666666666666654 455556666666666666666666666


Q ss_pred             CCCCCCcEEEccCCcCccc---CchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhccc
Q psy4257         216 IGLDSLKMLDISHNLLTTL---EETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQC  291 (419)
Q Consensus       216 ~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  291 (419)
                      .++++|++|||++|.+...   ....|.++++|+.|.|.+|+|..|+ ++|.++.+|++|||.+|.|..|.+..+..   
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~---  438 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP---  438 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc---
Confidence            6666666666666665532   2234556666666666666666666 45666666777777777666666654432   


Q ss_pred             ceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257         292 QIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI  325 (419)
Q Consensus       292 ~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~  325 (419)
                          + .|++|-+..-.+.|||++.|+..|+...
T Consensus       439 ----m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~  467 (873)
T KOG4194|consen  439 ----M-ELKELVMNSSSFLCDCQLKWLAQWLYRR  467 (873)
T ss_pred             ----c-hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence                3 5566666666678999999999999874

>KOG4194|consensus

Probab=100.00  E-value=1.1e-38  Score=295.89  Aligned_cols=299  Identities=28%  Similarity=0.387  Sum_probs=209.6

Q ss_pred             CCCCCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257           1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN   78 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~   78 (419)
                      ++++|+++++..|.++.+|.......+|+.|+|.+|.|+++. +.++.++.|+.|||+.|.|+.|+ ..|..-.++++|+
T Consensus       100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~  179 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN  179 (873)
T ss_pred             cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence            356777777777777777664444566777777777777663 35777777888888888888776 4566667888888


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      |++|.|+.+..+.|.++.+|..|.|++|+|+.+| ..|+++++|+.|+|..|+|.-...-.|.++++|+.|.|..|+|..
T Consensus       180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k  259 (873)
T KOG4194|consen  180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK  259 (873)
T ss_pred             eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence            8888888888888888888888888888888886 467778888888888888776556677888888888888887777


Q ss_pred             ccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257         158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  236 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  236 (419)
                      +...     .|-.+.++++|+|..|++.++. +++.++..|++|+|++|.|..+.++.+..+++|++|+|++|+|+.+++
T Consensus       260 L~DG-----~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  260 LDDG-----AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             ccCc-----ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            6554     4556666777777777666664 455666666666666666666666666666666666666666666655


Q ss_pred             hhcc------------------------CCCCCceEeCcCCccccc-C---ccCCCCCCcCEEecCCCcccccchhhhhh
Q psy4257         237 TSKT------------------------FLPALEELFVSHNSLTRL-D---KDFHGLPVLCKADLAHNNIKAINIQLALK  288 (419)
Q Consensus       237 ~~~~------------------------~l~~L~~L~L~~N~i~~l-~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (419)
                      ..|.                        ++.+|+.|||++|.|+.. .   ..|.++++|+.|++.+|+|+.|+...   
T Consensus       335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA---  411 (873)
T KOG4194|consen  335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA---  411 (873)
T ss_pred             hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh---
Confidence            5554                        445555555555555432 1   23566666666666666666666553   


Q ss_pred             cccceecCCcceeEEecCCcccc
Q psy4257         289 TQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       289 ~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                          +.++++|+.|+|.+|++..
T Consensus       412 ----fsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  412 ----FSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             ----hccCcccceecCCCCccee
Confidence                4468888889998888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.98  E-value=1.9e-31  Score=284.93  Aligned_cols=280  Identities=25%  Similarity=0.327  Sum_probs=172.0

Q ss_pred             CCCCcEEeccccccc-ccccccccccccceeecccccCc-cCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~   78 (419)
                      +++|++|+|++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|+.|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            567788888888776 45666777778888888877776 556677777777777777777764 566677777777777


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +++|++.+..+..|.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            7777777766677777777777777777765 456666777777777777777766666666666677777777666553


Q ss_pred             ccCCC-------------------CCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcccCCC
Q psy4257         158 FGTRN-------------------EGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIG  217 (419)
Q Consensus       158 ~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  217 (419)
                      ..+..                   .....+..+++|+.|++++|.+. .+|..+..+.+|+.|++++|.+.+..|..+..
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence            32110                   00112333444444444444443 23344444444555555555444444444444


Q ss_pred             CCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCccccc
Q psy4257         218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       218 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                      +.+|+.|++++|.+.+..+..+..+++|+.|++++|++.+ +|..|..++.|+.|++++|.+.+.
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence            4444444444444444444445556666666666666654 445566666666666666666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.4e-31  Score=284.08  Aligned_cols=301  Identities=23%  Similarity=0.282  Sum_probs=203.5

Q ss_pred             CCCCcEEeccccccc-ccccccccccccceeecccccCc-cCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~   78 (419)
                      +++|++|++++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+.+ ++..+..+++|+.|+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            566777777777765 44555666777777777777766 456666667777777777776664 455566666677777


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccc------------------------cCCccCcEEecccccccc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSL------------------------SGLTKLAYLYLSHNQLTE  133 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l------------------------~~l~~L~~L~l~~n~l~~  133 (419)
                      +++|.+.+..+..+..+.+|+.|++++|++. .+|..+                        ..+++|+.|++++|.+.+
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            7777666666666666666666666666654 234444                        444455555555555554


Q ss_pred             cChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcc
Q psy4257         134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  213 (419)
Q Consensus       134 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  213 (419)
                      ..+..|..+++|+.|++++|.+.+....     .+..+++|+.|++++|.+...........+|+.|++++|.+.+..+.
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~  493 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINS-----RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR  493 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccCh-----hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence            4455555555555555555555443221     23456677777777776653322233456788888888888877788


Q ss_pred             cCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccc
Q psy4257         214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQ  292 (419)
Q Consensus       214 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  292 (419)
                      .|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++ +|..|..+++|+.|+|++|++.+..+..       
T Consensus       494 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-------  566 (968)
T PLN00113        494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN-------  566 (968)
T ss_pred             hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh-------
Confidence            88888888889999988887777778888889999999998886 5677888889999999999888543332       


Q ss_pred             eecCCcceeEEecCCccccccc
Q psy4257         293 IFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       293 ~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      +..+.+|+.+++++|++.+...
T Consensus       567 l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             HhcCcccCEEeccCCcceeeCC
Confidence            2247788899999998876543

>KOG4237|consensus

Probab=99.97  E-value=7.4e-33  Score=246.47  Aligned_cols=321  Identities=21%  Similarity=0.297  Sum_probs=224.3

Q ss_pred             EecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEEecCC-CCC
Q psy4257           8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF-NQI   84 (419)
Q Consensus         8 L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~-n~l   84 (419)
                      .+.++-.++++|..+.  +.-..|+|..|+|+.||+ .|+.+++|+.|||++|.|+.| |.+|.++.+|..|.+-+ |+|
T Consensus        51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            3445555666665553  356777788888888865 578888888888888888877 57788887777665555 778


Q ss_pred             cccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc-----
Q psy4257          85 TMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-----  158 (419)
Q Consensus        85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  158 (419)
                      +.+..+.|.++..|+.|.+.-|++..++ ..|..+++|..|.+.+|.+..+....|..+..++.+.+..|.+...     
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence            8888888888888888888888877664 5677778888888888887776666777777888887777763211     


Q ss_pred             -cCCCC-CCCcccCcccccEEEcCCCCCcCch-hhh-cCCCCCc-EEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257         159 -GTRNE-GKNQVQGVTNIFELKLQHNEIENLD-GAL-MGIHGLS-RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       159 -~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                       ..... ....++......-..+.+.++..++ +.| ..+..+. .+....+.....+...|..+++|++|+|++|+|+.
T Consensus       209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence             00000 0001122222222223333333332 112 1111221 12222223333444568899999999999999999


Q ss_pred             cCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257         234 LEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD  312 (419)
Q Consensus       234 ~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  312 (419)
                      |...+|.+...+++|+|..|+|..+. ..|.++..|+.|+|.+|+|+.+.+..+.       .+.++.+|.+-+|||.|+
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-------~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-------TLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-------ccceeeeeehccCcccCc
Confidence            99999999999999999999999887 5688999999999999999988876543       477889999999999999


Q ss_pred             cchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         313 DSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       313 ~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      |.+.|+.+|+++..    +.+.+.|+.+.
T Consensus       362 C~l~wl~~Wlr~~~----~~~~~~Cq~p~  386 (498)
T KOG4237|consen  362 CRLAWLGEWLRKKS----VVGNPRCQSPG  386 (498)
T ss_pred             cchHHHHHHHhhCC----CCCCCCCCCCc
Confidence            99999999999833    66777887543

>KOG0444|consensus

Probab=99.96  E-value=2.9e-32  Score=255.41  Aligned_cols=276  Identities=25%  Similarity=0.367  Sum_probs=173.0

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEec
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM   79 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l   79 (419)
                      +.+|++|.+++|++.++.+.+..++.|+.+++..|++.  .||..+.++..|..|||+.|++...|..+...+++-.|+|
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence            34566666666666666666666666666666666655  4566666666666666666666666666666666666666


Q ss_pred             CCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257          80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG  159 (419)
Q Consensus        80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (419)
                      ++|+|..|+...|.++..|-.|+|++|++..+|..+..+..|+.|.|++|.+...-...+..+++|+.|.+++.+=+-. 
T Consensus       134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~-  212 (1255)
T KOG0444|consen  134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD-  212 (1255)
T ss_pred             ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh-
Confidence            6666666666666666666666666666666666666666666666666665544444444555555555555432111 


Q ss_pred             CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257         160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  239 (419)
                         -.+..+..+.+|..++++.|.+..+|..+..+.+|+.|+|++|+|+.+.. ......+|+.|+||.|+++.++. ++
T Consensus       213 ---N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-av  287 (1255)
T KOG0444|consen  213 ---NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-AV  287 (1255)
T ss_pred             ---cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-HH
Confidence               02224566778888888888888888888888888888888888877633 23445677777777777776654 34


Q ss_pred             cCCCCCceEeCcCCcc--cccCccCCCCCCcCEEecCCCcccccch
Q psy4257         240 TFLPALEELFVSHNSL--TRLDKDFHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       240 ~~l~~L~~L~L~~N~i--~~l~~~~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                      ..++.|+.|++.+|++  .+||.+++.+.+|+.+..++|++.-+|.
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE  333 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE  333 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence            4456666666666644  2355555555555555555555444443

>KOG0472|consensus

Probab=99.96  E-value=6.4e-32  Score=240.95  Aligned_cols=199  Identities=26%  Similarity=0.445  Sum_probs=148.2

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      .+..|++++|++..+|..+..+.+|+.|++++|.+.+++++++.+..|..++..+|.+.++|+.+..+.+|..|++.+|+
T Consensus        92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~  171 (565)
T KOG0472|consen   92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK  171 (565)
T ss_pred             HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc
Confidence            45567777777777777777788888888888888888888888888888888888888888778888888888888888


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE  163 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  163 (419)
                      +..++++.+. ++.|++|+...|.++.+|..++.+.+|..||+..|.+...+  .|.++..|.+|+++.|.|.-++..  
T Consensus       172 l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae--  246 (565)
T KOG0472|consen  172 LKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAE--  246 (565)
T ss_pred             hhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHH--
Confidence            8888777666 77888888888888888888888888888888888776643  666666666666666666655433  


Q ss_pred             CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCc
Q psy4257         164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI  210 (419)
Q Consensus       164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~  210 (419)
                         ....+.++..||+.+|+++++|..+.-+.+|++||+++|.|+++
T Consensus       247 ---~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  247 ---HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             ---HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence               45566666666666666666666666666666666666666654

>KOG0444|consensus

Probab=99.96  E-value=1e-30  Score=245.06  Aligned_cols=292  Identities=26%  Similarity=0.355  Sum_probs=218.3

Q ss_pred             CCCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~   78 (419)
                      ++.|+.+++..|++.  .+|..++.+..|..|||++|++.++|..+.+.+++-.|+|++|.|..|| ..|.++..|-+||
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            567888888888876  5778888888999999999999999888888888999999999999888 5677888888899


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccccc-ccChhhhcCCCCccEEEcCCCCCc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLT-EFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      |++|++..++| .+..+..|+.|.|++|.+..+- ..+..+.+|+.|.+++.+-+ ...|..+.++.+|+.+|++.|.+.
T Consensus       157 LS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  157 LSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             cccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            99999888876 4677888888888888776431 33445566777777765432 235556777777777788877776


Q ss_pred             cccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc--cc
Q psy4257         157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT--TL  234 (419)
Q Consensus       157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~  234 (419)
                      .++.      .+-.+.+|+.|+|++|.|+.+........+|+.|+|++|+++.+ |.++..+++|+.|.+.+|+++  +|
T Consensus       236 ~vPe------cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  236 IVPE------CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             cchH------HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCC
Confidence            6543      45567777777888887777765555566777778888877766 677777777777777777654  55


Q ss_pred             CchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257         235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL  310 (419)
Q Consensus       235 ~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~  310 (419)
                      +.+ ++.+.+|+.+..++|.+.-+|+++..|..|+.|.|+.|++-.+|..+-.        ++.+..|++..||-.
T Consensus       309 PSG-IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl--------L~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  309 PSG-IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL--------LPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccc-hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhh--------cCCcceeeccCCcCc
Confidence            543 5667777777777777777777777777788888888877777765432        667777777777743

>KOG0472|consensus

Probab=99.96  E-value=2.7e-31  Score=236.96  Aligned_cols=295  Identities=25%  Similarity=0.360  Sum_probs=222.1

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      +|..|++.+|++..++...-+++.|++||+.+|.++.+|..++.+.+|..|++..|+|..+| .|.+|..|++|+++.|+
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ  239 (565)
T ss_pred             HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH
Confidence            34456666666666655444467777777777777777777777777777788888887777 47777888888888888


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC--
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR--  161 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--  161 (419)
                      |..++......+.+|.+|+|.+|+++++|..+.-+.+|.+||+++|.|++. +..++++ +|+.|-+.||.+..+...  
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHH
Confidence            888877777788888889999999888888888888888999999888874 5678888 788888888877521000  


Q ss_pred             ----------------------------CCC---CCcc---------------------------c--CcccccEEEcCC
Q psy4257         162 ----------------------------NEG---KNQV---------------------------Q--GVTNIFELKLQH  181 (419)
Q Consensus       162 ----------------------------~~~---~~~~---------------------------~--~~~~L~~L~l~~  181 (419)
                                                  ..+   ...+                           .  .-.-++.+++++
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence                                        000   0000                           0  001134556666


Q ss_pred             CCCcCc------------------------hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257         182 NEIENL------------------------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  237 (419)
Q Consensus       182 n~l~~~------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  237 (419)
                      |++.++                        |..++.+++|..|+|++|-+..+ |..++.+..|+.||++.|+|..++..
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~  476 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPEC  476 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHH
Confidence            665443                        33456788999999999999988 67788888999999999999888653


Q ss_pred             hccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       238 ~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                       ...+..++.+-.++|++..++.. +.++.+|..|||.+|.|..+|+..        ..+.+++++.+.||||.-
T Consensus       477 -~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L--------gnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  477 -LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL--------GNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             -HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhh--------ccccceeEEEecCCccCC
Confidence             33455677777788999999854 999999999999999999999864        358899999999999973

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.93  E-value=5.7e-25  Score=220.69  Aligned_cols=258  Identities=28%  Similarity=0.260  Sum_probs=210.9

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      +-..|+|+++.++.+|..+.  ++|+.|++.+|+|+.+|..   .++|++|++++|+|+.+|..   .++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            45689999999999988775  4899999999999999853   57899999999999999853   4689999999999


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE  163 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  163 (419)
                      +..++. .   ..+|+.|++++|+++.+|..   .++|+.|++++|.+.++.. .   ..+|+.|++++|.+..++..  
T Consensus       274 L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~LP~l--  340 (788)
T PRK15387        274 LTHLPA-L---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTSLPTL--  340 (788)
T ss_pred             hhhhhh-c---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC-C---cccccccccccCcccccccc--
Confidence            987753 2   35789999999999998753   4789999999999987532 2   34688899999999876531  


Q ss_pred             CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257         164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP  243 (419)
Q Consensus       164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  243 (419)
                             ..+|+.|+|++|+|..+|..   ..+|+.|++++|.|..+ |..   ..+|+.|+|++|+|..++..    .+
T Consensus       341 -------p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~l----~s  402 (788)
T PRK15387        341 -------PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLPVL----PS  402 (788)
T ss_pred             -------ccccceEecCCCccCCCCCC---CcccceehhhccccccC-ccc---ccccceEEecCCcccCCCCc----cc
Confidence                   25799999999999998853   35788899999999887 332   35799999999999987643    46


Q ss_pred             CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      +|+.|++++|+|+.+|..   ..+|+.|++++|+|+.+|..+.        .+..+..|+|++|++.+
T Consensus       403 ~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~--------~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        403 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLI--------HLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHh--------hccCCCeEECCCCCCCc
Confidence            899999999999999853   3468889999999999887543        37888999999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.92  E-value=1.9e-24  Score=216.95  Aligned_cols=244  Identities=27%  Similarity=0.286  Sum_probs=203.4

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n   82 (419)
                      ++|+.|++.+|+|+.+|..   .++|+.|+|++|+|+.+|..   .++|+.|++++|.+..+|..+   .+|+.|++++|
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N  292 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN  292 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC
Confidence            3689999999999988752   57999999999999999854   468999999999999988643   57889999999


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      ++..++.    ..++|+.|++++|+|..+|...   .+|+.|++++|.+.+++ . +  ..+|+.|+|++|+|..++.. 
T Consensus       293 ~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP-~-l--p~~Lq~LdLS~N~Ls~LP~l-  360 (788)
T PRK15387        293 QLTSLPV----LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLP-T-L--PSGLQELSVSDNQLASLPTL-  360 (788)
T ss_pred             ccccccc----cccccceeECCCCccccCCCCc---ccccccccccCcccccc-c-c--ccccceEecCCCccCCCCCC-
Confidence            9998854    3478999999999999987532   46889999999998753 2 1  25799999999999987532 


Q ss_pred             CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257         163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL  242 (419)
Q Consensus       163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  242 (419)
                              ..+|+.|++++|.+..+|..   ..+|+.|++++|.|++++. .   ..+|+.|++++|+|..++..    +
T Consensus       361 --------p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssIP~l----~  421 (788)
T PRK15387        361 --------PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSLPML----P  421 (788)
T ss_pred             --------CcccceehhhccccccCccc---ccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCCCCcc----h
Confidence                    35788899999999988853   3579999999999998743 2   36899999999999988742    4


Q ss_pred             CCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhh
Q psy4257         243 PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA  286 (419)
Q Consensus       243 ~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (419)
                      .+|+.|++++|+|+.+|..+..+++|+.|+|++|+|++.....+
T Consensus       422 ~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        422 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            57899999999999999999999999999999999997655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.90  E-value=2.5e-23  Score=210.05  Aligned_cols=251  Identities=26%  Similarity=0.352  Sum_probs=144.8

Q ss_pred             ccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      +...|++++++++.+|..+.  .+|+.|+|++|.|+.+|..+.  .+|+.|++++|++..++.. +.  .+|+.|+|++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChh-hh--ccccEEECcCC
Confidence            34556666666665554432  355666666666666554332  3566666666666555332 21  24666666666


Q ss_pred             cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      ++..+|..+.  .+|+.|++++|.+..+ +..+.  .+|+.|++++|++..++..      +  ..+|+.|++++|.+..
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~LP~~------l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRTLPAH------L--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCccccCccc------c--hhhHHHHHhcCCcccc
Confidence            6666654443  3566666666666543 22222  3566666666666654321      1  1356666677776666


Q ss_pred             chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCC
Q psy4257         187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP  266 (419)
Q Consensus       187 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~  266 (419)
                      +|..+  .++|+.|++++|.++.+ |..+.  ++|+.|+|++|+|..++...   .++|+.|+|++|+|..+|..+.  .
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~  388 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTNLPENLP--A  388 (754)
T ss_pred             CCccc--cccceeccccCCccccC-Chhhc--CcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCCCCHhHH--H
Confidence            65433  24677777777777665 33332  56777777777777665432   3567777777777777765443  2


Q ss_pred             CcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      .|+.|++++|+|..++..+...    ....+.+..+++.+||+..
T Consensus       389 sL~~LdLs~N~L~~LP~sl~~~----~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        389 ALQIMQASRNNLVRLPESLPHF----RGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHhhccCCcccCchhHHHH----hhcCCCccEEEeeCCCccH
Confidence            5777777777777766543221    1124566777778887753

>KOG0618|consensus

Probab=99.89  E-value=3.1e-25  Score=216.94  Aligned_cols=286  Identities=27%  Similarity=0.330  Sum_probs=179.9

Q ss_pred             EecccccccccccccccccccceeecccccCccCccc-------------------cccccccceeecccccccCchhhh
Q psy4257           8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-------------------IQLFSQLGSLYANNNRITSLDGLL   68 (419)
Q Consensus         8 L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~-------------------~~~~~~L~~L~l~~n~i~~l~~~~   68 (419)
                      |+|.+|.+..+  .+..+.+|+.|..+.|++..+-..                   -..-.+|++++++.|.+..+|..+
T Consensus       183 ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi  260 (1081)
T KOG0618|consen  183 LDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI  260 (1081)
T ss_pred             eecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHH
Confidence            77777777622  344466666666666665543110                   011234444444444444444444


Q ss_pred             cCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCC-ccE
Q psy4257          69 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR-LRT  147 (419)
Q Consensus        69 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~  147 (419)
                      ..+.+|+.|...+|.+..++ ..+....+|+.|.+..|.+..+|.....+..|+.|+|..|.+...+...|..+.. |+.
T Consensus       261 ~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT  339 (1081)
T ss_pred             HhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence            44444555554444443332 2233344444444444544444444444445555555555544443333332222 444


Q ss_pred             EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257         148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI  226 (419)
Q Consensus       148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  226 (419)
                      |+.+.|++...+..     .-..++.|+.|.+.+|.+++- -..+.+...|+.|+|++|++..++...+.++..|++|+|
T Consensus       340 ln~s~n~l~~lp~~-----~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSY-----EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             Hhhhhccccccccc-----cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            44444444433311     123456788889999988742 245677889999999999999998888889999999999


Q ss_pred             cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257         227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG  306 (419)
Q Consensus       227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~  306 (419)
                      |+|+++.++ .....+..|+.|...+|+|..+| .+..++.|+.+|++.|+|+.+......       ..+.|+++++.|
T Consensus       415 SGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-------p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  415 SGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-------PSPNLKYLDLSG  485 (1081)
T ss_pred             ccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC-------CCcccceeeccC
Confidence            999999988 45667889999999999999999 788999999999999999866544322       247899999999


Q ss_pred             Cccc
Q psy4257         307 NPVL  310 (419)
Q Consensus       307 Np~~  310 (419)
                      |+|.
T Consensus       486 N~~l  489 (1081)
T KOG0618|consen  486 NTRL  489 (1081)
T ss_pred             Cccc
Confidence            9973

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.89  E-value=8.5e-23  Score=206.26  Aligned_cols=248  Identities=24%  Similarity=0.384  Sum_probs=205.5

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n   82 (419)
                      .+...|+++++.++.+|..+.  ++|+.|+|++|+|+.+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            356789999999999987664  589999999999999987654  589999999999999986554  57999999999


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      ++..++.. +.  .+|+.|++++|+|+.+|..+.  .+|+.|++++|.+..++ ..+.  .+|+.|++++|.+..++.. 
T Consensus       252 ~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~lp--~sL~~L~Ls~N~Lt~LP~~-  322 (754)
T PRK15370        252 RITELPER-LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP-AHLP--SGITHLNVQSNSLTALPET-  322 (754)
T ss_pred             ccCcCChh-Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCc-ccch--hhHHHHHhcCCccccCCcc-
Confidence            99987554 32  489999999999999987664  58999999999998754 3332  4789999999999876532 


Q ss_pred             CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257         163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL  242 (419)
Q Consensus       163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  242 (419)
                             ..++|+.|++++|.++.+|..+.  ++|+.|++++|+|..+ |..+.  ++|+.|+|++|++..++....   
T Consensus       323 -------l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~L-P~~lp--~~L~~LdLs~N~Lt~LP~~l~---  387 (754)
T PRK15370        323 -------LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVL-PETLP--PTITTLDVSRNALTNLPENLP---  387 (754)
T ss_pred             -------ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcC-Chhhc--CCcCEEECCCCcCCCCCHhHH---
Confidence                   13689999999999999987654  6899999999999876 44443  689999999999999876542   


Q ss_pred             CCCceEeCcCCcccccCccC----CCCCCcCEEecCCCcccc
Q psy4257         243 PALEELFVSHNSLTRLDKDF----HGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       243 ~~L~~L~L~~N~i~~l~~~~----~~l~~L~~L~L~~N~l~~  280 (419)
                      ..|+.|++++|+|..+|..+    ..++.+..|++.+|.|..
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            47999999999999988543    445889999999999874

>PLN03210 Resistant to P

Probab=99.88  E-value=1.6e-21  Score=209.59  Aligned_cols=284  Identities=17%  Similarity=0.235  Sum_probs=156.8

Q ss_pred             CcEEecccccccccccccccccccceeecccccCccCccccccccccceeeccccc-ccCchhhhcCCCCCCEEecCCCC
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR-ITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~-i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      |+.|.+.++.+..+|..+ ...+|+.|++.+|.+..++.++..+++|+.|+|+++. +..+|. +..+++|+.|++++|.
T Consensus       591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS  668 (1153)
T ss_pred             cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence            344444444444444332 2345555555555555554444555555555555432 333442 4445555555555544


Q ss_pred             CcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      .....+..+.++.+|+.|++++| .+..+|..+ ++++|+.|++++|......+.   ...+|+.|++++|.+..++...
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~  744 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL  744 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc
Confidence            33333344555555555555553 344444333 445555555555543222221   1245566666666655443211


Q ss_pred             CCC------------------------CcccCcccccEEEcCCCC-CcCchhhhcCCCCCcEEEcCCCC-CCCcCcccCC
Q psy4257         163 EGK------------------------NQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNK-LRTISPDDFI  216 (419)
Q Consensus       163 ~~~------------------------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  216 (419)
                      ...                        ......++|+.|++++|. +..+|..+.++++|+.|++++|. +..+ |..+ 
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-  822 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-  822 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-
Confidence            000                        001123467777777763 55677777778888888887763 4444 4333 


Q ss_pred             CCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC-Ccccccchhhhhhccccee
Q psy4257         217 GLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH-NNIKAINIQLALKTQCQIF  294 (419)
Q Consensus       217 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~~  294 (419)
                      .+++|+.|++++|. +..++.    ...+|+.|+|++|.|..+|..+..+++|+.|+|++ |++..++...        .
T Consensus       823 ~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--------~  890 (1153)
T PLN03210        823 NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--------S  890 (1153)
T ss_pred             CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--------c
Confidence            56778888888764 333322    14578889999999998888888899999999988 5677776542        2


Q ss_pred             cCCcceeEEecCCc
Q psy4257         295 GLNSTLRIYLEGNP  308 (419)
Q Consensus       295 ~~~~l~~l~l~~Np  308 (419)
                      .+..|..+++.+|+
T Consensus       891 ~L~~L~~L~l~~C~  904 (1153)
T PLN03210        891 KLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCCCeeecCCCc
Confidence            35666666766654

syringae 6; Provisional

>KOG0618|consensus

Probab=99.88  E-value=1.4e-24  Score=212.38  Aligned_cols=265  Identities=27%  Similarity=0.416  Sum_probs=174.7

Q ss_pred             CcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCC
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI   84 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l   84 (419)
                      |++++++.|++..+|.++..+.+|+.|+..+|.++.+|..+....+|+.|.+..|.+..+|....+++.|+.|+|..|+|
T Consensus       243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cccChhhhcCCCC-CCEEEccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          85 TMVRRDEFQNLHN-LDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        85 ~~~~~~~~~~~~~-L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      ..++...|.-... |+.|..+.|.+...|.. =..++.|+.|++.+|.+++.....+.+..+|+.|+|++|++..++.. 
T Consensus       323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas-  401 (1081)
T KOG0618|consen  323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS-  401 (1081)
T ss_pred             cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH-
Confidence            4444433333322 44444444444444310 12345788999999999998888999999999999999999887654 


Q ss_pred             CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257         163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL  242 (419)
Q Consensus       163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  242 (419)
                          .++.+..|++|+|++|+++.+|..+..+..|++|...+|.+... | .+..++.|+.+|++.|+++.+.......-
T Consensus       402 ----~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  402 ----KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             ----HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence                78889999999999999999999999999999999999999877 5 77889999999999999987654433333


Q ss_pred             CCCceEeCcCCcccccC-ccCCCCCCcCEEecCCC
Q psy4257         243 PALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN  276 (419)
Q Consensus       243 ~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N  276 (419)
                      ++|++|||++|.-..++ +.|..+..+...++.-|
T Consensus       476 p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            89999999999754444 34566666666666655

>PLN03210 Resistant to P

Probab=99.87  E-value=7.3e-21  Score=204.49  Aligned_cols=283  Identities=24%  Similarity=0.259  Sum_probs=212.0

Q ss_pred             CCCCCcEEeccccccc-------ccccccccc-cccceeecccccCccCccccccccccceeecccccccCchhhhcCCC
Q psy4257           1 GLTDLNWLFLNNNRLK-------SLEGQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT   72 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~-------~l~~~~~~~-~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~   72 (419)
                      +|++|+.|.+..+...       .+++.+..+ .+|+.|++.++.+..+|..| ...+|+.|++.+|.+..++..+..++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~  634 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT  634 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence            5788999988766421       355556555 46999999999999999887 46899999999999999988888999


Q ss_pred             CCCEEecCCCC-CcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEc
Q psy4257          73 KLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL  150 (419)
Q Consensus        73 ~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  150 (419)
                      +|+.|+|+++. +..+ + .+..+++|+.|+|++| .+..+|..+..+++|+.|++++|......+..+ .+++|+.|++
T Consensus       635 ~Lk~L~Ls~~~~l~~i-p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEI-P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCEEECCCCCCcCcC-C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            99999999876 4444 3 4888999999999997 577889999999999999999975433344433 6899999999


Q ss_pred             CCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh------------------------------cCCCCCcEE
Q psy4257         151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL------------------------------MGIHGLSRL  200 (419)
Q Consensus       151 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------------------------------~~l~~L~~L  200 (419)
                      ++|......+        ....+|+.|++++|.+..+|..+                              ...++|+.|
T Consensus       712 sgc~~L~~~p--------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        712 SGCSRLKSFP--------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             CCCCCccccc--------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            9985322111        12357788888888877766432                              112467777


Q ss_pred             EcCCCCCCCcCcccCCCCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCC-cccccCccCCCCCCcCEEecCCCcc
Q psy4257         201 DLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHN-SLTRLDKDFHGLPVLCKADLAHNNI  278 (419)
Q Consensus       201 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~l~~~~~~l~~L~~L~L~~N~l  278 (419)
                      +|++|......|..+.++++|+.|+|++|. +..++...  .+++|+.|+|++| .+..+|..   ..+|+.|+|++|.|
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI  858 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence            888775544447778888888888888864 56665432  5788888888886 44445432   36788999999999


Q ss_pred             cccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         279 KAINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      +.+|..+        ..+++|..+++.+|+
T Consensus       859 ~~iP~si--------~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        859 EEVPWWI--------EKFSNLSFLDMNGCN  880 (1153)
T ss_pred             ccChHHH--------hcCCCCCEEECCCCC
Confidence            9888653        347888899988854

syringae 6; Provisional

>KOG4237|consensus

Probab=99.87  E-value=2.9e-24  Score=191.84  Aligned_cols=272  Identities=25%  Similarity=0.329  Sum_probs=221.7

Q ss_pred             CCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeeccc-ccccCch-hhhcCCCCCCEEec
Q psy4257           4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN-NRITSLD-GLLRGLTKLQVFNM   79 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~-n~i~~l~-~~~~~l~~L~~L~l   79 (419)
                      .-.+|+|..|.|+.+| +.|..+++|++|||++|+|+.| |+.|.++.+|.+|-+.+ |+|+.++ ..|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3468999999999998 6788899999999999999999 67899999998887766 9999998 78999999999999


Q ss_pred             CCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccccc------------ChhhhcCCCCcc
Q psy4257          80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF------------LLDDIRGLKRLR  146 (419)
Q Consensus        80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~  146 (419)
                      .-|++.-+..++|..+++|..|.+.+|.+..|+. .|..+..++.+.+..|.+...            .+-.+++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            9999999999999999999999999999999976 789999999999998884321            222344444444


Q ss_pred             EEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC-CCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEE
Q psy4257         147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN-EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML  224 (419)
Q Consensus       147 ~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  224 (419)
                      -..+.+.++..+....+...    +..+..=..+.+ .....| ..|..+++|+.|+|++|+|+.|...+|.++..+++|
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~----~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCS----LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             hHHHHHHHhcccchhhhhhh----HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            45555666655543311111    112211112223 233334 568899999999999999999999999999999999


Q ss_pred             EccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCccc
Q psy4257         225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       225 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~  279 (419)
                      .|..|+|..+....|.++..|+.|+|.+|+|+.+. ..|..+..|..|+|-.|.+.
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999999999999999999999999999975 66889999999999988764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.83  E-value=1.1e-21  Score=183.79  Aligned_cols=276  Identities=26%  Similarity=0.277  Sum_probs=162.6

Q ss_pred             EEeccccccc--ccccccccccccceeecccccCc-----cCccccccccccceeecccccccC-------chhhhcCCC
Q psy4257           7 WLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS-------LDGLLRGLT   72 (419)
Q Consensus         7 ~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-------l~~~~~~l~   72 (419)
                      .|+|..+.++  .....+..+.+|+.|+++++.++     .++..+...+.|++|+++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666654  22233444666777777777764     244445555667777777666552       223455566


Q ss_pred             CCCEEecCCCCCcccChhhhcCCCC---CCEEEccCCcCcc-----ccccccCC-ccCcEEeccccccccc----Chhhh
Q psy4257          73 KLQVFNMDFNQITMVRRDEFQNLHN---LDSISLQNNQITS-----MNSSLSGL-TKLAYLYLSHNQLTEF----LLDDI  139 (419)
Q Consensus        73 ~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~L~~n~l~~-----i~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~  139 (419)
                      +|+.|++++|.+....+..+..+.+   |++|++++|++..     +...+..+ ++|+.|++++|.+++.    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6777777776666544444444433   6666666666552     12233444 5566666666655521    12233


Q ss_pred             cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc----ccC
Q psy4257         140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP----DDF  215 (419)
Q Consensus       140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~  215 (419)
                      ..+.+|+.|++++|.+.+..                        +..++..+..+++|+.|++++|.+.+...    ..+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         162 RANRDLKELNLANNGIGDAG------------------------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             HhCCCcCEEECcCCCCchHH------------------------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            44445555555555443210                        00123344555678888888887764432    345


Q ss_pred             CCCCCCcEEEccCCcCcccCchhcc-----CCCCCceEeCcCCcccc-----cCccCCCCCCcCEEecCCCcccccchhh
Q psy4257         216 IGLDSLKMLDISHNLLTTLEETSKT-----FLPALEELFVSHNSLTR-----LDKDFHGLPVLCKADLAHNNIKAINIQL  285 (419)
Q Consensus       216 ~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~-----l~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (419)
                      ..+++|++|++++|.+.+.....+.     ....|+.|++++|.++.     +.+.+..+++|+++++++|.++.-+...
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence            5677888888888887753222221     24688999999998862     3345666689999999999998776555


Q ss_pred             hhhcccceecC-CcceeEEecCCcc
Q psy4257         286 ALKTQCQIFGL-NSTLRIYLEGNPV  309 (419)
Q Consensus       286 ~~~~~~~~~~~-~~l~~l~l~~Np~  309 (419)
                      ....   +... +.++.+++.+|||
T Consensus       298 ~~~~---~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         298 LAES---LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHH---HhhcCCchhhcccCCCCC
Confidence            4432   2224 6788899999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.81  E-value=9.3e-21  Score=177.40  Aligned_cols=252  Identities=21%  Similarity=0.215  Sum_probs=159.8

Q ss_pred             CCCCcEEeccccccc-----ccccccccccccceeecccccCcc-------CccccccccccceeecccccccC-chhhh
Q psy4257           2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEA-------LPSDIQLFSQLGSLYANNNRITS-LDGLL   68 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~-------i~~~~~~~~~L~~L~l~~n~i~~-l~~~~   68 (419)
                      +.+|++|+++++.++     .+...+...++|++|+++++.+..       ++..+..+.+|+.|++++|.+.. .+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            356899999999985     344456668889999999998763       23456778899999999999974 33444


Q ss_pred             cCC---CCCCEEecCCCCCcccC----hhhhcCC-CCCCEEEccCCcCc-----cccccccCCccCcEEecccccccccC
Q psy4257          69 RGL---TKLQVFNMDFNQITMVR----RDEFQNL-HNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEFL  135 (419)
Q Consensus        69 ~~l---~~L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~l~~n~l~~~~  135 (419)
                      ..+   ++|+.|++++|++....    ...+..+ ++|+.|++++|.++     .+...+..+.+|++|++++|.+.+..
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            444   44999999999987422    2345666 89999999999988     33456777889999999999988532


Q ss_pred             ----hhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC
Q psy4257         136 ----LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS  211 (419)
Q Consensus       136 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~  211 (419)
                          ...+..+++|+.|++++|.+......                        .+...+..+++|++|++++|.+++..
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~------------------------~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGAS------------------------ALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHH------------------------HHHHHhcccCCCCEEecCCCcCchHH
Confidence                23445567899999999887643211                        11223334445555555555554321


Q ss_pred             cccCC-----CCCCCcEEEccCCcCcccCc----hhccCCCCCceEeCcCCcccccC-----ccCCCC-CCcCEEecCCC
Q psy4257         212 PDDFI-----GLDSLKMLDISHNLLTTLEE----TSKTFLPALEELFVSHNSLTRLD-----KDFHGL-PVLCKADLAHN  276 (419)
Q Consensus       212 ~~~~~-----~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~l~-----~~~~~l-~~L~~L~L~~N  276 (419)
                      ...+.     ....|++|++++|.+++...    ..+..+++|+++++++|.+..-+     ..+... +.++.+++.+|
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            11111     12455555555555542111    12233455666666666555422     223333 45666666555


Q ss_pred             c
Q psy4257         277 N  277 (419)
Q Consensus       277 ~  277 (419)
                      .
T Consensus       318 ~  318 (319)
T cd00116         318 S  318 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.74  E-value=3.5e-20  Score=147.85  Aligned_cols=160  Identities=26%  Similarity=0.437  Sum_probs=106.5

Q ss_pred             cccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEE
Q psy4257          22 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI  101 (419)
Q Consensus        22 ~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  101 (419)
                      ++.+.++..|.|++|+++.+|..+..+.+|+.|++.+|+|..+|..++.+++|+.|+++-|++..+ |..|+.++.|++|
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl  107 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL  107 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence            455666777777777777777777777777777777777777776677777777777776666544 4456666677777


Q ss_pred             EccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEc
Q psy4257         102 SLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL  179 (419)
Q Consensus       102 ~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l  179 (419)
                      +|.+|++.  .+|..|..+..|+.|++++|.+.- .|.+++.+++|+.|.+..|.+                        
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndl------------------------  162 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDL------------------------  162 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCch------------------------
Confidence            77666665  456666666666666666666643 344556666665555555554                        


Q ss_pred             CCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc
Q psy4257         180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISP  212 (419)
Q Consensus       180 ~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  212 (419)
                           -++|..+..+..|++|.+.+|+++.++|
T Consensus       163 -----l~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  163 -----LSLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             -----hhCcHHHHHHHHHHHHhcccceeeecCh
Confidence                 4456667777777777787777777644

>KOG0617|consensus

Probab=99.72  E-value=5.5e-20  Score=146.71  Aligned_cols=159  Identities=25%  Similarity=0.423  Sum_probs=145.6

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +.++..|.|++|+++.++..+..+.+|+.|++++|+|+++|..++.+++|+.|+++-|++..+|..|+.++.|+.||+.+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            45678899999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc-cChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257          82 NQITM-VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT  160 (419)
Q Consensus        82 n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (419)
                      |++.. ..|..|..+..|+.|+|++|.+.-+|..++.+.+|+.|.+++|.+-. .|..++.+..|+.|.+.+|++..+++
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecCh
Confidence            99865 34566778999999999999999999999999999999999999887 56789999999999999999987765


Q ss_pred             C
Q psy4257         161 R  161 (419)
Q Consensus       161 ~  161 (419)
                      .
T Consensus       191 e  191 (264)
T KOG0617|consen  191 E  191 (264)
T ss_pred             h
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.53  E-value=1.5e-14  Score=139.35  Aligned_cols=199  Identities=30%  Similarity=0.411  Sum_probs=141.3

Q ss_pred             eeecccccCccCccccccccccceeecccccccCchhhhcCCC-CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257          30 LLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI  108 (419)
Q Consensus        30 ~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  108 (419)
                      .+++..+.+..-...+..++.++.|++.+|.+..++.....+. +|+.|++++|++..+. ..+..+++|+.|++++|++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchh
Confidence            4677777764333344555677888888888887776666663 7888888888877763 3466777888888888888


Q ss_pred             ccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch
Q psy4257         109 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD  188 (419)
Q Consensus       109 ~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  188 (419)
                      ..++......++|+.|++++|.+..+. ........|++|.+++|.+....      ..+..+.++..+.+.+|++..++
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~~~~  248 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLEDLP  248 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceeeecc
Confidence            877666557778888888888877653 33344555788888888533322      13566677777778888877766


Q ss_pred             hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257         189 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS  238 (419)
Q Consensus       189 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  238 (419)
                      ..+..+..++.|++++|.++.+..  ++.+.+++.|++++|.+..+....
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            677778888888888888888755  778888888888888887665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.50  E-value=4.7e-14  Score=135.94  Aligned_cols=196  Identities=35%  Similarity=0.425  Sum_probs=154.7

Q ss_pred             eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCC-CCCEEEccCCcCccccccccCCccCcEEecccccc
Q psy4257          53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH-NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL  131 (419)
Q Consensus        53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l  131 (419)
                      .+++..+.+..-...+..+..++.|++.+|.+..+.+. ...+. +|+.|++++|++..++..+..+++|+.|++++|++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            57888888754333455568899999999999888653 34443 89999999999998887888899999999999998


Q ss_pred             cccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC
Q psy4257         132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS  211 (419)
Q Consensus       132 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~  211 (419)
                      ..+.+ .....+.|+.|++++|++..++..      ......|.+|.+++|.+..++..+..+.++..+.+.+|++..+ 
T Consensus       176 ~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~------~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-  247 (394)
T COG4886         176 SDLPK-LLSNLSNLNNLDLSGNKISDLPPE------IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-  247 (394)
T ss_pred             hhhhh-hhhhhhhhhheeccCCccccCchh------hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-
Confidence            87543 333678899999999999887642      2345568899999997666667778888888888888888765 


Q ss_pred             cccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257         212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       212 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      +..+..+.+++.|++++|.++.+..  +..+.+++.|++++|.+..++
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            5667788889999999999998876  677889999999999887654

>KOG0532|consensus

Probab=99.50  E-value=1.4e-15  Score=142.56  Aligned_cols=213  Identities=22%  Similarity=0.325  Sum_probs=174.0

Q ss_pred             EEeccccccccccccc--ccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCC
Q psy4257           7 WLFLNNNRLKSLEGQL--GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI   84 (419)
Q Consensus         7 ~L~l~~n~l~~l~~~~--~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l   84 (419)
                      +|.|++-++..+|..-  ..+..-...||+.|++.++|..+..+..|+.+.|+.|.|..||..+..+..|.+|+|+.|++
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence            4667777777776322  23566678999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC
Q psy4257          85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG  164 (419)
Q Consensus        85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  164 (419)
                      ..++.. +..+ -|+.|.+++|+++.+|..++....|..|+.+.|.+..+ +..++++.+|+.|.+..|++..++..   
T Consensus       134 S~lp~~-lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~E---  207 (722)
T KOG0532|consen  134 SHLPDG-LCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEE---  207 (722)
T ss_pred             hcCChh-hhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHH---
Confidence            988654 4444 59999999999999999999999999999999999884 56788899999999999999887643   


Q ss_pred             CCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCC---CCCCcEEEccCCc
Q psy4257         165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG---LDSLKMLDISHNL  230 (419)
Q Consensus       165 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~  230 (419)
                         +. .-.|..||++.|++..||..|..+..|++|-|.+|.+..- |..+..   ..=.++|+..-++
T Consensus       208 ---l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  208 ---LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ---Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence               11 2347889999999999999999999999999999998764 333322   2234566666663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.47  E-value=4.8e-14  Score=117.42  Aligned_cols=139  Identities=32%  Similarity=0.438  Sum_probs=48.9

Q ss_pred             cccccccccccccccccccceeecccccCccCccccc-cccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccC
Q psy4257          10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR   88 (419)
Q Consensus        10 l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~-~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~   88 (419)
                      +..+.|...+. +.+..+++.|+|.+|.|+.| +.++ .+.+|+.|++++|.|..++. +..++.|+.|++++|+|+.+.
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-C
T ss_pred             ccccccccccc-cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccc
Confidence            34444544433 34455778888888888877 3454 46788888888888888764 677888888888888888876


Q ss_pred             hhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccC---hhhhcCCCCccEEEcC
Q psy4257          89 RDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLS  151 (419)
Q Consensus        89 ~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~  151 (419)
                      ......+++|++|++++|+|..+.  ..+..+++|+.|++.+|.+....   ...+..+++|+.||-.
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            533346788888888888887663  35667788888888888877542   1245667777777654

>KOG1909|consensus

Probab=99.46  E-value=1e-14  Score=129.44  Aligned_cols=165  Identities=22%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             hhcCCCCCCEEecCCCCCcccChh----hhcCCCCCCEEEccCCcCcccc--------------ccccCCccCcEEeccc
Q psy4257          67 LLRGLTKLQVFNMDFNQITMVRRD----EFQNLHNLDSISLQNNQITSMN--------------SSLSGLTKLAYLYLSH  128 (419)
Q Consensus        67 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~~i~--------------~~l~~l~~L~~L~l~~  128 (419)
                      ++.++++|+.|+||.|.+..-.+.    -+..+..|++|+|.+|.+....              .....-++|+.+....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            344555666666666655433222    2334556666666666554221              1223345677777777


Q ss_pred             ccccccC----hhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC-----chhhhcCCCCCcE
Q psy4257         129 NQLTEFL----LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSR  199 (419)
Q Consensus       129 n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~  199 (419)
                      |++....    ...|...+.|+.+.+..|.|..-.. ......+..+++|+.|+|.+|.++.     +...++.++.|+.
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            7766543    2345556677777777776653221 1112223344444444444444431     2233344445555


Q ss_pred             EEcCCCCCCCcCcccC-----CCCCCCcEEEccCCcCc
Q psy4257         200 LDLSHNKLRTISPDDF-----IGLDSLKMLDISHNLLT  232 (419)
Q Consensus       200 L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~  232 (419)
                      |++++|.+..-...+|     ...++|++|.|.+|.|+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            5555554433222221     12344555555555444

>KOG0532|consensus

Probab=99.44  E-value=6.1e-15  Score=138.38  Aligned_cols=193  Identities=24%  Similarity=0.338  Sum_probs=167.3

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n   82 (419)
                      ..-...|++.|++..+|..+..+..|+.+.|..|.|..||..+..+..|..|+|+.|+++.+|..+..++ |+.|.+++|
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence            3345678999999999988888999999999999999999999999999999999999999997666664 999999999


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      +++.++. .++....|..|+.+.|++.++|..+..+.+|+.|.++.|.+..++ ..+..++ |..||++.|++..++.  
T Consensus       154 kl~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-~El~~Lp-Li~lDfScNkis~iPv--  228 (722)
T KOG0532|consen  154 KLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-EELCSLP-LIRLDFSCNKISYLPV--  228 (722)
T ss_pred             ccccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-HHHhCCc-eeeeecccCceeecch--
Confidence            9998865 577889999999999999999999999999999999999998865 4556666 8999999999998875  


Q ss_pred             CCCCcccCcccccEEEcCCCCCcCchhhhcC---CCCCcEEEcCCC
Q psy4257         163 EGKNQVQGVTNIFELKLQHNEIENLDGALMG---IHGLSRLDLSHN  205 (419)
Q Consensus       163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---l~~L~~L~Ls~n  205 (419)
                          .|..|+.|++|.|.+|.+.+-|..+.-   ..-.++|+..-+
T Consensus       229 ----~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  229 ----DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ----hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence                589999999999999999988765532   223566776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.43  E-value=9.3e-14  Score=115.69  Aligned_cols=104  Identities=32%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      +++|+|.+|.|..+...-..+.+|+.|+|++|.|+.+.  .+..++.|++|++++|+|+++.......+++|++|+|++|
T Consensus        21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             ---------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred             cccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence            34444444444443321113444555555555555442  2444555555555555555543322223445555555555


Q ss_pred             cccccC--ccCCCCCCcCEEecCCCccc
Q psy4257         254 SLTRLD--KDFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       254 ~i~~l~--~~~~~l~~L~~L~L~~N~l~  279 (419)
                      +|..+.  ..+..+++|+.|+|.+|.+.
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCccc
Confidence            554443  12334444444444444444

>KOG3207|consensus

Probab=99.43  E-value=3.1e-14  Score=129.74  Aligned_cols=207  Identities=22%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             CCCCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCcccc---ccccCCccCcEEecccccccccChh-hhcCCCC
Q psy4257          70 GLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAYLYLSHNQLTEFLLD-DIRGLKR  144 (419)
Q Consensus        70 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~---~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  144 (419)
                      .+.+|+.+.|.++.+..... .....|++++.|+|++|-+..+.   .....+++|+.|+|+.|.+...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34555556665555444332 23344556666666666554331   2334555666666666655432111 1123455


Q ss_pred             ccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-CcCchhhhcCCCCCcEEEcCCCCCCCcC-cccCCCCCCCc
Q psy4257         145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLK  222 (419)
Q Consensus       145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  222 (419)
                      |+.|.|+.|.++....    ......+++|..|+|..|. +..-.....-+..|+.|+|++|.+...+ ....+.++.|+
T Consensus       199 lK~L~l~~CGls~k~V----~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDV----QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCHHHH----HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            5556666655543221    1123345555556665553 1111122233445555666655554332 12234455555


Q ss_pred             EEEccCCcCcccCchh------ccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccc
Q psy4257         223 MLDISHNLLTTLEETS------KTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       223 ~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~  280 (419)
                      .|+++.+.+.++....      ...+++|+.|+++.|+|..++  ..+..+.+|++|.+..|.+..
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            5555555555542211      123455666666666655544  234445555555555555544

>KOG0531|consensus

Probab=99.42  E-value=1.9e-14  Score=139.05  Aligned_cols=246  Identities=26%  Similarity=0.330  Sum_probs=115.5

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +..++.+.+..|.+..+-..+..+.+|..|++.+|.|..+...+..+.+|++|++++|.|..+.  .+..+..|+.|++.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            4445555555555554323345555555555555555555544455555555555555555553  24444455555555


Q ss_pred             CCcCccccccccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      +|.|..+ ..+..+..|+.+++++|++..+.. . ...+.+++.+++.+|.+..+.                        
T Consensus       149 ~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~------------------------  202 (414)
T KOG0531|consen  149 GNLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE------------------------  202 (414)
T ss_pred             cCcchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc------------------------
Confidence            5555555 334445555555555555554332 1 244445555555555544332                        


Q ss_pred             CcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCC--CCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc
Q psy4257         184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD  261 (419)
Q Consensus       184 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~  261 (419)
                            .+..+..+..+++..|.+..+.+  +..+.  .|+.+++++|.+..+. ..+..+..+..|++.+|++..+. .
T Consensus       203 ------~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~-~  272 (414)
T KOG0531|consen  203 ------GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE-G  272 (414)
T ss_pred             ------chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc-c
Confidence                  12222333333455555444321  11112  2555555555555442 12333455555566555555443 2


Q ss_pred             CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         262 FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      +.....+..+....|.+..........   .....+.+..+++.+||..-
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLALSEAISQEY---ITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccchHHHhccCcchhcchhhhhccc---cccccccccccccccCcccc
Confidence            333444445555555544221111100   01224455556666666543

>KOG1259|consensus

Probab=99.40  E-value=3.8e-14  Score=123.35  Aligned_cols=223  Identities=23%  Similarity=0.231  Sum_probs=119.3

Q ss_pred             ccccceeeccccc-------Cc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCC
Q psy4257          25 LSKLQLLVIEQNQ-------LE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL   95 (419)
Q Consensus        25 ~~~L~~L~L~~n~-------l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~   95 (419)
                      +.+|+.|..++..       |.  .+|..+.-+++|..+.++.+.-..|-+....-+.|+.+.+.+..+...+.  +-..
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe  258 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPE  258 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccch
Confidence            5666666666531       11  23444555666777766666544443322333566666666554443211  1111


Q ss_pred             CCCCEEEccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCccc
Q psy4257          96 HNLDSISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN  173 (419)
Q Consensus        96 ~~L~~L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  173 (419)
                      ..+.......-...  .+-..+..+..|+.|||++|.|+.+ .....-++.++.|++++|.|..++       .++.+.+
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~-------nLa~L~~  330 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ-------NLAELPQ  330 (490)
T ss_pred             hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh-------hhhhccc
Confidence            11111111110000  0001223334455555555555442 233344455555555555555443       2444555


Q ss_pred             ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc-hhccCCCCCceEeCcC
Q psy4257         174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE-TSKTFLPALEELFVSH  252 (419)
Q Consensus       174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  252 (419)
                      |+.|+|++|.++.+.++-..+.+++.|.|++|.|..+  ..+..+-+|..||+++|+|..+.. ..++.+|-|+.+.|.+
T Consensus       331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             ceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            6666666666666666556677777777777777654  235566677788888887776543 3466788888888888


Q ss_pred             CcccccC
Q psy4257         253 NSLTRLD  259 (419)
Q Consensus       253 N~i~~l~  259 (419)
                      |.+..++
T Consensus       409 NPl~~~v  415 (490)
T KOG1259|consen  409 NPLAGSV  415 (490)
T ss_pred             CCccccc
Confidence            8887766

>KOG0531|consensus

Probab=99.39  E-value=3.1e-14  Score=137.56  Aligned_cols=196  Identities=30%  Similarity=0.382  Sum_probs=143.8

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +..++.+.+..|.|..+...+..+.+|+.|++.+|+|..+...+..+.+|++|++++|.|+.+.. +..+..|+.|++++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc
Confidence            34567778888888875556788999999999999999986558889999999999999999865 56677799999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT  160 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (419)
                      |.|..+.  .|..+..|+.+++++|++..+... ...+.+++.+++.+|.+....  .+..+..+..+++..|.+..+.+
T Consensus       150 N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  150 NLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             Ccchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC
Confidence            9999884  466789999999999999988543 588899999999999987653  34444555666888888876543


Q ss_pred             CCCCCCcccCcc--cccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257         161 RNEGKNQVQGVT--NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT  209 (419)
Q Consensus       161 ~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~  209 (419)
                      .       ..+.  +|+.+++++|++..++..+..+..+..|++.+|++..
T Consensus       226 l-------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  226 L-------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             c-------ccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence            2       1111  2555555555555443333334444444444444433

>KOG1259|consensus

Probab=99.39  E-value=8.6e-14  Score=121.14  Aligned_cols=133  Identities=28%  Similarity=0.309  Sum_probs=77.8

Q ss_pred             CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCC
Q psy4257         142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL  221 (419)
Q Consensus       142 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  221 (419)
                      ++.|+++||++|.|+.++.      .+.-.+.++.|++++|.+..+.. +..+++|+.|||++|.++.+ ..+-..+.++
T Consensus       283 Wq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI  354 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNI  354 (490)
T ss_pred             Hhhhhhccccccchhhhhh------hhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence            4456666666666655432      24445566666666666665543 55566666666666666555 3344455566


Q ss_pred             cEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccccchh
Q psy4257         222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKAINIQ  284 (419)
Q Consensus       222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~~~~~  284 (419)
                      +.|.|+.|.|.++.  .+..+-+|..||+++|+|..+.  .+++.+|.|+++.|.+|.|..++..
T Consensus       355 KtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  355 KTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eeeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            66666666665543  2333446666666666666655  3466666666666666666665543

>KOG1909|consensus

Probab=99.36  E-value=6.1e-14  Score=124.51  Aligned_cols=243  Identities=20%  Similarity=0.189  Sum_probs=128.5

Q ss_pred             cccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCccc----C-------hhhhcCCCCCCEEEccCCcCc-
Q psy4257          47 LFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMV----R-------RDEFQNLHNLDSISLQNNQIT-  109 (419)
Q Consensus        47 ~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~----~-------~~~~~~~~~L~~L~L~~n~l~-  109 (419)
                      .+..++.|+|++|.|..     +...+...++|+..+++.- ++|.    .       ..++.++++|++|+|++|-+. 
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            34445555555555542     3334444555555555432 1111    1       124456667777777777665 


Q ss_pred             -cc---cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         110 -SM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       110 -~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                       .+   ...+.++..|++|+|.+|.+.......++.  .|..|.  .+            .....-..|+.+.+.+|++.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~------------kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN------------KKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH------------hccCCCcceEEEEeeccccc
Confidence             12   234456667777777777765332222111  011000  00            01223345555555555554


Q ss_pred             Cc-----hhhhcCCCCCcEEEcCCCCCCCc----CcccCCCCCCCcEEEccCCcCcccC----chhccCCCCCceEeCcC
Q psy4257         186 NL-----DGALMGIHGLSRLDLSHNKLRTI----SPDDFIGLDSLKMLDISHNLLTTLE----ETSKTFLPALEELFVSH  252 (419)
Q Consensus       186 ~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~  252 (419)
                      +-     ...|...+.|+.+.+..|.|..-    ....|..+++|++|||.+|-++.-.    ...+..+++|++|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            32     23455566777777777766321    2344566777777777777766432    22344566777777777


Q ss_pred             CcccccC-----ccC-CCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257         253 NSLTRLD-----KDF-HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV  309 (419)
Q Consensus       253 N~i~~l~-----~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~  309 (419)
                      |.+..=.     ..+ ...++|+.|.+.+|.|+.-...+...   .+...+.|..|.|+||.+
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~---~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA---CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH---HHhcchhhHHhcCCcccc
Confidence            7765421     111 33677778888888776433333222   122366777788888877

>KOG3207|consensus

Probab=99.36  E-value=1.5e-13  Score=125.40  Aligned_cols=204  Identities=21%  Similarity=0.288  Sum_probs=115.5

Q ss_pred             ccccceeecccccCccCcc--ccccccccceeecccccccCc---hhhhcCCCCCCEEecCCCCCcccChhh-hcCCCCC
Q psy4257          25 LSKLQLLVIEQNQLEALPS--DIQLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNL   98 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~--~~~~~~~L~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L   98 (419)
                      +.+|+.+.|.++.+...+.  ....|++++.|+|+.|-+...   -.....+++|+.|+++.|++....... -..+..|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            6667777777776665542  456677777777777766653   244556777777777777764332211 1245677


Q ss_pred             CEEEccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccE
Q psy4257          99 DSISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE  176 (419)
Q Consensus        99 ~~L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~  176 (419)
                      +.|.|+.|.++  .+...+..+|+|+.|+|..|...........-++.|+.|||++|++...+..    .....++.|+.
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~----~~~~~l~~L~~  275 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG----YKVGTLPGLNQ  275 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc----cccccccchhh
Confidence            77777777776  3334456667777777777753322223334456677777777776655421    13445556666


Q ss_pred             EEcCCCCCcCch--hh-----hcCCCCCcEEEcCCCCCCCcC-cccCCCCCCCcEEEccCCcCc
Q psy4257         177 LKLQHNEIENLD--GA-----LMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLT  232 (419)
Q Consensus       177 L~l~~n~l~~~~--~~-----~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  232 (419)
                      |+++.+.+.++.  ..     ...+++|++|+++.|+|.... ...+..+.+|+.|.+..|.+.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            666666655442  11     133455666666666554321 122233445555555555544

>KOG1859|consensus

Probab=99.22  E-value=1.8e-13  Score=131.93  Aligned_cols=190  Identities=24%  Similarity=0.311  Sum_probs=138.0

Q ss_pred             cccccCCccCcEEecccccccccChhhhcCC-CCccEEEcCCCCCccccC----CCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL-KRLRTVDLSYNKINKFGT----RNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       112 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~----~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      |-.+..+.+|+.|.++++.+...  ..+..+ ..|++| +..|.+..+..    .......--.+..|...+++.|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence            45667788999999999887652  222222 223333 23333322110    00000011124568888999999999


Q ss_pred             chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCC
Q psy4257         187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP  266 (419)
Q Consensus       187 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~  266 (419)
                      +...+.-++.|+.|+|++|++..+.  .+..+++|++|||++|.+..++...-.++. |..|.|++|.++.+- ++.++.
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~Lk  254 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLK  254 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhh
Confidence            9988988999999999999999874  788999999999999999998866555564 999999999999874 678899


Q ss_pred             CcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      +|+.||+++|-|.+...-..      +..+..|+.|+|+|||+.|...
T Consensus       255 sL~~LDlsyNll~~hseL~p------LwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEP------LWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             hhhccchhHhhhhcchhhhH------HHHHHHHHHHhhcCCccccCHH
Confidence            99999999999876543321      2236778899999999988653

>KOG4658|consensus

Probab=99.08  E-value=1.3e-10  Score=120.18  Aligned_cols=291  Identities=22%  Similarity=0.259  Sum_probs=155.9

Q ss_pred             CCCcEEeccccc--ccccccc-cccccccceeecccc-cCccCccccccccccceeecccccccCchhhhcCCCCCCEEe
Q psy4257           3 TDLNWLFLNNNR--LKSLEGQ-LGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN   78 (419)
Q Consensus         3 ~~L~~L~l~~n~--l~~l~~~-~~~~~~L~~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~   78 (419)
                      ++|+.|-+..|.  +..++.. |..++.|+.|||++| .+..+|..++.+-+|++|++++..+..+|..++.+..|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            456677777775  5555433 444777777777765 456777777777777777777777777777777777777777


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc---ccccCCccCcEEecccccccccChhhhcCCCCcc----EEEcC
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLS  151 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~  151 (419)
                      +..+.-....+.....+.+|++|.+..-....-.   ..+..+.+|+.+.......  .....+..+..|.    .+.+.
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence            7776644444555666777777777655422111   2223344444444432222  1112222333322    22222


Q ss_pred             CCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hh-----cC-CCCCcEEEcCCCC-CCCcCcccCCCCCCCcE
Q psy4257         152 YNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-AL-----MG-IHGLSRLDLSHNK-LRTISPDDFIGLDSLKM  223 (419)
Q Consensus       152 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~-----~~-l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  223 (419)
                      ++....      ....+..+.+|+.|.+.++.+.++.. ..     .. ++++..+...++. ....  .+....++|+.
T Consensus       703 ~~~~~~------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l--~~~~f~~~L~~  774 (889)
T KOG4658|consen  703 GCSKRT------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL--TWLLFAPHLTS  774 (889)
T ss_pred             ccccce------eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc--chhhccCcccE
Confidence            222111      12245667888888888888764421 11     10 2223222222222 2222  22233488999


Q ss_pred             EEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCccee
Q psy4257         224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR  301 (419)
Q Consensus       224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~  301 (419)
                      |.+..+....-+......+..+..+.+..+.+..++  ....+++++..+.+.+=.+..+.....    ..+..+|.+.+
T Consensus       775 l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~----p~l~~~P~~~~  850 (889)
T KOG4658|consen  775 LSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEEC----PKLGKLPLLST  850 (889)
T ss_pred             EEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcC----cccccCccccc
Confidence            999888765444333444555665566666665553  334555666666665544443332210    01223555555


Q ss_pred             EEecCC
Q psy4257         302 IYLEGN  307 (419)
Q Consensus       302 l~l~~N  307 (419)
                      +.+.++
T Consensus       851 ~~i~~~  856 (889)
T KOG4658|consen  851 LTIVGC  856 (889)
T ss_pred             cceecc
Confidence            555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.1e-10  Score=80.08  Aligned_cols=59  Identities=44%  Similarity=0.604  Sum_probs=30.6

Q ss_pred             CCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257         196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS  254 (419)
Q Consensus       196 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  254 (419)
                      +|++|++++|++..+.+.+|.++++|++|++++|.+..+++..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555555544555555555555555555555555555555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.3e-10  Score=77.77  Aligned_cols=60  Identities=42%  Similarity=0.553  Sum_probs=52.2

Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcc
Q psy4257         219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNI  278 (419)
Q Consensus       219 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l  278 (419)
                      ++|++|++++|++..++...|..+++|++|++++|.|..++ ..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46889999999999998888888999999999999998887 5688899999999988875

...

>PLN03150 hypothetical protein; Provisional

Probab=98.96  E-value=1.5e-09  Score=109.85  Aligned_cols=111  Identities=23%  Similarity=0.226  Sum_probs=90.6

Q ss_pred             CcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCC
Q psy4257         197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAH  275 (419)
Q Consensus       197 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~  275 (419)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++.+ +|..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            7789999999988888889999999999999999987777778889999999999999985 778889999999999999


Q ss_pred             CcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257         276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD  313 (419)
Q Consensus       276 N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~  313 (419)
                      |++++.-+..+...      ...+..+++.+|+..|.+
T Consensus       500 N~l~g~iP~~l~~~------~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        500 NSLSGRVPAALGGR------LLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcccccCChHHhhc------cccCceEEecCCccccCC
Confidence            99985443322210      234557889999988864

>KOG4658|consensus

Probab=98.93  E-value=6.4e-10  Score=115.16  Aligned_cols=130  Identities=21%  Similarity=0.294  Sum_probs=105.7

Q ss_pred             cccccceeecccccCccCccccccccccceeeccccc--ccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          24 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR--ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        24 ~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~--i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      .....+++.+.+|.+..++... .++.|++|-+.+|.  +..++ +.|..++.|++|||++|.--+-.|..++++-+|++
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            3567888888888888776554 34479999888886  56664 56888999999999988766666788999999999


Q ss_pred             EEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCC
Q psy4257         101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK  154 (419)
Q Consensus       101 L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  154 (419)
                      |++++..+..+|.++.++.+|.+|++..+......+.....+.+|++|.+....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999999999999999999999999887655567777778999999887654

>KOG1859|consensus

Probab=98.87  E-value=4.5e-11  Score=115.70  Aligned_cols=176  Identities=25%  Similarity=0.363  Sum_probs=124.2

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCc-----------cCccccccccccceeecccccccCchhhhcC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE-----------ALPSDIQLFSQLGSLYANNNRITSLDGLLRG   70 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~-----------~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~   70 (419)
                      ++.|+.|.|.++.|....+-..--..|++|...+. +.           ++-.++ .+..|...+++.|.+..+..++.-
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~mD~SLql  185 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVLMDESLQL  185 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHhHHHHHHH
Confidence            45666666666666543332222334444433322 11           111111 124677778888888888888888


Q ss_pred             CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEE
Q psy4257          71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD  149 (419)
Q Consensus        71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  149 (419)
                      ++.|+.|+|++|+++.+.  .+..+++|++|||+.|.+..+|. ...++ +|..|.|++|.++.+  ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccc
Confidence            999999999999999884  78899999999999999998874 23444 499999999998875  4678889999999


Q ss_pred             cCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch
Q psy4257         150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD  188 (419)
Q Consensus       150 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  188 (419)
                      +++|-|.+...-    ..+..+..|+.|.|.+|.+-.-|
T Consensus       261 lsyNll~~hseL----~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  261 LSYNLLSEHSEL----EPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhHhhhhcchhh----hHHHHHHHHHHHhhcCCccccCH
Confidence            999987654321    13456788999999999887544

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=9e-09  Score=104.29  Aligned_cols=106  Identities=21%  Similarity=0.283  Sum_probs=88.4

Q ss_pred             CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcC
Q psy4257          73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS  151 (419)
Q Consensus        73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  151 (419)
                      .++.|+|++|.+.+..+..+..+.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999999988889999999999999999997 678889999999999999999999889999999999999999


Q ss_pred             CCCCccccCCCCCCCccc-CcccccEEEcCCCC
Q psy4257         152 YNKINKFGTRNEGKNQVQ-GVTNIFELKLQHNE  183 (419)
Q Consensus       152 ~n~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~  183 (419)
                      +|++.+..+.     .+. ...++..+++.+|.
T Consensus       499 ~N~l~g~iP~-----~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPA-----ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCCh-----HHhhccccCceEEecCCc
Confidence            9988754332     122 23456678888885

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.76  E-value=2.5e-09  Score=92.42  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             ccccceeecccccCcc-----CccccccccccceeecccccccC-----------chhhhcCCCCCCEEecCCCCCcccC
Q psy4257          25 LSKLQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITS-----------LDGLLRGLTKLQVFNMDFNQITMVR   88 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----------l~~~~~~l~~L~~L~l~~n~l~~~~   88 (419)
                      +..+..++|++|.|..     +...+..-.+|+..++++-....           +-.++.+|++|+..+||.|.+..-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5666677777776652     22234444556666555432111           2234567777888888877765443


Q ss_pred             h----hhhcCCCCCCEEEccCCcCcccc--------------ccccCCccCcEEecccccccccChhh----hcCCCCcc
Q psy4257          89 R----DEFQNLHNLDSISLQNNQITSMN--------------SSLSGLTKLAYLYLSHNQLTEFLLDD----IRGLKRLR  146 (419)
Q Consensus        89 ~----~~~~~~~~L~~L~L~~n~l~~i~--------------~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~  146 (419)
                      +    +.++....|++|.+++|.+.-+.              .....-+.|+...+..|++.......    +..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            3    34456677788888877766331              11234467888888888876543322    22225778


Q ss_pred             EEEcCCCCCcc
Q psy4257         147 TVDLSYNKINK  157 (419)
Q Consensus       147 ~L~l~~n~l~~  157 (419)
                      .+.+.+|.|.-
T Consensus       189 ~vki~qNgIrp  199 (388)
T COG5238         189 EVKIQQNGIRP  199 (388)
T ss_pred             eEEeeecCcCc
Confidence            88888887753

>KOG4579|consensus

Probab=98.74  E-value=6.5e-10  Score=86.13  Aligned_cols=133  Identities=20%  Similarity=0.242  Sum_probs=99.7

Q ss_pred             cccEEEcCCCCCcCchhhh---cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEe
Q psy4257         173 NIFELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELF  249 (419)
Q Consensus       173 ~L~~L~l~~n~l~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  249 (419)
                      .+..++|+.|++..++...   .....|+..+|++|.+...++..-..++.++.|+|++|.|.+++.+ +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            3455667777666555443   4455677788899988887555555567888999999999998877 77889999999


Q ss_pred             CcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         250 VSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       250 L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      ++.|.+...|+.+..+.++-.||..+|.+..|+.+.+...      .  .-.+.+.++||.-.|.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~------~--~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSS------L--PALIKLGNEPLGDETK  163 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccc------c--HHHHHhcCCcccccCc
Confidence            9999999888887778899999999999998888755321      2  2234567888877664

>KOG2982|consensus

Probab=98.72  E-value=3.4e-09  Score=92.70  Aligned_cols=106  Identities=24%  Similarity=0.320  Sum_probs=75.8

Q ss_pred             ccceeecccccCccCccc--c-ccccccceeecccccccC---chhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          27 KLQLLVIEQNQLEALPSD--I-QLFSQLGSLYANNNRITS---LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~--~-~~~~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      -++.|.+.++.|....+.  | ..+..++.|||.+|.|+.   |...+.+++.|+.|+++.|++.......-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            445666777777655322  3 456788999999998886   5567788999999999999887654322245678899


Q ss_pred             EEccCCcCc--cccccccCCccCcEEeccccccc
Q psy4257         101 ISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus       101 L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~  132 (419)
                      |.|.+..+.  .....+..+|.++.|.++.|.+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            999888665  44456777888888888888544

>KOG2120|consensus

Probab=98.64  E-value=1.2e-09  Score=95.53  Aligned_cols=174  Identities=18%  Similarity=0.111  Sum_probs=87.6

Q ss_pred             ccceeecccccCc--cCccccccccccceeecccccccC-chhhhcCCCCCCEEecCCCC-CcccCh-hhhcCCCCCCEE
Q psy4257          27 KLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQ-ITMVRR-DEFQNLHNLDSI  101 (419)
Q Consensus        27 ~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L  101 (419)
                      +|++|||++..|+  .+-.-++.|.+|+.|.|.++++.. |-..++...+|+.|+++.+. ++.... -.|.++..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4666666666665  232335666666666666666664 44445555666666666543 332211 124556666666


Q ss_pred             EccCCcCccc--cccccC-CccCcEEecccccc--ccc-ChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCccccc
Q psy4257         102 SLQNNQITSM--NSSLSG-LTKLAYLYLSHNQL--TEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF  175 (419)
Q Consensus       102 ~L~~n~l~~i--~~~l~~-l~~L~~L~l~~n~l--~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~  175 (419)
                      +|++|.+..-  -..+.+ -++|+.|+|+++.-  ... ..-....+++|..|||++|..-.-+    ....+..++.|+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~  341 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQ  341 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch----HHHHHHhcchhe
Confidence            6666654411  001111 13566666665531  111 1112244566666666665332111    112344456666


Q ss_pred             EEEcCCCCCcCchh---hhcCCCCCcEEEcCCC
Q psy4257         176 ELKLQHNEIENLDG---ALMGIHGLSRLDLSHN  205 (419)
Q Consensus       176 ~L~l~~n~l~~~~~---~~~~l~~L~~L~Ls~n  205 (419)
                      +|.++.|..- +|.   .+...+.|.+|+..++
T Consensus       342 ~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence            6666666432 121   2355677777777664

>KOG1644|consensus

Probab=98.64  E-value=3.8e-08  Score=81.60  Aligned_cols=125  Identities=26%  Similarity=0.329  Sum_probs=89.6

Q ss_pred             cceeecccccCccCccccc-cccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          28 LQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        28 L~~L~L~~n~l~~i~~~~~-~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      =+.++|.+.++..+-. ++ ...+...+||++|.+..++. |.+++.|..|.+.+|+|+.+.+.--..+++|+.|.|.+|
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            4566777666664422 22 23467778888888887765 678888888888888888888776666778888888888


Q ss_pred             cCcccc--ccccCCccCcEEecccccccccC---hhhhcCCCCccEEEcCCCC
Q psy4257         107 QITSMN--SSLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLSYNK  154 (419)
Q Consensus       107 ~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~  154 (419)
                      .|..+.  ..+..+++|++|.+-+|.++...   -..+..+++|+.||+.+-.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            887663  35677888888888888876532   2345667888888876643

>KOG2982|consensus

Probab=98.63  E-value=6.1e-09  Score=91.17  Aligned_cols=197  Identities=21%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             CCCEEecCCCCCcccChh-hh-cCCCCCCEEEccCCcCccc---cccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257          73 KLQVFNMDFNQITMVRRD-EF-QNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT  147 (419)
Q Consensus        73 ~L~~L~l~~n~l~~~~~~-~~-~~~~~L~~L~L~~n~l~~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  147 (419)
                      .++.|.+.++.|..+... .| ..+..++.++|.+|.|+..   ...+.++|.|+.|+|+.|++...+...-..+.+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344445555555443321 12 2345566666666666633   234456666666666666665432211134456666


Q ss_pred             EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc----------hh---hhcCCCCCcEEEcCCCCCCCcCccc
Q psy4257         148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL----------DG---ALMGIHGLSRLDLSHNKLRTISPDD  214 (419)
Q Consensus       148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~---~~~~l~~L~~L~Ls~n~l~~~~~~~  214 (419)
                      |-|.+..+.....    ...+..++.+++|+++.|.+..+          ..   .+...+.+..++++-|++..+    
T Consensus       126 lVLNgT~L~w~~~----~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~----  197 (418)
T KOG2982|consen  126 LVLNGTGLSWTQS----TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI----  197 (418)
T ss_pred             EEEcCCCCChhhh----hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh----
Confidence            6666665543221    12344455556666666543321          10   111222233333333333333    


Q ss_pred             CCCCCCCcEEEccCCcCcccCc-hhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccc
Q psy4257         215 FIGLDSLKMLDISHNLLTTLEE-TSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       215 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~  280 (419)
                         ++++..+.+..|.+.+... ..+..++.+.-|+|+.|+|.++.  +.+.+++.|..|.+.+|.+..
T Consensus       198 ---Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 ---FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ---cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence               4678888888888876543 34556788889999999998876  568889999999999998764

>KOG1644|consensus

Probab=98.58  E-value=1.1e-07  Score=78.95  Aligned_cols=108  Identities=24%  Similarity=0.359  Sum_probs=81.4

Q ss_pred             CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEe
Q psy4257         195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKAD  272 (419)
Q Consensus       195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~  272 (419)
                      .....+||++|.+..+  ..|..++.|..|.|.+|+|+.|.+.....+++|..|.|.+|.|..+.  ..+..++.|+.|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566788888887665  45777888888888888888888777667888888888888888765  3467788888888


Q ss_pred             cCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         273 LAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       273 L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      +-+|.++.-......    .+..+++++.+++.+=.
T Consensus       120 ll~Npv~~k~~YR~y----vl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLY----VLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeE----EEEecCcceEeehhhhh
Confidence            888888765544322    35568888888887643

>KOG2120|consensus

Probab=98.57  E-value=2.5e-09  Score=93.58  Aligned_cols=176  Identities=23%  Similarity=0.191  Sum_probs=101.6

Q ss_pred             ccceeecccccccC--chhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCcccc--ccccCCccCcEE
Q psy4257          50 QLGSLYANNNRITS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMN--SSLSGLTKLAYL  124 (419)
Q Consensus        50 ~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~--~~l~~l~~L~~L  124 (419)
                      .|++|||++..|+.  +-..+..|.+|+.|.+.++++..-....++...+|+.|+|+.+ .++...  -.+.++..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58888888887774  4566777888888888888888777777888888888888876 455332  246777888888


Q ss_pred             ecccccccccChh-hhcC-CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-CcC-chhhhcCCCCCcEE
Q psy4257         125 YLSHNQLTEFLLD-DIRG-LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-IEN-LDGALMGIHGLSRL  200 (419)
Q Consensus       125 ~l~~n~l~~~~~~-~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~l~~L~~L  200 (419)
                      +|++|.+...... .+.+ -++|..|++++++=.-...  ......+.+++|.+|||++|. ++. .-..|..++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            8888876543211 1111 2456777777653110000  011123445566666666553 221 12334455555665


Q ss_pred             EcCCCCCCCcCccc---CCCCCCCcEEEccCC
Q psy4257         201 DLSHNKLRTISPDD---FIGLDSLKMLDISHN  229 (419)
Q Consensus       201 ~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n  229 (419)
                      .++.|..  ++|..   |...+.|.+||+.++
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            5555532  22322   233445555554443

>KOG4579|consensus

Probab=98.52  E-value=5.7e-09  Score=80.97  Aligned_cols=110  Identities=19%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             ccceeecccccCccCccc---cccccccceeecccccccCchhhhcC-CCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          27 KLQLLVIEQNQLEALPSD---IQLFSQLGSLYANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~---~~~~~~L~~L~l~~n~i~~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      .+..++|++|++-.+++.   +.....|+..+|++|.+..+|..|.. .+.++.|++++|+|..++.+ ++.++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            455666666666555443   34444555667777777766644433 34667777777777776554 77777777777


Q ss_pred             ccCCcCccccccccCCccCcEEecccccccccChh
Q psy4257         103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD  137 (419)
Q Consensus       103 L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~  137 (419)
                      ++.|.+...|..+..+.+|..|+..+|.+..+..+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            77777776666666677777777777766665444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.44  E-value=2.8e-08  Score=86.05  Aligned_cols=197  Identities=17%  Similarity=0.146  Sum_probs=101.4

Q ss_pred             cCCccCcEEecccccccccChh----hhcCCCCccEEEcCCCCCccccCCCCC--------CCcccCcccccEEEcCCCC
Q psy4257         116 SGLTKLAYLYLSHNQLTEFLLD----DIRGLKRLRTVDLSYNKINKFGTRNEG--------KNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       116 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~  183 (419)
                      ..|++|+.++|++|.+....+.    .+.+-..|.+|.+++|.+.-+.+....        ......-+.|+.+.+.+|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            4445555555555554432221    223334555555555554433222111        0112334567777777777


Q ss_pred             CcCchh-----hhcCCCCCcEEEcCCCCCCCc--Ccc---cCCCCCCCcEEEccCCcCcccCch----hccCCCCCceEe
Q psy4257         184 IENLDG-----ALMGIHGLSRLDLSHNKLRTI--SPD---DFIGLDSLKMLDISHNLLTTLEET----SKTFLPALEELF  249 (419)
Q Consensus       184 l~~~~~-----~~~~l~~L~~L~Ls~n~l~~~--~~~---~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~  249 (419)
                      +.+.+.     .+..-..|+.+.+..|.|..-  ..-   .+..+.+|++|||.+|-++.....    ++...+.|++|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            765542     122234677777877776432  111   123457788888888877654322    333455678888


Q ss_pred             CcCCcccccC-----ccC--CCCCCcCEEecCCCcccc-cchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257         250 VSHNSLTRLD-----KDF--HGLPVLCKADLAHNNIKA-INIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD  313 (419)
Q Consensus       250 L~~N~i~~l~-----~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~  313 (419)
                      +.+|-++.-.     +.|  ...++|..|-..+|.+.. +-...+.... .-..++-|..+.+.||.+.-+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh-hhcccHHHHHHHHccCcchhHH
Confidence            8888765422     112  235677778888876542 1111000000 0112556666778888875443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=4.6e-07  Score=56.95  Aligned_cols=39  Identities=38%  Similarity=0.527  Sum_probs=22.8

Q ss_pred             CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccc
Q psy4257         244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                      +|++|++++|+|+.++..+..+++|+.|++++|+|+.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666555666666666666666666543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=6.2e-07  Score=56.38  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=17.8

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL   41 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i   41 (419)
                      +|++|++++|.|+.++..+..+++|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555444444455555555555554443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.14  E-value=8.7e-06  Score=76.53  Aligned_cols=136  Identities=13%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccc-cccccChhhhcCCCCc
Q psy4257          68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRL  145 (419)
Q Consensus        68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L  145 (419)
                      +..+.+++.|++++|.+..++  .+  ..+|+.|.++++ .++.+|..+.  .+|++|++++| .+..+       ..+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL-------P~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL-------PESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc-------cccc
Confidence            445688889999988888775  12  246888988874 6667776553  57888888887 44432       2357


Q ss_pred             cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-C--cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257         146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-I--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK  222 (419)
Q Consensus       146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  222 (419)
                      +.|++..+....+.         .-.++|+.|.+.+++ .  ..++.  .-..+|++|++++|....+ |..+.  .+|+
T Consensus       115 e~L~L~~n~~~~L~---------~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk  180 (426)
T PRK15386        115 RSLEIKGSATDSIK---------NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIIL-PEKLP--ESLQ  180 (426)
T ss_pred             ceEEeCCCCCcccc---------cCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccC-ccccc--ccCc
Confidence            77777766543321         112356666664432 1  11111  1124677888877765433 33343  5777


Q ss_pred             EEEccCCc
Q psy4257         223 MLDISHNL  230 (419)
Q Consensus       223 ~L~L~~n~  230 (419)
                      .|+++.+.
T Consensus       181 ~L~ls~n~  188 (426)
T PRK15386        181 SITLHIEQ  188 (426)
T ss_pred             EEEecccc
Confidence            77777654

>KOG3665|consensus

Probab=98.12  E-value=1.3e-06  Score=88.60  Aligned_cols=81  Identities=25%  Similarity=0.318  Sum_probs=40.2

Q ss_pred             ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcc-cChhhhcCCCCCCEE
Q psy4257          25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSI  101 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L  101 (419)
                      +|.|++|.+++-.+.  ++......+++|..||+++..++.+. .++++++|+.|.+.+=.+.. -....+.++++|++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            555666655555443  22222345555555555555555552 25555555555555444332 112234455555555


Q ss_pred             EccCC
Q psy4257         102 SLQNN  106 (419)
Q Consensus       102 ~L~~n  106 (419)
                      |++..
T Consensus       226 DIS~~  230 (699)
T KOG3665|consen  226 DISRD  230 (699)
T ss_pred             ecccc
Confidence            55554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.10  E-value=2.6e-05  Score=73.43  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=90.7

Q ss_pred             cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcE
Q psy4257          45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAY  123 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~  123 (419)
                      +..+.+++.|++++|.+..+|. +  ..+|+.|.+++|.--...++.+  ..+|+.|.+++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            4457899999999999998882 2  2479999999854333334434  258999999998 7776654      4777


Q ss_pred             EecccccccccChhhhcCC-CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEc
Q psy4257         124 LYLSHNQLTEFLLDDIRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL  202 (419)
Q Consensus       124 L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L  202 (419)
                      |++..+....     +..+ ++|+.|.+.+++......   .  ...-..+|+.|.+++|....+|..+.  .+|+.|++
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~---l--p~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQAR---I--DNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITL  184 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheeccccccccccc---c--ccccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence            7777655432     2222 457788875433111000   0  01123689999999998766664443  57999999


Q ss_pred             CCCC
Q psy4257         203 SHNK  206 (419)
Q Consensus       203 s~n~  206 (419)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.02  E-value=1.9e-05  Score=63.08  Aligned_cols=13  Identities=38%  Similarity=0.544  Sum_probs=4.6

Q ss_pred             cCCCCCCCcEEEc
Q psy4257         214 DFIGLDSLKMLDI  226 (419)
Q Consensus       214 ~~~~l~~L~~L~L  226 (419)
                      .|..+.+|+.+++
T Consensus        76 ~F~~~~~l~~i~~   88 (129)
T PF13306_consen   76 AFSNCTNLKNIDI   88 (129)
T ss_dssp             TTTT-TTECEEEE
T ss_pred             ccccccccccccc
Confidence            3333333444433

>KOG2123|consensus

Probab=98.00  E-value=3.2e-07  Score=79.81  Aligned_cols=98  Identities=21%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEec
Q psy4257          49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYL  126 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l  126 (419)
                      .+.+.|++.+|.+..|.- ...|+.|+.|.|+-|+|+.+.+  |..|.+|++|+|..|.|.++.  ..+.++++|+.|+|
T Consensus        19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            344445555555554432 3455666666666666665533  555666666666666666553  24566666666666


Q ss_pred             ccccccccCh-----hhhcCCCCccEEE
Q psy4257         127 SHNQLTEFLL-----DDIRGLKRLRTVD  149 (419)
Q Consensus       127 ~~n~l~~~~~-----~~~~~l~~L~~L~  149 (419)
                      ..|.-.+...     ..+.-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666544322     2344456665554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.98  E-value=3.1e-05  Score=61.78  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=12.6

Q ss_pred             hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257          68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN  105 (419)
Q Consensus        68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  105 (419)
                      |.++.+|+.+.+.. .+..+...+|.++.+|+.+.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            34444444444442 34444444444444444444433

>KOG2123|consensus

Probab=97.97  E-value=2.5e-07  Score=80.51  Aligned_cols=105  Identities=24%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccC-hhhhcCCCCccEEE
Q psy4257          71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVD  149 (419)
Q Consensus        71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  149 (419)
                      +.+.+.|++++|.|..|.  ....|+.|++|.|+-|.|+++ ..+..+.+|++|+|+.|.|.++. ...+.++++|+.|+
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            567889999999999884  467899999999999999999 67899999999999999998752 24567889999999


Q ss_pred             cCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257         150 LSYNKINKFGTRNEGKNQVQGVTNIFELK  178 (419)
Q Consensus       150 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  178 (419)
                      |..|.=.+..+...-...++.+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            99987654433322223445566666654

>TIGR00864 PCC polycystin cation channel protein

Probab=97.94  E-value=8.6e-06  Score=91.01  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=46.8

Q ss_pred             ecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCC
Q psy4257         272 DLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD  340 (419)
Q Consensus       272 ~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~  340 (419)
                      ||++|+|+.|+...+.       .+.+|+.|+|++|||.|||.+.||..|++.............|..+
T Consensus         1 DLSnN~LstLp~g~F~-------~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP   62 (2740)
T TIGR00864         1 DISNNKISTIEEGICA-------NLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGP   62 (2740)
T ss_pred             CCCCCcCCccChHHhc-------cCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCC
Confidence            5788888888887654       4788999999999999999999999999875332222234456443

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4341|consensus

Probab=97.87  E-value=6.9e-07  Score=82.03  Aligned_cols=112  Identities=21%  Similarity=0.073  Sum_probs=54.7

Q ss_pred             cCCCCCcEEEcCCCC-CCCcCcccCC-CCCCCcEEEccCCcCcccC--chhccCCCCCceEeCcCCcccc------cCcc
Q psy4257         192 MGIHGLSRLDLSHNK-LRTISPDDFI-GLDSLKMLDISHNLLTTLE--ETSKTFLPALEELFVSHNSLTR------LDKD  261 (419)
Q Consensus       192 ~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~------l~~~  261 (419)
                      .+..+|+.|-+++++ ++......++ ++..|+.+++..+......  ...-.+++.|+.|.|+++....      +...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            345566666666653 3333222222 3456666666665432211  1112346667777777653321      1222


Q ss_pred             CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257         262 FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV  309 (419)
Q Consensus       262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~  309 (419)
                      -..+..|..+.|++.....-  ..+.    ++...++|+++++.+..-
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d--~~Le----~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITD--ATLE----HLSICRNLERIELIDCQD  438 (483)
T ss_pred             cccccccceeeecCCCCchH--HHHH----HHhhCcccceeeeechhh
Confidence            34455666777776654321  1111    233356777777766543

>KOG3665|consensus

Probab=97.86  E-value=8.1e-06  Score=82.99  Aligned_cols=136  Identities=20%  Similarity=0.183  Sum_probs=80.7

Q ss_pred             cccceeecccccccC---chhhhcCCCCCCEEecCCCCCcccC-hhhhcCCCCCCEEEccCCcCccccccccCCccCcEE
Q psy4257          49 SQLGSLYANNNRITS---LDGLLRGLTKLQVFNMDFNQITMVR-RDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL  124 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L  124 (419)
                      .+|++|++++...-.   ....-..+|.|+.|.+++-.+..-. ...+.++++|..||+++.+++.+ .+++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            467788887754332   1122345678888887775554332 12345677888888888888877 677788888888


Q ss_pred             ecccccccc-cChhhhcCCCCccEEEcCCCCCccccC-CCCCCCcccCcccccEEEcCCCCCc
Q psy4257         125 YLSHNQLTE-FLLDDIRGLKRLRTVDLSYNKINKFGT-RNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       125 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                      .+++=.+.. .....+..+++|+.||+|..+...... .....+....+++|+.||+++..+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            877766654 223455667888888887765443220 0000112233555666666655443

>KOG2739|consensus

Probab=97.74  E-value=9.5e-06  Score=70.43  Aligned_cols=84  Identities=27%  Similarity=0.414  Sum_probs=37.4

Q ss_pred             ccccceeecccccCccCccccccccccceeecccc--ccc-CchhhhcCCCCCCEEecCCCCCcccCh-hhhcCCCCCCE
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN--RIT-SLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDS  100 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n--~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~  100 (419)
                      +..|+.|++.+..++.+ ..|-.+++|+.|.++.|  .+. +++.....+++|++|++++|+|..+.. ..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            44555555555555544 23444455555555555  222 133223334555555555555543211 11233344444


Q ss_pred             EEccCCcCc
Q psy4257         101 ISLQNNQIT  109 (419)
Q Consensus       101 L~L~~n~l~  109 (419)
                      |++.+|..+
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            444444443

>KOG2739|consensus

Probab=97.63  E-value=2.6e-05  Score=67.81  Aligned_cols=104  Identities=22%  Similarity=0.234  Sum_probs=76.0

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccC--c-cCccccccccccceeecccccccCch--hhhcCCCCCCE
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL--E-ALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQV   76 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l--~-~i~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~l~~L~~   76 (419)
                      +..|+.|.+.+..++.+. .+..+++|+.|.++.|..  . .++.....+++|++|++++|+|..+.  ..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            456778888888887764 477799999999999944  3 44444566799999999999998653  23677788999


Q ss_pred             EecCCCCCcccCh---hhhcCCCCCCEEEccCC
Q psy4257          77 FNMDFNQITMVRR---DEFQNLHNLDSISLQNN  106 (419)
Q Consensus        77 L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n  106 (419)
                      |++.+|..+.+..   ..|.-+++|++|+-...
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            9999998766433   23555566666655443

>KOG4341|consensus

Probab=97.60  E-value=9.2e-06  Score=74.84  Aligned_cols=59  Identities=24%  Similarity=0.188  Sum_probs=24.9

Q ss_pred             CCCCcEEEccCCc-CcccCchhcc-CCCCCceEeCcCCcccc---cCccCCCCCCcCEEecCCC
Q psy4257         218 LDSLKMLDISHNL-LTTLEETSKT-FLPALEELFVSHNSLTR---LDKDFHGLPVLCKADLAHN  276 (419)
Q Consensus       218 l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~i~~---l~~~~~~l~~L~~L~L~~N  276 (419)
                      ..+|++|-++.++ +++.....++ +.+.|+.+++..+....   +...-.+++.|+.+.++++
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc  382 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC  382 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence            4555555555553 3332222221 24455555555543221   1111234455555555544

>KOG4308|consensus

Probab=97.31  E-value=2.9e-06  Score=82.56  Aligned_cols=181  Identities=28%  Similarity=0.325  Sum_probs=95.9

Q ss_pred             CcEEecccccccc-----cccccccccccceeecccccCcc-----Cccccccc-cccceeecccccccC-----chhhh
Q psy4257           5 LNWLFLNNNRLKS-----LEGQLGTLSKLQLLVIEQNQLEA-----LPSDIQLF-SQLGSLYANNNRITS-----LDGLL   68 (419)
Q Consensus         5 L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~n~l~~-----i~~~~~~~-~~L~~L~l~~n~i~~-----l~~~~   68 (419)
                      +..|.|.+|.+..     +...+...+.|..|++++|.+..     +-..+... ..|++|++..|.+..     +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4556666666652     22334446677777777777662     11123332 445666666666654     33445


Q ss_pred             cCCCCCCEEecCCCCCcccC----hhh----hcCCCCCCEEEccCCcCccc-----cccccCCcc-CcEEeccccccccc
Q psy4257          69 RGLTKLQVFNMDFNQITMVR----RDE----FQNLHNLDSISLQNNQITSM-----NSSLSGLTK-LAYLYLSHNQLTEF  134 (419)
Q Consensus        69 ~~l~~L~~L~l~~n~l~~~~----~~~----~~~~~~L~~L~L~~n~l~~i-----~~~l~~l~~-L~~L~l~~n~l~~~  134 (419)
                      .....++.++++.|.+....    ...    +....++++|.+.+|.++..     ...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            55666777777777653211    111    22355667777777766522     233444444 55577777766543


Q ss_pred             Ch----hhhcCC-CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         135 LL----DDIRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       135 ~~----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      ..    ..+..+ ..++.++++.|.|....... ....+..+..++++.+..|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~-L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD-LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHH-HHHHHhhhHHHHHhhcccCcccc
Confidence            21    223333 45567777777666543221 11223344566666666666653

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=96.88  E-value=0.0008  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             CccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         307 NPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       307 Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      |||.|||.+.||..|++. ...........|..+.
T Consensus         1 NP~~CdC~l~~~~~w~~~-~~~~~~~~~~~C~~P~   34 (51)
T smart00082        1 NPFICDCELRWLLRWLQA-NEHLQDPVSLRCASPS   34 (51)
T ss_pred             CCccCcCCchHHHHHHHh-CCccCCCCCCEeCCcH
Confidence            899999999999999988 2223333456776553

>KOG1947|consensus

Probab=96.79  E-value=0.00034  Score=69.28  Aligned_cols=33  Identities=21%  Similarity=0.113  Sum_probs=16.7

Q ss_pred             CceEeCcCCcccccC--ccCCC-CCCcCEEecCCCc
Q psy4257         245 LEELFVSHNSLTRLD--KDFHG-LPVLCKADLAHNN  277 (419)
Q Consensus       245 L~~L~L~~N~i~~l~--~~~~~-l~~L~~L~L~~N~  277 (419)
                      ++.|+++.+......  ..... +..+..+++.+..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            667777766544332  11111 4555666666654

>KOG0473|consensus

Probab=96.48  E-value=0.00013  Score=62.32  Aligned_cols=88  Identities=11%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             ccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          21 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      .+..+.+.+.||++.|++..+...|+.+..|..|+++.|.|..+|..++....+..+++..|..... |.++...+.+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-CccccccCCcch
Confidence            3455666777777777776666666667777777777777777776677667777777776666555 345677777777


Q ss_pred             EEccCCcCc
Q psy4257         101 ISLQNNQIT  109 (419)
Q Consensus       101 L~L~~n~l~  109 (419)
                      +++.+|.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.30  E-value=0.0015  Score=34.08  Aligned_cols=17  Identities=35%  Similarity=0.616  Sum_probs=7.5

Q ss_pred             cceeecccccCccCccc
Q psy4257          28 LQLLVIEQNQLEALPSD   44 (419)
Q Consensus        28 L~~L~L~~n~l~~i~~~   44 (419)
                      |++|+|++|+|+.||..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947|consensus

Probab=96.25  E-value=0.00078  Score=66.69  Aligned_cols=82  Identities=17%  Similarity=0.054  Sum_probs=36.6

Q ss_pred             CCCCCCcEEEccCCcCcccC-chhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhccccee
Q psy4257         216 IGLDSLKMLDISHNLLTTLE-ETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF  294 (419)
Q Consensus       216 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~  294 (419)
                      ..+++++.+.+.++.+.... ...+.+++.|. ..+..        .......++.|++..........-.....     
T Consensus       359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~--------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~-----  424 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL--------RLCRSDSLRVLNLSDCRLVTDKGLRCLAD-----  424 (482)
T ss_pred             hcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH--------HhccCCccceEecccCccccccchHHHhh-----
Confidence            44566666666665543333 23334444441 11111        11112227788888776543332211100     


Q ss_pred             cCCcceeEEecCCcccc
Q psy4257         295 GLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       295 ~~~~l~~l~l~~Np~~c  311 (419)
                      ....+..+++.+.+..-
T Consensus       425 ~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  425 SCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             hhhccccCCccCccccc
Confidence            03345556666665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.05  E-value=0.0033  Score=32.77  Aligned_cols=15  Identities=47%  Similarity=0.448  Sum_probs=6.6

Q ss_pred             CceEeCcCCcccccC
Q psy4257         245 LEELFVSHNSLTRLD  259 (419)
Q Consensus       245 L~~L~L~~N~i~~l~  259 (419)
                      |++|+|++|+|+.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            344444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308|consensus

Probab=95.95  E-value=8.1e-05  Score=72.59  Aligned_cols=181  Identities=24%  Similarity=0.269  Sum_probs=102.4

Q ss_pred             cceeecccccCcc-----CccccccccccceeecccccccC-----chhhhcCC-CCCCEEecCCCCCcccCh----hhh
Q psy4257          28 LQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITS-----LDGLLRGL-TKLQVFNMDFNQITMVRR----DEF   92 (419)
Q Consensus        28 L~~L~L~~n~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l-~~L~~L~l~~n~l~~~~~----~~~   92 (419)
                      +..|.|.+|.+..     +...+..+..|..|++++|.+..     +-..+... ..++.|++..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777777652     22345666777777777777763     11223333 456667777777665443    334


Q ss_pred             cCCCCCCEEEccCCcCccc-----cccc----cCCccCcEEecccccccccC----hhhhcCCCC-ccEEEcCCCCCccc
Q psy4257          93 QNLHNLDSISLQNNQITSM-----NSSL----SGLTKLAYLYLSHNQLTEFL----LDDIRGLKR-LRTVDLSYNKINKF  158 (419)
Q Consensus        93 ~~~~~L~~L~L~~n~l~~i-----~~~l----~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~  158 (419)
                      .....++.++++.|.+...     +..+    ....++++|.+.+|.++...    ...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            4466777777777766421     2222    24566777777777765321    223344444 56677777776654


Q ss_pred             cCCCCCCCcccCc-ccccEEEcCCCCCcCc-----hhhhcCCCCCcEEEcCCCCCCC
Q psy4257         159 GTRNEGKNQVQGV-TNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRT  209 (419)
Q Consensus       159 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~Ls~n~l~~  209 (419)
                      .... ....+..+ ..++.+++..|.++.-     ...+..+..++.+.+++|.+..
T Consensus       249 g~~~-L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEK-LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHH-HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2111 01122233 4567777777776632     3444556677777777777643

>KOG0473|consensus

Probab=95.45  E-value=0.00052  Score=58.72  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             ccCcc-ccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccC
Q psy4257          39 EALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG  117 (419)
Q Consensus        39 ~~i~~-~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~  117 (419)
                      +++|. ++..+...+.||++.|++..+...|.-+..|..|+++.|++..++ ..+.....++.+++.+|..+..|.++..
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhCCccccc
Confidence            34543 466677888899999988887777777888889999998887774 4577778888888889999888888888


Q ss_pred             CccCcEEecccccccc
Q psy4257         118 LTKLAYLYLSHNQLTE  133 (419)
Q Consensus       118 l~~L~~L~l~~n~l~~  133 (419)
                      .+.++++++..+.+..
T Consensus       110 ~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cCCcchhhhccCcchH
Confidence            9999999988888654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.20  E-value=0.011  Score=28.62  Aligned_cols=12  Identities=33%  Similarity=0.506  Sum_probs=3.6

Q ss_pred             cceeecccccCc
Q psy4257          28 LQLLVIEQNQLE   39 (419)
Q Consensus        28 L~~L~L~~n~l~   39 (419)
                      |+.|+|++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.97  E-value=0.015  Score=28.10  Aligned_cols=10  Identities=40%  Similarity=0.421  Sum_probs=3.0

Q ss_pred             ceEeCcCCcc
Q psy4257         246 EELFVSHNSL  255 (419)
Q Consensus       246 ~~L~L~~N~i  255 (419)
                      +.|+|++|++
T Consensus         4 ~~L~l~~n~L   13 (17)
T PF13504_consen    4 RTLDLSNNRL   13 (17)
T ss_dssp             SEEEETSS--
T ss_pred             CEEECCCCCC
Confidence            3333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.94  E-value=0.052  Score=29.44  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=9.3

Q ss_pred             CCcEEEccCCcCcccCchhc
Q psy4257         220 SLKMLDISHNLLTTLEETSK  239 (419)
Q Consensus       220 ~L~~L~L~~n~l~~~~~~~~  239 (419)
                      +|+.|+|++|+|..++...|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44444555554444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.94  E-value=0.052  Score=29.44  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=9.3

Q ss_pred             CCcEEEccCCcCcccCchhc
Q psy4257         220 SLKMLDISHNLLTTLEETSK  239 (419)
Q Consensus       220 ~L~~L~L~~n~l~~~~~~~~  239 (419)
                      +|+.|+|++|+|..++...|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44444555554444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.68  E-value=0.069  Score=28.93  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=11.3

Q ss_pred             CCCCEEecCCCCCcccChhhh
Q psy4257          72 TKLQVFNMDFNQITMVRRDEF   92 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~   92 (419)
                      ++|+.|+|++|+|..+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.68  E-value=0.069  Score=28.93  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=11.3

Q ss_pred             CCCCEEecCCCCCcccChhhh
Q psy4257          72 TKLQVFNMDFNQITMVRRDEF   92 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~   92 (419)
                      ++|+.|+|++|+|..+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>KOG3864|consensus

Probab=93.40  E-value=0.017  Score=48.64  Aligned_cols=81  Identities=23%  Similarity=0.229  Sum_probs=58.9

Q ss_pred             CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc-Ccccc-ccc-cCCccCcEEeccccc-ccccChhhhcCCCCccE
Q psy4257          72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSMN-SSL-SGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRT  147 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~i~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  147 (419)
                      ..++.++.+++.|..+.-+.+.+++.++.|.+.+|. +...- +.+ ...++|+.|+|++|. |++.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            357888999999988888888888889988888873 33110 111 134688999998874 77666667777888888


Q ss_pred             EEcCC
Q psy4257         148 VDLSY  152 (419)
Q Consensus       148 L~l~~  152 (419)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            87765

>KOG3864|consensus

Probab=88.65  E-value=0.11  Score=43.82  Aligned_cols=79  Identities=18%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             ccceeecccccccCch-hhhcCCCCCCEEecCCCCCcc-cChhhhc-CCCCCCEEEccCC-cCcccc-ccccCCccCcEE
Q psy4257          50 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM-VRRDEFQ-NLHNLDSISLQNN-QITSMN-SSLSGLTKLAYL  124 (419)
Q Consensus        50 ~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~~~~L~~L~L~~n-~l~~i~-~~l~~l~~L~~L  124 (419)
                      .++.++.++..|.... ..+..++.++.|.+.+|.--+ --.+.++ -.++|+.|+|++| +|++-. ..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4555555555555432 334555555555555553211 0001111 2356666666666 555321 334555666666


Q ss_pred             eccc
Q psy4257         125 YLSH  128 (419)
Q Consensus       125 ~l~~  128 (419)
                      .|.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.53  E-value=0.46  Score=25.79  Aligned_cols=16  Identities=38%  Similarity=0.538  Sum_probs=9.4

Q ss_pred             CCCcEEeccccccccc
Q psy4257           3 TDLNWLFLNNNRLKSL   18 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l   18 (419)
                      ++|++|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666666544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.80  E-value=0.17  Score=26.80  Aligned_cols=16  Identities=31%  Similarity=0.399  Sum_probs=6.7

Q ss_pred             CCCCEEecCCCCCccc
Q psy4257          72 TKLQVFNMDFNQITMV   87 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~   87 (419)
                      ++|+.|+|++|+|...
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555554433

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.50  E-value=0.54  Score=25.41  Aligned_cols=17  Identities=53%  Similarity=0.636  Sum_probs=10.8

Q ss_pred             CCceEeCcCCcccccCc
Q psy4257         244 ALEELFVSHNSLTRLDK  260 (419)
Q Consensus       244 ~L~~L~L~~N~i~~l~~  260 (419)
                      +|+.|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56666666666666653

>KOG3763|consensus

Probab=81.34  E-value=0.86  Score=44.54  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=17.3

Q ss_pred             CCCcEEEccCCcCcccCch--hccCCCCCceEeCcCC
Q psy4257         219 DSLKMLDISHNLLTTLEET--SKTFLPALEELFVSHN  253 (419)
Q Consensus       219 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N  253 (419)
                      +.+..+.|++|++..+...  .-...|+|+.|+|++|
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            4455556666655544321  1112455566666665

>KOG3763|consensus

Probab=80.10  E-value=1  Score=44.11  Aligned_cols=60  Identities=25%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             ccccceeecccccCccCc---cccccccccceeecccc--cccCchh--hhcCCCCCCEEecCCCCCc
Q psy4257          25 LSKLQLLVIEQNQLEALP---SDIQLFSQLGSLYANNN--RITSLDG--LLRGLTKLQVFNMDFNQIT   85 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~---~~~~~~~~L~~L~l~~n--~i~~l~~--~~~~l~~L~~L~l~~n~l~   85 (419)
                      .+.+..++|++|++..+.   .-....++|+.|+|++|  .+...++  .+++ ..|++|-+.||.+.
T Consensus       217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC  283 (585)
T ss_pred             CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence            556666666666665441   11244466677777766  3333221  1222 34667777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	419
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		8e-14
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		9e-13
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-12
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-12
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-11
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-11
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-10
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-10
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-10
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-10
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-10
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-10
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		9e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-09
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-07
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-06
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		7e-08
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-08
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-07
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-07
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		3e-07
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		3e-07
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-07
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		3e-07
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		4e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-06
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-06
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-06
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-06
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-06
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-06
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-06
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		4e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-06
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		4e-06
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		4e-06
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-06
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		4e-06
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		4e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		5e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		6e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		6e-06
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		7e-06
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		7e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		7e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		7e-06
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		8e-06
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		8e-06
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		8e-06
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		8e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-06
4ecn_A	876	Crystal Structure Of A Leucine-Rich Repeat Protein		1e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		4e-04
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		4e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		2e-05
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		2e-05
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		2e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-04
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		4e-04
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		2e-05
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		3e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-04
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		5e-05
2wqx_A	289	Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutan		5e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		6e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		7e-05
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-04
2wqw_A	286	Double-Disulfide Cross-Linked Crystal Dimer Of The		1e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		3e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		9e-04

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 49/283 (17%)
Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIR 140
           N I+ +R+D+F+ L +L ++ L NN+I+ ++  + S L KL  LY+S N L E   +   
Sbjct: 64  NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS 123
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-------LDG---- 189
            L  LR  D   N+I K       K    G+ N+  +++  N +EN        DG    
Sbjct: 124 SLVELRIHD---NRIRKVP-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 190 -------ALMGI-----HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
                   L GI       L+ L L HNK++ I  +D +    L  L + HN +  +E  
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI-FGL 296
           S +FLP L EL + +N L+R+      L +L    L  NNI  + +       C + FG+
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN----DFCPVGFGV 291
Query: 297 NSTLRIYLEG-----NPV----LCDDSMRAVIDAMETINNNTK 330
               R Y  G     NPV    +   + R V D +     N K
Sbjct: 292 K---RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 23/286 (8%)
Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
           +V  +  L  +P  I   ++  +L  NN ++   D   R L  L+V  +  N I  +   
Sbjct: 59  VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVG 117
Query: 91  EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLR 146
            F  L +L+++ L +N +T + S +   L+KL  L+L +N    +  +  + +  L RL 
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL- 176
Query: 147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 206
             DL   ++ K    +EG    +G+ N+  L L    I+++   L  + GL  L++S N 
Sbjct: 177 --DLG--ELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH 229
Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGL 265
              I P  F GL SLK L + ++ ++ +E  +   L +L EL ++HN+L+ L  D F  L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 266 PVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
             L +  L HN              C I  L   LR Y+  N   C
Sbjct: 290 RYLVELHLHHN---------PWNCDCDILWLAWWLREYIPTNSTCC 326

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
           ++  + +L  +P+ I + ++  +L  N+ ++   D   + L  L++  +  N +  +   
Sbjct: 19  VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTF-KHLRHLEILQLSKNLVRKIEVG 77
Query: 91  EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
            F  L +L+++ L +N++T++ + +   L+KL  L+L +N +          +  LR +D
Sbjct: 78  AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209
           L   ++ +    +E     +G+ N+  L L    ++++   L  +  L  L+LS N+L  
Sbjct: 138 LG--ELKRLEYISEAA--FEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDL 192
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVL 268
           I P  F GL SL+ L + H  + T+E  +   L +LEEL +SHN+L  L  D F  L  L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
            +  L HN              C +  L+  L+  +  N   C
Sbjct: 253 ERVHLNHN---------PWHCNCDVLWLSWWLKETVPSNTTCC 286

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
           ++  + +L  +P+ I + ++  +L  N+ ++   D   + L  L++  +  N +  +   
Sbjct: 19  VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTF-KHLRHLEILQLSKNLVRKIEVG 77
Query: 91  EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
            F  L +L+++ L +N++T++ + +   L+KL  L+L +N +          +  LR +D
Sbjct: 78  AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209
           L   ++ +    +E     +G+ N+  L L    ++++   L  +  L  L+LS N+L  
Sbjct: 138 LG--ELKRLEYISEAA--FEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDL 192
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVL 268
           I P  F GL SL+ L + H  + T+E  +   L +LEEL +SHN+L  L  D F  L  L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
            +  L HN              C +  L+  L+  +  N   C
Sbjct: 253 ERVHLNHN---------PWHCNCDVLWLSWWLKETVPSNTTCC 286

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 33/284 (11%)
Query: 15  LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
           +KS++G +  L+ L  +    NQL  + + ++  ++L  +  NNN+I  +  L  L  LT
Sbjct: 53  IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73  KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
            L +FN   NQIT +  D  +NL NL+ + L +N I+ + S+LSGLT L  L  S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
           +  L  +  L  L  +D+S NK++      +           NQ+  +      TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L  N+++++ G L  +  L+ LDL++N++  ++P    GL  L  L +  N ++ +   
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
           +   L AL  L ++ N L  +      L  L    L  NNI  I
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 320

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 33/300 (11%)
Query: 15  LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
           +KS++G +  L+ L  +    NQL  + + ++  ++L  +  NNN+I  +  L  L  LT
Sbjct: 53  IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73  KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
            L +FN   NQIT +  D  +NL NL+ + L +N I+ + S+LSGLT L  L  S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
           +  L  +  L  L  +D+S NK++      +           NQ+  +      TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L  N+++++ G L  +  L+ LDL++N++  ++P    GL  L  L +  N ++ +   
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
           +   L AL  L ++ N L  +      L  L    L  NNI  I+   +L    ++F  N
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 336

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 33/284 (11%)
Query: 15  LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
           +KS++G +  L+ L  +    NQL  + + ++  ++L  +  NNN+I  +  L  L  LT
Sbjct: 53  IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73  KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
            L +FN   NQIT +  D  +NL NL+ + L +N I+ + S+LSGLT L  L  S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
           +  L  +  L  L  +D+S NK++      +           NQ+  +      TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L  N+++++ G L  +  L+ LDL++N++  ++P    GL  L  L +  N ++ +   
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
           +   L AL  L ++ N L  +      L  L    L  NNI  I
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 320

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 144/298 (48%), Gaps = 27/298 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN--N 59
           LT+L  L L NN++  ++  L  L+ L  L +  N +    SDI   S L SL   N  N
Sbjct: 106 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFGN 160
Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           ++T L  L   LT L+  ++  N+++ +       L NL+S+   NNQI+ + + L  LT
Sbjct: 161 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 216
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  L L+ NQL +  +  +  L  L  +DL+ N+I+           + G+T + ELKL
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 267
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             N+I N+   L G+  L+ L+L+ N+L  ISP     L +L  L +  N ++ +   S 
Sbjct: 268 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 324
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
             L  L+ LF S+N ++ +      L  +      HN I  +   LA  T+    GLN
Sbjct: 325 --LTKLQRLFFSNNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 378

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF------ 134
           N+IT ++  +F+NL NL ++ L NN+I+ ++  + + L KL  LYLS NQL E       
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 135 LLDDIR---------------GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L ++R               GL ++  V+L  N +   G  N      QG+  +  +++
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRI 178
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
               I  +   L     L+ L L  NK+  +      GL++L  L +S N ++ ++  S 
Sbjct: 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
              P L EL +++N L ++         +    L +NNI AI
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170
           A L L +N++TE    D + LK L T+ L  NKI+K                  KNQ++ 
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 171 VT-----NIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLK 222
           +       + EL++  NEI  +  ++  G++ +  ++L  N L++  I    F G+  L 
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAI 281
            + I+   +TT+ +      P+L EL +  N +T++D     GL  L K  L+ N+I A+
Sbjct: 175 YIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 282 -NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340
            N  LA     +   LN+   + + G   L D     V+      NN + I     C P 
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHN--NNISAIGSNDFCPPG 287
Query: 341 SN 342
            N
Sbjct: 288 YN 289

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF------ 134
           N+IT ++  +F+NL NL ++ L NN+I+ ++  + + L KL  LYLS NQL E       
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 135 LLDDIR---------------GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L ++R               GL ++  V+L  N +   G  N      QG+  +  +++
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRI 178
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
               I  +   L     L+ L L  NK+  +      GL++L  L +S N ++ ++  S 
Sbjct: 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
              P L EL +++N L ++         +    L +NNI AI
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170
           A L L +N++TE    D + LK L T+ L  NKI+K                  KNQ++ 
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 171 VT-----NIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLK 222
           +       + EL++  NEI  +  ++  G++ +  ++L  N L++  I    F G+  L 
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAI 281
            + I+   +TT+ +      P+L EL +  N +T++D     GL  L K  L+ N+I A+
Sbjct: 175 YIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 282 -NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340
            N  LA     +   LN+   + + G   L D     V+      NN + I     C P 
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHN--NNISAIGSNDFCPPG 287
Query: 341 SN 342
            N
Sbjct: 288 YN 289

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 27/298 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL--YANNN 59
           LT+L  L L NN++  ++  L  L+ L  L +  N +    SDI   S L SL   +  N
Sbjct: 110 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFGN 164
Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           ++T L  L   LT L+  ++  N+++ +       L NL+S+   NNQI+ + + L  LT
Sbjct: 165 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 220
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  L L+ NQL +  +  +  L  L  +DL+ N+I+           + G+T + ELKL
Sbjct: 221 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 271
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             N+I N+   L G+  L+ L+L+ N+L  ISP     L +L  L +  N ++ +   S 
Sbjct: 272 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 328
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
             L  L+ LF ++N ++ +      L  +      HN I  +   LA  T+    GLN
Sbjct: 329 --LTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 382

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 143/298 (47%), Gaps = 27/298 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN--N 59
           LT+L  L L NN++  ++  L  L+ L  L +  N +    SDI   S L SL   N  N
Sbjct: 106 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFGN 160
Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           ++T L  L   LT L+  ++  N+++ +       L NL+S+   NNQI+ + + L  LT
Sbjct: 161 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 216
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  L L+ NQL +  +  +  L  L  +DL+ N+I+           + G+T + ELKL
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 267
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             N+I N+   L G+  L+ L+L+ N+L  ISP     L +L  L +  N ++ +   S 
Sbjct: 268 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 324
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
             L  L+ LF  +N ++ +      L  +      HN I  +   LA  T+    GLN
Sbjct: 325 --LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 378

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 25/257 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL--YANNN 59
           LT+L  L L NN++  ++  L  L+ L  L +  N +    SDI   S L SL   +  N
Sbjct: 111 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFGN 165
Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           ++T L  L   LT L+  ++  N+++ +       L NL+S+   NNQI+ + + L  LT
Sbjct: 166 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 221
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  L L+ NQL +  +  +  L  L  +DL+ N+I+           + G+T + ELKL
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 272
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             N+I N+   L G+  L+ L+L+ N+L  ISP     L +L  L +  N ++ +   S 
Sbjct: 273 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 329
Query: 240 TFLPALEELFVSHNSLT 256
             L  L+ LF  +N ++
Sbjct: 330 --LTKLQRLFFYNNKVS 344

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 76  VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
           V   D +Q+T ++ D          + L+NL  I+  NNQ+T + + L  LTKL  + ++
Sbjct: 40  VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 98
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
           +NQ+ +  +  +  L  L  + L  N+I          + ++ +TN+  L+L  N I ++
Sbjct: 99  NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 149
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
             AL G+  L +L    N++  + P     L +L+ LDIS N ++ +   +K  L  LE 
Sbjct: 150 -SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 203
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
           L  ++N ++    D   L +L   D
Sbjct: 204 LIATNNQIS----DITPLGILTNLD 224

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
           GLT L WL L+ N+L++L  G    L++L  L +  NQL +LP  +    +QL  LY   
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           N++ SL  G+   LTKL+   ++ NQ+  +    F  L NL ++SL  NQ+ S+ + +  
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 117 GLTKLAYLYLSHNQL 131
            L KL  + L  NQ 
Sbjct: 177 RLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAY 123
           D   RGLTKL   N+D+NQ+  +    F +L  L ++ L NNQ+ S+       LT+L  
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 124 LYLSHNQLTEF---LLDDIRGLKRLR 146
           LYL  NQL      + D +  LK LR
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
           GLT L WL L+ N+L++L  G    L++L  L +  NQL +LP  +    +QL  LY   
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           N++ SL  G+   LTKL+   ++ NQ+  +    F  L NL ++SL  NQ+ S+ + +  
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 117 GLTKLAYLYLSHNQL 131
            L KL  + L  NQ 
Sbjct: 177 RLGKLQTITLFGNQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAY 123
           D   RGLTKL   N+D+NQ+  +    F +L  L ++ L NNQ+ S+       LT+L  
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 124 LYLSHNQLTEF---LLDDIRGLKRLR 146
           LYL  NQL      + D +  LK LR
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 128/275 (46%), Gaps = 32/275 (11%)
Query: 10  LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL----YANNNRITSL 64
           LN N + ++E G    L  L+ L +  N+L+ +P  + +F+ L +L     + N  +  L
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILL 120
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAY 123
           D + + L  L+   +  N +  +    F  L++L+ ++L+   +TS+ + +LS L  L  
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN--EGKN--------------- 166
           L L H  +        + L RL+ +++S+       T N   G N               
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 167 --QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD---LSHNKLRTISPDDFIGLDSL 221
              V+ +  +  L L +N I  ++G+++  H L RL    L   +L  + P  F GL+ L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
           ++L++S N LTTLEE+    +  LE L +  N L 
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL---GSLYAN 57
           LT L  L+LN+N+L++L  G    L  L+ L +  N+L+ALP  I +F QL     L  +
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLD 117
Query: 58  NNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
            N++ SL   +   LTKL   ++ +N++  + +  F  L +L  + L NNQ+  +   + 
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
             LT+L  L L +NQL          L++L+ + L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 101 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           + LQ+N+++S+ S +   LTKL  LYL+ N+L        + LK L T+ ++ NK+    
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGL 218
                      + N+ EL+L  N++++L   +   +  L+ L L +N+L+++    F  L
Sbjct: 102 I-----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
            SLK L + +N L  + E +   L  L+ L + +N L R+
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 42/284 (14%)
Query: 9   FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ-LGSLYANNNRITSLDG- 66
           F N+   K     L +  +++LL +   Q+E + +    ++  +  LY   N I  L   
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111
Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLY 125
           + + +  L V  ++ N ++ + R  F N   L ++S+ NN +  + + +    T L  L 
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN---------KINKFGTRNEGKNQVQGVTNI-- 174
           LS N+LT     D+  +  L   ++SYN          + +    +   N V+G  N+  
Sbjct: 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
             LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +  L             
Sbjct: 229 TILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------- 274
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
                      E L++S+N L  L+     +P L   DL+HN++
Sbjct: 275 -----------ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 2   LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
           LT+L +L L  N+L+SL  G    L+ L+ LV+ +NQL++LP  +    + L  LY  +N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
           ++ SL  G+   LT L   ++D NQ+  +    F  L  L  +SL +NQ+ S+ +     
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKR 144
           LT L +++L +N   +    DI  L R
Sbjct: 204 LTSLTHIWLLNNPW-DCACSDILYLSR 229

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 92  FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTV 148
            Q L N+  ++L  N++  + S+L  LT L YL L+ NQL      + D +  LK L  V
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
           +      N+  +  +G      +TN+  L L HN++++L  G    +  L+RLDL +N+L
Sbjct: 118 E------NQLQSLPDGV--FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
           +++    F  L  LK L ++ N L ++ +     L +L  +++ +N
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 135/312 (43%), Gaps = 62/312 (19%)
Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA--- 56
           GL+ L  L L+ N+   LE G    L+ L++L + Q  L+        F  L SL     
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 57  --NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE---FQNLH----NLDSISLQ--- 104
             NN +          + +  V ++ FN++  +  ++   FQ  H     L SI+LQ   
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 105 --------------NNQITSMNSSLSGL--------------TKLAYLYLSHNQ------ 130
                         N  IT+++ S +G               TK+  L LS++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 131 -LTEFLLDD---IRGLKR--LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
             T F   D    +GL+   ++T DLS +KI  F      K+     T++ +L L  NEI
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALL---KSVFSHFTDLEQLTLAQNEI 311
Query: 185 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
             +D  A  G+  L +L+LS N L +I    F  LD L++LD+S+N +  L + S   LP
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 244 ALEELFVSHNSL 255
            L+EL +  N L
Sbjct: 372 NLKELALDTNQL 383

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 38/253 (15%)
Query: 29  QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 88
           +++ + +N L  +P  I   ++L +L+ N  +I  ++   + L  L++  +  N I  + 
Sbjct: 47  KVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIE 104
Query: 89  RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
              F  L NL+++ L +N++T++ N +   L+KL  L+L +N +          +  LR 
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH---NEIENLDGALMGIHGLSRLDLSH 204
           +DL   ++ +    +EG    +G++N+  L L      EI NL   +     L  LDLS 
Sbjct: 165 LDLG--ELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSG 216
Query: 205 NKLRTISPDDFIGL------------------------DSLKMLDISHNLLTTLEETSKT 240
           N L  I P  F GL                         SL  ++++HN LT L     T
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 241 FLPALEELFVSHN 253
            L  LE + + HN
Sbjct: 277 PLHHLERIHLHHN 289

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIH 195
           DDI      + +DLS+N +    + +         + +  L L   EIE + D A  G+H
Sbjct: 28  DDIPS--STKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
            LS L L+ N +++ SP  F GL SL+ L      L +LE      L  L++L V+HN +
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 256 --TRLDKDFHGLPVLCKADLAHNNIKAINI 283
              +L   F  L  L   DL++N I+ I +
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIH 195
           DDI      + +DLS+N +    + +         + +  L L   EIE + D A  G+H
Sbjct: 23  DDIPS--STKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
            LS L L+ N +++ SP  F GL SL+ L      L +LE      L  L++L V+HN +
Sbjct: 76  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 135
Query: 256 --TRLDKDFHGLPVLCKADLAHNNIKAINI 283
              +L   F  L  L   DL++N I+ I +
Sbjct: 136 HSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 39/250 (15%)
Query: 65  DGLLRGLTKLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSMNS----SLSGLT 119
           DG  R L  L   ++  NQI ++     F  L++L SI   +NQI  +       L G T
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175
Query: 120 KLAYLYLSHNQL-TEFLLDDIRGLKRLR-----TVDLSYN--KINKFGTRNEGKNQVQGV 171
            L++  L+ N L +   +D  + +   R      +D+S N   ++  G  +   ++ Q  
Sbjct: 176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA- 233
Query: 172 TNIFELKLQHNEIENLDGALMGIH-----------GLSR-----LDLSHNKLRTISPDDF 215
              F L L H+    + GA  G H           GL+R     LDLSH  + +++   F
Sbjct: 234 ---FSLILAHH----IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286
Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLA 274
             L  LK+L++++N +  + + +   L  L+ L +S+N L  L   +F+GLP +   DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 275 HNNIKAINIQ 284
            N+I  I  Q
Sbjct: 347 KNHIAIIQDQ 356

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 54/272 (19%)
Query: 73  KLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
           K+Q+  + +N + T       Q    L  +    NQ+     +     KLA L L++NQ+
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK---------LQHN 182
           TE   +     +++  +  ++NK+             + + NIF+ K           +N
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL-------------KYIPNIFDAKSVSVXSAIDFSYN 412
Query: 183 EIENLDG---------ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
           EI ++DG            GI+ +S ++LS+N++     + F     L  +++  N LT 
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTE 471
Query: 234 LEETS---------KTFLPALEELFVSHNSLTRLDKDFHG--LPVLCKADLAHNNIKAIN 282
           + + S          T+L  L  + +  N LT+L  DF    LP L   DL++N+     
Sbjct: 472 IPKNSLKDENENFKNTYL--LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529
Query: 283 IQLALKTQCQIFGL--------NSTLRIYLEG 306
            Q    +  + FG+        N TLR + EG
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 42/284 (14%)
Query: 9   FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ-LGSLYANNNRITSLDG- 66
           F N+   K     L +  +++LL +   Q+E + +    ++  +  LY   N I  L   
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117
Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLY 125
           + + +  L V  ++ N ++ + R  F N   L ++S+ NN +  + + +    T L  L 
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN---------KINKFGTRNEGKNQVQGVTNI-- 174
           LS N+LT     D+  +  L   ++SYN          + +    +   N V+G  N+  
Sbjct: 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
             LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +  L             
Sbjct: 235 TILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------- 280
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
                      E L++S+N L  L+     +P L   DL+HN++
Sbjct: 281 -----------ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 2   LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-YAN-- 57
           LT+L +L L  N+L+SL  G    L+ L+ LV+ +NQL++LP  +  F +L +L Y N  
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDKLTNLTYLNLA 141
Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
           +N++ SL  G+   LT L   ++ +NQ+  +    F  L  L  + L  NQ+ S+ +   
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 116 SGLTKLAYLYLSHN 129
             LT L Y++L  N
Sbjct: 202 DRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 92  FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTV 148
            Q L N+  ++L  N++  + S+L  LT L YL L+ NQL      + D +  LK L  V
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
           +      N+  +  +G      +TN+  L L HN++++L  G    +  L+ LDLS+N+L
Sbjct: 118 E------NQLQSLPDGV--FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
           +++    F  L  LK L +  N L ++ +     L +L+ +++  N
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
           L G+  L  FN     I     +  Q L+NL  + L++NQIT + + L  LTK+  L LS
Sbjct: 46  LDGIATLSAFNTGVTTI-----EGIQYLNNLIGLELKDNQITDL-TPLKNLTKITELELS 99
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
            N L    +  I GL+ ++T+DL+  +I            + G++N+  L L  N+I N+
Sbjct: 100 GNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI 150
Query: 188 DGALMGIHGLSRLDLSHNKLRTISP 212
              L G+  L  L + +N++  ++P
Sbjct: 151 -SPLAGLTNLQYLSIGNNQVNDLTP 174

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
           ++    Q+T++   L   T +  L+LS N L  F L  +    RL  ++L   ++ K   
Sbjct: 15  VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                 QV G   +   L L HN++++L      +  L+ LD+S N+L ++      GL 
Sbjct: 71  ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
            L+ L +  N L TL     T  P LE+L +++N LT L     +GL  L    L  N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
             I            FG +     +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
           ++    Q+T++   L   T +  L+LS N L  F L  +    RL  ++L   ++ K   
Sbjct: 15  VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                 QV G   +   L L HN++++L      +  L+ LD+S N+L ++      GL 
Sbjct: 71  ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
            L+ L +  N L TL     T  P LE+L +++N LT L     +GL  L    L  N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
             I            FG +     +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
           ++    Q+T++   L   T +  L+LS N L  F L  +    RL  ++L   ++ K   
Sbjct: 15  VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                 QV G   +   L L HN++++L      +  L+ LD+S N+L ++      GL 
Sbjct: 71  ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
            L+ L +  N L TL     T  P LE+L +++N LT L     +GL  L    L  N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
             I            FG +     +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
           ++    Q+T++   L   T +  L+LS N L  F L  +    RL  ++L   ++ K   
Sbjct: 15  VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                 QV G   +   L L HN++++L      +  L+ LD+S N+L ++      GL 
Sbjct: 71  ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
            L+ L +  N L TL     T  P LE+L +++N LT L     +GL  L    L  N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
             I            FG +     +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1   GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
           GL +L +L L+N+   L++L  +       S L +L + +N++  + SD   FS LG L 
Sbjct: 356 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 413
Query: 56  ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
             +  +  +   L     RGL  +    + +N+   + R+ F  + +L  + L+   + +
Sbjct: 414 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 473
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
           ++SS S    L  L  L LS+N +     D + GL++L  +DL +N + +          
Sbjct: 474 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 533
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
           +   +G++++  L L+ N  + +   +   +  L  +DL  N L T+    F    SLK 
Sbjct: 534 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 593
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
           L++  NL+T++E+  K F PA         +LT LD  F+     C++
Sbjct: 594 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 632

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
           D   + L  L+  NM+ N I  ++ + F  L NL  +SL N+      +SL  LT   ++
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 381
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
            L+H          N++++   D    L  L  +DL  N+I +  T  E +    G+ NI
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 437
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
           FE+ L +N+   L   +   +  L RL L    L+ +  SP  F                
Sbjct: 438 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 497
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
                    GL+ L++LD+ HN L  L + +    P      +SH  +  L+ + F  +P
Sbjct: 498 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 557
Query: 267 VLCKADL 273
           V    DL
Sbjct: 558 VEVFKDL 564

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           T +  L L+HNQL      +     +L ++D+ +N I+K           Q +  +  L 
Sbjct: 30  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 84
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           LQHNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++ +  
Sbjct: 85  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 144
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
           ++  L  L+EL +S+N +  L     D      L K +L+ N IK
Sbjct: 145 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 189

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1   GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
           GL +L +L L+N+   L++L  +       S L +L + +N++  + SD   FS LG L 
Sbjct: 361 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 418
Query: 56  ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
             +  +  +   L     RGL  +    + +N+   + R+ F  + +L  + L+   + +
Sbjct: 419 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 478
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
           ++SS S    L  L  L LS+N +     D + GL++L  +DL +N + +          
Sbjct: 479 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 538
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
           +   +G++++  L L+ N  + +   +   +  L  +DL  N L T+    F    SLK 
Sbjct: 539 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 598
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
           L++  NL+T++E+  K F PA         +LT LD  F+     C++
Sbjct: 599 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 637

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
           D   + L  L+  NM+ N I  ++ + F  L NL  +SL N+      +SL  LT   ++
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 386
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
            L+H          N++++   D    L  L  +DL  N+I +  T  E +    G+ NI
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 442
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
           FE+ L +N+   L   +   +  L RL L    L+ +  SP  F                
Sbjct: 443 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 502
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
                    GL+ L++LD+ HN L  L + +    P      +SH  +  L+ + F  +P
Sbjct: 503 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 562
Query: 267 VLCKADL 273
           V    DL
Sbjct: 563 VEVFKDL 569

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           T +  L L+HNQL      +     +L ++D+ +N I+K           Q +  +  L 
Sbjct: 35  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 89
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           LQHNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++ +  
Sbjct: 90  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 149
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
           ++  L  L+EL +S+N +  L     D      L K +L+ N IK
Sbjct: 150 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 194

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N+LT L     +GL  L    L  N++  I            FG +    
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N+LT L     +GL  L    L  N++  I            FG +    
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 37  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 88
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 89  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 148
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N+LT L     +GL  L    L  N++  I            FG +    
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 200
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 201 AFLHGNPWLCN 211

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1   GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
           GL +L +L L+N+   L++L  +       S L +L + +N++  + SD   FS LG L 
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 408
Query: 56  ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
             +  +  +   L     RGL  +    + +N+   + R+ F  + +L  + L+   + +
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
           ++SS S    L  L  L LS+N +     D + GL++L  +DL +N + +          
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
           +   +G++++  L L+ N  + +   +   +  L  +DL  N L T+    F    SLK 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
           L++  NL+T++E+  K F PA         +LT LD  F+     C++
Sbjct: 589 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 627

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
           D   + L  L+  NM+ N I  ++ + F  L NL  +SL N+      +SL  LT   ++
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 376
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
            L+H          N++++   D    L  L  +DL  N+I +  T  E +    G+ NI
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 432
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
           FE+ L +N+   L   +   +  L RL L    L+ +  SP  F                
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
                    GL+ L++LD+ HN L  L + +    P      +SH  +  L+ + F  +P
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552
Query: 267 VLCKADL 273
           V    DL
Sbjct: 553 VEVFKDL 559

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           T +  L L+HNQL      +     +L ++D+ +N I+K           Q +  +  L 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 79
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           LQHNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++ +  
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
           ++  L  L+EL +S+N +  L     D      L K +L+ N IK
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N+LT L     +GL  L    L  N++  I            FG +    
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N+LT L     +GL  L    L  N++  I            FG +    
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN-QLTEFLLDDI 139
           N+I+ V    FQ+  NL  + L +N +  ++ ++ +GLT L  L LS N QL        
Sbjct: 41  NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS 198
           RGL  L T+ L     ++ G +  G    +G+  +  L LQ N ++ L D     +  L+
Sbjct: 101 RGLGHLHTLHL-----DRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
            L L  N++ ++    F GL SL  L +  N +  +   +   L  L  L++  N+L+ L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Query: 259 DKD 261
             +
Sbjct: 216 PAE 218

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 57/267 (21%)
Query: 20  GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSL---YANNNRITSL-------DGLL 68
           G    L  L+ L +E N ++ L P      S L  L    A   +  SL       D   
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 69  RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128
           + L  L+  NMD N I   + + F  L +L  +SL     +   +SL  LT   ++ L+H
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL-----SKTFTSLQTLTNETFVSLAH 380
Query: 129 ----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
                     N +++        L +LR +DL  N+I +  +  E +    G+ NIFE+ 
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR----GLRNIFEIY 436
Query: 179 LQHNE------------------------IENLD---GALMGIHGLSRLDLSHNKLRTIS 211
           L +N+                        ++N+D        +  L+ LDLS+N +  I+
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETS 238
            D   GL++L++LD  HN L  L + +
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRA 523

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
           ++ L+L+HN+LR + P +F     L +LD   N ++ LE      LP L+ L + HN L+
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 257 RL-DKDFHGLPVLCKADLAHNNIKAI 281
           ++ D+ F     L + DL  N+I  I
Sbjct: 87  QISDQTFVFCTNLTELDLMSNSIHKI 112

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 67  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 124
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI+ +   L+GLT
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N ++     D+R L  L+ +D+
Sbjct: 179 KLQNLYLSKNHIS-----DLRALAGLKNLDV 204

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
           L+LS N L  F L  +    RL  ++L   ++ K         QV G   +   L L HN
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
           ++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL     T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           P LE+L +++N LT L     +GL  L    L  N++  I            FG +    
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
            +L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 67  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 124
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI+ +   L+GLT
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N ++     D+R L  L+ +D+
Sbjct: 179 KLQNLYLSKNHIS-----DLRALAGLKNLDV 204

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           LTDL  L LN N+++ +   L +L+ L       NQ+  + + +   ++L SL   NN+I
Sbjct: 176 LTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGNNKI 233
Query: 62  TSLDGL---------------------LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100
           T L  L                     ++ LTKL+  N+  NQI+ +      NL  L+S
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISV--LNNLSQLNS 291
Query: 101 ISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
           + L NNQ+ + +   + GLT L  L+LS N +T     DIR L  L   D
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT-----DIRPLASLSKXD 336

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
           L+  NN+L SL       S LQ L +  NQL +LP+   L S+L  L+A NNR+TSL  L
Sbjct: 166 LWAYNNQLTSLPM---LPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPAL 219
Query: 68  LRG----------LTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNS 113
             G          LT L V   +  ++ MV  +   +L  L     S+S+  NQ+T +  
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE 278
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIR 140
           SL  L+    + L  N L+E  L  +R
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 65  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 122
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI+ +   L+GLT
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 176
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N ++     D+R L  L+ +D+
Sbjct: 177 KLQNLYLSKNHIS-----DLRALAGLKNLDV 202

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
           L G+T L  F      I     +  Q L+NL  + L++NQIT + + L  LTK+  L LS
Sbjct: 40  LDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELS 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
            N L    +  I GL+ ++T+DL+  +I            + G++N+  L L  N+I N+
Sbjct: 94  GNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISP 212
              L G+  L  L + + ++  ++P
Sbjct: 145 S-PLAGLTNLQYLSIGNAQVSDLTP 168

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 122 AYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           A L L++N+ T      I + L +LR ++ S NKI       EG    +G + + E+ L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI---EEG--AFEGASGVNEILLT 89
Query: 181 HNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
            N +EN+   +  G+  L  L L  N++  +  D FIGL S+++L +  N +TT+
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 87  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 144
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI+ +   L+GLT
Sbjct: 145 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 198
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N ++     D+R L  L+ +D+
Sbjct: 199 KLQNLYLSKNHIS-----DLRALAGLKNLDV 224

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 164
           NN +  +  +++ LT+L YLY++H  ++  + D +  +K L T+D SYN ++  GT    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--GTLPP- 143
Query: 165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHG-----LSRLDLSHNKLRTISPDDFIGLD 219
              +  + N+  +    N I    GA+   +G      + + +S N+L    P  F  L+
Sbjct: 144 --SISSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 220 SLKMLDISHNLL 231
            L  +D+S N+L
Sbjct: 199 -LAFVDLSRNML 209

>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein (Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution Length = 876

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 18/226 (7%)
Query: 24  TLSKLQLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81
           T  K+Q+     N LE  P+   +Q   +LG L   +N++  L+     + KL    +D+
Sbjct: 546 TGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNV-KLTDLKLDY 604
Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQIT-------SMNSSLSGLTKLAYLYL-SHNQLTE 133
           NQI  +  D       ++ +   +N++        + +  + G    +Y  + S  +   
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNIS 664
Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG---VTNIFELKLQHNEIENLDGA 190
              DD +G+    TV LSYN+I KF T             ++N     +  N ++  DG 
Sbjct: 665 CSXDDYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGN 723
Query: 191 LMGIHGLSRLDLSHNKLRTISPDDFIG--LDSLKMLDISHNLLTTL 234
               + L+ +DL  NKL ++S DDF    L  L   D+S+N  ++ 
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNXDVSYNCFSSF 768

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 20  GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF 77
           G      KL+ + +  NQ+  L P   Q    L SL    N+IT L   L  GL  LQ+ 
Sbjct: 50  GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 78  NMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
            ++ N+I  +R D FQ+LHNL+ +SL +N++ T    + S L  +  ++L+ N    F+ 
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN---PFIC 166
Query: 137 D 137
           D
Sbjct: 167 D 167

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 98  LDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           +  I L+ N I  +   + S   KL  + LS+NQ++E   D  +GL+ L ++ L  NKI 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 215
           +       K+  +G+ ++  L L  N+I  L   A   +H L+ L L  NKL+TI+   F
Sbjct: 94  EL-----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 216 IGLDSLKMLDISHN 229
             L +++ + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL SL  L +  N +T
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 233 TLEETSKTFLPALEELFVSHNSLT--RLD--KDFHGLPVLCKADLAHNNIKAINIQLALK 288
            L ++    L +L+ L ++ N +   R+D  +D H L +L    L  N ++ I       
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL---SLYDNKLQTI------- 143
Query: 289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324
            +     L +   ++L  NP +CD  ++ + D + T
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 2   LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
           LT L  L+L  N+L+SL  G    L+ L  L +  NQL++LP+ +    +QL  L  N N
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
           ++ SL DG+   LT+L+   +  NQ+  V    F  L +L  I L +N
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L WLFL+ N++K L      L KL+ L +E N +  +   + L  QL SLY  NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T                     IT++ R     L  LD++SL++NQI+ +   L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             LYLS N ++     D+R L  L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L WLFL+ N++K L      L KL+ L +E N +  +   + L  QL SLY  NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T                     IT++ R     L  LD++SL++NQI+ +   L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             LYLS N ++     D+R L  L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L WLFL+ N++K L      L KL+ L +E N +  +   + L  QL SLY  NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T                     IT++ R     L  LD++SL++NQI+ +   L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             LYLS N ++     D+R L  L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 20  GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVF 77
           G      KL+ + +  NQ+  L P   Q    L SL    N+IT L   L  GL  LQ+ 
Sbjct: 50  GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 78  NMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
            ++ N+I  +R D FQ+LHNL+ +SL +N++ T    + S L  +  ++L+ N    F+ 
Sbjct: 110 LLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN---PFIC 166
Query: 137 D 137
           D
Sbjct: 167 D 167

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 98  LDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           +  I L+ N I  +   + S   KL  + LS+NQ++E   D  +GL+ L ++ L  NKI 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 215
           +       K+  +G+ ++  L L  N+I  L   A   +H L+ L L  NKL+TI+   F
Sbjct: 94  EL-----PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 216 IGLDSLKMLDISHN 229
             L +++ + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL SL  L +  N +T
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 233 TLEETSKTFLPALEELFVSHNSLT--RLD--KDFHGLPVLCKADLAHNNIKAINIQLALK 288
            L ++    L +L+ L ++ N +   R+D  +D H L +L    L  N ++ I       
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL---SLYDNKLQTI------- 143
Query: 289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324
            +     L +   ++L  NP +CD  ++ + D + T
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 33/149 (22%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L WLFL+ N++K L           L + E N +  +   + L  QL SLY  NN+I
Sbjct: 84  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNGISDINGLVHL-PQLESLYLGNNKI 141
Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T                     IT++ R     L  LD++SL++NQI+ +   L+GLTKL
Sbjct: 142 TD--------------------ITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 175
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             LYLS N ++     D+R L  L+ +D+
Sbjct: 176 QNLYLSKNHIS-----DLRALAGLKNLDV 199

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L +L WLFL+ N++K L      L KL+ L +E N +  +   + L  QL SLY  NN+I
Sbjct: 86  LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 143
Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T +  L R LTKL                        D++SL++NQI+ +   L+GLTKL
Sbjct: 144 TDITVLSR-LTKL------------------------DTLSLEDNQISDI-VPLAGLTKL 177
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             LYLS N ++     D+R L  L+ +D+
Sbjct: 178 QNLYLSKNHIS-----DLRALAGLKNLDV 201

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 19/220 (8%)
Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM---VRRDEFQ 93
           L ++P+ I   S    L   +N++ SL  G+   LT+L   ++  N ++      + +F 
Sbjct: 19  LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDL 150
              +L  + L  N + +M+S+  GL +L +L   H+   Q++EF +     L+ L  +D+
Sbjct: 77  TT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDI 133
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLR 208
           S+       TR        G++++  LK+  N  +   L      +  L+ LDLS  +L 
Sbjct: 134 SHTH-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
            +SP  F  L SL++L++SHN   +L+      L +L+ L
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 8   LFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNRITSL 64
           L+L++N L  ++    T L+ L+ L +  N QL ++ P+      +L +L+ +   +  L
Sbjct: 60  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 65  -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLA 122
             GL RGL  LQ   +  N +  +  D F++L NL  + L  N+I+S+   +  GL  L 
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
            L L  N++        R L RL T+ L  N ++   T
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 22  LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 79
           +G  +  Q + +  N++  +P+   +    L  L+ ++N +  +D     GL  L+  ++
Sbjct: 27  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 80  DFN-QITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 137
             N Q+  V    F  L  L ++ L    +  +   L  GL  L YLYL  N L     D
Sbjct: 87  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
             R L  L  + L  N+I+    R                            A  G+H L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPER----------------------------AFRGLHSL 178
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
            RL L  N++  + P  F  L  L  L +  N L+ L   +   L AL+ L ++ N   
Sbjct: 179 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 237

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 8   LFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNRITSL 64
           L+L++N L  ++    T L+ L+ L +  N QL ++ P+      +L +L+ +   +  L
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 65  -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLA 122
             GL RGL  LQ   +  N +  +  D F++L NL  + L  N+I+S+   +  GL  L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
            L L  N++        R L RL T+ L  N ++   T
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 22  LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 79
           +G  +  Q + +  N++  +P+   +    L  L+ ++N +  +D     GL  L+  ++
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 80  DFN-QITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 137
             N Q+  V    F  L  L ++ L    +  +   L  GL  L YLYL  N L     D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
             R L  L  + L  N+I+    R                            A  G+H L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPER----------------------------AFRGLHSL 179
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
            RL L  N++  + P  F  L  L  L +  N L+ L   +   L AL+ L ++ N   
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 177 LKLQHNEIENLDGALMG--IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
           L L HN +  L        +  L  L LSHN L  IS + F+ + +L+ LD+S N L TL
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
           +E   + L ALE L + +N +  +D++ F  +  L K  L+ N I    ++L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of The Listeria Monocytogenes Inlb Internalin Domain Length = 289

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 65  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 122
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI  +   L+ LT
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQIRRI-VPLARLT 176
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N +++  L  +RGLK L  ++L
Sbjct: 177 KLQNLYLSKNHISD--LRALRGLKNLDVLEL 205

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 97  NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
           +L  + L  N + +M+S+  GL +L +L   H+   Q++EF +     L+ L  +D+S+ 
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 455
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
                 TR        G++++  LK+  N  +   L      +  L+ LDLS  +L  +S
Sbjct: 456 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
           P  F  L SL++L++SHN   +L+      L +L+ L  S N
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 97  NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
           +L  + L  N + +M+S+  GL +L +L   H+   Q++EF +     L+ L  +D+S+ 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 431
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
                 TR        G++++  LK+  N  +   L      +  L+ LDLS  +L  +S
Sbjct: 432 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
           P  F  L SL++L++SHN   +L+      L +L+ L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 8   LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL- 64
           L L +N+L+SL  G    L++L  L + QNQ+++LP  +    ++L  LY + N++ SL 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 65  DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
           +G+   LT+L+   +D NQ+  V    F  L +L  I L  N
Sbjct: 93  NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
           L ++P+ I   +Q+  LY  +NRIT L+ G+   LT+L   ++D NQ+T++    F  L 
Sbjct: 21  LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 97  NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145
            L  +SL +NQ+ S+   +   L  L +++L +N   +    DI  L R 
Sbjct: 79  QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW-DCACSDILYLSRW 127

>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The Listeria Monocytogenes Inlb Internalin Domain Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L ++  LFLN N+L  ++  L  L  L  L +++N+++ L S ++   +L SL   +N I
Sbjct: 62  LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 119
Query: 62  TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           + ++GL  L  L  L + N     IT++ R     L  LD++SL++NQI+ +   L+ LT
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLACLT 173
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           KL  LYLS N ++     D+R L  L+ +D+
Sbjct: 174 KLQNLYLSKNHIS-----DLRALCGLKNLDV 199

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 23/125 (18%)
Query: 8   LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
           L+L++N++  LE G   +L  L+ L +  NQL ALP                       G
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----------------------G 82
Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 126
           +   LT+L V ++  NQ+T++    F  L +L  + +  N++T +   +  LT L +L L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 127 SHNQL 131
             NQL
Sbjct: 143 DQNQL 147

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 97  NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
           +L  + L  N + +M+S+  GL +L +L   H+   Q++EF +     L+ L  +D+S+ 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 431
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
                 TR        G++++  LK+  N  +   L      +  L+ LDLS  +L  +S
Sbjct: 432 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN----SLTRLD 259
           P  F  L SL++L+++ N L ++ +     L +L+++++  N    S  R+D
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 95  LHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDD--IRG-LKRLRTVDL 150
           L  +  I+++N+++  +  S S  L  L +L LS N + E  L +   +G    L+T+ L
Sbjct: 335 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 394
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
           S N +       E    +  + N+  L +  N    +  +      +  L+LS   +R +
Sbjct: 395 SQNHLRSMQKTGE---ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 451
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
                    +L++LD+S+N L +       FLP L+EL++S N L  L  D    PVL  
Sbjct: 452 KT---CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLV 503
Query: 271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
             +A N +K++   +  +       L S  +I+L  NP  C
Sbjct: 504 MKIASNQLKSVPDGIFDR-------LTSLQKIWLHTNPWDC 537

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 95  LHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDD--IRG-LKRLRTVDL 150
           L  +  I+++N+++  +  S S  L  L +L LS N + E  L +   +G    L+T+ L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
           S N +       E    +  + N+  L +  N    +  +      +  L+LS   +R +
Sbjct: 369 SQNHLRSMQKTGE---ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
                    +L++LD+S+N L +       FLP L+EL++S N L  L  D    PVL  
Sbjct: 426 KT---CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLV 477
Query: 271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
             ++ N +K++   +  +       L S  +I+L  NP  C
Sbjct: 478 MKISRNQLKSVPDGIFDR-------LTSLQKIWLHTNPWDC 511

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
           L ++P+ I   +Q+  LY  +N+IT L+ G+   LT+L   ++D NQ+T++    F  L 
Sbjct: 21  LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 97  NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT----VDLS 151
            L  +SL +NQ+ S+   +   L  L +++L +N   +    DI  L R  +    +   
Sbjct: 79  QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSRWISQHPGLVFG 137
Query: 152 YNKINKFGTRNEGKN-QVQGVT 172
           Y  ++    R  G N  V+ VT
Sbjct: 138 YLNLDPDSARCSGTNTPVRAVT 159

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 121/311 (38%), Gaps = 72/311 (23%)
Query: 17  SLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 75
           ++   LG+LSKL+ L +  N LE  +P ++                         +  L+
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-----------------------VKTLE 469
Query: 76  VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEF 134
              +DFN +T        N  NL+ ISL NN++T       G L  LA L LS+N  +  
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 135 LLDDIRGLKRLRTVDLSYNKINKFGT-------------------------RNEG-KNQV 168
           +  ++   + L  +DL+ N  N  GT                         +N+G K + 
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFN--GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 169 QGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLSHNKLRTI 210
            G  N+ E          +L      N+   + G H          +  LD+S+N L   
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL-TRLDKDFHGLPVLC 269
            P +   +  L +L++ HN ++         L  L  L +S N L  R+ +    L +L 
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 270 KADLAHNNIKA 280
           + DL++NN+  
Sbjct: 708 EIDLSNNNLSG 718

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 72/311 (23%)
Query: 17  SLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 75
           ++   LG+LSKL+ L +  N LE  +P ++                         +  L+
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-----------------------VKTLE 466
Query: 76  VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEF 134
              +DFN +T        N  NL+ ISL NN++T  +   +  L  LA L LS+N  +  
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 135 LLDDIRGLKRLRTVDLSYNKINKFGT-------------------------RNEG-KNQV 168
           +  ++   + L  +DL+ N  N  GT                         +N+G K + 
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFN--GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 169 QGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLSHNKLRTI 210
            G  N+ E          +L      N+   + G H          +  LD+S+N L   
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL-TRLDKDFHGLPVLC 269
            P +   +  L +L++ HN ++         L  L  L +S N L  R+ +    L +L 
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 270 KADLAHNNIKA 280
           + DL++NN+  
Sbjct: 705 EIDLSNNNLSG 715

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
           L ++P+ I   +Q+  LY  +N+IT L+ G+   LT+L   ++D NQ+T++    F  L 
Sbjct: 29  LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 97  NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT----VDLS 151
            L  +SL +NQ+ S+   +   L  L +++L +N   +    DI  L R  +    +   
Sbjct: 87  QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSRWISQHPGLVFG 145
Query: 152 YNKINKFGTRNEGKN-QVQGVT 172
           Y  ++    R  G N  V+ VT
Sbjct: 146 YLNLDPDSARCSGTNTPVRAVT 167

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
           L+LN N L  L  ++  LS L++L +  N+L +LP+++    QL   Y  +N +T+L   
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 68  LRGLTKLQVFNMDFNQI 84
              L  LQ   ++ N +
Sbjct: 312 FGNLCNLQFLGVEGNPL 328

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-54
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-40
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-43
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-45
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-40
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-41
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-40
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-40
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-30
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-30
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-30
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
3ghp_A	227	Cellulosomal scaffoldin adaptor protein B; linker	2e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  186 bits (473), Expect = 3e-54
 Identities = 73/334 (21%), Positives = 145/334 (43%), Gaps = 20/334 (5%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
           T+   L L  NR+K+L + +  +   L+ L + +N + A+          L +L   +NR
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
           +  +  G+  GL+ L   ++  N+I ++    FQ+L+NL S+ + +N +    + + SGL
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
             L  L L    LT    + +  L  L  + L +  IN            + +  +  L+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLE 206

Query: 179 LQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           + H   ++ +    +    L+ L ++H  L  +       L  L+ L++S+N ++T+E +
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL 296
               L  L+E+ +    L  ++   F GL  L   +++ N +  +        +  +F  
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL--------EESVFHS 318

Query: 297 NSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNT 329
              L  + L+ NP+ CD  +  V      +N N 
Sbjct: 319 VGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  180 bits (459), Expect = 3e-52
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 11/284 (3%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
               L  L LN N + ++E G    L  L+ L +  N+L+ +P  +    S L  L  + 
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
           N+I  L D + + L  L+   +  N +  +    F  L++L+ ++L+   +TS+ + +LS
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
            L  L  L L H  +        + L RL+ +++S+       T N          N+  
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-----CLYGLNLTS 228

Query: 177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           L + H  +  +   A+  +  L  L+LS+N + TI       L  L+ + +    L  +E
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
             +   L  L  L VS N LT L++  FH +  L    L  N +
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  156 bits (395), Expect = 6e-43
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 11/250 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
            +  A+P  I   ++   L    NRI +L+         L+   ++ N ++ V    F N
Sbjct: 21  KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           L NL ++ L++N++  +     +GL+ L  L +S N++   L    + L  L+++++  N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
            +              G+ ++ +L L+   + ++   AL  +HGL  L L H  +  I  
Sbjct: 139 DLVYISH-----RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
             F  L  LK+L+ISH         +  +   L  L ++H +LT +       L  L   
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 272 DLAHNNIKAI 281
           +L++N I  I
Sbjct: 254 NLSYNPISTI 263

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 2e-23
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVI-EQNQLEALPSDIQLFSQLGSLYANN 58
            L  L  L L +  + ++       L +L++L I     L+ +  +      L SL   +
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
             +T++    +R L  L+  N+ +N I+ +       L  L  I L   Q+  +   +  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           GL  L  L +S NQLT         +  L T+ L  N + 
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  178 bits (453), Expect = 5e-52
 Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 30/329 (9%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
           L +   +   N+ ++ L    L +  +++LL +   Q+E + +        +  LY   N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 60  RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSG 117
            I  L   + + +  L V  ++ N ++ + R  F N   L ++S+ NN +  +       
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE------GKNQVQGV 171
            T L  L LS N+LT     D+  +  L   ++SYN ++               N +  V
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220

Query: 172 -----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
                  +  LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +  L+ L I
Sbjct: 221 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286
           S+N L  L    +  +P L+ L +SHN L  ++++      L    L HN+I  + +   
Sbjct: 280 SNNRLVALNLYGQP-IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 337

Query: 287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
                     ++   + L  N   C+   
Sbjct: 338 ---------HHTLKNLTLSHNDWDCNSLR 357

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (333), Expect = 7e-35
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 20/230 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
               L  L ++NN L+ +E       + LQ L +  N+L  +     L   L     + N
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN 196

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
            +++L         ++  +   N I +VR      L  L    LQ+N +T   + L    
Sbjct: 197 LLSTLAIP----IAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT-AWLLNYP 248

Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
            L  + LS+N+L + +      ++RL  + +S N++             Q +  +  L L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL------YGQPIPTLKVLDL 302

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
            HN + +++        L  L L HN + T+         +LK L +SHN
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 1e-29
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-L 115
                  +D  L+        ++D     +    E   L+N   ++ +N+ +  + ++ L
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
               ++  L L+  Q+ E           ++ + + +N I          +  Q V  + 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLT 120

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
            L L+ N++ +L  G       L+ L +S+N L  I  D F    SL+ L +S N LT +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
           + +    +P+L    VS+N L+ L         + + D +HN+I  +
Sbjct: 181 DLSL---IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 6e-27
 Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 30/224 (13%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL------------- 47
             T L  L L++NRL  +   L  +  L    +  N L  L   I +             
Sbjct: 163 ATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220

Query: 48  ----FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103
                 +L  L   +N +T     L     L   ++ +N++  +    F  +  L+ + +
Sbjct: 221 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
            NN++ ++N     +  L  L LSHN L   +  +     RL  + L +N I        
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL----- 333

Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
              ++     +  L L HN+ +  +        ++R  +     
Sbjct: 334 ---KLSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 8e-26
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 101 ISLQNNQITSMNSSLSG------LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
               +  I      +        L     +   ++ + +     +   +++  ++L+  +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPD 213
           I +                I +L +  N I  L       +  L+ L L  N L ++   
Sbjct: 81  IEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
            F     L  L +S+N L  +E+ +     +L+ L +S N LT +  D   +P L  A++
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANV 193

Query: 274 AHNNIKAINIQLALKT 289
           ++N +  + I +A++ 
Sbjct: 194 SYNLLSTLAIPIAVEE 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  170 bits (432), Expect = 2e-47
 Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 30/329 (9%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
           L +   +   N+ ++ L    L +  +++LL +   Q+E + +        +  LY   N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 60  RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSG 117
            I  L   + + +  L V  ++ N ++ + R  F N   L ++S+ NN +  +       
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE------GKNQVQGV 171
            T L  L LS N+LT     D+  +  L   ++SYN ++               N +  V
Sbjct: 170 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226

Query: 172 -----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
                  +  LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +  L+ L I
Sbjct: 227 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286
           S+N L  L    +  +P L+ L +SHN L  ++++      L    L HN+I  + +   
Sbjct: 286 SNNRLVALNLYGQP-IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 343

Query: 287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
                     ++   + L  N   C+   
Sbjct: 344 ---------HHTLKNLTLSHNDWDCNSLR 363

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  151 bits (383), Expect = 1e-40
 Identities = 70/320 (21%), Positives = 126/320 (39%), Gaps = 28/320 (8%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
             D++      +     E    TL+  +++  + + +  LP+ +   F Q+  L  N+ +
Sbjct: 29  FYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 61  ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
           I  +D         +Q   M FN I  +    FQN+  L  + L+ N ++S+        
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR--------NEGKNQVQG 170
            KL  L +S+N L     D  +    L+ + LS N++              N   N +  
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206

Query: 171 V---TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
           +     + EL   HN I  + G +     L+ L L HN L   +    +    L  +D+S
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTA--WLLNYPGLVEVDLS 262

Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL 287
           +N L  +       +  LE L++S+N L  L+     +P L   DL+HN++  +      
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-- 320

Query: 288 KTQCQIFGLNSTLRIYLEGN 307
                    +    +YL+ N
Sbjct: 321 ------PQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 8e-27
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 14/234 (5%)

Query: 50  QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 109
           Q  ++         +D  L+        ++D     +    E   L+N   ++ +N+ + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 110 SM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
            +  + L    ++  L L+  Q+ E           ++ + + +N I          +  
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVF 119

Query: 169 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
           Q V  +  L L+ N++ +L  G       L+ L +S+N L  I  D F    SL+ L +S
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            N LT ++ +    +P+L    VS+N L+ L         + + D +HN+I  +
Sbjct: 180 SNRLTHVDLSL---IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV 226

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (257), Expect = 6e-24
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 30/224 (13%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL------------- 47
             T L  L L++NRL  ++  L  +  L    +  N L  L   I +             
Sbjct: 169 ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226

Query: 48  ----FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103
                 +L  L   +N +T    L      L   ++ +N++  +    F  +  L+ + +
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
            NN++ ++N     +  L  L LSHN L   +  +     RL  + L +N I        
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL----- 339

Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
              ++     +  L L HN+ +  +        ++R  +     
Sbjct: 340 ---KLSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 1e-20
 Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
           +   ++S+L        +++       +   +   L   + V    + + K         
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-----AA 69

Query: 167 QVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
            +     +  L L   +IE +D  A    H + +L +  N +R + P  F  +  L +L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
           +  N L++L        P L  L +S+N+L R++ D F     L    L+ N +  +++ 
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189

Query: 285 L 285
           L
Sbjct: 190 L 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 50/300 (16%), Positives = 96/300 (32%), Gaps = 7/300 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            +  L  L+++NNRL +L      +  L++L +  N L  +  +   F +L +LY ++N 
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I +L   L     L+   +  N              N+   ++ +            L  
Sbjct: 336 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQ--LEH 389

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
                 S     + LL  I     +  V  +  + +   T N  ++    +T    + LQ
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            NE    +   +        +    + + +         +L+   +  + L    +    
Sbjct: 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNK 509

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
               L+E        T+  +           DL   NI A+  QL  K   Q      T 
Sbjct: 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENI-ALEKQLDNKRAKQAELRQETS 568

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  164 bits (416), Expect = 3e-47
 Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 21/265 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            L +L+ L L NN++  +  G    L KL+ L + +NQL+ LP    +   L  L  + N
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHEN 131

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
            IT +   +  GL ++ V  +  N +    +    FQ +  L  I + +  IT++   L 
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 190

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
               L  L+L  N++T+     ++GL  L  + LS+N I+           +    ++ E
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-----DNGSLANTPHLRE 244

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------GLDSLKMLDISHNL 230
           L L +N++  + G L     +  + L +N +  I  +DF          S   + +  N 
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 231 LTTLEETSKTF--LPALEELFVSHN 253
           +   E    TF  +     + + + 
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  160 bits (406), Expect = 8e-46
 Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 11/275 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             LE +P D+        L   NN+IT + DG  + L  L    +  N+I+ +    F  
Sbjct: 41  LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
           L  L+ + L  NQ+  +   +     L  L +  N++T+       GL ++  V+L  N 
Sbjct: 99  LVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
           +   G  N      QG+  +  +++    I  +   L     L+ L L  NK+  +    
Sbjct: 157 LKSSGIEN---GAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAAS 211

Query: 215 FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLA 274
             GL++L  L +S N ++ ++  S    P L EL +++N L ++         +    L 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271

Query: 275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
           +NNI AI                S   + L  NPV
Sbjct: 272 NNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  149 bits (378), Expect = 1e-41
 Identities = 51/294 (17%), Positives = 110/294 (37%), Gaps = 46/294 (15%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
            D   L L NN++  + +G    L  L  L++  N++  +                    
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------------------- 92

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTK 120
               G    L KL+   +  NQ+  +     + L  L    +  N+IT +     +GL +
Sbjct: 93  ---PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQ 146

Query: 121 LAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           +  + L  N L    +++   +G+K+L  + ++   I                 ++ EL 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--------PQGLPPSLTELH 198

Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           L  N+I  +   +L G++ L++L LS N +  +          L+ L +++N L  +   
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-------FHGLPVLCKADLAHNNIKAINIQ 284
                  ++ +++ +N+++ +  +                  L  N ++   IQ
Sbjct: 259 LAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 7e-31
 Identities = 44/215 (20%), Positives = 95/215 (44%), Gaps = 14/215 (6%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---N 57
              L  L ++ N +  + +     L+++ ++ +  N L++   +   F  +  L      
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
           +  IT++  GL   LT+L   ++D N+IT V     + L+NL  + L  N I+++ N SL
Sbjct: 180 DTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN-EGKNQVQGVTNI 174
           +    L  L+L++N+L + +   +   K ++ V L  N I+  G+ +           + 
Sbjct: 237 ANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 175 FELKLQHNEIENLD---GALMGIHGLSRLDLSHNK 206
             + L  N ++  +        ++  + + L + K
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 14/165 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
           G+  L+++ + +  + ++    G    L  L ++ N++  + +   +  + L  L  + N
Sbjct: 169 GMKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS---- 114
            I+++ +G L     L+  +++ N++  V      +   +  + L NN I+++ S+    
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 115 ---LSGLTKLAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNK 154
               +     + + L  N +  + +     R +     V L   K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (430), Expect = 4e-47
 Identities = 70/345 (20%), Positives = 137/345 (39%), Gaps = 23/345 (6%)

Query: 5   LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 63
           +  + L  +   ++        S LQ L +    L  LPS +   S L  L  + N+  +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 64  LD-GLLRGLTKLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGL 118
           L          L   ++  N     +     +NL NL  + L ++ I +    N  L  L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           + L  L LS+N+      +  +   +L  +DL++ ++       + ++  Q +  +  L 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL----KVKDAQSPFQNLHLLKVLN 431

Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTTL 234
           L H+ ++   +    G+  L  L+L  N          +    L  L++L +S   L+++
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
           ++ + T L  +  + +SHN LT    +    L  +   +LA N+I  I   L       +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-------L 543

Query: 294 FGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQ 338
             L+    I L  NP+ C  S    ++  +      +   +T+C+
Sbjct: 544 PILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE 588

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (405), Expect = 1e-43
 Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-----Y 55
             + L  L L    L  L   L  LS L+ LV+  N+ E L       S   SL      
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIK 333

Query: 56  ANNNRITSLDGLLRGLTKLQVFNMDFNQITMV--RRDEFQNLHNLDSISLQNNQITSM-N 112
            N  R+    G L  L  L+  ++  + I        + +NL +L S++L  N+  S+  
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
            +     +L  L L+  +L         + L  L+ ++LS++ ++        +    G+
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-----EQLFDGL 448

Query: 172 TNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
             +  L LQ N     +     +L  +  L  L LS   L +I    F  L  +  +D+S
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
           HN LT+    + + L  +  L ++ N ++ +       L      +L  N +
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  156 bits (396), Expect = 3e-42
 Identities = 64/297 (21%), Positives = 111/297 (37%), Gaps = 17/297 (5%)

Query: 1   GLTDLNWLFL--NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN- 57
            L     L L  N N +  +E      +  Q L     Q   +       S + SL+   
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 58  --NNRITSLDGLL---RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
             +     +   +        ++  N+  +    +  + F     L  + L    ++ + 
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
           S L GL+ L  L LS N+              L  + +  N          G   ++ + 
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL----ELGTGCLENLE 350

Query: 173 NIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
           N+ EL L H++IE  D     L  +  L  L+LS+N+  ++  + F     L++LD++  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 230 LLTTLEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
            L   +  S    L  L+ L +SH+ L    +  F GLP L   +L  N+    NIQ
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 1e-40
 Identities = 63/317 (19%), Positives = 114/317 (35%), Gaps = 19/317 (5%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
               L+ L L  N L  + E  L     L+ L   Q  + ++    +     L SLY  +
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL--QNNQITSMNSSL 115
           N I+S+         KL+V +   N I  + +++  +L    ++SL    N I  +    
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRG--LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
                   L     Q    +   ++   ++ L                +    +     +
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI---SPAVFEGLCEMS 255

Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           +  + LQ +   N+         GL  LDL+   L  + P   +GL +LK L +S N   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFE 314

Query: 233 TLEETSKTFLPALEELFVSHNSL--TRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
            L + S +  P+L  L +  N+            L  L + DL+H++I+  +        
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC-----CN 369

Query: 291 CQIFGLNSTLRIYLEGN 307
            Q+  L+    + L  N
Sbjct: 370 LQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (380), Expect = 3e-40
 Identities = 52/308 (16%), Positives = 108/308 (35%), Gaps = 31/308 (10%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
                 L  + N L ++       L  L  L + + Q+  +  D  Q   +L +L    N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSG 117
            +  + +  L G   L+        I+ +      N   L+S+ L +N I+S+       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR--TVDLSYNKI-------------------- 155
             KL  L   +N +     +D+  L++    +++L+ N I                    
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG---LSRLDLSHNKLRTISP 212
            +         +   + +++    +  + E++  A+        +  ++L  +    IS 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
           + F     L+ LD++   L+ L       L  L++L +S N    L +      P L   
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 272 DLAHNNIK 279
            +  N  +
Sbjct: 331 SIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (357), Expect = 5e-37
 Identities = 58/302 (19%), Positives = 119/302 (39%), Gaps = 20/302 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLG--SLYA 56
               L  L+L +N + S++  +     KL++L  + N +  L   D+    Q    SL  
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMV--RRDEFQNLHNLDSISLQNNQITSMNSS 114
           N N I  ++         Q  N    Q  +V  +  +   + +L   + ++     ++ +
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 115 L---SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
           +        +  + L  +       +       L+ +DL+   +++        + + G+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL------PSGLVGL 300

Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHN 229
           + + +L L  N+ ENL   +      L+ L +  N  R  +       L++L+ LD+SH+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 230 LLTTLEETSKTF--LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLA 286
            + T +  +     L  L+ L +S+N    L  + F   P L   DLA   +K  + Q  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 287 LK 288
            +
Sbjct: 421 FQ 422

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (325), Expect = 1e-32
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 16/243 (6%)

Query: 1   GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA-- 56
               L  L +  N  +     G L  L  L+ L +  + +E           L  L +  
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 57  -NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMN- 112
            + N   SL     +   +L++ ++ F ++ +      FQNLH L  ++L ++ +   + 
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 113 SSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
               GL  L +L L  N   +      + ++ L RL  + LS+  ++        ++   
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-----QHAFT 497

Query: 170 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
            +  +  + L HN + +     +       L+L+ N +  I P     L   + +++  N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 230 LLT 232
            L 
Sbjct: 558 PLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (317), Expect = 1e-31
 Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 18/257 (7%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L  +P    L +    L  + N + ++       L  L   ++   QI  +  D FQ+
Sbjct: 22  LGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
            H LD++ L  N +  M   +LSG   L +L+     ++      +   K L ++ L  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSR--LDLSHNKLRTI 210
            I+          +      +  L  Q+N I  L    +  +   +   L+L+ N +  I
Sbjct: 140 HISSI-----KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 211 SPDDFIGLDSLKMLDISHN--LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV 267
            P  F      + L+      LL   +    + + +L            +    F GL  
Sbjct: 195 EPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 268 --LCKADLAHNNIKAIN 282
             +   +L  +    I+
Sbjct: 254 MSVESINLQKHYFFNIS 270

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 2e-23
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           + + +N  +  +  +L   T+   L  S N L          L  L  +DL+  +I    
Sbjct: 16  TYNCENLGLNEIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI---- 69

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 218
                ++  Q    +  L L  N +  + + AL G   L  L      + +I        
Sbjct: 70  -YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKA--DLAH 275
            +L+ L +  N +++++         L+ L   +N++  L K D   L        +L  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 276 NNIKAI 281
           N+I  I
Sbjct: 189 NDIAGI 194

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  162 bits (411), Expect = 2e-45
 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L  +P  I   S    L    N I  +     R L  L+V  +  N I  +    F  
Sbjct: 64  RGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS-Y 152
           L +L+++ L +N +T + S +   L+KL  L+L +N +          +  L  +DL   
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
            K+             +G+ N+  L L    I+++   L  + GL  L++S N    I P
Sbjct: 182 KKLEYISE-----GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP 235

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
             F GL SLK L + ++ ++ +E  +   L +L EL ++HN+L+ L  D F  L  L + 
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 272 DLAHN 276
            L HN
Sbjct: 296 HLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  159 bits (403), Expect = 2e-44
 Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 51/378 (13%)

Query: 48  FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
            +Q   +      ++ +  G+      L   N+  N I M++ D F++LH+L+ + L  N
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
            I  +   + +GL  L  L L  N LT         L +LR + L  N I    +     
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY---- 165

Query: 166 NQVQGVTNIFELKLQH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
                V ++  L L    ++E + +GA  G+  L  L+L    ++ +   +   L  L+ 
Sbjct: 166 -AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEE 222

Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
           L++S N    +   S   L +L++L+V ++ ++ ++++ F GL  L + +LAHNN+ ++ 
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL- 281

Query: 283 IQLALKTQCQIF-GLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGET------ 335
                     +F  L   + ++L  NP  CD  +  +   +                   
Sbjct: 282 -------PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMH 334

Query: 336 --------------ICQPDSNETSTTTTTTTTTTP-------EPTPAPTSTTTQRSTTST 374
                          C       +      +            P  +        +  S 
Sbjct: 335 MRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSH 394

Query: 375 TTQTPTTPIQEEYTETIT 392
            ++ P   +  + T   +
Sbjct: 395 ASRHPRISVLNDGTLNFS 412

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  156 bits (395), Expect = 3e-43
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 39/260 (15%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
           ++  +L L  N ++ ++      L  L++L + +N +  +      F+ L S   L   +
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFD 132

Query: 59  NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN-NQITSM-NSSL 115
           N +T +  G    L+KL+   +  N I  +    F  + +L  + L    ++  +   + 
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
            GL  L YL L    + +  + ++  L  L  +++S N   +                  
Sbjct: 193 EGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR---------------- 234

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
                        G+  G+  L +L + ++++  I  + F GL SL  L+++HN L++L 
Sbjct: 235 ------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

Query: 236 ETSKTFLPALEELFVSHNSL 255
               T L  L EL + HN  
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  143 bits (362), Expect = 2e-38
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 33/233 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
            L  L  L L  N ++ +E G    L+ L  L +  N L  +PS   +  S+L  L+  N
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 59  NRITSL-DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
           N I S+       +  L   ++ +  ++  +    F+ L NL  ++L    I  M  +L+
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLT 215

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
            L  L  L +S N   E       GL  L+ + +  ++++                    
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE----------------- 258

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
                        A  G+  L  L+L+HN L ++  D F  L  L  L + HN
Sbjct: 259 -----------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  161 bits (408), Expect = 4e-45
 Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 12/245 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L  +P  I   +    L  + N+I  +     + L  L++  +  N I  +    F  
Sbjct: 53  KNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS-Y 152
           L NL+++ L +N++T++ + +   L+KL  L+L +N +          +  LR +DL   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
            +++            +G++N+  L L    +  +   L  +  L  LDLS N L  I P
Sbjct: 171 KRLSYISE-----GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRP 224

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
             F GL  L+ L +  + +  +E  +   L +L E+ ++HN+LT L  D F  L  L + 
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 272 DLAHN 276
            L HN
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  155 bits (393), Expect = 6e-43
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 24/271 (8%)

Query: 48  FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
            +Q   +      +  + DG+      L   N+  NQI +++ + F++L +L+ + L  N
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
            I ++   + +GL  L  L L  N+LT         L +L+ + L  N I    +     
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--- 155

Query: 166 NQVQGVTNIFELKLQH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
                + ++  L L     +  + +GA  G+  L  L+L+   LR I   +   L  L  
Sbjct: 156 --FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDE 211

Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
           LD+S N L+ +   S   L  L++L++  + +  ++++ F  L  L + +LAHNN+  + 
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL- 270

Query: 283 IQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
                     +F  L+   RI+L  NP  C+
Sbjct: 271 -------PHDLFTPLHHLERIHLHHNPWNCN 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  152 bits (386), Expect = 6e-42
 Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 39/260 (15%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
           T+   L L+ N+++ ++      L  L++L + +N +  +      F+ L +   L   +
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--AFNGLANLNTLELFD 121

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSM-NSSL 115
           NR+T++ +G    L+KL+   +  N I  +    F  + +L  + L    +++ +   + 
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
            GL+ L YL L+   L E  + ++  L +L  +DLS N ++                   
Sbjct: 182 EGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR---------------- 223

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
                        G+  G+  L +L +  ++++ I  + F  L SL  ++++HN LT L 
Sbjct: 224 ------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 236 ETSKTFLPALEELFVSHNSL 255
               T L  LE + + HN  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  142 bits (360), Expect = 3e-38
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
            L  L  L L+ N ++++E G    L+ L  L +  N+L  +P+      S+L  L+  N
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 59  NRITSL-DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
           N I S+       +  L+  ++ +  +++ +    F+ L NL  ++L    +  +  +L+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT 204

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
            L KL  L LS N L+       +GL  L+ + +  ++I                     
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE----------------- 247

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
                        A   +  L  ++L+HN L  +  D F  L  L+ + + HN
Sbjct: 248 -----------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  162 bits (412), Expect = 3e-44
 Identities = 66/301 (21%), Positives = 116/301 (38%), Gaps = 21/301 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
             + L  L +  N +  LE      L  L++L ++ N+L  L        + L  L+  +
Sbjct: 47  RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 59  NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---S 114
           N I  +          L   ++  N ++  +      L NL  + L NN+I ++ S    
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
           +   + L  L LS NQ+ EF       + RL  + L+  ++    T           T+I
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSI 224

Query: 175 FELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
             L L ++++          +    L+ LDLS+N L  +  D F  L  L+   + +N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 232 TTLEETSKTFLPALEELFVSHN---------SLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
             L   S   L  +  L +  +         SL ++D   F  L  L   ++  N+I  I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 282 N 282
            
Sbjct: 345 K 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (404), Expect = 4e-43
 Identities = 69/355 (19%), Positives = 136/355 (38%), Gaps = 30/355 (8%)

Query: 5   LNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRIT 62
                ++   L  ++      L  L+ L +E N +  + S++      L  L  +N+  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 63  SLD---GLLRGL--TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSL 115
                      L  + L + N+  N+I+ +  D F  L +L+ + L  N+I         
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
            GL  +  +YLS+N+  +   +    +  L+ + L    +      +   +  Q + N+ 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV---DSSPSPFQPLRNLT 483

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG--------LDSLKMLDI 226
            L L +N I N++   L G+  L  LDL HN L  +      G        L  L +L++
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
             N    +       L  L+ + +  N+L  L    F+    L   +L  N I ++  ++
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 286 ALKTQCQIFGLNSTLRIYLEGNPVLCD-DSMRAVIDAM-ETINNNTKIHGETICQ 338
                       +   + +  NP  C  +S+   ++ + ET  N  ++    +C 
Sbjct: 604 FGP------AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (399), Expect = 2e-42
 Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 20/321 (6%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
            T++  L L +N+L+ L        S+L  L +  N +  L  +  Q    L  L   +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
            ++ L D      T L   ++  N I  ++ + F    NL ++ L +N ++S    +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 118 LTKLAYLYLSHNQLTEFLLDDIR--GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           L  L  L LS+N++     +++       L+ ++LS N+I +F            +  +F
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-----SPGCFHAIGRLF 198

Query: 176 ELKLQHNEIENL----DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHN 229
            L L + ++           +    +  L LS+++L T S   F+GL   +L MLD+S+N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALK 288
            L  +   S  +LP LE  F+ +N++  L     HGL  +   +L  +  K      +L 
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 289 T-QCQIFGLNSTLR-IYLEGN 307
                 F     L  + +E N
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDN 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (381), Expect = 5e-40
 Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 24/304 (7%)

Query: 1   GLTDLNWLFLNNNRLKSL----EGQLGTLSKLQLLVIEQNQLEALPSDI---QLFSQLGS 53
            +  L  LFLNN +L              + ++ L +  +QL    +       ++ L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 54  LYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
           L  + N +  + +     L +L+ F +++N I  +       L N+  ++L+ +      
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 113 S----------SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
           S          S   L  L +L +  N +     +   GL  L+ + LS +  +     N
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 163 EGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDS 220
           E    +   + +  L L  N+I  +   A   +  L  LDL  N++ + ++  ++ GL++
Sbjct: 373 ETFVSL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD---FHGLPVLCKADLAHNN 277
           +  + +S+N    L   S   +P+L+ L +   +L  +D     F  L  L   DL++NN
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 278 IKAI 281
           I  I
Sbjct: 492 IANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  149 bits (379), Expect = 1e-39
 Identities = 66/300 (22%), Positives = 114/300 (38%), Gaps = 27/300 (9%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLG-----SL 54
            L  L  L + +N +  +       L  L+ L +  +         + F  L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 55  YANNNRITSL-DGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMN 112
               N+I+ +       L  L+V ++  N+I   +   E++ L N+  I L  N+   + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 113 S-SLSGLTKLAYLYLSHNQLT--EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
             S + +  L  L L    L   +      + L+ L  +DLS N I          + ++
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-----DMLE 501

Query: 170 GVTNIFELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 220
           G+  +  L LQHN +  L            L G+  L  L+L  N    I  + F  L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF--HGLPVLCKADLAHNNI 278
           LK++D+  N L TL  +      +L+ L +  N +T ++K         L + D+  N  
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (370), Expect = 1e-38
 Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 30/332 (9%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTL--SKLQLLVIEQNQLEALPSD-IQLFSQLGSLYA 56
             T +  L L+N++L +        L  + L +L +  N L  + +D      QL   + 
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 57  NNNRITSLD-GLLRGLTKLQVFNMD---------FNQITMVRRDEFQNLHNLDSISLQNN 106
             N I  L    L GL  ++  N+             +  +    FQ L  L+ +++++N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 107 QITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDI----RGLKRLRTVDLSYNKINKFGTR 161
            I  +  +  +GL  L YL LS++  +   L +          L  ++L+ NKI+K    
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-- 397

Query: 162 NEGKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
               +    + ++  L L  NEI          G+  +  + LS+NK   ++ + F  + 
Sbjct: 398 ---SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 220 SLKMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN 276
           SL+ L +    L  ++ +   F  L  L  L +S+N++  ++ D   GL  L   DL HN
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 277 NIKAINIQLALKTQCQIFGLNSTLR-IYLEGN 307
           N+  +                S L  + LE N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  142 bits (360), Expect = 3e-37
 Identities = 58/266 (21%), Positives = 119/266 (44%), Gaps = 18/266 (6%)

Query: 28  LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
            ++      +L  +P D+   + +  L   +N++  L        ++L   ++ FN I+ 
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 87  VRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145
           +  +  Q L  L  ++LQ+N+++ ++  + +  T L  L+L  N + +   +     K L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL---DL 202
            T+DLS+N ++              + N+ EL L +N+I+ L    + I   S L   +L
Sbjct: 124 ITLDLSHNGLSST-----KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTL---EETSKTFLPALEELFVSHNSLTRLD 259
           S N+++  SP  F  +  L  L +++  L      +   +    ++  L +S++ L+   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 260 KD-FHGLPV--LCKADLAHNNIKAIN 282
              F GL    L   DL++NN+  + 
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVG 264

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (337), Expect = 4e-34
 Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 31/307 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
             T+L  L L +N ++ ++         L  L +  N L +           L  L  +N
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 59  NRITSL---DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT----SM 111
           N+I +L   +  +   + L+   +  NQI       F  +  L  + L N Q+       
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK--RLRTVDLSYNKINKFGTRNEGKNQVQ 169
                  T +  L LS++QL+        GLK   L  +DLSYN +N  G      +   
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-----NDSFA 269

Query: 170 GVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN---------KLRTISPDDFIGLD 219
            +  +    L++N I++L   +L G+  +  L+L  +          L  I    F  L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA-----DLA 274
            L+ L++  N +  ++    T L  L+ L +S++  +           L  +     +L 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 275 HNNIKAI 281
            N I  I
Sbjct: 390 KNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 7e-31
 Identities = 55/273 (20%), Positives = 101/273 (36%), Gaps = 22/273 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYAN 57
             + L+ L L  N++  +E      L  L++L +  N++       + +    +  +Y +
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSM-NS 113
            N+   L       +  LQ   +    +  V      FQ L NL  + L NN I ++ + 
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 114 SLSGLTKLAYLYLSHNQLTEF--------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
            L GL KL  L L HN L            +  ++GL  L  ++L  N  ++        
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-----IPV 553

Query: 166 NQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSLKM 223
              + +  +  + L  N +  L          L  L+L  N + ++    F     +L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
           LD+  N      E+   F+  + E   +   L+
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 36/213 (16%)

Query: 97  NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           + +     + ++T +   L   T +  L L+HNQL      +     +L ++D+ +N I+
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 216
           K                          +E        +  L  L+L HN+L  +S   F 
Sbjct: 63  K--------------------------LE--PELCQKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 217 GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAH 275
              +L  L +  N +  ++         L  L +SHN L+         L  L +  L++
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
           N I+A+  +        IF  +S  ++ L  N 
Sbjct: 155 NKIQALKSEE-----LDIFANSSLKKLELSSNQ 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  155 bits (393), Expect = 4e-44
 Identities = 44/276 (15%), Positives = 101/276 (36%), Gaps = 27/276 (9%)

Query: 40  ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
           A+    Q  ++       ++ +      L +    ++  ++  N ++ +   +      L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 99  DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
           + ++L +N +      L  L+ L  L L++N + E     +     + T+  + N I++ 
Sbjct: 61  ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRV 114

Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
                             + L +N+I  L D        +  LDL  N++ T++  +   
Sbjct: 115 SCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 218 -LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
             D+L+ L++ +N +  ++         L+ L +S N L  +  +F     +    L +N
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
            +  I        +  +    +     L GN   C 
Sbjct: 225 KLVLI--------EKALRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  140 bits (354), Expect = 2e-38
 Identities = 52/291 (17%), Positives = 110/291 (37%), Gaps = 17/291 (5%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
                   + ++ LK        +   ++ L +  N L  + +  +  F++L  L  ++N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
            +      L  L+ L+  +++ N +      E     +++++   NN I+ +  S S   
Sbjct: 69  VLYETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV--SCSRGQ 120

Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
               +YL++N++T     D     R++ +DL  N+I+         +       +  L L
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS----SDTLEHLNL 176

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
           Q+N I ++    +    L  LDLS NKL  +   +F     +  + + +N L  +E+  +
Sbjct: 177 QYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
                LE   +  N                   +A   +K +  Q   +  
Sbjct: 235 F-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 4e-38
 Identities = 54/286 (18%), Positives = 98/286 (34%), Gaps = 29/286 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
              ++  L L+ N L  +    L   +KL+LL +  N L     D++  S L +L  NNN
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN 90

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
            +  L         ++  +   N I+ V     Q   N+    L NN+IT   +      
Sbjct: 91  YVQELL----VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCR 143

Query: 119 TKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           +++ YL L  N++      +       L  ++L YN I                  +  L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTL 196

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L  N++  +        G++ + L +NKL  I         +L+  D+  N        
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGT-- 253

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
                  L + F  +  +  + K     L    + +     +    
Sbjct: 254 -------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 6e-29
 Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 16/254 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L+ L  L LNNN ++ L         ++ L    N +  +           ++Y  NN+
Sbjct: 78  SLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGL 118
           IT L D      +++Q  ++  N+I  V   E   +   L+ ++LQ N I  +       
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVF 190

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
            KL  L LS N+L   +  + +    +  + L  NK+         +  ++   N+    
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFD 243

Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
           L+ N                   ++   ++ ++  +        +          L    
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 239 KTFLPALEELFVSH 252
              L AL      H
Sbjct: 304 ADRLIALGHHHHHH 317

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  154 bits (390), Expect = 2e-43
 Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 22/265 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
           GL  L  L L NN++  +       L KLQ L I +N L  +P +  L S L  L  ++N
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDN 133

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
           RI  +  G+  GL  +    M  N +         F  L  L+ + +   ++T +   L 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL- 191

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
               L  L+L HN++    L+D+    +L  + L +N+I            +  +  + E
Sbjct: 192 -PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----ENGSLSFLPTLRE 245

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD------SLKMLDISHNL 230
           L L +N++  +   L  +  L  + L  N +  +  +DF  +           + + +N 
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 231 LTTLEETSKTF--LPALEELFVSHN 253
           +   E    TF  +     +   + 
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  150 bits (382), Expect = 2e-42
 Identities = 63/283 (22%), Positives = 115/283 (40%), Gaps = 12/283 (4%)

Query: 28  LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
           L+++      L+A+P +I        L   NN I+ L     +GL  L    +  N+I+ 
Sbjct: 35  LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 87  VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 146
           +    F  L  L  + +  N +  +  +L   + L  L +  N++ +       GL+ + 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 206
            +++  N +   G      + +     +  L++   ++  +   L     L+ L L HNK
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK 204

Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP 266
           ++ I  +D +    L  L + HN +  +E  S +FLP L EL + +N L+R+      L 
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
           +L    L  NNI  + +                  I L  NPV
Sbjct: 265 LLQVVYLHTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  141 bits (357), Expect = 9e-39
 Identities = 60/294 (20%), Positives = 109/294 (37%), Gaps = 47/294 (15%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
            D   L L NN +  L +     L  L  LV+  N++  +                    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------------------- 94

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
              +     L KLQ   +  N +  +  +   +L  L    + +N+I  +     SGL  
Sbjct: 95  ---EKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRN 148

Query: 121 LAYLYLSHNQLTEFLLDDI--RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
           +  + +  N L     +     GLK L  + +S  K+                  + EL 
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGI--------PKDLPETLNELH 199

Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           L HN+I+ +    L+    L RL L HN++R I       L +L+ L + +N L+ +   
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA------DLAHNNIKAINIQ 284
               L  L+ +++  N++T++  + F  +    K        L +N +    +Q
Sbjct: 260 LPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 1e-28
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 31/212 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLS--KLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
           GL ++N + +  N L++   + G     KL  L I + +L  +P D  L   L  L+ ++
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDH 202

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
           N+I ++    L   +KL    +  NQI M+       L  L  + L NN+++ + + L  
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           L  L  +YL  N +T+  ++D   +                                  +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPV-----------------------GFGVKRAYYNGI 299

Query: 178 KLQHNEIENLD---GALMGIHGLSRLDLSHNK 206
            L +N +   +        +     +   + K
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (398), Expect = 1e-42
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 15/284 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L +++ + L    +K LE  +    K Q L I + QL+  P+       L SL    N+
Sbjct: 283 CLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNK 339

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL--HNLDSISLQNNQITSMNSSLSGL 118
            +     +  L  L   ++  N ++      + +L  ++L  + L  N    M+++  GL
Sbjct: 340 GSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
            +L +L   H+ L           L++L  +D+SY        + +      G+T++  L
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-----KIDFDGIFLGLTSLNTL 453

Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           K+  N  ++  L         L+ LDLS  +L  IS   F  L  L++L++SHN L  L+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
            +    L +L  L  S N +        H    L   +L +N++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (373), Expect = 3e-39
 Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 14/262 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
                  L +   +LK        L  L+ L +  N+       + L   L  L  + N 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVAL-PSLSYLDLSRNA 361

Query: 61  ITSLD---GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSL 115
           ++          G   L+  ++ FN    +    F  L  L  +  Q++ +  +   S+ 
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
             L KL YL +S+            GL  L T+ ++ N        N         TN+ 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLT 476

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
            L L   ++E +  G    +H L  L++SHN L  +    +  L SL  LD S N + T 
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 235 EETSKTFLPALEELFVSHNSLT 256
           +   + F  +L    +++NS+ 
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 1e-35
 Identities = 69/371 (18%), Positives = 122/371 (32%), Gaps = 44/371 (11%)

Query: 1   GLTDLNWLFLNNNRLKSL-------EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS 53
            L  L+   L     K            +  L  + +             DI  F  L +
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 54  LYA---NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
           + A       I  L+ +     K Q  ++   Q+         +L  L S++L  N+ + 
Sbjct: 287 VSAMSLAGVSIKYLEDV-PKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSI 342

Query: 111 MNSSLSGLTKLAYLYLSHNQLTEFLLD--DIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
            +     L  L+YL LS N L+          G   LR +DLS+N               
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS------ANF 395

Query: 169 QGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
            G+  +  L  QH+ ++ +    A + +  L  LD+S+   +      F+GL SL  L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 227 SHN-LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
           + N                L  L +S   L ++    F  L  L   +++HNN+  ++  
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 285 L-----ALKT-----------QCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINN 327
                 +L T           +  +     +L    L  N V C    +  +  ++    
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575

Query: 328 NTKIHGETICQ 338
                 +  C 
Sbjct: 576 FLVNVEQMTCA 586

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (343), Expect = 4e-35
 Identities = 58/323 (17%), Positives = 115/323 (35%), Gaps = 41/323 (12%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNR 60
           +    + L+ N LK L        S+LQ L + + ++E +          L +L    N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
           I S   G   GLT L+       ++  +       L  L  +++ +N I S    +  S 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINKFG-------------- 159
           LT L ++ LS+N +    ++D++ L+       ++D+S N I+                 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 160 -----TRNEGKNQVQGVTNIFELKLQHNEIENL-------DGALMGIHGLSR--LDLSHN 205
                + N  K  +Q +  +   +L   E ++           + G+  ++     L++ 
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 206 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
              +     F  L ++  + ++   +  LE          + L +    L +       L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQF--PTLDL 327

Query: 266 PVLCKADLAHNNIKAINIQLALK 288
           P L    L  N       ++AL 
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALP 350

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (338), Expect = 2e-34
 Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 30/301 (9%)

Query: 1   GLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGS 53
            L  L  L + +N + S +       L+ L  + +  N ++ +  +      +      S
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 54  LYANNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSMN 112
           L  + N I  +        KL    +  N   + + +   QNL  L    L   +     
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 113 -------SSLSGLTKLAY--LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
                  S + GL  +      L++       +     L  +  + L+   I        
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL----- 300

Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
               V        L +   +++        +  L  L L+ NK         + L SL  
Sbjct: 301 --EDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSY 354

Query: 224 LDISHNLLTTLEETSKTFL--PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
           LD+S N L+     S + L   +L  L +S N    +  +F GL  L   D  H+ +K +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 282 N 282
            
Sbjct: 415 T 415

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (325), Expect = 1e-32
 Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 36/317 (11%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--------SDIQLFSQLGSLYANNN 59
           L ++ N +  ++ Q     KL  L +  N   +          + + +   +   + +  
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 60  RITSLD-GLLRGLTKLQV--FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
            +   +  ++ GL  + +  F + +         +F  L N+ ++SL    I  +   + 
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVP 304

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
              K   L +   QL +F       L  L+++ L+ NK +    +         + ++  
Sbjct: 305 KHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK-------VALPSLSY 354

Query: 177 LKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
           L L  N +        + +G + L  LDLS N    I   +F+GL+ L+ LD  H+ L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKR 413

Query: 234 LEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQC 291
           + E S    L  L  L +S+ +        F GL  L    +A N+ K   +        
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------- 466

Query: 292 QIFGLNSTLR-IYLEGN 307
            +F   + L  + L   
Sbjct: 467 NVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (321), Expect = 4e-32
 Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 24/265 (9%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
            +L  +P D  + S   ++  + N +  L        ++LQ  ++   +I  +    +  
Sbjct: 21  QKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           LH+L ++ L  N I S +  S SGLT L  L     +L       I  L  L+ +++++N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLR 208
            I+              +TN+  + L +N I+ +    L  +         LD+S N + 
Sbjct: 139 FIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 209 TISPDDFIGLDSLKMLDISHNLLTT-LEETSKTFLPALEEL------FVSHNSLTRLDKD 261
            I    F G+  L  L +  N  ++ + +T    L  L         F    +L   +  
Sbjct: 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 262 -FHGLPVLCKA--DLAHNNIKAINI 283
              GL  +      L + N  + +I
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDI 278

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 32/184 (17%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           +    + +++ +   +   +    + LS N L             L+ +DLS  +I    
Sbjct: 15  TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-- 70

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                                   IE  D A  G+H LS L L+ N +++ SP  F GL 
Sbjct: 71  ------------------------IE--DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCKADLAHNN 277
           SL+ L      L +LE      L  L++L V+HN +        F  L  L   DL++N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 278 IKAI 281
           I+ I
Sbjct: 165 IQTI 168

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (400), Expect = 2e-42
 Identities = 67/309 (21%), Positives = 113/309 (36%), Gaps = 26/309 (8%)

Query: 1   GLTDLNWLFL-NNNRLKSLEGQLGTLSKLQLLVIEQNQLE----------ALPSDIQLFS 49
            L DL  + L N   +  L   L  L +LQ L I  N+             L  D     
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 50  QLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
           ++   Y   N +        L+ + KL + +   N++  +  + F     L  + L  NQ
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQ 606

Query: 108 ITSMNSSL-SGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
           I  +     +   ++  L  SHN+L     + + + +  + +VD SYNKI   G      
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 166 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-------PDDFIG 217
                  N   + L +NEI+            +S + LS+N + +I          ++  
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 218 LDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
              L  +D+  N LT+L ++   T LP L  + VS+N  +           L    + H 
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 277 NIKAINIQL 285
                N  L
Sbjct: 787 RDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (362), Expect = 2e-37
 Identities = 52/303 (17%), Positives = 110/303 (36%), Gaps = 31/303 (10%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
           +  L  L   +N+++ LE   GT  KL  L ++ NQ+E +P D      Q+  L  ++N+
Sbjct: 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630

Query: 61  ITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEF-----QNLHNLDSISLQNNQITSM-N 112
           +  +      + +  +   +  +N+I    R+           N  +++L  N+I     
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 113 SSLSGLTKLAYLYLSHNQLTEF-------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
              +  + ++ + LS+N +T            + +    L T+DL +NK+          
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD----D 746

Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH------NKLRTISPDDFIGLD 219
            +   +  +  + + +N   +     +    L    + H      N++    P       
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNI 278
           SL  L I  N +  +    +   P L  L ++ N    +D              L ++  
Sbjct: 807 SLIQLQIGSNDIRKV---DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 279 KAI 281
           + I
Sbjct: 864 QDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (353), Expect = 4e-36
 Identities = 49/323 (15%), Positives = 103/323 (31%), Gaps = 29/323 (8%)

Query: 4   DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 63
               +    NR+  +   +  L+KLQ++    +        +              +  +
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD---YAKQYEN 482

Query: 64  LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN----------S 113
            +     L  L    +          D   +L  L S+++  N+  S             
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 114 SLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
                 K+   Y+ +N L EF     ++ + +L  +D  +NK+                 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-------FGTNV 595

Query: 173 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNL 230
            + +LKL +N+IE + +        +  L  SHNKL+ I        +  +  +D S+N 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 231 LTTLEETSKTFLPA-----LEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
           + +        +          + +S+N + +   + F     +    L++N + +I   
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 285 LALKTQCQIFGLNSTLRIYLEGN 307
                            I L  N
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (326), Expect = 1e-32
 Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 17/308 (5%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
           +      L   + +L     LQ  +    +++ +  D ++  +   +    NRIT +   
Sbjct: 385 MHYKKMFLDYDQ-RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
           ++ LTKLQ+     +  T           N         Q  +   S S L  L  + L 
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANS----DYAKQYENEELSWSNLKDLTDVELY 499

Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ----VQGVTNIFELKLQHNE 183
           +      L D +  L  L++++++ N+            +          I    + +N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 184 IENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
           +E      +L  +  L  LD  HNK+R +    F     L  L + +N +  + E    F
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 242 LPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299
              +E L  SHN L  +    +   + V+   D ++N I +    ++       +   + 
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--CSMDDYKGINA 675

Query: 300 LRIYLEGN 307
             + L  N
Sbjct: 676 STVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (289), Expect = 8e-28
 Identities = 35/264 (13%), Positives = 95/264 (35%), Gaps = 26/264 (9%)

Query: 1   GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDI------QLFSQLG 52
               +  L  ++N+LK +       ++  +  +    N++ +   +I             
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 53  SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMV-------RRDEFQNLHNLDSISLQ 104
           ++  + N I      L    + +    +  N +T +       +   ++N + L +I L+
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 105 NNQITSMNSSL--SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI---NKFG 159
            N++TS++     + L  L+ + +S+N  +           +L+   + + +    N+  
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
              +    +    ++ +L++  N+I  +D  L     L  LD++ N   +I         
Sbjct: 796 R--QWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYI 851

Query: 220 SLKMLDISHNLLTTLEETSKTFLP 243
              M  + ++    +       + 
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 13/154 (8%)

Query: 1   GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY--- 55
               L  + L  N+L SL  + +  TL  L  + +  N   + P+     SQL +     
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

Query: 56  ----ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
                 N  +      +     L    +  N I  V       L+ LD   + +N   S+
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADNPNISI 842

Query: 112 N-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
           + +S+    +     L +++  +    D  G++R
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 39/303 (12%), Positives = 80/303 (26%), Gaps = 52/303 (17%)

Query: 53  SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
            L      I     L      L   N  +   T+       N +    + +  +Q     
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV-- 317

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG------------- 159
             L    ++  L L+       + D I  L  L+ +    +     G             
Sbjct: 318 -DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 160 -------TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS- 211
                    +  K  +     +    L  + I      +  I   SR+ L   ++  ++ 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTN 435

Query: 212 -----PDDFIGLDSLKMLDISHNLLTTLEETSKTF-------------------LPALEE 247
                      L  L+++  +++  T                            L  L +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 248 LFVSHNS-LTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQC--QIFGLNSTLRIYL 304
           + + +   +T+L    + LP L   ++A N   +     A  T+              Y+
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 305 EGN 307
             N
Sbjct: 556 GYN 558

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  149 bits (377), Expect = 6e-42
 Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 15/251 (5%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM--VRRDEF 92
             L ++P+ I   S    L   +N++ SL  G+   LT+L   ++  N ++         
Sbjct: 17  KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 93  QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLS 151
               +L  + L  N + +M+S+  GL +L +L   H+ L +     +   L+ L  +D+S
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 152 YNKINKFGTRNEGKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRT 209
           +                 G++++  LK+  N   EN        +  L+ LDLS  +L  
Sbjct: 135 HTHTRVAF-----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV- 267
           +SP  F  L SL++L++SHN   +L+      L +L+ L  S N +    K      P  
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 268 LCKADLAHNNI 278
           L   +L  N+ 
Sbjct: 250 LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  148 bits (375), Expect = 1e-41
 Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 23/294 (7%)

Query: 53  SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
            +  N+  +TS+  G+    T+L    ++ N++  +    F  L  L  +SL +N ++  
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 112 ---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
              + S  G T L YL LS N +   +  +  GL++L  +D  ++ +     +    +  
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL----KQMSEFSVF 122

Query: 169 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDI 226
             + N+  L + H       +G   G+  L  L ++ N       PD F  L +L  LD+
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
           S   L  L  T+   L +L+ L +SHN+   LD   +  L  L   D + N+I     Q 
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 286 ALKTQCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQ 338
                  +    S+L  + L  N   C    ++ +  ++             C 
Sbjct: 243 -------LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  144 bits (365), Expect = 4e-40
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 36/261 (13%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYANN 58
           +    L L +N+L+SL  G    L++L  L +  N L       Q     + L  L  + 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
           N + ++     GL +L+  +   + +  +     F +L NL  + + +       +   +
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 117 GLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           GL+ L  L ++ N   E  L DI   L+ L  +DLS  ++                    
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------------------- 187

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
                  ++     A   +  L  L++SHN   ++    +  L+SL++LD S N + T +
Sbjct: 188 ------EQLSP--TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 236 ETSKTFLP-ALEELFVSHNSL 255
           +      P +L  L ++ N  
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  130 bits (328), Expect = 9e-35
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 36/237 (15%)

Query: 1   GLTDLNWLFLNNNRLKSLE---GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 57
            LT L  L L++N L             + L+ L +  N +  + S+     QL  L   
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 58  NNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NS 113
           ++ +  +    +   L  L   ++      +     F  L +L+ + +  N         
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
             + L  L +L LS  QL +        L  L+ +++S+N                    
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------------- 215

Query: 174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHN 229
                               ++ L  LD S N + T    +      SL  L+++ N
Sbjct: 216 --------------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  149 bits (379), Expect = 6e-41
 Identities = 76/342 (22%), Positives = 133/342 (38%), Gaps = 38/342 (11%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
           GL+ L  L L+ N+   L  G    L+ L++L + Q  L+        F  L SL     
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 57  NNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMN 112
            +N I  +        + +  V ++ FN++  +  ++  N    +   + L +  +  MN
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 113 S---------SLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLSYNKI----- 155
                     +    T +  L LS N   E +     D     +++++ LS +       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 156 --NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
               F   +    +    + +    L  ++I  L          L +L L+ N++  I  
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
           + F GL  L  L++S N L +++      L  LE L +S+N +  L    F GLP L + 
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 272 DLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
            L  N +K++           IF  L S  +I+L  NP  C 
Sbjct: 377 ALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNPWDCS 410

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (279), Expect = 5e-27
 Identities = 54/310 (17%), Positives = 106/310 (34%), Gaps = 59/310 (19%)

Query: 28  LQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQI 84
           +  + +  N +  L          L  L         +  +   RGL+ L +  +D+NQ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 85  TMVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDI-R 140
             +    F  L NL+ ++L    +       +    LT L  L L  N + +        
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD---------GAL 191
            ++R   +DL++NK+       E         +   L+L    +++++         G  
Sbjct: 152 NMRRFHVLDLTFNKVKSI---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGL--------------------------------- 218
                ++ LDLS N  +      F                                    
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 219 ------DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
                   +K  D+S + +  L ++  +    LE+L ++ N + ++D + F GL  L K 
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 272 DLAHNNIKAI 281
           +L+ N + +I
Sbjct: 329 NLSQNFLGSI 338

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (389), Expect = 7e-41
 Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 32/318 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
            L +L  L L ++++  L       L  L  L +    L         F  L +L     
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 57  NNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMN 112
           + N+I SL        L  L+  +   NQI +V   E + L    L   SL  N + S  
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 113 S-------SLSGLTKLAYLYLSHNQLTEFLLD------------DIRGLKRLRTVDLSYN 153
           S       +      L  L +S N  T  +               +     +      ++
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISP 212
            I      ++        +++  L L H  + +L+      +  L  L+L++NK+  I+ 
Sbjct: 251 NIKDP---DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
           + F GLD+L++L++S+NLL  L  ++   LP +  + +  N +  +    F  L  L   
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 272 DLAHNNIKAINIQLALKT 289
           DL  N +  I+   ++  
Sbjct: 368 DLRDNALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (386), Expect = 2e-40
 Identities = 78/365 (21%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQL--LVIEQNQLEALPSDI-QLFSQLGSLYAN 57
              +       + +K   +     L++  +  L +    + +L S + +    L  L   
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSL 115
            N+I  + D    GL  LQV N+ +N +  +    F  L  +  I LQ N I    + + 
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV------- 168
             L KL  L L  N LT      I  +  +  + LS NK+      N   N +       
Sbjct: 359 KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413

Query: 169 ---------QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLR-----TISP 212
                      V ++  L L  N   +   D        L +L L  N L+      +  
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKAD 272
           D F GL  L++L ++HN L +L     + L AL  L ++ N LT L  +      L   D
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILD 532

Query: 273 LAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIH 332
           ++ N + A N  +            S   + +  N  +C+  +   I+ +   N      
Sbjct: 533 ISRNQLLAPNPDV----------FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

Query: 333 GETIC 337
              I 
Sbjct: 583 PADIY 587

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (368), Expect = 5e-38
 Identities = 62/309 (20%), Positives = 120/309 (38%), Gaps = 27/309 (8%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYAN 57
            L     L L+ N ++++       L +LQLL +              +    L  L   
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 58  NNRITSLD-GLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSM--N 112
           +++I  L     +GL  L    + F  ++  +++   F+NL  L  + L  NQI S+  +
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLSYNKINKFGTRNEGKN-QVQ 169
            S   L  L  +  S NQ+      ++  L  K L    L+ N +    + + GK     
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 170 GVTNIFELKLQHNEIENL-------------DGALMGIHGLSRLDLSHNKLRTISPDDFI 216
               +  L +  N                    +L+  H +       + ++    + F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 217 GLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADL 273
           GL   S++ LD+SH  + +L       L  L+ L +++N + ++  + F+GL  L   +L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 274 AHNNIKAIN 282
           ++N +  + 
Sbjct: 322 SYNLLGELY 330

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (302), Expect = 2e-29
 Identities = 44/250 (17%), Positives = 82/250 (32%), Gaps = 28/250 (11%)

Query: 58  NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSL 115
             R  +L  + + L   +   + FN I  V    F  L  L  + L +          + 
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
             L  L  L L  +++     D  +GL  L  + L +  ++    ++      + +  + 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD---GYFRNLKALT 126

Query: 176 ELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLL 231
            L L  N+I +L    +   ++ L  +D S N++  +   +   L   +L    ++ N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 232 TTLEETSKTFLP------ALEELFVSHNSLTRLDKD-------------FHGLPVLCKAD 272
            +                 LE L VS N  T                        +  A 
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 273 LAHNNIKAIN 282
              +NIK  +
Sbjct: 247 FGFHNIKDPD 256

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.0 bits (213), Expect = 3e-18
 Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 24/253 (9%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANN 58
            +  +  +FL+ N+L +L     T + + L    +N+LE L     +     L  L  N 
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLS---ENRLENLDILYFLLRVPHLQILILNQ 435

Query: 59  NRITSL--DGLLRGLTKLQVFNMDFNQI-----TMVRRDEFQNLHNLDSISLQNNQITSM 111
           NR +S   D        L+   +  N +     T +  D F+ L +L  + L +N + S+
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 112 -NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF--------GTRN 162
                S LT L  L L+ N+LT   L        L  +D+S N++              +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD 553

Query: 163 EGKNQVQGVTNIFEL-KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
              N+      +       ++    + G    I+ +     S   L ++S +     + L
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

Query: 222 KMLDISHNLLTTL 234
           K L  S  ++ T+
Sbjct: 614 KSLKFSLFIVCTV 626

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  145 bits (367), Expect = 1e-40
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 34  EQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 92
            Q  L+A+P  I   +    ++ + NRI+ +     R    L +  +  N +  +    F
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 93  QNLHNLDSISLQNN-QITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             L  L+ + L +N Q+ S+  ++  GL +L  L+L    L E      RGL  L+ + L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 209
             N +          +  + + N+  L L  N I ++ + A  G+H L RL L  N++  
Sbjct: 137 QDNALQALPD-----DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
           + P  F  L  L  L +  N L+ L   +   L AL+ L ++ N  
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  144 bits (366), Expect = 2e-40
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 13/225 (5%)

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-S 114
               + ++  G+     ++    +  N+I+ V    F+   NL  + L +N +  +++ +
Sbjct: 19  PQQGLQAVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 115 LSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
            +GL  L  L LS N QL         GL RL T+ L    + + G         +G+  
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAA 130

Query: 174 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           +  L LQ N ++ L D     +  L+ L L  N++ ++    F GL SL  L +  N + 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 233 TLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN 276
            +   +   L  L  L++  N+L+ L  +    L  L    L  N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  135 bits (342), Expect = 4e-37
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 37/234 (15%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----AN 57
                +FL+ NR+  +          L +L +  N L  + +    F+ L  L     ++
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSD 89

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SL 115
           N ++ S+      GL +L   ++D   +  +    F+ L  L  + LQ+N + ++   + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
             L  L +L+L  N+++       RGL  L  + L  N++                    
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH---------------- 193

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
                         A   +  L  L L  N L  +  +    L +L+ L ++ N
Sbjct: 194 ------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 4e-24
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
           GL  L+ L L+   L+ L  G    L+ LQ L ++ N L+ALP D  +    L  L+ + 
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           NRI+S+ +   RGL  L    +  N++  V    F++L  L ++ L  N ++++   +L+
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 117 GLTKLAYLYLSHNQL 131
            L  L YL L+ N  
Sbjct: 223 PLRALQYLRLNDNPW 237

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-40
 Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 27/309 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  +  L +   ++ S++G +  L+ L+ L +  NQ+  +   +    +L +LY   N+
Sbjct: 42  ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           IT +  L + LT L+   ++ + I+ +      NL  + S++L  N   S  S LS +T 
Sbjct: 100 ITDISAL-QNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L YL ++ +++ +  +  I  L  L ++ L+YN+I            +  +T++      
Sbjct: 157 LNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAY 207

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N+I ++   +  +  L+ L + +NK+  +SP     L  L  L+I  N ++ +      
Sbjct: 208 VNQITDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKD- 263

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
            L  L+ L V  N ++ +    + L  L    L +N +   +++        I GL +  
Sbjct: 264 -LTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDME-------VIGGLTNLT 314

Query: 301 RIYLEGNPV 309
            ++L  N +
Sbjct: 315 TLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-40
 Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  L  L++  N++  +   L  L+ L+ L + ++ +  +   +   +++ SL    N 
Sbjct: 86  NLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
             S    L  +T L    +  +++  V      NL +L S+SL  NQI  + S L+ LT 
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDI-SPLASLTS 200

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L Y     NQ+T+  +  +  + RL ++ +  NKI          + +  ++ +  L++ 
Sbjct: 201 LHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL-------SPLANLSQLTWLEIG 251

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N+I +++  +  +  L  L++  N++  IS      L  L  L +++N L   +     
Sbjct: 252 TNQISDINA-VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK 279
            L  L  LF+S N +T +      L  +  AD A+  IK
Sbjct: 309 GLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (365), Expect = 1e-39
 Identities = 56/257 (21%), Positives = 122/257 (47%), Gaps = 17/257 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT+L  L+LN + +  +   L  L+K+  L +  N   +  S +   + L  L    ++
Sbjct: 108 NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +  +  +   LT L   ++++NQI  +      +L +L   +   NQIT + + ++ +T+
Sbjct: 167 VKDVTPI-ANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDI-TPVANMTR 222

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L + +N++T+  L  +  L +L  +++  N+I+         N V+ +T +  L + 
Sbjct: 223 LNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI-------NAVKDLTKLKMLNVG 273

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N+I ++   L  +  L+ L L++N+L     +   GL +L  L +S N +T +   +  
Sbjct: 274 SNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS- 331

Query: 241 FLPALEELFVSHNSLTR 257
            L  ++    ++  + +
Sbjct: 332 -LSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (329), Expect = 1e-34
 Identities = 59/282 (20%), Positives = 123/282 (43%), Gaps = 23/282 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           G   L  L    N++         L++    V+++  +  + +  +    +  L     +
Sbjct: 1   GAATLATLPAPINQIFPDAD----LAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEK 55

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           + S+ G +  LT L+  N++ NQIT +      NL  L ++ +  N+IT + S+L  LT 
Sbjct: 56  VASIQG-IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDI-SALQNLTN 111

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  LYL+ + +++  +  +  L ++ +++L  N            + +  +T +  L + 
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVT 163

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            ++++++   +  +  L  L L++N++  ISP     L SL       N +T +   +  
Sbjct: 164 ESKVKDVT-PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN- 219

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
            +  L  L + +N +T L      L  L   ++  N I  IN
Sbjct: 220 -MTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN 259

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 1e-39
 Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 27/279 (9%)

Query: 40  ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
           A+    Q  ++       ++ +      L +    ++  ++  N ++ +   +      L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 99  DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
           + ++L +N +      L  L+ L  L L++N + E     +     + T+  + N I++ 
Sbjct: 61  ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRV 114

Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
                             + L +N+I  L D        +  LDL  N++ T++  +   
Sbjct: 115 SCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 218 -LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
             D+L+ L++ +N +  ++         L+ L +S N L  +  +F     +    L +N
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
            +  I        +  +    +     L GN   C    
Sbjct: 225 KLVLI--------EKALRFSQNLEHFDLRGNGFHCGTLR 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 6e-35
 Identities = 56/306 (18%), Positives = 102/306 (33%), Gaps = 21/306 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
              ++  L L+ N L  +    L   +KL+LL +  N L     D++  S L +L  NNN
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN 90

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
            +  L         ++  +   N I+ V     Q   N+    L NN+IT   +      
Sbjct: 91  YVQELL----VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCR 143

Query: 119 TKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           +++ YL L  N++      +       L  ++L YN I                  +  L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTL 196

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L  N++  +        G++ + L +NKL  I         +L+  D+  N        
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL 296
              F        V+  ++ +L         V           + +    A +        
Sbjct: 256 D-FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 297 NSTLRI 302
           ++ L  
Sbjct: 315 HALLSG 320

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (302), Expect = 5e-30
 Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 21/288 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L+ L  L LNNN ++     L     ++ L    N +  +           ++Y  NN+
Sbjct: 78  SLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGL 118
           IT L D      +++Q  ++  N+I  V   E   +   L+ ++LQ N I  +   +   
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-F 190

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
            KL  L LS N+L   +  + +    +  + L  NK+         +  ++   N+    
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFD 243

Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-----T 233
           L+ N                   ++   ++ ++  +        +               
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            +            L    +   RL+ +        + D      + +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 8e-30
 Identities = 29/303 (9%), Positives = 83/303 (27%), Gaps = 6/303 (1%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
             + + +L L  N + ++       +   L+ L ++ N +  +   +   ++L +L  ++
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSS 200

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
           N++  +    +    +   ++  N++ ++     +   NL+   L+ N            
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
                  ++   + +    +                          +           L 
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
            Q +E E L+           +D    + RT+     +   +   L+     L       
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 239 KTFLPALEELFVSHNSLTRLDKDFHGLP--VLCKADLAHNNIKAINIQLALKTQCQIFGL 296
           +     L+           L           L +A +       +  Q       + + +
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439

Query: 297 NST 299
              
Sbjct: 440 YQH 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 1e-37
 Identities = 59/285 (20%), Positives = 114/285 (40%), Gaps = 16/285 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT+++   L +  ++ ++         Q L +   +    P+       L  L   +N+
Sbjct: 280 CLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITM--VRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
             +    +  L  L+  ++  N ++             +L  + L  N + +M+S+  GL
Sbjct: 337 GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
            +L +L   H+ L +         L+ L  +D+S+                 G++++  L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVL 450

Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           K+  N  +   L      +  L+ LDLS  +L  +SP  F  L SL++L++SHN   +L+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV-LCKADLAHNNI 278
                 L +L+ L  S N +    K      P  L   +L  N+ 
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (309), Expect = 2e-30
 Identities = 66/345 (19%), Positives = 116/345 (33%), Gaps = 50/345 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
            L+ L+ L L  N ++SL  G    LS LQ LV  +  L +L +  I     L  L   +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 59  NRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
           N I S         LT L+  ++  N+I  +   + + LH +     S+ L  N +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
                  +L  L L +N  +  ++   I+GL  L    L   +       N  K     +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--NEGNLEKFDKSAL 251

Query: 172 TNIFELKLQHNEIENLD-------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
             +  L ++   +  LD            +  +S   L    +  +    F      + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHL 309

Query: 225 DISHNLLTTLEE-------------------TSKTFLPALEELFVSHNSLTRLD---KDF 262
           ++ +                            S+  LP+LE L +S N L+      +  
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 263 HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN 307
            G   L   DL+ N +  +             GL     +  + +
Sbjct: 370 FGTTSLKYLDLSFNGVITM--------SSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (309), Expect = 2e-30
 Identities = 65/311 (20%), Positives = 108/311 (34%), Gaps = 38/311 (12%)

Query: 5   LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL--EALPSDIQLFSQLGSL------YA 56
              L L+ N +  ++       +L  L +  N      + + IQ  + L         + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 57  NNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRR---DEFQNLHNLDSISLQNNQITSMN 112
           N   +   D   L GL  L +       +        D F  L N+ S SL +  I  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV- 297

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIR-------------------GLKRLRTVDLSYN 153
              S      +L L + +  +F    ++                    L  L  +DLS N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
            ++  G          G T++  L L  N +  +    +G+  L  LD  H+ L+ +S  
Sbjct: 358 GLSFKGC---CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 214 D-FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCK 270
             F+ L +L  LDISH             L +LE L ++ NS         F  L  L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 271 ADLAHNNIKAI 281
            DL+   ++ +
Sbjct: 475 LDLSQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 5e-30
 Identities = 63/299 (21%), Positives = 110/299 (36%), Gaps = 27/299 (9%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNR 60
                L L+ N L+ L      +  +LQ+L + + +++ +     Q  S L +L    N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
           I SL  G   GL+ LQ        +  +      +L  L  +++ +N I S       S 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINKFGTRNEGKNQVQGVTN 173
           LT L +L LS N++      D+R L ++     ++DLS N +N        K        
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKE-----IR 201

Query: 174 IFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLR---TISPDDFIGLDSLKMLDISH 228
           + +L L++N      +   + G+ GL    L   + R    +   D   L+ L  L I  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 229 NLLTTLEETSKTF------LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
             L  L+            L  +    +   ++ R+  DF         +L +      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQF 319

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 1e-29
 Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---NN 58
           L  L  L   +N+  +   ++  L  L+ L + +N L       Q      SL     + 
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           N + ++     GL +L+  +   + +  M     F +L NL  + + +       N   +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 117 GLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           GL+ L  L ++ N   E  L DI   L+ L  +DLS  ++               ++++ 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-----EQLSPTAFNSLSSLQ 497

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHNLLT- 232
            L + HN   +LD      ++ L  LD S N + T    +      SL  L+++ N    
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 233 TLEETS-KTFLPALEELFVSHNSLT-RLDKDFHGLPVL 268
           T E  S   ++    +L V    +      D  G+PVL
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (287), Expect = 9e-28
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 33/303 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIE----QNQLEALPSDIQLFSQLGSLY 55
            LT+L  L L++N+++S+    L  L ++ LL +      N +  +        +L  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 56  ANNNRIT--SLDGLLRGLTKLQVFNM------DFNQITMVRRDEFQNLHNLDSISLQNNQ 107
             NN  +   +   ++GL  L+V  +      +   +    +   + L NL     +   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 108 IT----SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
           +      +    + LT ++   L    +    + D       + ++L   K  +F T   
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLK- 323

Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSL 221
                  + ++  L    N+  N   + + +  L  LDLS N L  +        G  SL
Sbjct: 324 -------LKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCKADLAHNNIK 279
           K LD+S N + T+       L  LE L   H++L ++ +   F  L  L   D++H + +
Sbjct: 376 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 280 AIN 282
              
Sbjct: 435 VAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 2e-24
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 19/236 (8%)

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
                  + D L      L   ++ FN +  +    F +   L  + L   +I ++ + +
Sbjct: 15  MELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
              L+ L+ L L+ N +    L    GL  L+ +      +            +  +  +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTL 126

Query: 175 FELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISH 228
            EL + HN I+   L      +  L  LDLS NK+++I   D   L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAIN 282
           N +  ++  +   +  L +L + +N  +   +     GL  L    L     +   
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 45/184 (24%), Positives = 67/184 (36%), Gaps = 32/184 (17%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           +          +  +L        L LS N L             L+ +DLS  +I    
Sbjct: 11  TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-- 66

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                                   IE  DGA   +  LS L L+ N +++++   F GL 
Sbjct: 67  ------------------------IE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNN 277
           SL+ L      L +LE      L  L+EL V+HN +      + F  L  L   DL+ N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 278 IKAI 281
           I++I
Sbjct: 161 IQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYAN 57
            L +L +L +++   +    G    LS L++L +  N  +   LP        L  L  +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 58  NNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSL 115
             ++  L       L+ LQV NM  N    +    ++ L++L  +    N I +     L
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 116 SGL-TKLAYLYLSHNQL--TEFLLDDIRGLKRLRTVDLSYNKI 155
               + LA+L L+ N    T      ++ +K  R + +   ++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  137 bits (347), Expect = 3e-37
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 9/238 (3%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
              +L  L L +N + ++E     +L  L+ L +  N L  L S   +  S L  L    
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 59  NRITSL--DGLLRGLTKLQVFNMDFN-QITMVRRDEFQNLHNLDSISLQNNQITS-MNSS 114
           N   +L    L   LTKLQ+  +      T ++R +F  L  L+ + +  + + S    S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
           L  +  +++L L   Q    L   +     +  ++L    ++ F        +   +   
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 175 FELK---LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
           F  +   +    +  +   L  I GL  L+ S N+L+++    F  L SL+ + +  N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  136 bits (345), Expect = 7e-37
 Identities = 59/290 (20%), Positives = 121/290 (41%), Gaps = 27/290 (9%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L ++PS +     + SL  +NNRIT + +  L+    LQ   +  N I  +  D F +
Sbjct: 41  GSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

Query: 95  LHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSY 152
           L +L+ + L  N +++++SS    L+ L +L L  N         +   L +L+ + +  
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS 211
              + F           G+T + EL++  +++++    +L  I  +S L L   +   + 
Sbjct: 159 M--DTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 212 PDDFIGLDSLKMLDISHNLLTTLEET--------SKTFLPALEELFVSHNSLTRLDKDFH 263
                   S++ L++    L T   +        S         + ++  SL ++ K  +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 264 GLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPVLCD 312
            +  L + + + N +K++           IF   ++L+ I+L  NP  C 
Sbjct: 275 QISGLLELEFSRNQLKSV--------PDGIFDRLTSLQKIWLHTNPWDCS 316

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (356), Expect = 9e-37
 Identities = 57/306 (18%), Positives = 109/306 (35%), Gaps = 32/306 (10%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
           +  L  L    N+L+      G+  KL  L +  NQ+  +P++      Q+ +L   +N+
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 61  ITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQ-------NLHNLDSISLQNNQITSM 111
           +  +      + ++ +   +  +N+I  V    F           N+ SI+L NNQI+  
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 112 -NSSLSGLTKLAYLYLSHNQLTEF-------LLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
                S  + L+ + L  N LTE          ++ +    L ++DL +NK+    T+  
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL----TKLS 504

Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL------DLSHNKLRTISPDDFIG 217
              +   +  +  + L +N         +    L         D   N+     P+    
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN 276
             SL  L I  N +  + E      P +  L +  N    +D              L ++
Sbjct: 565 CPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 277 NIKAIN 282
             + I 
Sbjct: 622 KTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (355), Expect = 1e-36
 Identities = 66/310 (21%), Positives = 123/310 (39%), Gaps = 26/310 (8%)

Query: 1   GLTDLNWLFL-NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP---------SDIQLFSQ 50
            L DL  + + N   L  L   L  L ++QL+ +  N+  +           +D  +  +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 51  LGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
           +  +Y   N + +   +  L+ + KL +    +NQ+       F +   L S++L  NQI
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQI 365

Query: 109 TSMNSSLSG-LTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK- 165
           T + ++  G   ++  L  +HN+L     + D + +  +  +D SYN+I     +N    
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 166 -NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-------PDDFI 216
                   N+  + L +N+I             LS ++L  N L  I         ++F 
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 217 GLDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
               L  +D+  N LT L ++   T LP L  + +S+NS ++          L    + +
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545

Query: 276 NNIKAINIQL 285
                 N  L
Sbjct: 546 QRDAQGNRTL 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (320), Expect = 6e-32
 Identities = 49/326 (15%), Positives = 107/326 (32%), Gaps = 29/326 (8%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
                 +   +N +  +   +  L+KL+   +  +   A    I    +  +        
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQ-Y 238

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
            + D     L  L    +             + L  +  I++  N+  S           
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 113 SSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
           +      K+  +Y+ +N L  F +   ++ +K+L  ++  YN++   G            
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE--GKLPA----FGSE 352

Query: 172 TNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHN 229
             +  L L +N+I  +     G    +  L  +HNKL+ I        +  +  +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 230 LLTTLEETSKTFLPA-------LEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
            + +++  +   L         +  + +S+N +++  K+ F     L   +L  N +  I
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 282 NIQLALKTQCQIFGLNSTLRIYLEGN 307
                               I L  N
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 41/343 (11%), Positives = 105/343 (30%), Gaps = 45/343 (13%)

Query: 2   LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---- 56
              +  L L        +   +G L++L++L +  +  + +   +     + +  +    
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMSDEQK 138

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMVR-----RDEFQNLHNLDSISLQNNQITSM 111
              R+      +    +    ++  + I         +   +       I   +N IT +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 112 NSSLSGLTKLAYLYLSHNQLTEF------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
           + ++  LTKL   Y+ ++             ++    ++ +T DL ++ +          
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 166 NQVQGV--------TNIFELKLQHNEIENLDGALMGIHGLS---------RLDLSHNKLR 208
                           +  + +  N   + +        L+          + + +N L+
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 209 TISPDDFIG-LDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKD-FHGL 265
           T   +  +  +  L ML+  +N L              L  L +++N +T +  +     
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS--EIKLASLNLAYNQITEIPANFCGFT 376

Query: 266 PVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
             +     AHN +K I              ++    I    N 
Sbjct: 377 EQVENLSFAHNKLKYIPNIF------DAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 33/243 (13%)

Query: 2   LTDLNWLFLNNNRLKSLEG--------QLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLG 52
           ++ ++ +  + N + S++G               +  + +  NQ+   P ++    S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 53  SLYANNNRITSL--------DGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISL 103
           S+    N +T +        +   +    L   ++ FN++T +  D     L  L  I L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 104 QNNQITSMNSSLSGLTKLAYLYLSH------NQLTEFLLDDIRGLKRLRTVDLSYNKINK 157
             N  +   +     + L    + +      N+      + I     L  + +  N I K
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI 216
                      +   NI  L ++ N   ++D   +          L ++K + I   D +
Sbjct: 581 V--------NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

Query: 217 GLD 219
            + 
Sbjct: 633 DIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 18/190 (9%), Positives = 51/190 (26%), Gaps = 14/190 (7%)

Query: 94  NLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTV 148
           +   +  +SL+    +  +  ++  LT+L  L L  +        F    I         
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIH-GLSRLDLSHNKL 207
                   K     + +      +++ +  +  +  +        I    +++    N +
Sbjct: 139 QKMRMHYQKTFVDYDPRED---FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPV 267
             +     + L  L+   + ++                E            D  +  L  
Sbjct: 196 TFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKD 250

Query: 268 LCKADLAHNN 277
           L   ++ +  
Sbjct: 251 LTDVEVYNCP 260

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 5/146 (3%)

Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
           SL+   ++  L L     +  + D I  L  L  + L  +   K   R  G   +    +
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-KVNERLFGPKGISANMS 134

Query: 174 IFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
             + +      +              L +  ++ +  +               +    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 231 LTTLEETSKTFLPALEELFVSHNSLT 256
           +T + +     L  L + ++ ++   
Sbjct: 195 ITFVSKAVMR-LTKLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 9/123 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-------LEALPSDIQLFSQLGS 53
            L  L  + L+ N       Q    S L+   I   +       L   P  I L   L  
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 54  LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 113
           L   +N I  ++  +     + V ++  N    +               L  ++   +  
Sbjct: 571 LQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

Query: 114 SLS 116
             +
Sbjct: 629 CDA 631

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 5e-36
 Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 22/282 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT L  + +NNN++  +   L  L+ L  L +  NQ+  +   ++  + L  L  ++N 
Sbjct: 88  NLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I+ +   L GLT LQ  +       +       NL  L+ + + +N+++ + S L+ LT 
Sbjct: 146 ISDISA-LSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDI-SVLAKLTN 200

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L  ++NQ+++  +  +  L  L  + L+ N++   GT       +  +TN+ +L L 
Sbjct: 201 LESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLA 251

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           +N+I NL   L G+  L+ L L  N++  ISP    GL +L  L+++ N L  +   S  
Sbjct: 252 NNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISN- 307

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
            L  L  L +  N+++ +      L  L +    +N +  ++
Sbjct: 308 -LKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (343), Expect = 1e-35
 Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 22/285 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT+LN L L++N +  +   L  L+ LQ L       +  P  +   + L  L  ++N+
Sbjct: 132 NLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNK 188

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           ++ +  L   LT L+      NQI+ +       L NLD +SL  NQ+  +  +L+ LT 
Sbjct: 189 VSDISVL-AKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDI-GTLASLTN 244

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L L++NQ++   L  + GL +L  + L  N+I+         + + G+T +  L+L 
Sbjct: 245 LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI-------SPLAGLTALTNLELN 295

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N++E++   +  +  L+ L L  N +  ISP     L  L+ L   +N ++ +   +  
Sbjct: 296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLAN- 351

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
            L  +  L   HN ++ L      L  + +  L         +  
Sbjct: 352 -LTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNY 394

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 6e-35
 Identities = 76/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  +  L  +   +KS++G +  L+ L  +    NQL  +   ++  ++L  +  NNN+
Sbjct: 44  DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 101

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I  +   L  LT L    +  NQIT +  D  +NL NL+ + L +N I+ + S+LSGLT 
Sbjct: 102 IADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTS 157

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L   +       L  +  L  L  +D+S NK++           +  +TN+  L   
Sbjct: 158 LQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLESLIAT 207

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           +N+I ++   L  +  L  L L+ N+L+ I       L +L  LD+++N ++ L   S  
Sbjct: 208 NNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSG- 263

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            L  L EL +  N ++ +     GL  L   +L  N ++ I
Sbjct: 264 -LTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI 302

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 2e-34
 Identities = 68/285 (23%), Positives = 123/285 (43%), Gaps = 21/285 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           GLT L  L   N         L  L+ L+ L I  N++  +   +   + L SL A NN+
Sbjct: 154 GLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ 210

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I+ +  L   LT L   +++ NQ+  +      +L NL  + L NNQI+++ + LSGLTK
Sbjct: 211 ISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTK 266

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L L  NQ++   +  + GL  L  ++L+ N++          + +  + N+  L L 
Sbjct: 267 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI-------SPISNLKNLTYLTLY 317

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N I ++   +  +  L RL   +NK+  +S      L ++  L   HN ++ L   +  
Sbjct: 318 FNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLAN- 373

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
            L  + +L ++  + T    ++     +                +
Sbjct: 374 -LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 1e-32
 Identities = 64/281 (22%), Positives = 122/281 (43%), Gaps = 22/281 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L +     L    +         L ++  L  ++  ++++   ++  + L  +  +NN+
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 79

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +T +   L+ LTKL    M+ NQI  +      NL NL  ++L NNQIT +   L  LT 
Sbjct: 80  LTDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDI-DPLKNLTN 135

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L LS N +++  +  + GL  L+ +       +           +  +T +  L + 
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDIS 185

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N++ ++   L  +  L  L  ++N++  I+P     L +L  L ++ N L  +   +  
Sbjct: 186 SNKVSDIS-VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLAS- 241

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            L  L +L +++N ++ L     GL  L +  L  N I  I
Sbjct: 242 -LTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT++NWL   +N++  L   L  L+++  L +        P + +    + +   N   
Sbjct: 351 NLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQIT 85
                  +         ++ +N  +
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPS 434

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 3e-35
 Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 23/282 (8%)

Query: 6   NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-FSQLGSLYANNNRITSL 64
             L L    L+  E +    +   L     ++ + +    ++    +  L+     +   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 65  -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MNSSLSGLT 119
              +   L K++   ++ +++ +V     Q+L +L+ + L  N +       ++      
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 120 KLAYLYLSHNQLTEF--LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
            L  L LS N L       + +  LK L ++D+S N  +         +  Q    +  L
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM------PDSCQWPEKMRFL 415

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
            L    I  +   +     L  LD+S+N L + S      L  L+ L IS N L TL + 
Sbjct: 416 NLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDA 469

Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
             +  P L  + +S N L  +    F  L  L K  L  N  
Sbjct: 470 --SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 3e-34
 Identities = 61/338 (18%), Positives = 126/338 (37%), Gaps = 45/338 (13%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSK---------LQLLVIEQNQLEALPSDIQLFSQL 51
            L+ + +L L +  L   +     + +          +  V+       L   ++   +L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 52  GSLYANNNRITSLDGLLR------------GLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99
             +  ++  +  L                     ++  ++    +       +  L  + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 100 SISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDD---IRGLKRLRTVDLSYNKI 155
            I+++N+++  +  S    L  L +L LS N + E  L +         L+T+ LS N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
                  +    +  + N+  L +  N    +  +      +  L+LS   +R +     
Sbjct: 374 RSM---QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
               +L++LD+S+N L +       FLP L+EL++S N L  L       PVL    ++ 
Sbjct: 431 ---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISR 482

Query: 276 NNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPVLCD 312
           N +K++           IF   ++L+ I+L  NP  C 
Sbjct: 483 NQLKSVPDG--------IFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (330), Expect = 1e-33
 Identities = 59/329 (17%), Positives = 123/329 (37%), Gaps = 27/329 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
              +L  L L ++R+ ++E     +L  L+ L +  N L +L S      S L  L    
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 59  NRITSL--DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
           N   +L    L   LT LQ   + +    + +RR +F  L +L+ + ++   + +  + S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
           L  +  + +L L  ++    L      L  +R ++L    + +F       ++V      
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 175 FELKLQH------NEIENLDGALMGIHGLSRLDLSHNKLRTISPDD--------FIGLDS 220
              +         NE+  L   ++ +  +   D + N L   +P +         +   +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIK 279
           ++ L I    L     T  + L  ++ + V ++ +  +       L  L   DL+ N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 280 AINIQLALKTQCQIFGLNSTLR-IYLEGN 307
              ++          G   +L+ + L  N
Sbjct: 348 EEYLK-----NSACKGAWPSLQTLVLSQN 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (321), Expect = 2e-32
 Identities = 44/305 (14%), Positives = 106/305 (34%), Gaps = 24/305 (7%)

Query: 1   GLTDLNWLFL-NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYAN 57
            LT+L  L + N      +       L+ L  L I+   L    S  ++    +  L  +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ--------- 107
            +    L +     L+ ++   +    +   +            +     +         
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 108 --ITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGTRN 162
             +  +   +  L+++ +   + N L +F     D +  L ++ TV +    I +F    
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 163 EGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGL 218
           +       +  +  + ++++++  +       +  L  LDLS N +      +       
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 219 DSLKMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
            SL+ L +S N L ++++T +    L  L  L +S N+   +         +   +L+  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

Query: 277 NIKAI 281
            I+ +
Sbjct: 421 GIRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 8e-29
 Identities = 45/306 (14%), Positives = 109/306 (35%), Gaps = 31/306 (10%)

Query: 2   LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
              +  L L+ N++  +  G L   + LQ+L+++ +++  +  D       L  L  ++N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSM--NSSL 115
            ++SL       L+ L+  N+  N    +     F NL NL ++ + N +  S       
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           +GLT L  L +    L  +    ++ ++ +  + L  ++          +     ++++ 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-----LEIFADILSSVR 199

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL------------- 221
            L+L+   +       L      S +     +   ++ + F  L  L             
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 222 -----KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAH 275
                 + D + +    + E  K     +  L +    L       +  L  + +  + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 276 NNIKAI 281
           + +  +
Sbjct: 320 SKVFLV 325

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 1e-28
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 49  SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
              G     +   TS+  GL   +  L   ++ FN+IT +   + +   NL  + L++++
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 108 ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
           I ++   +   L  L +L LS N L+         L  L+ ++L  N     G  +    
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL--- 118

Query: 167 QVQGVTNIFELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
               +TN+  L++ +      +      G+  L+ L++    LR         +  +  L
Sbjct: 119 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAI 281
            +  +    L E     L ++  L +   +L R          V             +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (289), Expect = 5e-28
 Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 18/279 (6%)

Query: 10  LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
             +    S+   L   + ++ L +  N++  +   D++  + L  L   ++RI +++   
Sbjct: 12  GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLY 125
              L  L+  ++  N ++ +    F  L +L  ++L  N   ++   S    LT L  L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 126 LSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
           + +    +E    D  GL  L  +++    +  +         ++ + +I  L L  +E 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-----QSQSLKSIRDIHHLTLHLSES 184

Query: 185 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
             L +     +  +  L+L    L           +    +       + L + S   L 
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
            L    +  + +      F    +    D   +    ++
Sbjct: 245 KLLRYILELSEVE-----FDDCTLNGLGDFNPSESDVVS 278

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 5e-35
 Identities = 50/260 (19%), Positives = 108/260 (41%), Gaps = 14/260 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT+++   L +  ++ ++         Q L +   +    P+       L  L   +N+
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNK 336

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSGL 118
             +    +  L  L+  ++  N ++             +L  + L  N + +M+S+  GL
Sbjct: 337 GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
            +L +L   H+ L +         L+ L  +D+S+                 G++++  L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-----NGIFNGLSSLEVL 450

Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           K+  N  +   L      +  L+ LDLS  +L  +SP  F  L SL++L+++ N L ++ 
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 236 ETSKTFLPALEELFVSHNSL 255
           +     L +L+++++  N  
Sbjct: 511 DGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 1e-32
 Identities = 60/288 (20%), Positives = 103/288 (35%), Gaps = 20/288 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGT----LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA 56
           GL +L         L      +      L+ +    +    +E +  D         L  
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLEL 311

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM---NS 113
            N +      L   L  L+      N+          +L +L+ + L  N ++     + 
Sbjct: 312 VNCKFGQFPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
           S  G T L YL LS N +   +  +  GL++L  +D  ++ + +    +        + N
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRN 422

Query: 174 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLL 231
           +  L + H       +G   G+  L  L ++ N       PD F  L +L  LD+S   L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 232 TTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
             L  T+   L +L+ L ++ N L  +    F  L  L K  L  N  
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (320), Expect = 3e-32
 Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 27/294 (9%)

Query: 5   LNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYANN 58
           L+ L L NN      ++  +  L+ L++  +   +     +    D      L +L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 59  NRITSLD-------GLLRGLTKLQVFNMDFNQITMVRRDEFQ-NLHNLDSISLQNNQITS 110
            R+  LD        L   LT +  F++    I  V+   +     +L+ ++ +  Q  +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 111 MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG 170
           +      L  L  L  + N+           L  L  +DLS N ++  G  +       G
Sbjct: 322 LK-----LKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCS---QSDFG 371

Query: 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHN 229
            T++  L L  N +  +    +G+  L  LD  H+ L+ +S    F+ L +L  LDISH 
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAI 281
                       L +LE L ++ NS     L   F  L  L   DL+   ++ +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 2e-31
 Identities = 68/343 (19%), Positives = 121/343 (35%), Gaps = 46/343 (13%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
            L+ L+ L L  N ++SL  G    LS LQ LV  +  L +L +  I     L  L   +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 59  NRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
           N I S         LT L+  ++  N+I  +   + + LH +     S+ L  N +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKI---NKFGTRNEGKNQV 168
                  +L  L L +N  +  ++   I+GL  L    L   +          ++   + 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 169 QGVTNIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDF----------- 215
                I E +L + +   +++      +  +S   L    +  +    +           
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 216 --------IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD---KDFHG 264
                   + L SLK L  + N        S+  LP+LE L +S N L+      +   G
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 265 LPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN 307
              L   DL+ N +  +             GL     +  + +
Sbjct: 372 TTSLKYLDLSFNGVITM--------SSNFLGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 6e-31
 Identities = 75/362 (20%), Positives = 125/362 (34%), Gaps = 63/362 (17%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNR 60
                L L+ N L+ L      +  +LQ+L + + +++ +     Q  S L +L    N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
           I SL  G   GL+ LQ        +  +      +L  L  +++ +N I S       S 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINK---------------- 157
           LT L +L LS N++      D+R L ++     ++DLS N +N                 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 158 ---FGTRNEGKNQVQGVTNIFELKLQHNEIENL-------DGALMGIHGLSRLDLSHNKL 207
              F + N  K  +QG+  +   +L   E  N          AL G+  L+  +     L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 208 RTIS---PDDFIGLDSLKMLDISHNLLTTLEETSKTF-------------------LPAL 245
                   D F  L ++    +    +  +++ S  F                   L +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 246 EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE 305
           + L  + N           LP L   DL+ N +               FG  S   + L 
Sbjct: 328 KRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGC-----CSQSDFGTTSLKYLDLS 381

Query: 306 GN 307
            N
Sbjct: 382 FN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (306), Expect = 3e-30
 Identities = 60/301 (19%), Positives = 111/301 (36%), Gaps = 31/301 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGS 53
            L  L  L + +N ++S +       L+ L+ L +  N+++++         Q+     S
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 54  LYANNNRITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSISLQNNQITSMN 112
           L  + N +  +        +L    +  N  ++ V +   Q L  L+   L   +  +  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 113 -------SSLSGLTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYNKINKFGTRN 162
                  S+L GL  L         L  +L D I     L  + +  L    I +     
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---- 297

Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
                         L+L + +        + +  L RL  + NK         + L SL+
Sbjct: 298 ---KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350

Query: 223 MLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA 280
            LD+S N L+     S++     +L+ L +S N +  +  +F GL  L   D  H+N+K 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 281 I 281
           +
Sbjct: 411 M 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (305), Expect = 3e-30
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 23/262 (8%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
                +P ++       +L  + N +  L         +LQV ++   +I  +    +Q+
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 95  LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           L +L ++ L  N I S+   + SGL+ L  L      L       I  LK L+ +++++N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLR 208
            I  F            +TN+  L L  N+I+++    L  +H +      LDLS N + 
Sbjct: 135 LIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 209 TISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPALEEL------FVSHNSLTRLDKD 261
            I P  F  +  L  L + +N  +  + +T    L  LE        F +  +L + DK 
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 262 FHGLPVLCKADLAHNNIKAINI 283
              L  LC   +    +  ++ 
Sbjct: 250 A--LEGLCNLTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (292), Expect = 2e-28
 Identities = 64/297 (21%), Positives = 100/297 (33%), Gaps = 35/297 (11%)

Query: 5   LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---------Y 55
              L L+ N +  ++       +L  L +  N    L         L  L         +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 56  ANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDE---FQNLHNLDSISLQNNQITSM 111
            N   +   D   L GL  L +       +     D    F  L N+ S SL +  I  +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 112 N--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
              S   G   L  +     Q           LK L+ +  + NK     +         
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSE-------V 344

Query: 170 GVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
            + ++  L L  N +        +  G   L  LDLS N + T+   +F+GL+ L+ LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDF 403

Query: 227 SHNLLTTLEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
            H+ L  + E S    L  L  L +SH          F+GL  L    +A N+ +  
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 3e-23
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 5/161 (3%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLYANN 58
           G T L +L L+ N + ++      L +L+ L  + + L+ +           L  L  ++
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
                  +G+  GL+ L+V  M  N        D F  L NL  + L   Q+  +  ++ 
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           + L+ L  L ++ NQL          L  L+ + L  N  +
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 32/184 (17%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           +          +  +L        L LS N L             L+ +DLS  +I    
Sbjct: 11  TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                                       DGA   +  LS L L+ N +++++   F GL 
Sbjct: 69  ----------------------------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNN 277
           SL+ L      L +LE      L  L+EL V+HN +      + F  L  L   DL+ N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 278 IKAI 281
           I++I
Sbjct: 161 IQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  121 bits (305), Expect = 7e-32
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 36/235 (15%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
                L L+ N L+ L      +  +LQ+L + + +++ +      +  L     L    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTG 85

Query: 59  NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSL 115
           N I SL  G   GL+ LQ        +  +      +L  L  +++ +N I S  +    
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           S LT L +L LS N++      D+R L ++  ++L                         
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------------------------- 180

Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
            L L  N +  +  GA   I  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  115 bits (291), Expect = 8e-30
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 14/223 (6%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
              +P ++       +L  + N +  L         +LQV ++   +I  +    +Q+L 
Sbjct: 19  FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 97  NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
           +L ++ L  N I S+     SGL+ L  L      L       I  LK L+ +++++N I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGL----SRLDLSHNKLRTI 210
             F    +       +TN+  L L  N+I+++    L  +H +      LDLS N +  I
Sbjct: 137 QSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
            P  F  +  LK L +  N L ++ +     L +L+++++  N
Sbjct: 193 QPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
            L+ L+ L L  N ++SL  G    LS LQ LV  +  L +L +        L  L   +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 59  NRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
           N I S         LT L+  ++  N+I  +   + + LH +     S+ L  N +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
                  +L  L L  NQL          L  L+ + L  N
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLS 203
            + +DLS+N +   G+             +  L L   EI+ + DGA   +  LS L L+
Sbjct: 30  TKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-- 261
            N +++++   F GL SL+ L      L +LE      L  L+EL V+HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 262 FHGLPVLCKADLAHNNIKAI 281
           F  L  L   DL+ N I++I
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
           S K LD+S N L  L   S    P L+ L +S   +  ++   +  L  L    L  N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 279 KAI 281
           +++
Sbjct: 89  QSL 91

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (312), Expect = 5e-31
 Identities = 76/284 (26%), Positives = 115/284 (40%), Gaps = 40/284 (14%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
              +  L + +N L SL      L  L++     NQL +LP    L   L  L   +N +
Sbjct: 60  PAHITTLVIPDNNLTSLPALPPELRTLEV---SGNQLTSLP---VLPPGLLELSIFSNPL 113

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T L  L  GL KL +F    NQ+T +       L  L    + +NQ+ S+ +  S L K 
Sbjct: 114 THLPALPSGLCKLWIFG---NQLTSL-PVLPPGLQELS---VSDNQLASLPALPSELCK- 165

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
             L+  +NQLT  L     GL+ L    +S N++    T           + +++L   +
Sbjct: 166 --LWAYNNQLTS-LPMLPSGLQEL---SVSDNQLASLPT---------LPSELYKLWAYN 210

Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
           N + +L        GL  L +S N+L ++          LK L +S N LT+L       
Sbjct: 211 NRLTSLPA---LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML---- 259

Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
              L  L V  N LTRL +    L      +L  N +    +Q 
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 1e-29
 Identities = 69/328 (21%), Positives = 112/328 (34%), Gaps = 41/328 (12%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
             +L  L ++ N+L SL      L +L +       L ALP      S L  L+   N++
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           TSL  L  GL +L V +     +          L  L      NNQ+TS+    SGL + 
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLP----ALPSELCKLW---AYNNQLTSLPMLPSGLQE- 185

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
             L +S NQL   L      L +L       N++                + + EL +  
Sbjct: 186 --LSVSDNQLAS-LPTLPSELYKL---WAYNNRLTSL---------PALPSGLKELIVSG 230

Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
           N + +L         L  L +S N+L ++          L  L +  N LT L E S   
Sbjct: 231 NRLTSLPVL---PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIH 282

Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
           L +   + +  N L+           +  A      I   ++  A   + +   L+    
Sbjct: 283 LSSETTVNLEGNPLSERTLQALRE--ITSAPGYSGPIIRFDMAGASAPR-ETRALHLAAA 339

Query: 302 IYLEGNPVLCDDSMRAVIDAMETINNNT 329
            +L       + +           +N  
Sbjct: 340 DWLVPAR-EGEPAPADRWHMFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 9e-27
 Identities = 67/298 (22%), Positives = 108/298 (36%), Gaps = 55/298 (18%)

Query: 25  LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
            +   +L + ++ L  LP  +   + + +L   +N +TSL  L   L  L    +  NQ+
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93

Query: 85  TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL--------------TKLAYLYLSHNQ 130
           T +       L  L   S     + ++ S L  L                L  L +S NQ
Sbjct: 94  TSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152

Query: 131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGA 190
           L   L      L +L       N++                + + EL +  N++ +L   
Sbjct: 153 LAS-LPALPSELCKL---WAYNNQLTSLPM---------LPSGLQELSVSDNQLASLPT- 198

Query: 191 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV 250
                 L +L   +N+L ++          LK L +S N LT+L          L+EL V
Sbjct: 199 --LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPV----LPSELKELMV 248

Query: 251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
           S N LT L     GL  L    +  N +  +           +  L+S   + LEGNP
Sbjct: 249 SGNRLTSLPMLPSGLLSL---SVYRNQLTRL--------PESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 2e-23
 Identities = 46/251 (18%), Positives = 89/251 (35%), Gaps = 40/251 (15%)

Query: 34  EQNQLEALPSDIQ--LFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRD 90
           E     A+   ++  L +    L    + +T+L D L   +T L + + +   +      
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP----A 78

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
               L  L+   +  NQ+TS+     GL +L+        L             L  + +
Sbjct: 79  LPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWI 128

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
             N++                  + EL +  N++ +L         L +L   +N+L ++
Sbjct: 129 FGNQLTSLPV---------LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
                     L+ L +S N L +L          L +L+  +N LT L     GL  L  
Sbjct: 177 PML----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPALPSGLKEL-- 226

Query: 271 ADLAHNNIKAI 281
             ++ N + ++
Sbjct: 227 -IVSGNRLTSL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 3e-14
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
             ++L  L+  NNRL SL      L +L +     N+L +LP      S+L  L  + NR
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIV---SGNRLTSLPVLP---SELKELMVSGNR 252

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +TSL  L  GL  L V+    NQ+T +  +   +L +  +++L+ N ++          +
Sbjct: 253 LTSLPMLPSGLLSLSVYR---NQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL--RE 306

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
           +         +  F +      +  R + L+
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  117 bits (296), Expect = 2e-30
 Identities = 47/248 (18%), Positives = 101/248 (40%), Gaps = 18/248 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L +   +    + +         L  +  L      +  +   +Q  + L  L   +N+
Sbjct: 17  ALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ 74

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           IT L   L+ LTK+    +  N +  V       L ++ ++ L + QIT + + L+GL+ 
Sbjct: 75  ITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TPLAGLSN 130

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  LYL  NQ+T   +  + GL  L+ + +   +++           +  ++ +  LK  
Sbjct: 131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL-------TPLANLSKLTTLKAD 181

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
            N+I ++   L  +  L  + L +N++  +SP       +L ++ +++  +T        
Sbjct: 182 DNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 241 FLPALEEL 248
            L     +
Sbjct: 239 NLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  113 bits (285), Expect = 8e-29
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 19/236 (8%)

Query: 48  FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
            +    + A  + +T        L  +   +     +T +  +  Q L+NL  + L++NQ
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
           IT + + L  LTK+  L LS N L    +  I GL+ ++T+DL+  +I            
Sbjct: 75  ITDL-APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TP 124

Query: 168 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
           + G++N+  L L  N+I N+   L G+  L  L + + ++  ++P     L  L  L   
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283
            N ++ +   +   LP L E+ + +N ++ +         L    L +  I    +
Sbjct: 182 DNKISDISPLAS--LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (273), Expect = 4e-27
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 16/238 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  +  L      + ++EG +  L+ L  L ++ NQ+  L     L +++  L  + N 
Sbjct: 39  DLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNL-TKITELELSGNP 96

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           + ++  +  GL  ++  ++   QIT V       L NL  + L  NQIT++ S L+GLT 
Sbjct: 97  LKNVSAI-AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTN 152

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L YL + + Q+++  L  +  L +L T+    NKI+         + +  + N+ E+ L+
Sbjct: 153 LQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDI-------SPLASLPNLIEVHLK 203

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
           +N+I ++   L     L  + L++  +          L    ++             S
Sbjct: 204 NNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
            L N   I+   + +T    + + L  +  L      +T   ++ ++ L  L  ++L  N
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
           +I            ++ +T I EL+L  N ++N+   + G+  +  LDL+  ++  ++P 
Sbjct: 74  QITDL-------APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
              GL +L++L +  N +T +   +   L  L+ L + +  ++ L      L  L     
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAG--LTNLQYLSIGNAQVSDLT-PLANLSKLTTLKA 180

Query: 274 AHNNIKAI 281
             N I  I
Sbjct: 181 DDNKISDI 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           GLT+L +L + N ++  L   L  LSKL  L  + N++  + S +     L  ++  NN+
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQ 206

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
           I+ +  L    + L +  +    IT        NL   + +   +    +  +     T
Sbjct: 207 ISDVSPL-ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  116 bits (293), Expect = 4e-30
 Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 18/252 (7%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
                  +K +       ++     +++  +          + +  + ANN+ I S+ G+
Sbjct: 7   TITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGI 64

Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
            + L  +    ++ N++T +      NL NL  + L  N++  + SSL  L KL  L L 
Sbjct: 65  -QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
           HN +++  ++ +  L +L ++ L  NKI            +  +T +  L L+ N+I ++
Sbjct: 121 HNGISD--INGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDI 171

Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
              L G+  L  L LS N +  +      GL +L +L++            ++ L     
Sbjct: 172 VP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 248 LFVSHNSLTRLD 259
           +  +  SL   +
Sbjct: 229 VKNTDGSLVTPE 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  111 bits (279), Expect = 5e-28
 Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 16/238 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
              +     L    +         L+ +  ++   + ++++   IQ    +  L+ N N+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK 79

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +T +  L   L  L    +D N++  +     ++L  L S+SL++N I+ + + L  L +
Sbjct: 80  LTDIKPL-ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 135

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  LYL +N++T+  +  +  L +L T+ L  N+I+           + G+T +  L L 
Sbjct: 136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-------VPLAGLTKLQNLYLS 186

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
            N I +L   L G+  L  L+L   +      +    L     +  +   L T E  S
Sbjct: 187 KNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  108 bits (272), Expect = 4e-27
 Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 18/242 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  ++ +  NN+ +KS++G +  L  +  L +  N+L  +     L   LG L+ + N+
Sbjct: 44  ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENK 101

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +  L  L + L KL+  +++ N I+ +  +   +L  L+S+ L NN+IT + + LS LTK
Sbjct: 102 VKDLSSL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTK 157

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L L  NQ+++  +  + GL +L+ + LS N I+           + G+ N+  L+L 
Sbjct: 158 LDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL-------RALAGLKNLDVLELF 208

Query: 181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             E  N        +   + +  +   L  ++P+        +  ++  +L     E S 
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 266

Query: 240 TF 241
            F
Sbjct: 267 IF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  104 bits (261), Expect = 1e-25
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 19/232 (8%)

Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
            +     ++ + SD    ++          +T        L  +     + + I  V   
Sbjct: 7   TITVPTPIKQIFSDDAF-AETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV--Q 62

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             Q L N+  + L  N++T +   L+ L  L +L+L  N++ +  L  ++ LK+L+++ L
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSL 119

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
            +N I+         N +  +  +  L L +N+I ++   L  +  L  L L  N++  I
Sbjct: 120 EHNGISDI-------NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI 171

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF 262
            P    GL  L+ L +S N ++ L   +   L  L+ L +          + 
Sbjct: 172 VP--LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECLNKPINH 219

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  118 bits (298), Expect = 1e-29
 Identities = 74/388 (19%), Positives = 136/388 (35%), Gaps = 42/388 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT L +L  + N+L  L+  +     L  L   +N L  +  D+   +QL  L  + N+
Sbjct: 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNK 159

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
             +   +    T+L   +  FN+IT +   +      L+ ++   N IT ++  L+   +
Sbjct: 160 KITKLDV-TPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLD--LNQNIQ 213

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L +L  S N+LTE    D+  L +L   D S N + +          V  ++ +  L   
Sbjct: 214 LTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTEL--------DVSTLSKLTTLHCI 262

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
             ++  +D  L     L        +   I   D      L +LD     +T L+ +   
Sbjct: 263 QTDLLEID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQ-- 316

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
             P L  L++++  LT L  D      L      + +I+  +          +  + +  
Sbjct: 317 -NPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFS---------SVGKIPALN 364

Query: 301 RIYLEGNPVLCDDSMRAVIDAMETINNNTKI---HGETICQPDSNETSTTTTTTTTTTPE 357
             +      +         +++    +   +         +P         T T T    
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424

Query: 358 PTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
            T  P  T T  S       T TTP + 
Sbjct: 425 STDNPAVTYTFTSENGAIVGTVTTPFEA 452

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 5e-29
 Identities = 69/306 (22%), Positives = 110/306 (35%), Gaps = 29/306 (9%)

Query: 6   NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 65
           + +        +       L+ L  L    + +  +   I+  + L  L   +N IT+LD
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD 80

Query: 66  GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 125
             L   T L     D N++T +   +   L  L  ++   N++T ++  +S    L YL 
Sbjct: 81  --LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133

Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
            + N LTE    D+    +L  +D   NK             V   T +  L    N+I 
Sbjct: 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKIT 183

Query: 186 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL 245
            LD  +     L+RL+   N +  +   D      L  LD S N LT ++ T    L  L
Sbjct: 184 ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTP---LTQL 235

Query: 246 EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI-QLALKTQCQIFGLNSTLRIYL 304
                S N LT L  D   L  L        ++  I++         Q  G      + +
Sbjct: 236 TYFDCSVNPLTEL--DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293

Query: 305 EGNPVL 310
             N  L
Sbjct: 294 THNTQL 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (278), Expect = 6e-27
 Identities = 56/302 (18%), Positives = 101/302 (33%), Gaps = 47/302 (15%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT L  L   +N + +L+  L   + L  L  + N+L  L   +   ++L  L  + N+
Sbjct: 62  KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMV-------------------RRDEFQNLHNLDSI 101
           +T LD  +     L   N   N +T +                    + +      L ++
Sbjct: 118 LTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

Query: 102 SLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 161
               N+IT ++  +S    L  L    N +T+    D+    +L  +D S NK+ +    
Sbjct: 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI--- 227

Query: 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
                 V  +T +       N +  LD  +  +  L+ L      L  I   D      L
Sbjct: 228 -----DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQL 277

Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
                         + +      L  L      +T L  D    P L    L +  +  +
Sbjct: 278 IYFQAEGCRKIKELDVTH--NTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTEL 333

Query: 282 NI 283
           ++
Sbjct: 334 DV 335

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 8e-23
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 26/236 (11%)

Query: 48  FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
           F+   +         ++      L  L   +   + IT +     + L  L  +   +N 
Sbjct: 20  FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
           IT+++  LS  T L YL    N+LT     D+  L +L  ++   NK+ K          
Sbjct: 76  ITTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL--------D 122

Query: 168 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
           V     +  L    N +  +D  +     L+ LD   NK   I+  D      L  LD S
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCS 178

Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283
            N +T L+ +       L  L    N++T+L  D +    L   D + N +  I++
Sbjct: 179 FNKITELDVSQ---NKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEIDV 229

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  111 bits (280), Expect = 9e-28
 Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NS 113
             +++T +   L R   +L        ++ ++++  F    +L+ I +  N +  +    
Sbjct: 17  QESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 114 SLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
             S L KL  + +   N L     +  + L  L+ + +S   I      +          
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-----KIHSL 128

Query: 173 NIFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
               L +Q N  I  +   + +G+   S  L L+ N ++ I    F G    ++    +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
            L  L             L +S   +  L       L  L        N+K +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  106 bits (265), Expect = 9e-26
 Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 22/238 (9%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ-LEALPSDIQLFSQLGSL----YA 56
            +   L     +L+ + +G       L+ + I QN  LE + +D+  FS L  L      
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRIE 87

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSM-NS 113
             N +  +     + L  LQ   +    I  +      +      + +Q N  I ++  +
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 114 SLSGLT-KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
           S  GL+ +   L+L+ N + E       G +         N + +        +   G +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-----PNDVFHGAS 202

Query: 173 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
               L +    I +L    L  +  L      + K           L +L    +++ 
Sbjct: 203 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 88.7 bits (220), Expect = 9e-20
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 7/161 (4%)

Query: 1   GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS-QLGSLY-A 56
            L  L+ + +   N L  +       L  LQ L+I    ++ LP   ++ S Q   L   
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 57  NNNRITSL-DGLLRGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NS 113
           +N  I ++      GL+ +  +  ++ N I  +    F      +     NN +  + N 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
              G +    L +S  ++       +  LK+LR       K
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN-QLEALPSDI--QLFSQLGSLYA 56
            L +L +L ++N  +K L +       +  LL I+ N  +  +  +    L  +   L+ 
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
           N N I  + +    G    ++   D N +  +  D F        + +   +I S+ +  
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           L  L KL      + +     L  +  L  L    L+Y 
Sbjct: 222 LENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  110 bits (277), Expect = 9e-28
 Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 24/303 (7%)

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           E   + +   ++     +T++   L   T    L+LS N L  F L  +    RL  ++L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
              ++ K             +  +  L L HN++++L      +  L+ LD+S N+L ++
Sbjct: 63  DRAELTKLQVDG-------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLC 269
                 GL  L+ L +  N L TL     T  P LE+L +++N+LT L     +GL  L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 270 KADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT 329
              L  N++  I            FG +     +L GNP LC+  +         + +N 
Sbjct: 176 TLLLQENSLYTI--------PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW---LQDNA 224

Query: 330 KIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTE 389
           +         D    ++   +      +  P             T      T + + Y E
Sbjct: 225 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGK---GCPTLGDEGDTDLYDYYPE 281

Query: 390 TIT 392
             T
Sbjct: 282 EDT 284

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  110 bits (276), Expect = 9e-28
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
            D   L L+ N L +     L   ++L  L +++ +L  L  D  L   LG+L  ++N++
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQL 89

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
            SL  L + L  L V ++ FN++T +     + L  L  + L+ N++ ++    L+   K
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
           L  L L++N LTE     + GL+ L T+ L  N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  104 bits (262), Expect = 8e-26
 Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 38/222 (17%)

Query: 35  QNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQ 93
           +  L ALP D+        L+ + N + +     L   T+L   N+D  ++T +      
Sbjct: 19  KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDG 74

Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
            L  L ++ L +NQ+ S+      L  L  L +S N+LT   L  +RGL  L+       
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ------- 127

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
                                 EL L+ NE++ L  G L     L +L L++N L  +  
Sbjct: 128 ----------------------ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTF-LPALEELFVSHN 253
               GL++L  L +  N L T+ +    F    L   F+  N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  102 bits (257), Expect = 4e-25
 Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
             T L  L L+   L  L+   GTL  L  L +  NQL++LP   Q    L  L  + NR
Sbjct: 53  PYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
           +TSL  G LRGL +LQ   +  N++  +          L+ +SL NN +T +    L+GL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
             L  L L  N L   +     G   L    L  N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 2e-27
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 31/284 (10%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
             +          +     +     +   L +    L +LP        L SL A+ N +
Sbjct: 47  ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSL 103

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           T L  L + L  L V N +   ++            L+ + + NNQ+  +   L   + L
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEKL-PELQNSSFL 155

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
             + + +N L +           L  +    N++ +         ++Q +  +  +   +
Sbjct: 156 KIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEEL-------PELQNLPFLTAIYADN 204

Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
           N ++ L         L  +   +N L  +   +   L  L  +   +NLL TL +     
Sbjct: 205 NSLKKLPD---LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDL---- 255

Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
            P+LE L V  N LT L +    L  L  ++   + +  +   L
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 6e-26
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 40/281 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
               L ++   NN+L+ L  +L  L  L  +  + N L+ LP        L S+ A NN 
Sbjct: 171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +  L  L + L  L     D N +  +         +L+++++++N +T +      LT 
Sbjct: 227 LEELPEL-QNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDLPELPQSLTF 281

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L       + L+E           L  ++ S N+I                 ++ EL + 
Sbjct: 282 LDVSENIFSGLSEL-------PPNLYYLNASSNEIRSL---------CDLPPSLEELNVS 325

Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
           +N++  L         L RL  S N L  +         +LK L + +N L    +    
Sbjct: 326 NNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI--- 375

Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
              ++E+L ++ + L  + +    L  L    +  N ++  
Sbjct: 376 -PESVEDLRMN-SHLAEVPELPQNLKQL---HVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (269), Expect = 1e-25
 Identities = 63/305 (20%), Positives = 110/305 (36%), Gaps = 46/305 (15%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
             + L  + ++NN LK L     +L  +       NQLE LP ++Q    L ++YA+NN 
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAA---GNNQLEELP-ELQNLPFLTAIYADNNS 206

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +  L  L   L  +   N   N +  +   E QNL  L +I   NN + ++      L  
Sbjct: 207 LKKLPDLPLSLESIVAGN---NILEEL--PELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT--------RNEGKNQVQGVT 172
           L    +  N LT+ L +  + L  L   +  ++ +++            NE ++      
Sbjct: 262 L---NVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 317

Query: 173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           ++ EL + +N++  L         L RL  S N L  +         +LK L + +N L 
Sbjct: 318 SLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLR 370

Query: 233 TLEE---------------TSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNN 277
              +                       L++L V  N L         +  L    +    
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL---RMNSER 427

Query: 278 IKAIN 282
           +    
Sbjct: 428 VVDPY 432

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 2e-23
 Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 47/272 (17%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
               L  +   NN L+ L  +L  L  L  +  + N L+ LP        L +L   +N 
Sbjct: 213 LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY 268

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           +T L  L + LT L V    F+ ++       +   NL  ++  +N+I S+      L +
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIRSLCDLPPSLEE 321

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L    +S+N+L E L      L+RL     S+N + +           +   N+ +L ++
Sbjct: 322 L---NVSNNKLIE-LPALPPRLERL---IASFNHLAEVP---------ELPQNLKQLHVE 365

Query: 181 HNEIENLDGAL----------------MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
           +N +                            L +L +  N LR          +S++ L
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDL 421

Query: 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
            ++   +    E +      LE+    H+   
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 2e-23
 Identities = 41/296 (13%), Positives = 96/296 (32%), Gaps = 47/296 (15%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
             T L     +++ L  +  +   +          ++ E            G+       
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP-------PGNGEQREMA 61

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           ++ L   L    +     ++   ++ +  +   +L +L       N +T +      L  
Sbjct: 62  VSRLRDCL--DRQAHELELNNLGLSSLP-ELPPHLESLV---ASCNSLTELPELPQSLKS 115

Query: 121 LAYLYLSHNQLTEFL---------------LDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
           L     +   L++                 L +++    L+ +D+  N + K        
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL------- 168

Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
                  ++  +   +N++E L   L  +  L+ +   +N L+ +         SL+ + 
Sbjct: 169 --PDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIV 221

Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
             +N+L  L E     LP L  ++  +N L  L      L  L   ++  N +  +
Sbjct: 222 AGNNILEELPELQN--LPFLTTIYADNNLLKTLPDLPPSLEAL---NVRDNYLTDL 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 2e-27
 Identities = 58/291 (19%), Positives = 113/291 (38%), Gaps = 25/291 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLG--SLYANN 58
            L+     +  +        +    +  Q+       L+A    ++  +Q G  +L   +
Sbjct: 31  VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
             +         L+ LQ   +D   +  +  D  Q    L++++L  N + ++ +S++ L
Sbjct: 91  VPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASL 149

Query: 119 TKLAYLYLSH-NQLTEF--------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
            +L  L +    +LTE            + +GL  L+++ L +  I            + 
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP------ASIA 203

Query: 170 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISH 228
            + N+  LK++++ +  L  A+  +  L  LDL     LR   P  F G   LK L +  
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD 262

Query: 229 -NLLTTL-EETSKTFLPALEELFVSHNS-LTRLDKDFHGLPVLCKADLAHN 276
            + L TL  +  +  L  LE+L +     L+RL      LP  C   +  +
Sbjct: 263 CSNLLTLPLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 4e-26
 Identities = 54/261 (20%), Positives = 98/261 (37%), Gaps = 30/261 (11%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
                 L L +  L     Q   LS LQ + I+   L  LP  +Q F+ L +L    N +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 62  TSLDGLLRGLTKLQVFNM-DFNQIT--------MVRRDEFQNLHNLDSISLQNNQITSMN 112
            +L   +  L +L+  ++    ++T             E Q L NL S+ L+   I S+ 
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV- 171
           +S++ L  L  L + ++ L+  L   I  L +L  +DL                 ++   
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC------------TALRNYP 246

Query: 172 ------TNIFELKLQH-NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
                   +  L L+  + +  L   +  +  L +LDL      +  P     L +  ++
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 225 DISHNLLTTLEETSKTFLPAL 245
            +  +L   L++      PA 
Sbjct: 307 LVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 6e-21
 Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 27/277 (9%)

Query: 15  LKSLEGQLGTLSKLQLLVIE-QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 73
           + S        S  + L  +    L      +    Q    Y  +               
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 74  LQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
            Q+       +       E        ++ L++  +         L+ L ++ +    L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN--------EI 184
           E L D ++    L T+ L+ N +            +  +  + EL ++           +
Sbjct: 118 E-LPDTMQQFAGLETLTLARNPLRALP------ASIASLNRLRELSIRACPELTELPEPL 170

Query: 185 ENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL-EETSKTF 241
            + D  G   G+  L  L L    +R++ P     L +LK L I ++ L+ L        
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHH-- 227

Query: 242 LPALEELFVSH-NSLTRLDKDFHGLPVLCKADLAHNN 277
           LP LEEL +    +L      F G   L +  L   +
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 47/256 (18%)

Query: 38  LEALPSDIQLFSQLGSLY-ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
           + +        S   +LY   +  +     +L    +    + +             N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSN 56

Query: 97  NLDSISLQNNQITSMNSSLSGLT--KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
           N    +     + +    L   T      L L    L +   D    L  L+ + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
           + +                        + ++          GL  L L+ N LR + P  
Sbjct: 116 LMEL----------------------PDTMQQF-------AGLETLTLARNPLRAL-PAS 145

Query: 215 FIGLDSLKMLDISH-NLLTTL--------EETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
              L+ L+ L I     LT L               L  L+ L +    +  L      L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205

Query: 266 PVLCKADLAHNNIKAI 281
             L    + ++ + A+
Sbjct: 206 QNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY-ANNN 59
           GL +L  L L    ++SL   +  L  L+ L I  + L AL   I    +L  L      
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 60  RITSLDGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSG 117
            + +   +  G   L+   + D + +  +   +   L  L+ + L+    ++ + S ++ 
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 118 LTKLAYLYLSHNQLTE 133
           L     + +  +   +
Sbjct: 300 LPANCIILVPPHLQAQ 315

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (283), Expect = 3e-27
 Identities = 60/357 (16%), Positives = 118/357 (33%), Gaps = 21/357 (5%)

Query: 28  LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 87
           +   +     ++ +      F++          +T        L  +     + + I  V
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV 58

Query: 88  RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
                Q L N+  + L  N++T +   L+ L  L +L+L  N++ +  L  ++ LK+L++
Sbjct: 59  --QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113

Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
           + L +N I+         N +  +  +  L L +N+I ++   L  +  L  L L  N++
Sbjct: 114 LSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQI 165

Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPV 267
             I P    GL  L+ L +S N ++ L   +   L  L+ L +        +K  +    
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECL--NKPINHQSN 219

Query: 268 LCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINN 327
           L   +   N   ++     +         N    +    N V         I   +   +
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

Query: 328 NTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQ 384
                        S +   T   T         AP   T Q               +
Sbjct: 280 GRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHE 336

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  108 bits (270), Expect = 1e-25
 Identities = 72/396 (18%), Positives = 141/396 (35%), Gaps = 29/396 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  ++ +  NN+ +KS++G +  L  +  L +  N+L  +   +     LG L+ + N+
Sbjct: 41  ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENK 98

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I  L   L+ L KL+  +++ N I+ +  +   +L  L+S+ L NN+IT + + LS LTK
Sbjct: 99  IKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTK 154

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L L  NQ+++  +  + GL +L+ + LS N I+           + G+ N+  L+L 
Sbjct: 155 LDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL-------RALAGLKNLDVLELF 205

Query: 181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
             E  N        +   + +  +   L   +P+        +  ++  +L     E S 
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299
            F   +           R+ +    +              + ++   +       G   T
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYT-----------VSYDVDGTVIKTKVEAGTRIT 312

Query: 300 LRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPT 359
                     +            E   N   + G         +  TT  T   T     
Sbjct: 313 APKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKY 372

Query: 360 PAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLEL 395
               +   +      + +  T         T+  E 
Sbjct: 373 IRGNAGIYKLPREDNSLKQGTLASHRCKALTVDREA 408

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  106 bits (266), Expect = 2e-26
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYA 56
            LT L  L+LN+N+L++L  G    L  L+ L +  N+L+ALP  +  F QL +   L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV--FDQLVNLAELRL 116

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
           + N++ SL   +   LTKL   ++ +N++  + +  F  L +L  + L NNQ+  +   +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
              LT+L  L L +NQL          L++L+ + L  N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  101 bits (253), Expect = 1e-24
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
            D   L L +N+L SL       L+KL+LL +  N+L+ LP+ I  +L   L +L+  +N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDN 95

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SG 117
           ++ +L  G+   L  L    +D NQ+  +    F +L  L  +SL  N++ S+   +   
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
           LT L  L L +NQL          L  L+T+ L  N++
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 99.7 bits (249), Expect = 5e-24
 Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 20/202 (9%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
            +L A+PS+I   +    L   +N+++SL       LTKL++  ++ N++  +    F+ 
Sbjct: 26  KKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83

Query: 95  LHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           L NL+++ + +N++ ++   +   L  LA L L  NQL          L +L  + L YN
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 154 KI-----NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
           ++       F            +T++ EL+L +N+++ + +GA   +  L  L L +N+L
Sbjct: 144 ELQSLPKGVF----------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 208 RTISPDDFIGLDSLKMLDISHN 229
           + +    F  L+ LKML +  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 39/219 (17%)

Query: 97  NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
           +   + LQ+N+++S+ + +   LTKL  LYL+ N+L        + LK L T+ ++ NK+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
                                            G    +  L+ L L  N+L+++ P  F
Sbjct: 98  QALPI----------------------------GVFDQLVNLAELRLDRNQLKSLPPRVF 129

Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLA 274
             L  L  L + +N L +L +     L +L+EL + +N L R+ +  F  L  L    L 
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 275 HNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
           +N +K +            F  L     + L+ NP  C 
Sbjct: 190 NNQLKRV--------PEGAFDSLEKLKMLQLQENPWDCT 220

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
            +  +L LQ N++ +L   A   +  L  L L+ NKL+T+    F  L +L+ L ++ N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
           L  L       L  L EL +  N L  L    F  L  L    L +N ++++
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  103 bits (260), Expect = 6e-26
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 17/229 (7%)

Query: 49  SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL-QNNQ 107
            Q          I  +  L      L    +    +  +    F NL N+  I +  +  
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 108 ITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGK 165
           +  + S S   L+K+ ++ + + +   ++  D  + L  L+ + +    +  F       
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF----PDL 123

Query: 166 NQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSLK 222
            +V      F L++  N  + ++   A  G+   +  L L +N   ++    F G   L 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLD 182

Query: 223 MLDISHN-LLTTLEETSKTFLP-ALEELFVSHNSLTRLDKD-FHGLPVL 268
            + ++ N  LT +++ +   +      L VS  S+T L       L  L
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 28/219 (12%)

Query: 28  LQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNRITSLD-GLLRGLTKLQVFNMDFN 82
            Q L + +  L  +PS    FS L ++     + +  +  L+      L+K+    +   
Sbjct: 33  TQTLKLIETHLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 83  Q-ITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHN-QLTEFLLDD 138
           + +T +  D  + L  L  + + N  +      + +        L ++ N  +T   ++ 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 139 IRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGV---TNIFELKLQHN-EIENLD-GALM 192
            +GL     T+ L  N                     T +  + L  N  +  +D  A  
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQ---------GYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 193 GIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
           G++ G S LD+S   +  +       L  L   + +  L
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN-TWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 9/159 (5%)

Query: 1   GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLY- 55
            L+ +  + + N   L  ++   L  L  L+ L I    L+  P   +++S      L  
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 56  ANNNRITSL-DGLLRGLTK-LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-N 112
            +N  +TS+     +GL        +  N  T V+   F           +N  +T +  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 113 SSLSGL-TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
            +  G+ +  + L +S   +T      +  LK L   + 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 1   GLTDLNWLFLN-NNRLKSLE-GQLGTLSKLQLLVIEQNQ-LEALPSDI-QLFSQLGSLYA 56
            L +++ ++++ +  L+ LE      LSK+  + I   + L  +  D  +    L  L  
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 57  NNNRITSLDGL--LRGLTKLQVFNM-DFNQITMVRRDEFQNLHN-LDSISLQNNQITSMN 112
            N  +     L  +       +  + D   +T +  + FQ L N   ++ L NN  TS+ 
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKR-LRTVDLSYNKI 155
                 TKL  +YL+ N+    +  D   G+      +D+S   +
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHN- 253
               L L    LRTI    F  L ++  + +S ++ L  LE  S   L  +  + + +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 254 SLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL 310
           +LT +D D    LP+L    + +  +K       +      +  +    + +  NP +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV------YSTDIFFILEITDNPYM 143

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (255), Expect = 1e-23
 Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
                    N N   SL  +   +++   L + +  L +LP ++    Q+  L    N +
Sbjct: 36  WEKQALPGENRNEAVSL-LKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL 92

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
            SL  L   L  L   +   N+++ +  +   +L +LD   + NNQ+T +    + L   
Sbjct: 93  ISLPELPASLEYL---DACDNRLSTL-PELPASLKHLD---VDNNQLTMLPELPALLEY- 144

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
             +   +NQLT  L +    L+ L    +  N++             +   ++  L +  
Sbjct: 145 --INADNNQLTM-LPELPTSLEVL---SVRNNQLTFL---------PELPESLEALDVST 189

Query: 182 NEIENLDGALMGIHGLSR----LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           N +E+L    +  H             N++  I P++ + LD    + +  N L++    
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRE 248

Query: 238 SKTFLPALEELFVSHNSLTRLD 259
           S +   A  +        +  D
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSD 270

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 3e-20
 Identities = 39/252 (15%), Positives = 85/252 (33%), Gaps = 32/252 (12%)

Query: 36  NQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRG--LTKLQVFNMDFNQITMVRRDEF 92
           N +    +D    + +                LL+   + +     ++   ++ +  +  
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP 79

Query: 93  QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
             +  L+   +  N + S+    + L    YL    N+L+  L +    LK L   D+  
Sbjct: 80  PQITVLE---ITQNALISLPELPASLE---YLDACDNRLST-LPELPASLKHL---DVDN 129

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
           N++             +    +  +   +N++  L         L  L + +N+L  +  
Sbjct: 130 NQLTMLP---------ELPALLEYINADNNQLTMLPEL---PTSLEVLSVRNNQLTFLPE 177

Query: 213 DDFIGLDSLKMLDISHNLLTTLEET---SKTFLPALEELFVSHNSLTRLDKDFHGLPVLC 269
                 +SL+ LD+S NLL +L      +              N +T + ++   L   C
Sbjct: 178 ----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233

Query: 270 KADLAHNNIKAI 281
              L  N + + 
Sbjct: 234 TIILEDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 2e-19
 Identities = 49/264 (18%), Positives = 90/264 (34%), Gaps = 44/264 (16%)

Query: 53  SLYANNNRITS----LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
           S  +  N I+              K  +   + N+       +   ++    + L    +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV--SLLKECLINQFSELQLNRLNL 71

Query: 109 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
           +S+  +L    ++  L ++ N L   L +    L+ L   D   N+++            
Sbjct: 72  SSLPDNL--PPQITVLEITQNALIS-LPELPASLEYL---DACDNRLSTLP--------- 116

Query: 169 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
           +   ++  L + +N++  L         L  ++  +N+L  +         SL++L + +
Sbjct: 117 ELPASLKHLDVDNNQLTMLPEL---PALLEYINADNNQLTMLPEL----PTSLEVLSVRN 169

Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA----DLAHNNIKAINIQ 284
           N LT L E       +LE L VS N L  L           +         N I  I   
Sbjct: 170 NQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225

Query: 285 LALKTQCQIFGLNSTLRIYLEGNP 308
                   I  L+ T  I LE NP
Sbjct: 226 --------ILSLDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 8/145 (5%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI----QLFSQLGSLYAN 57
            T L  L + NN+L  L     +L  L +     N LE+LP+                  
Sbjct: 159 PTSLEVLSVRNNQLTFLPELPESLEALDV---STNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 58  NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
            NRIT +   +  L       ++ N ++   R+                  + M+     
Sbjct: 216 ENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSDGQQN 274

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGL 142
                          E    D+  +
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 1/145 (0%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
                +     NR+  +   + +L     +++E N L +   +          Y      
Sbjct: 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
            S+    +      + +         ++ +   + +        N  ++    LS     
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLR 146
                   Q+    L+ +     LR
Sbjct: 326 RNTSGFREQVAA-WLEKLSASAELR 349

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  100 bits (250), Expect = 1e-23
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 3   TDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYAN 57
           +    L L++N L  L  E     L+ L  L++  N L  + S+   F  + +   L  +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 58  NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MN 112
           +N + +L + L   L  L+V  +  N I +V R+ F+++  L  + L  NQI+     + 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
              + L KL  L LS N+L +  L D++ L       L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 98.0 bits (244), Expect = 7e-23
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 11/160 (6%)

Query: 74  LQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQL 131
             + ++  N ++ +R +     L NL S+ L +N +  ++S +   +  L YL LS N L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGA 190
                     L+ L  + L  N I         +N  + +  + +L L  N+I       
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVV-----DRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 191 LMGIHGLSRL---DLSHNKLRTISPDDFIGLDSLKMLDIS 227
           +   + L +L   DLS NKL+ +   D   L +     + 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 94.1 bits (234), Expect = 2e-21
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)

Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 203
              +DLS+N +    +R   +     +TN+  L L HN +  +   A + +  L  LDLS
Sbjct: 41  TALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-- 261
            N L T+    F  L +L++L + +N +  ++  +   +  L++L++S N ++R   +  
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 262 --FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMR 316
              + LP L   DL+ N +K + +        Q         +YL  NP+ CD  + 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDL-----QKLPAWVKNGLYLHNNPLECDCKLY 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 9e-14
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
            + +L +L L++N L +L E     L  L++L++  N +  +  +   F  +  L   Y 
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYL 143

Query: 57  NNNRITSLD----GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL--DSISLQNNQIT 109
           + N+I+            L KL + ++  N++  +   + Q L     + + L NN + 
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 1   GLTDLNWLFLNNNRLKSLE----GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS--- 53
            +  L  L+L+ N++             L KL LL +  N+L+ LP       +L +   
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAWVK 191

Query: 54  --LYANNNRITSLDGLLRGLTKLQVFNMDF-----NQITMVRRDEFQNLHNLDSISLQNN 106
             LY +NN +     L +  +  Q   +         +  +   +  N+ +LD  +    
Sbjct: 192 NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEY 251

Query: 107 QITSMNSSL 115
           + ++  + L
Sbjct: 252 KESAWEAHL 260

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
             +  + L  N +K +  G      KL+ + +  NQ+  L  D    L   L SL    N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGN 90

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
           +IT L   L  GL  LQ+  ++ N+I  +R D FQ+LHNL+ +SL +N++ ++   + S 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 118 LTKLAYLYLSHN 129
           L  +  ++L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 31/157 (19%)

Query: 75  QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 133
               ++ N I ++    F     L  I L NNQI+ +   +  GL  L  L L  N++TE
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALM 192
                  GL  L+                              L L  N+I  L   A  
Sbjct: 95  LPKSLFEGLFSLQ-----------------------------LLLLNANKINCLRVDAFQ 125

Query: 193 GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
            +H L+ L L  NKL+TI+   F  L +++ + ++ N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 6e-15
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 29/158 (18%)

Query: 97  NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
            +  I L+ N I  +   + S   KL  + LS+NQ++E   D  +GL+ L ++ L  NKI
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
            +                                   G+  L  L L+ NK+  +  D F
Sbjct: 93  TELP----------------------------KSLFEGLFSLQLLLLNANKINCLRVDAF 124

Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
             L +L +L +  N L T+ + + + L A++ + ++ N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
            + L  N ++ I P  F     L+ +D+S+N ++ L   +   L +L  L +  N +T L
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 259 DKD-FHGLPVLCKADLAHNNIKAI-----------------NIQLALKTQCQIFGLNSTL 300
            K  F GL  L    L  N I  +                 + +L    +     L +  
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 301 RIYLEGNPVLCD 312
            ++L  NP +CD
Sbjct: 156 TMHLAQNPFICD 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 23/107 (21%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
           GL  LN L L  N++  L +     L  LQLL++  N++  L                  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR----------------- 120

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
                    + L  L + ++  N++  + +  F  L  + ++ L  N
Sbjct: 121 -----VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 1e-23
 Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 33/304 (10%)

Query: 2   LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59
              L  L+L NN     +   L   S+L  L +  N L   +PS +   S+L  L    N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 60  RIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSG 117
            +   +   L  +  L+   +DFN +T        N  NL+ ISL NN++T  +   +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN-----KFG--TRNEGKNQVQG 170
           L  LA L LS+N  +  +  ++   + L  +DL+ N  N          +     N + G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 171 VTNIFELKLQHNEIENLDGALMGIHG-----------LSRLDLSHNKLRTISPDDFIGLD 219
              ++       +  +  G L+   G            +  +++       +   F    
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 220 SLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADL 273
           S+  LD+S+N+L+      +       +P L  L + HN ++  +  +   L  L   DL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 274 AHNN 277
           + N 
Sbjct: 688 SSNK 691

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 2e-23
 Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 29/271 (10%)

Query: 2   LTDLNWLFLNNNRLK---SLEGQLGTLSKLQLLVIEQNQLE---ALPSDIQLFSQLGSLY 55
              L  L L+ N L    +    LG+ S L+ L +  N L+    +   ++L + L  L 
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLD 157

Query: 56  ANNNRIT----SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
            + N I+        L  G  +L+   +  N+I+     +     NL+ + + +N  ++ 
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTG 215

Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
              L   + L +L +S N+L+      I     L+ +++S N+         G      +
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-------GPIPPLPL 268

Query: 172 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
            ++  L L  N+      + L GA      L+ LDLS N      P  F     L+ L +
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGAC---DTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 227 SHNLLT-TLEETSKTFLPALEELFVSHNSLT 256
           S N  +  L   +   +  L+ L +S N  +
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 1e-20
 Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 48/266 (18%)

Query: 2   LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59
            T+LNW+ L+NNRL   +   +G L  L +L +  N     +P+++     L  L  N N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 60  RITSLDGLL-RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT---SMNSSL 115
                 G +   + K     +  N I   R    +N           N +      +  L
Sbjct: 549 LFN---GTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
           + L+      ++                 +  +D+SYN                      
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN---------------------- 642

Query: 176 ELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNL 230
                      L G     +  +  L  L+L HN +  +I PD+   L  L +LD+S N 
Sbjct: 643 ----------MLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNK 691

Query: 231 LTTLEETSKTFLPALEELFVSHNSLT 256
           L      + + L  L E+ +S+N+L+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.7 bits (226), Expect = 9e-20
 Identities = 57/273 (20%), Positives = 102/273 (37%), Gaps = 33/273 (12%)

Query: 2   LTDLNWLFLNNNRLKSLEGQL--GTLSKLQLLVIEQNQLE-ALPSDIQ-LFSQLGSLYAN 57
            T+L  L +++N      G +    L  LQ L + +N+    +P  +      L  L  +
Sbjct: 246 CTELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 58  NNRIT-SLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQIT-SMNSS 114
            N    ++       + L+   +  N  +  +  D    +  L  + L  N+ +  +  S
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 115 LSGLT-KLAYLYLSHNQLTEFLLDDI--RGLKRLRTVDLSYNKINKFGTRNEGK--NQVQ 169
           L+ L+  L  L LS N  +  +L ++       L+ + L  N          GK    + 
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-------GKIPPTLS 415

Query: 170 GVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
             + +  L L  N    L G     L  +  L  L L  N L    P + + + +L+ L 
Sbjct: 416 NCSELVSLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 226 ISHNLLT-TL-EETSKTFLPALEELFVSHNSLT 256
           +  N LT  +    S      L  + +S+N LT
Sbjct: 473 LDFNDLTGEIPSGLSN--CTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 4e-19
 Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 29/288 (10%)

Query: 8   LFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT- 62
           + L++  L          L +L+ L+ L +  + +    S  +  + L SL  + N ++ 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 63  --SLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMNSS----L 115
             +    L   + L+  N+  N +    +      L++L+ + L  N I+  N       
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK-NQVQGVTNI 174
            G  +L +L +S N+++  +  D+     L  +D+S N  +            +   + +
Sbjct: 175 DGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS-------TGIPFLGDCSAL 225

Query: 175 FELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 232
             L +  N++  +   A+     L  L++S N+    I P     L SL+ L ++ N  T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFT 282

Query: 233 -TLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNI 278
             + +        L  L +S N     +   F    +L    L+ NN 
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 71  LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 130
           +T + + +   N           +L  L+S+ L N+ I    S       L  L LS N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 131 LTEFL--LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN----EI 184
           L+  +  L  +     L+ +++S N ++  G  + G      + ++  L L  N      
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK----LNSLEVLDLSANSISGAN 167

Query: 185 ENLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFL 242
                   G   L  L +S NK+   +         +L+ LD+S N  +  +        
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD--C 222

Query: 243 PALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNI 278
            AL+ L +S N L+    +       L   +++ N  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 1   GLTDLNWLFLNNNRLK---SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYA 56
                       N L+       QL  LS      I                  +  L  
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 57  NNNRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSS 114
           + N ++  +   +  +  L + N+  N I+    DE  +L  L+ + L +N++   +  +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 115 LSGLTKLAYLYLSHNQLT 132
           +S LT L  + LS+N L+
Sbjct: 700 MSALTMLTEIDLSNNNLS 717

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 97.0 bits (242), Expect = 3e-23
 Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 25/245 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           GL +     L    +  L      LS +Q    + + +++L + +Q F+ L  L+ ++N+
Sbjct: 17  GLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ 74

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           I+ L  L + LTKL+  +++ N++  +          L  + L NN++     SL  L  
Sbjct: 75  ISDLSPL-KDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDT-DSLIHLKN 129

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
           L  L + +N+L    +  +  L +L  +DL  N+I            +  +  +  + L 
Sbjct: 130 LEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT-------GGLTRLKKVNWIDLT 180

Query: 181 HNEIENLDGALMGIHGLSRLDLSHN----KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 236
             +  N       +     L +++       R ISP       S     +   L    +E
Sbjct: 181 GQKCVNEP-----VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235

Query: 237 TSKTF 241
            S  F
Sbjct: 236 VSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 93.9 bits (234), Expect = 4e-22
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 18/212 (8%)

Query: 31  LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
            +     +  +  D  L +           +T L    + L+ +Q FN D + I  +   
Sbjct: 2   SIQRPTPINQVFPDPGL-ANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSL--A 57

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
             Q   NL  + L +NQI+ + S L  LTKL  L ++ N+L    L+ I     L  + L
Sbjct: 58  GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFL 113

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
             N++    +       +  + N+  L +++N+++++   L  +  L  LDL  N++   
Sbjct: 114 DNNELRDTDS-------LIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT 165

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
                  L  +  +D++           +  L
Sbjct: 166 GG--LTRLKKVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 19/202 (9%)

Query: 82  NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 141
             I  V  D    L N    +L    +T +  S   L+ +      ++ +    L  ++ 
Sbjct: 7   TPINQVFPDP--GLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQS--LAGMQF 61

Query: 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD 201
              L+ + LS+N+I+         + ++ +T + EL +  N ++NL+G  +    LSRL 
Sbjct: 62  FTNLKELHLSHNQISDL-------SPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLF 112

Query: 202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD 261
           L +N+LR       I L +L++L I +N L ++       L  LE L +  N +T     
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNTG-G 167

Query: 262 FHGLPVLCKADLAHNNIKAINI 283
              L  +   DL         +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPV 189

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
            +   I  +     GL       L    +T+  L   + L  ++  +   + I       
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL---- 56

Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
                +Q  TN+ EL L HN+I +L   L  +  L  L ++ N+L+ ++    I    L 
Sbjct: 57  ---AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLS 109

Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            L + +N L   +      L  LE L + +N L  +      L  L   DL  N I   
Sbjct: 110 RLFLDNNELRDTDSLIH--LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 13/227 (5%)

Query: 9   FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DG 66
                  +  +    +L  L +  +  +      S I ++FS +       +    +   
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAY 123
               ++     +   N +T    +   +L  L+++ LQ NQ+  ++      + +  L  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 124 LYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
           L +S N ++           K L ++++S N +     R            I  L L  N
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------CLPPRIKVLDLHSN 431

Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
           +I+++   ++ +  L  L+++ N+L+++    F  L SL+ + +  N
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 3e-19
 Identities = 38/324 (11%), Positives = 91/324 (28%), Gaps = 46/324 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            L+ L  L +++NR++ L+        +L+ L +  N+L  +         L  L  + N
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN 100

Query: 60  RITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
              +L        +++L+   +    +         +L+    + +              
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG- 159

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           L       L     T      I  +      +L  + I      N+    +  +  +   
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 178 K----------------------------LQHNEIENL-----------DGALMGIHGLS 198
                                        + +  I N+           D +   +  LS
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
              +  +         +    ++ + + + +    +     + +     L  S+N LT  
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 259 -DKDFHGLPVLCKADLAHNNIKAI 281
             ++   L  L    L  N +K +
Sbjct: 340 VFENCGHLTELETLILQMNQLKEL 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 49/319 (15%), Positives = 105/319 (32%), Gaps = 44/319 (13%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L D    +  +   K       +   L  +    N    +   +   + +     +N ++
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH-TTVWYFSISNVKL 259

Query: 62  TS------LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSS 114
                    D     L  L +  +  +     +   ++   N++  +   +         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
            S ++   +L  S+N LT+ + ++   L  L T+ L  N++ +                 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE----------------- 362

Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLTT 233
                    +  +      +  L +LD+S N +             SL  L++S N+LT 
Sbjct: 363 ---------LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
                +   P ++ L +  N +  + K    L  L + ++A N +K++            
Sbjct: 414 T--IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-------DGIF 464

Query: 294 FGLNSTLRIYLEGNPVLCD 312
             L S  +I+L  NP  C 
Sbjct: 465 DRLTSLQKIWLHTNPWDCS 483

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 21/302 (6%)

Query: 1   GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
              +L  L L+ N   +L    + G +S+L+ L +    LE           +  +    
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI---------- 108
                      GL      ++     T        ++      +L+ + I          
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 109 --TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL---KRLRTVDLSYNKINKFGTRNE 163
              S+ + L    KL+ L L++ + T      I  L     +    +S  K+       +
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 164 GKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
                  +  +   ++  +               ++  + + +  R +       +    
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD---FHGLPVLCKADLAHNNIK 279
            LD S+NLLT     +   L  LE L +  N L  L K       +  L + D++ N++ 
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 280 AI 281
             
Sbjct: 388 YD 389

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 7/220 (3%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
           N L  +P D+    +   L  + N I+ L    +  L+KL++  +  N+I  +    F+ 
Sbjct: 10  NGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
              L+ + L +N++  +  S      L +L LS N      +  +   + +L+ + LS  
Sbjct: 68  NQELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
            + K  +     +       +   +    + +           L  +  ++ +   I   
Sbjct: 126 HLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
               + +L++ +I   L         + L  L+      N
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 1   GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
            +  L  L ++ N +     +G       L  L +  N L        L  ++  L  ++
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHS 430

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
           N+I S+   +  L  LQ  N+  NQ+  V    F  L +L  I L  N
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
            L++S N +  +   D + L  L++L ISHN +  L+ +   F   LE L +SHN L ++
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 259 DKDFHGLPVLCKADLAHNNIKAI 281
               H    L   DL+ N   A+
Sbjct: 85  --SCHPTVNLKHLDLSFNAFDAL 105

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
                L +  N I  L    ++ +  L  L +SHN+++ +    F     L+ LD+SHN 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQ 284
           L  +   S      L+ L +S N+   L   K+F  +  L    L+  +++  ++ 
Sbjct: 81  LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 3   TDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANN 58
                L LNNN    LE  G    L +L+ +    N++  +         S +  +   +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEILLTS 90

Query: 59  NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           NR+ ++   + +GL  L+   +  N+IT V  D F  L ++  +SL +NQIT++   +  
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 117 GLTKLAYLYLSHNQL 131
            L  L+ L L  N  
Sbjct: 151 TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 32/158 (20%)

Query: 75  QVFNMDFNQITMVR-RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 132
               ++ N+ T++     F+ L  L  I+  NN+IT +   +  G + +  + L+ N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGAL 191
                  +GL+ L+T                             L L+ N I  + + + 
Sbjct: 95  NVQHKMFKGLESLKT-----------------------------LMLRSNRITCVGNDSF 125

Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
           +G+  +  L L  N++ T++P  F  L SL  L++  N
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSH 204
             + L+ N+     T  E     + +  + ++   +N+I ++ +GA  G  G++ + L+ 
Sbjct: 35  AELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 205 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FH 263
           N+L  +    F GL+SLK L +  N +T +   S   L ++  L +  N +T +    F 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 264 GLPVLCKADLAHN 276
            L  L   +L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
           G + +N + L +NRL+++       L  L+ L++  N++  +                  
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG----------------- 121

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
                +    GL+ +++ ++  NQIT V    F  LH+L +++L  N
Sbjct: 122 -----NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 199 RLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257
            L L++N+   +     F  L  L+ ++ S+N +T +EE +      + E+ ++ N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 258 LD-KDFHGLPVLCKADLAHNNIKAI 281
           +  K F GL  L    L  N I  +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCV 120

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.6 bits (223), Expect = 4e-21
 Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 14/189 (7%)

Query: 48  FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
           F    +     +   ++      +  L    +    +T +     +  HN+  +++ N  
Sbjct: 22  FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
            T+  + +SGL+ L  L +    +T   + ++ GL  L  +D+S++  +     +    +
Sbjct: 78  ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-----DSILTK 131

Query: 168 VQGVTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
           +  +  +  + L +N  I ++   L  +  L  L++  + +             L  L  
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 227 SHNLLTTLE 235
               +   +
Sbjct: 189 FSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.5 bits (220), Expect = 9e-21
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 5/156 (3%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           +  L ++ L N  +  L G +     ++ L I         + I   S L  L      +
Sbjct: 43  MNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDV 100

Query: 62  TSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
           TS     L GLT L + ++  +        +   L  ++SI L  N   +    L  L +
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
           L  L +  + + +     I    +L  +      I 
Sbjct: 161 LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
                 +  L  +   ++  + + +  L Y+ L++  +T+  L  I     ++ + ++  
Sbjct: 21  TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
                                            + G    +  L RL +    + +    
Sbjct: 77  HATN--------------------------YNPISG----LSNLERLRIMGKDVTSDKIP 106

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
           +  GL SL +LDISH+       T    LP +  + +S+N           LP L   ++
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166

Query: 274 AHNNIKAI 281
             + +   
Sbjct: 167 QFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLY-AN 57
           GL++L  L +    + S +   L  L+ L LL I  +  + ++ + I    ++ S+  + 
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 58  NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
           N  IT +  L + L +L+  N+ F+ +   R    ++   L+ +   +  I  
Sbjct: 146 NGAITDIMPL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
            D   L L +  L +L       L+KL  L ++ NQL+ L + +    ++LG+L   NN+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
           + SL  G+   LT+L    +  NQ+  +    F  L  L  + L  NQ+ S+   +   L
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           T L  L LS NQL          L +L+T+ L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.4 bits (209), Expect = 9e-19
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
           GLT L WL L+ N+L++L  G    L++L  L +  NQL +LP  +    +QL  LY   
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           N++ SL  G+   LTKL+   ++ NQ+  +    F  L NL ++SL  NQ+ S+ + +  
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176

Query: 117 GLTKLAYLYLSHNQ 130
            L KL  + L  NQ
Sbjct: 177 RLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 32/194 (16%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
           L+++PS I   ++   L   +  + +L D   RGLTKL   N+D+NQ+  +    F +L 
Sbjct: 26  LDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 97  NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
            L ++ L NNQ+ S+   +   LT+L  LYL  NQL          L +L+ + L+    
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT--- 140

Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
                     NQ+Q +                 GA   +  L  L LS N+L+++    F
Sbjct: 141 ----------NQLQSIP---------------AGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

Query: 216 IGLDSLKMLDISHN 229
             L  L+ + +  N
Sbjct: 176 DRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 176 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
           +L LQ   +  L D    G+  L+ L+L +N+L+T+S   F  L  L  L +++N L +L
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 235 EETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAI------------ 281
                  L  L++L++  N L  L    F  L  L +  L  N +++I            
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158

Query: 282 -----NIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
                  QL          L     I L GN   C 
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 50/244 (20%)

Query: 2   LTDLNWLFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYA 56
           L  LN+L++      +L G     +  L++L  L I    +  A+P  +     L +L  
Sbjct: 75  LPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSL 115
           + N ++                     +         +L NL  I+   N+I+ ++  S 
Sbjct: 133 SYNALSG-------------------TLP----PSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 116 SGLTKLA-YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK--NQVQGVT 172
              +KL   + +S N+LT  +      L  L  VDLS N +       EG          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML-------EGDASVLFGSDK 221

Query: 173 NIFELKLQHNEIENLDGA---LMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISH 228
           N  ++ L  N   +L      +     L+ LDL +N++  T+ P     L  L  L++S 
Sbjct: 222 NTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSF 277

Query: 229 NLLT 232
           N L 
Sbjct: 278 NNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 28/225 (12%)

Query: 68  LRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQN-NQIT-SMNSSLSGLTKLAY 123
                ++   ++    +           NL  L+ + +   N +   +  +++ LT+L Y
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK--NQVQGVTNIFELKLQH 181
           LY++H  ++  + D +  +K L T+D SYN ++       G     +  + N+  +    
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------GTLPPSISSLPNLVGITFDG 158

Query: 182 NEIENLDGA----LMGIHGLSR-LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLE 235
           N    + GA          L   + +S N+L   I P       +L  +D+S N+L    
Sbjct: 159 N---RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRNMLE--G 211

Query: 236 ETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
           + S  F      +++ ++ NSL            L   DL +N I
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 47/321 (14%), Positives = 97/321 (30%), Gaps = 42/321 (13%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            L++L  L L++NR++SL          L+ L +  N+L+ +       + L  L  + N
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN 131

Query: 60  RITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH-NLDSISLQNNQITSMNSSLS 116
               L        LTKL    +   +   +      +LH +   + L +  I    +   
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG----------------- 159
            +     L+L  +  + F +     +  L  + LS  K+N                    
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 160 ---TRNEGKNQVQGVTNIFEL----KLQHNEIENL-----------DGALMGIHGLSRLD 201
              T    +   +    +F+      +++  I NL             +   +  L    
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-K 260
           + +          +     + +  +S +    +         +   L  + N  T    +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 261 DFHGLPVLCKADLAHNNIKAI 281
               L  L    L  N +K  
Sbjct: 372 GCSTLKRLQTLILQRNGLKNF 392

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 13/227 (5%)

Query: 9   FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSL-DG 66
                  +        L  L +  ++          +  +F+++     + +    +   
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---SLSGLTKLAY 123
                +     N   N  T         L  L ++ LQ N + +          ++ L  
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 124 LYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
           L +S N L     D      + +  ++LS N +     R            +  L L +N
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNN 460

Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
            I ++   +  +  L  L+++ N+L+++    F  L SL+ + +  N
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 16/297 (5%)

Query: 2   LTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
           +  L  L L+ N    L    + G L+KL  L +   +   L         L  +  +  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 60  RITSLDGLLRGLTKLQVF--NMDFNQITMVRRDEFQNLHNLDSISLQNNQI------TSM 111
                 G    L        ++ F+  ++       +++ L  + L N ++        M
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-----RLRTVDLSYNKINKFGTRNEGKN 166
                       L ++   +       ++  +      +  +++    I +   R E   
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 167 QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
               + ++    +++       +        ++   LS +    I         S   L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
            + N+ T       + L  L+ L +  N L    K       +   +    ++ ++N
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 45/282 (15%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L  +P D+    +  +L  + N I+ L    +  L++L+V  +  N+I  +    F  
Sbjct: 41  RNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
             +L+ + + +N++ ++  S   +  L +L LS N      +  +   L +L  + LS  
Sbjct: 99  NQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
           K      + +         +   L L    I+  +   + I   + L L  +     S  
Sbjct: 157 KF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 214 DFIGLDSLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV 267
             + +++L  L +S+  L       L             L V+   +    K        
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 268 LCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
                + + NI  + I   +  +   +   +   + +E    
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 54/330 (16%), Positives = 117/330 (35%), Gaps = 35/330 (10%)

Query: 3   TDLNWLFLNNNRLKSLEGQLG-------TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
           T +  L  + N L S++  +         LS ++L      +L    S++     L ++ 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 56  ANNNRITSLDGL-------LRGLTKLQVFNMDFNQITMVRRDEFQN--LHNLDSISLQNN 106
             +   T    +        R +  L ++N+   +        +    L +L    ++N 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 107 QITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
                  +L S   ++    LS +      +           ++ + N       +    
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG--- 372

Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL----DSL 221
                +  +  L LQ N ++N     +    +S L+     L +++   +       +S+
Sbjct: 373 --CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
            +L++S N+LT      +   P ++ L + +N +  + KD   L  L + ++A N +K++
Sbjct: 431 LVLNLSSNMLTGS--VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

Query: 282 NIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
                         L S   I+L  NP  C
Sbjct: 489 P-DGVFD------RLTSLQYIWLHDNPWDC 511

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 35/154 (22%), Positives = 50/154 (32%), Gaps = 22/154 (14%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  L  L L  N LK+          +  L      L +L S                 
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA--------------- 419

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
               D        + V N+  N +T  V R     +  LD   L NN+I S+   ++ L 
Sbjct: 420 ---YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIMSIPKDVTHLQ 473

Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
            L  L ++ NQL          L  L+ + L  N
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 27/303 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQL----LVIEQNQLEALPSDIQLFSQLGSLYA 56
            LT L +L L+  + + L+  L  ++ L L    L +    ++   ++         L+ 
Sbjct: 144 NLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 57  NNNRITSL----DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
             +  +      +  +  L  LQ+ N+  N     R   F +       +L N  +  + 
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTLLNVTLQHIE 260

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ- 169
           ++     KL + +     +    + +  I           S   +      +        
Sbjct: 261 TTWKCSVKL-FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 170 -------GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
                      +    L  ++   +           + L+ + N            L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 222 KMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNN 277
           + L +  N L    + +     + +LE L VS NSL     D+       +   +L+ N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 278 IKA 280
           +  
Sbjct: 440 LTG 442

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
                L L  N I  L    +  +  L  L LSHN++R++    F+    L+ LD+SHN 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALK 288
           L  +   S   + +L  L +S N    L   K+F  L  L    L+    + +++     
Sbjct: 112 LQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 289 TQCQIFGLNSTLRIYLEGNPVLC 311
                  L+  +  +++G     
Sbjct: 169 LHLSCILLD-LVSYHIKGGETES 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  ++ +  NN+ +KS++G +  L  ++ L +  N+L  + +  +L + L  L    N+
Sbjct: 39  ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKEL-TNLTYLILTGNQ 96

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGL 118
           + SL +G+   LT L+   +  NQ+  +    F  L NL  ++L +NQ+ S+   +   L
Sbjct: 97  LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156

Query: 119 TKLAYLYLSHNQLT 132
           T L  L LS+NQL 
Sbjct: 157 TNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
            LT+L +L L  N+L+SL  G    L+ L+ LV+ +NQL++LP  +    + L  L   +
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 59  NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
           N++ SL  G+   LT L   ++ +NQ+  +    F  L  L  + L  NQ+ S+ +    
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202

Query: 117 GLTKLAYLYLSHNQ 130
            LT L Y++L  N 
Sbjct: 203 RLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 34/184 (18%)

Query: 99  DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
              +L+   +T    + + L  +  +  +++ +    +  I+ L  +R + L  NK++  
Sbjct: 22  IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLHDI 78

Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 218
                            + +L +               L+ L L+ N+L+++    F  L
Sbjct: 79  S--------------ALK-ELTN---------------LTYLILTGNQLQSLPNGVFDKL 108

Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNN 277
            +LK L +  N L +L +     L  L  L ++HN L  L    F  L  L + DL++N 
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 278 IKAI 281
           ++++
Sbjct: 169 LQSL 172

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 36/188 (19%)

Query: 82  NQITMVRRDEFQNLHNLDSISLQN--NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 139
           + I +    +       + + L      I  M+++LS L    +L LS N + +  +  +
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSL 66

Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
            G++ LR + L  N I K                          IENLD        L  
Sbjct: 67  SGMENLRILSLGRNLIKK--------------------------IENLDAVA---DTLEE 97

Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
           L +S+N++ ++S      L +L++L +S+N +T   E  K   L  LE+L ++ N L   
Sbjct: 98  LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 259 DKDFHGLP 266
            K+ +   
Sbjct: 156 YKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
           EL      IE +D  L  +     L LS N +  IS     G+++L++L +  NL+  +E
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIKKIE 86

Query: 236 ETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFG 295
                    LEEL++S+N +  L      L  L    +++N I        L        
Sbjct: 87  NLDA-VADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLA------A 138

Query: 296 LNSTLRIYLEGNPV 309
           L+    + L GNP+
Sbjct: 139 LDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 74.7 bits (184), Expect = 7e-16
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 53  SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
            L+     I  +D  L  L   +   +  N I  +       + NL  +SL  N I  + 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
           +  +    L  L++S+NQ+    L  I  L  LR + +S NKI  +       +++  + 
Sbjct: 87  NLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW----GEIDKLAALD 140

Query: 173 NIFELKLQHNEIEN 186
            + +L L  N + N
Sbjct: 141 KLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 13  NRLKSLEGQLG-TLSKLQLLVIEQ--NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 69
           + ++  E +     ++ + + +      +E + + +        L  + N I  +   L 
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LS 67

Query: 70  GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
           G+  L++ ++  N I  +  +       L+ + +  NQI S+ S +  L  L  LY+S+N
Sbjct: 68  GMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN 125

Query: 130 QLTEFL-LDDIRGLKRLRTVDLSYNKINK 157
           ++T +  +D +  L +L  + L+ N +  
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L     L L+ N ++ +   L  +  L++L + +N ++ + +   +   L  L+ + N+I
Sbjct: 47  LKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
            SL G +  L  L+V  M  N+IT     D+   L  L+ + L  N + +     +  +
Sbjct: 106 ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
           G+ +L  L L  N +K +E        L+ L I  NQ+ +L S I+    L  LY +NN+
Sbjct: 68  GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 126

Query: 61  ITSLDGL--LRGLTKLQVFNMDFNQIT 85
           IT+   +  L  L KL+   +  N + 
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 28/255 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQL--EALPSDIQL-FSQLGS 53
               L  L +   R+ S       ++  +S LQ L +E  ++   A P  ++     L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 54  LYANNNRITSLDGLLRGL-----TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
           L   N    + D  L  L       L+V ++          ++ +    L ++ L +N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 109 TSMNS-----SLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGT 160
                            L  L L +  +               +L+ +DLS+N +     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL----R 241

Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 220
              G       + +  L L    ++ +   L     LS LDLS+N+L          L  
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP--SPDELPQ 297

Query: 221 LKMLDISHNLLTTLE 235
           +  L +  N     E
Sbjct: 298 VGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 7e-16
 Identities = 58/287 (20%), Positives = 92/287 (32%), Gaps = 44/287 (15%)

Query: 18  LEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRIT--SLDGLLRGLTKL 74
           +E   G  S   LL     + +    +DI     L  L     RI    L G LR L   
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 75  QVFNMDFNQITMVRRDEFQ----NLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLY 125
            +  +    + +              +L+ ++L+N    + ++ L+ L       L  L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
           ++      F  + +R    L T+DLS N                    + E  L      
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPE------------------LGERGLISALCP 197

Query: 186 NLDGALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISHNLLTTL-EETSKTF 241
                      L  L L +  + T S            L+ LD+SHN L       S  +
Sbjct: 198 L------KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 242 LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLAL 287
              L  L +S   L ++ K     L VL   DL++N +        L
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNPSPDEL 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

Query: 81  FNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDD 138
           FN +     + +    +L+ +  + +    +   + +     L  L +   ++   +L  
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 139 ---IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI- 194
              + G+  L+ + L   ++         +     +  +    +     +     L    
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 195 -HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF----LPALEELF 249
             GL  L ++       S +      +L  LD+S N                 P L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 250 VSHNSLTRLDK----DFHGLPVLCKADLAHNNIKAI 281
           + +  +                L   DL+HN+++  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 19/197 (9%)

Query: 98  LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157
            + +   + ++     SL  L K         Q T+ +         L+ + +   +I  
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII-----KSLSLKRLTVRAARIP- 81

Query: 158 FGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFI 216
                 G  +V G++ + EL L++ E+       L+   G     L+   +   + D ++
Sbjct: 82  -SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140

Query: 217 G------LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH-----GL 265
                     LK+L I+               PAL  L +S N                 
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 266 PVLCKADLAHNNIKAIN 282
           P L    L +  ++  +
Sbjct: 201 PTLQVLALRNAGMETPS 217

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 31/211 (14%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ--------------NQLEALPSDIQL 47
              L    L+  +   L+ +L +  +LQ L  E               + L      +Q 
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 48  FSQLGSL---------YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
           FS L ++            +  +     L      ++V ++    +T++     + L  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLV 465

Query: 99  DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
             + L +N++ ++  +L+ L  L  L  S N L    +D +  L RL+ + L  N++ + 
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQS 523

Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDG 189
                    +     +  L LQ N +   +G
Sbjct: 524 ----AAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 37/255 (14%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN-RITSLDG 66
             L  +R +       T  +L    +   +   L S+++   +L  L   N   + ++  
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 67  LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 126
           L+R L  L          + ++  +   +       L++  +   +        +  L+L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 127 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186
           +H  LT   L  +  L  +  +DLS+N++                               
Sbjct: 449 AHKDLTV--LCHLEQLLLVTHLDLSHNRL-----------------------------RA 477

Query: 187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPAL 245
           L  AL  +  L  L  S N L  +       L  L+ L + +N L            P L
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 246 EELFVSHNSLTRLDK 260
             L +  NSL + + 
Sbjct: 536 VLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
            D+  L L +  L  L   L  L  +  L +  N+L ALP  +     L  L A++N + 
Sbjct: 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

Query: 63  SLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
           ++DG+   L +LQ   +  N++          +   L  ++LQ N +         L ++
Sbjct: 500 NVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 1e-10
 Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 26/264 (9%)

Query: 72  TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
             L   +++        R  +    +     L  ++        +   +L    LS  + 
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL 191
           T     ++   K L+ ++          T       +  +    E     + ++ +D   
Sbjct: 362 TVLQ-SELESCKELQELEPENKWCLL--TIILLMRALDPLLYEKETLQYFSTLKAVD--- 415

Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS 251
                 + LD   +K    +    +    +++L ++H  LT L    +  L  +  L +S
Sbjct: 416 --PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ--LLLVTHLDLS 471

Query: 252 HNSLTRLDKDFHGLPVLCKADLAHNNIKAI---------------NIQLALKTQCQIFGL 296
           HN L  L      L  L     + N ++ +               N +L      Q    
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 297 NSTLR-IYLEGNPVLCDDSMRAVI 319
              L  + L+GN +  ++ ++  +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQERL 555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNNR 60
            D+  L+L+ N+   +  +L     L L+ +  N++  L +     + +QL +L  + NR
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNR 89

Query: 61  ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
           +  +      GL  L++ ++  N I++V    F +L  L  +++  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 97
           L+ LP  I        LY + N+ T +   L     L + ++  N+I+ +    F N+  
Sbjct: 22  LKVLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 98  LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
           L ++ L  N++  +   +  GL  L  L L  N +
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 29  QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMV 87
             L ++ NQ   +P ++  +  L  +  +NNRI++L +     +T+L    + +N++  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 88  RRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
               F  L +L  +SL  N I+ +   + + L+ L++L +  N L
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 40/84 (47%)

Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
            ++ EL L  N+   +   L     L+ +DLS+N++ T+S   F  +  L  L +S+N L
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 232 TTLEETSKTFLPALEELFVSHNSL 255
             +   +   L +L  L +  N +
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 28/127 (22%)

Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
           L  NQ T +   LS    L  + LS+N+++         + +L T+ LSYN++       
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC----- 92

Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
                           +             G+  L  L L  N +  +    F  L +L 
Sbjct: 93  ----------------IPP-------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129

Query: 223 MLDISHN 229
            L I  N
Sbjct: 130 HLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
           +T L  L L+ NRL+ +       L  L+LL +  N +  +P     F+ L +L
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSAL 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
           + L    ++          + + L +   ++  + +      Q  ++  ++N I  LDG 
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLY 125
              L +L+   ++ N+I  +     Q L +L  + L NN +  +     L+ L  L YL 
Sbjct: 61  -PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 126 LSHNQLTE------FLLDDIRGLKRL 145
           +  N +T       +++  +  ++ L
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 78  NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 137
            +    I   +  ++ N      + L+  +I  + +  + L +   +  S N++ +  LD
Sbjct: 3   KLTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD 58

Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG--ALMGIH 195
               L+RL+T+ ++ N+I + G         Q + ++ EL L +N +  L     L  + 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGE-----GLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 196 GLSRLDLSHN 205
            L+ L +  N
Sbjct: 114 SLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 131 LTEFLLDDIRGL---KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
           LT  L++         R R +DL   KI         +N    +     +    NEI  L
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRKL 57

Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALE 246
           DG    +  L  L +++N++  I       L  L  L +++N L  L +      L +L 
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 247 ELFVSHNSLTRLD 259
            L +  N +T   
Sbjct: 117 YLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 22/128 (17%)

Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
           + L+   +   +   +      + LD+    +  +E    T L   + +  S N + +LD
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGAT-LDQFDAIDFSDNEIRKLD 58

Query: 260 KDFHGLPVLCKADLAHNNIKAI-NIQLALKTQCQIFGLNS----------------TLR- 301
             F  L  L    + +N I  I               L +                +L  
Sbjct: 59  -GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 302 IYLEGNPV 309
           + +  NPV
Sbjct: 118 LCILRNPV 125

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYA 56
            LT L  L+L  N+L+SL  G    L+ L  L +  NQL++LP+ +  F   +QL  L  
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--FDKLTQLKELAL 107

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
           N N++ SL DG+   LT+L+   +  NQ+  V    F  L +L  I L +N 
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
               +L L  N LKSL  G    L+ L  L +  N+L++LP+ +  +L + L  L  + N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTN 86

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
           ++ SL +G+   LT+L+   ++ NQ+  +    F  L  L  + L  NQ+ S+ +     
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 118 LTKLAYLYLSHNQ 130
           LT L Y++L  N 
Sbjct: 147 LTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 29  QLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
             L +E N L++LP+ +    + L  LY   N++ SL +G+   LT L   N+  NQ+  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 87  VRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
           +    F  L  L  ++L  NQ+ S+ +     LT+L  L L  NQL
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
             ++P+ I   +    L    N + SL +G+   LT L    +  N++  +    F  L 
Sbjct: 19  RTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 97  NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
           +L  ++L  NQ+ S+ + +   LT+L  L L+ NQL 
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 176 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
            L L+ N +++L +G    +  L++L L  NKL+++    F  L SL  L++S N L +L
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 235 EETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
                  L  L+EL ++ N L  L D  F  L  L    L  N +K++           +
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--------PDGV 143

Query: 294 F-GLNSTLRIYLEGNP 308
           F  L S   I+L  NP
Sbjct: 144 FDRLTSLQYIWLHDNP 159

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 8   LFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNNRITS 63
           L LN+N L  +   G  G L  L  L +++NQL  +  +      S +  L    N+I  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLGENKIKE 92

Query: 64  L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
           + + +  GL +L+  N+  NQI+ V    F++L++L S++L +N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 29  QLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQIT 85
             L++  N+L  + SD        L  L    N++T +      G + +Q   +  N+I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 86  MVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHN 129
            +    F  LH L +++L +NQI+  M  S   L  L  L L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
           L+ +P DI L +    L  N+N +  +  DGL   L  L    +  NQ+T +  + F+  
Sbjct: 20  LKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 96  HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 132
            ++  + L  N+I  + N    GL +L  L L  NQ++
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 75  QVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
               ++ N++  +  D  F  L +L  + L+ NQ+T +  +   G + +  L L  N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 133 EFLLDDIRGLKRLRTVDLSYNKI 155
           E       GL +L+T++L  N+I
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 176 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
           EL L  NE+  +  DG    +  L +L+L  N+L  I P+ F G   ++ L +  N +  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 234 LEETSKTFLPALEELFVSHNSLTR 257
           +       L  L+ L +  N ++ 
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISC 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 123 YLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINK-----FGTRNEGKNQVQGVTNIFE 176
            L L+ N+L     D +   L  L  ++L  N++       F          +G ++I E
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----------EGASHIQE 82

Query: 177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
           L+L  N+I+ + +   +G+H L  L+L  N++  + P  F  L+SL  L+++ N
Sbjct: 83  LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
           G + +  L L  N++K +       L +L+ L +  NQ+  +      F  L SL
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSL 128

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYA 56
            L +L  L+L +N+L +L  G   +L++L +L +  NQL  LPS +  F     L  L+ 
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--FDRLVHLKELFM 119

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
             N++T L   +  LT L    +D NQ+  +    F  L +L    L  N 
Sbjct: 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 38  LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
             ++P+ I   +Q   LY ++N+IT L  G+   L  L+   +  NQ+  +    F +L 
Sbjct: 31  HASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 97  NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
            L  + L  NQ+T + S++   L  L  L++  N+LTE L   I  L  L  + L  N+
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 29/155 (18%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
           T+   L+L++N++  LE G   +L  L+ L +  NQL ALP  +   L +QL  L    N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTN 98

Query: 60  RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
           ++T L   +                        F  L +L  + +  N++T +   +  L
Sbjct: 99  QLTVLPSAV------------------------FDRLVHLKELFMCCNKLTELPRGIERL 134

Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           T L +L L  NQL          L  L    L  N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 47/141 (33%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
           TN   L L  N+I  L  G    +  L  L L  N+L  +    F  L  L +LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 231 LTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALK 288
           LT L   S  F  L  L+ELF+  N LT L +    L  L    L  N +K+I       
Sbjct: 100 LTVLP--SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI------- 150

Query: 289 TQCQIF-GLNSTLRIYLEGNP 308
                F  L+S    YL GNP
Sbjct: 151 -PHGAFDRLSSLTHAYLFGNP 170

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 169 QGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
            G  N+ EL +++   +++L    L G+  L  L +  + LR ++PD F     L  L++
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 227 SHNLLTTLEETSKTFLP-ALEELFVSHNSLT 256
           S N L +L    KT    +L+EL +S N L 
Sbjct: 88  SFNALESLSW--KTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.9 bits (160), Expect = 5e-12
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 32/144 (22%)

Query: 190 ALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
            L G   L+ L + + + L+ +   D  GL  L+ L I  + L  +   +  F P L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 249 FVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
            +S N+L  L                                       S   + L GNP
Sbjct: 86  NLSFNALESLSWK-------------------------------TVQGLSLQELVLSGNP 114

Query: 309 VLCDDSMRAVIDAMETINNNTKIH 332
           + C  ++R +    E         
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQ 138

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 35  QNQLEALPSDIQLFSQLGSLY-ANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 92
           ++        +     L  LY  N   +  L    LRGL +L+   +  + +  V  D F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 93  QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
                L  ++L  N + S++        L  L LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 9e-10
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 57  NNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
            +  + SL  L  G   L    ++  Q +  +   + + L  L ++++  + +  +   +
Sbjct: 17  RDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
                +L+ L LS N L       ++GL  L+ + LS N ++
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 25/111 (22%)

Query: 1   GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
           G  +L  L++ N   L+ LE   L  L +L+ L I ++ L  +                 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---------------- 72

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 109
                         +L   N+ FN +  +     Q L +L  + L  N + 
Sbjct: 73  ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 14  RLKSLEGQLGTLSKLQLLVIE--QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 71
           R   LE +  T + ++ LV++  ++    +      F  L  L   N  + S+   L  L
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKL 70

Query: 72  TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHN 129
            KL+   +  N+I        + L NL  ++L  N++  +++   L  L  L  L L + 
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 130 QLTE------FLLDDIRGLKRL 145
           ++T        +   +  L  L
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
           R    +R + L   K N                N+  L L +  + ++   L  +  L +
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEF----VNLEFLSLINVGLISVSN-LPKLPKLKK 75

Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
           L+LS N++          L +L  L++S N L  +        L  L+ L + +  +T L
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 259 D 259
           +
Sbjct: 136 N 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 93  QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
               NL+ +SL N  + S+ S+L  L KL  L LS N++   L      L  L  ++LS 
Sbjct: 46  AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG 189
           NK+    T       ++ +  +  L L + E+ NL+ 
Sbjct: 105 NKLKDISTLEP----LKKLECLKSLDLFNCEVTNLND 137

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 70/391 (17%), Positives = 126/391 (32%), Gaps = 83/391 (21%)

Query: 3   TDLNWLFLNNNRL-----KSLEGQLGTLS-KLQLLVIEQNQL-----EALPSDIQLFSQL 51
             L  L L +N L       +   L T S K+Q L ++   L       L S ++    L
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 52  GSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLHN 97
             L+ ++N +         +GLL    +L+   +++  ++               +   +
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AASCEPLASVLRAKPD 171

Query: 98  LDSISLQNNQI--TSMNSSLSGL----TKLAYLYLSHNQLTE----FLLDDIRGLKRLRT 147
              +++ NN I    +     GL     +L  L L    +T      L   +     LR 
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDL 202
           + L  NK+   G        +   + +  L +    I      +L   L     L  L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 203 SHNKL-----RTISPDDFIGLDSLKMLDISHNLLTT-----LEETSKTFLPALEELFVSH 252
           + N+L     R +          L+ L +     T                 L EL +S+
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISN 350

Query: 253 NSLTRLDKDFHGLPVLCKA-----------DLAHNNIK---AINIQLALKTQCQIFGLNS 298
           N L   D    G+  LC+             LA  ++      ++   L         N 
Sbjct: 351 NRLE--DA---GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-------NH 398

Query: 299 TLR-IYLEGNPVLCDDSMRAVIDAMETINNN 328
           +LR + L  N  L D  +  +++++      
Sbjct: 399 SLRELDLSNNC-LGDAGILQLVESVRQPGCL 428

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 69/317 (21%)

Query: 72  TKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLY 125
             +Q  ++   +++  R  E    L     + L +  +T      ++S+L     LA L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 126 LSHNQLT---------------------------------EFLLDDIRGLKRLRTVDLSY 152
           L  N+L                                    L   +R L  L+ + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL 207
           N +   G +   +  +     + +L+L++  +     E L   L        L +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 208 -----RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF------LPALEELFVSHNSLT 256
                R +          L+ L +    +T   +  +          +L EL +  N L 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 257 R------LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPV 309
                       H    L    +    I A          C++     +L+ + L GN  
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESLKELSLAGNE- 295

Query: 310 LCDDSMRAVIDAMETIN 326
           L D+  R + + +    
Sbjct: 296 LGDEGARLLCETLLEPG 312

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 17  SLEGQLGTLSKLQLLVIE--QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKL 74
            LE +  T S ++ LV++  ++    L      F +L  L   N  +TS+  L + L KL
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-LNKL 66

Query: 75  QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLT 132
           +   +  N+++       +   NL  ++L  N+I  +++   L  L  L  L L + ++T
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 133 ------EFLLDDIRGLKRLRTVD 149
                 E +   +  L  L   D
Sbjct: 127 NLNDYRENVFKLLPQLTYLDGYD 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 59  NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMNSSLSG 117
            RI  L+   R  + ++   +D ++    + +        L+ +S  N  +TS+ ++L  
Sbjct: 5   RRIH-LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK 62

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           L KL  L LS N+++  L         L  ++LS NKI    T       ++ + N+  L
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP----LKKLENLKSL 118

Query: 178 KLQHNEIENLDG 189
            L + E+ NL+ 
Sbjct: 119 DLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
           R    ++ + L  ++ N+                +  L   +  + ++   L  ++ L +
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEF----EELEFLSTINVGLTSIAN-LPKLNKLKK 68

Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
           L+LS N++            +L  L++S N +  L        L  L+ L + +  +T L
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 259 D 259
           +
Sbjct: 129 N 129

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 47/346 (13%), Positives = 99/346 (28%), Gaps = 77/346 (22%)

Query: 22  LGTLSKLQLLVIEQNQL-----EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGL 71
           +   S ++   ++ + +     +++ + +     +  +  + N I       L   +   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 72  TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
             L++          V+ +  + L  L               +L    KL  + LS N  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLL-------------LQALLKCPKLHTVRLSDNAF 106

Query: 132 T----EFLLDDIRGLKRLRTVDLSYNKINKFGTR--------NEGKNQVQGVTNIFELKL 179
                E L+D +     L  + L  N +                   + +    +  +  
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 180 QHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSLKMLDISHN 229
             N +EN               L  + +  N +R    +  +         LK+LD+  N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK---AINIQLA 286
             T     S     AL     S  +L  L              L    +    A  +  A
Sbjct: 227 TFT--HLGSS----ALAIALKSWPNLREL-------------GLNDCLLSARGAAAVVDA 267

Query: 287 LKTQCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNTKI 331
                     N  L+ + L+ N  +  D++R +   ++       +
Sbjct: 268 FSK-----LENIGLQTLRLQYNE-IELDAVRTLKTVID--EKMPDL 305

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 49/202 (24%)

Query: 3   TDLNWLFLNNNRL--------------KSLEGQLGTLSKLQLLVIEQNQLE-----ALPS 43
           T L  L+L+NN L               ++  +      L+ ++  +N+LE         
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 44  DIQLFSQLGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE------ 91
             Q    L ++    N I        L   L    +L+V ++  N  T            
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----HLGSSALA 237

Query: 92  --FQNLHNLDSISLQNNQITSMN-----SSLSGL--TKLAYLYLSHNQLT----EFLLDD 138
              ++  NL  + L +  +++        + S L    L  L L +N++       L   
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297

Query: 139 IRG-LKRLRTVDLSYNKINKFG 159
           I   +  L  ++L+ N+ ++  
Sbjct: 298 IDEKMPDLLFLELNGNRFSEED 319

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 23/108 (21%)

Query: 1   GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            LT L  L L+ N+++SL +G    L+KL +L + +N+L++LP                 
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP----------------- 92

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
                +G+   LT+L+   +D NQ+  V    F  L +L  I L  N 
Sbjct: 93  -----NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 24/130 (18%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           +    L L +N+L+SL  G    L++L  L + QNQ+++LP                   
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------ 69

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
               G+   LTKL +  +  N++  +    F  L  L  ++L  NQ+ S+ +     LT 
Sbjct: 70  ----GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125

Query: 121 LAYLYLSHNQ 130
           L  ++L  N 
Sbjct: 126 LQKIWLHTNP 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 58/371 (15%), Positives = 118/371 (31%), Gaps = 100/371 (26%)

Query: 3   TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
            +  +L      +  ++ +    S +  + IEQ   + L +D Q+F++      N +R+ 
Sbjct: 89  INYKFL------MSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKY-----NVSRLQ 135

Query: 63  SLDGLLRGLTKLQ------VFNM----------------------DFNQ--ITMVRRDE- 91
               L + L +L+      +  +                      DF    + +   +  
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 92  ------FQNL-HNLDSISLQN-----NQITSMNSSLSGLTKLAYLYLSHNQLTEFL--LD 137
                  Q L + +D           N    ++S  + L +L    L        L  L 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYENCLLVLL 251

Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
           +++  K     +LS  KI    TR +             + L H+ +      +  +  L
Sbjct: 252 NVQNAKAWNAFNLS-CKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L 307

Query: 198 SR-LDLSHNKLR----TISP-----------DDFIGLDSLKMLDISHNLLTTLEETSKTF 241
            + LD     L     T +P           D     D+ K ++        L    ++ 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KLTTIIESS 362

Query: 242 LPALE-----ELFVSHNSLTRLDKDFHGLP--VLCK--ADLAHNNIKAINIQLALKTQCQ 292
           L  LE     ++F     L+      H +P  +L     D+  +++  +  +L   +  +
Sbjct: 363 LNVLEPAEYRKMFD---RLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 293 IFGLNSTLRIY 303
                ST+ I 
Sbjct: 419 KQPKESTISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 59/319 (18%), Positives = 105/319 (32%), Gaps = 85/319 (26%)

Query: 1   GLTDLNWLFLNNNRLK--SLEGQLGTLSK---LQLL--VIEQNQLEALPSDI-----QLF 48
            +TD    FL+       SL+    TL+      LL   ++    + LP ++     +  
Sbjct: 276 QVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRL 330

Query: 49  SQLGSL------------YANNNRIT-----SLDGL----LRGL-TKLQVFNMDFNQIT- 85
           S +               + N +++T     SL+ L     R +  +L VF    + I  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPT 389

Query: 86  ---------MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
                    +++ D    ++ L   SL   Q      S+  +    YL L         L
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----YLELKVK------L 439

Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLDGALMGIH 195
           ++   L R   VD  YN    F + +     +      +     H   IE+ +   +   
Sbjct: 440 ENEYALHR-SIVD-HYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTL--- 492

Query: 196 GLSR--LDLS--HNKLR-TISPDDFIG--LDSLKMLDI-------SHNLLTTLEETSKTF 241
                 LD      K+R   +  +  G  L++L+ L         +      L      F
Sbjct: 493 -FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 242 LPALEELFVS--HNSLTRL 258
           LP +EE  +   +  L R+
Sbjct: 552 LPKIEENLICSKYTDLLRI 570

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 23/105 (21%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           T    L+L +N++  LE G    L++L  L ++ NQL  LP+                  
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA------------------ 71

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
               G+   LT+L   +++ NQ+  + R  F NL +L  I L NN
Sbjct: 72  ----GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L ++P+ I   +    LY  +N+IT L+ G+   LT+L   ++D NQ+T++    F  
Sbjct: 19  KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76

Query: 95  LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
           L  L  +SL +NQ+ S+   +   L  L +++L +N
Sbjct: 77  LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 72  TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 130
           T  QV  +  NQIT +    F  L  L  + L NNQ+T + + +   LT+L  L L+ NQ
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 131 L 131
           L
Sbjct: 90  L 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YAN 57
           LT L  L L+NN+L  L  G    L++L  L +  NQL+++P     F  L SL   +  
Sbjct: 53  LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA--FDNLKSLTHIWLL 110

Query: 58  NN 59
           NN
Sbjct: 111 NN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 23/105 (21%)

Query: 3   TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           TD   L+LNNN++  LE G    L  LQ L    N+L A+P+                  
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
               G+   LT+L   +++ N +  + R  F NL +L  I L NN
Sbjct: 75  ----GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
            +L ++P+ I   +    L+ NNN+IT L  G+   L  LQ    + N++T +    F  
Sbjct: 22  IRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79

Query: 95  LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
           L  L  + L +N + S+   +   L  L ++YL +N
Sbjct: 80  LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 72  TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 130
           T  Q   ++ NQIT +    F +L NL  +   +N++T++ + +   LT+L  L L+ N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 131 L 131
           L
Sbjct: 93  L 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 2   LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YAN 57
           L +L  L+ N+N+L ++  G    L++L  L +  N L+++P     F  L SL   Y  
Sbjct: 56  LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA--FDNLKSLTHIYLY 113

Query: 58  NN 59
           NN
Sbjct: 114 NN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 41/311 (13%), Positives = 100/311 (32%), Gaps = 63/311 (20%)

Query: 3   TDLNWLFLNNNRLKS------LEGQLGTLSKLQLLVIEQNQL---------EALPSDIQL 47
             +  L L+ N L S      ++    T + +  L +  N L         + L +   +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA---I 78

Query: 48  FSQLGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQIT--------MVRRDEFQ 93
            + + SL  + N ++       +  L      + V ++ +N  +            +   
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 94  NLHNLDSISLQNNQIT-----SMNSSLSGL-TKLAYLYLSHNQLT----EFLLDDIRGL- 142
           ++ +L+   L+ N +       +   L+ +   +  L L  N L       L   +  + 
Sbjct: 139 SITSLN---LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGL 197
             + ++DLS N +                 ++  L L  N +     ENL      +  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 198 SRLDLSHNKLRTISPDDFIGL-------DSLKMLDISHNLLT-----TLEETSKTFLPAL 245
             + L ++ ++ +S +    L         + ++D +   +       +    +      
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 246 EELFVSHNSLT 256
           +   + +  L 
Sbjct: 316 DVPSLLNQCLI 326

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 53/271 (19%)

Query: 103 LQNNQITS-----MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLK-RLRTVDLSY 152
           +            +    S    +  L LS N L       L+         + +++LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNK 206
           N +    +    +       N+  L L  N +       L   L  I   ++ LDL  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 207 LRTISPDDFIGL-----DSLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLT 256
             + S  +F         S+  L++  N L       L +        +  L +  N+L 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 257 RLDKDFHGLPVLCKA-----------DLAHNNIK---AINIQLALKTQCQIFGLNSTLR- 301
                      L K            DL+ N +       +     +        + +  
Sbjct: 181 SK-----NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------PNHVVS 229

Query: 302 IYLEGNPVLCDDSMRAVIDAMETINNNTKIH 332
           + L  N  L   S+  +    +++ +   ++
Sbjct: 230 LNLCLNC-LHGPSLENLKLLKDSLKHLQTVY 259

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 25/169 (14%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
             DL+ +      L +L  ++   + L +    +  L++L        ++ S    ++ +
Sbjct: 161 QVDLSPVLDAMPLLNNL--KIKGTNNLSIGKKPRPNLKSL--------EIISGGLPDSVV 210

Query: 62  TSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF------QNLHNLDSISLQNNQIT----S 110
             +    L  L KL ++    +       + F          NL  + + + +       
Sbjct: 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270

Query: 111 MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSYNKI 155
           M      L +L  + +S   LT      LLD +  +K L+ +++ YN +
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 9e-04
 Identities = 35/264 (13%), Positives = 75/264 (28%), Gaps = 44/264 (16%)

Query: 5   LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 64
            + +  N  +    EG        +   I   +   L   +     L +L        S+
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 65  DGL-LRGLTKLQVFNMDF--NQITMVRRDEFQNLHNLD-----SISLQNNQITSMNSSLS 116
                  L  L++ +     + +  +   +  NL  L           +  +       S
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 117 G--LTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
                 L +L +   +    +++       L +L T+D+S   +   G            
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG------------ 295

Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL-KMLDISHNL 230
                          L   +  I  L  +++ +N    +S +       L K L +  ++
Sbjct: 296 ------------ARLLLDHVDKIKHLKFINMKYNY---LSDE---MKKELQKSLPMKIDV 337

Query: 231 LTTLEETSKTFLPALEELFVSHNS 254
             + E       P + EL   H+ 
Sbjct: 338 SDSQEYDDDYSYPMITELEHHHHH 361

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSLKMLDISHNLLTTL 234
           L  +      L      I  L  L+LS+N+L  +     I     +LK+L++S N L + 
Sbjct: 152 LNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211

Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD 261
            E  K     LEEL++  NSL    +D
Sbjct: 212 RELDKIKGLKLEELWLDGNSLCDTFRD 238

>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus} Length = 227

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 326 NNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
             N    G  + QP    ++   T T TT P    +   T T    T T T T TT I  
Sbjct: 156 YGNRIQSGYFVIQPGEINSAPIATATPTTKPTAFASTMPTVTL---TPTPTATTTTTIPT 212

Query: 386 EYTETITLE 394
               T +LE
Sbjct: 213 AVPTTESLE 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.93
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.77
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.31

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=326.97  Aligned_cols=309  Identities=23%  Similarity=0.337  Sum_probs=279.0

Q ss_pred             CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257           3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM   79 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l   79 (419)
                      ++|++|+|++|.|+.++ ..|..+++|+.|+|++|.++.+ |..|..+++|++|+|++|.+..++ ..|.++++|+.|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            47899999999999875 5788899999999999999977 678999999999999999999987 46789999999999


Q ss_pred             CCCCCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      ++|++.++.+..|.++++|++|++++|.+..+ +..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99999999999999999999999999999977 45789999999999999999998888899999999999999999887


Q ss_pred             cCCCCCCCcccCcccccEEEcCCCCC-cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257         159 GTRNEGKNQVQGVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  237 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  237 (419)
                      ...     .+..+++|+.|++++|.. ..++..+....+|+.|++++|.++.+.+..|..+++|+.|+|++|.+..++..
T Consensus       192 ~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          192 RDY-----SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             CTT-----CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred             Chh-----hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence            543     677889999999999864 45665555666999999999999999878899999999999999999999998


Q ss_pred             hccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchH
Q psy4257         238 SKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMR  316 (419)
Q Consensus       238 ~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~  316 (419)
                      .|..+++|+.|+|++|++..++ ..|..+++|+.|+|++|+|+.++...+       ..+++|+.|++++|||.|+|.+.
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF-------HSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB-------SCGGGCCEEECCSSCEECSGGGH
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc-------CCCcccCEEEccCCCccCccchH
Confidence            9999999999999999999974 679999999999999999999987653       34789999999999999999999


Q ss_pred             HHHHHHH
Q psy4257         317 AVIDAME  323 (419)
Q Consensus       317 ~~~~~l~  323 (419)
                      |+.+|..
T Consensus       340 ~~~~~~~  346 (477)
T 2id5_A          340 WVFRRRW  346 (477)
T ss_dssp             HHHTTTT
T ss_pred             hHHhhhh
Confidence            9987653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-40  Score=324.20  Aligned_cols=329  Identities=24%  Similarity=0.361  Sum_probs=268.7

Q ss_pred             CCCcEEeccccccccc-ccccccccccceeecccccCc-cC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEe
Q psy4257           3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLE-AL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFN   78 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~-~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~   78 (419)
                      ++|++|+|++|.++.+ +..+..+++|++|+|++|.+. .+ +..|..+++|++|++++|.+..+ +..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5689999999999877 567888999999999999887 55 45688999999999999999886 67889999999999


Q ss_pred             cCCCCCcccChh--hhcCCCCCCEEEccCCcCccc-ccc-ccCCccCcEEecccccccccChhhhcCC------------
Q psy4257          79 MDFNQITMVRRD--EFQNLHNLDSISLQNNQITSM-NSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGL------------  142 (419)
Q Consensus        79 l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~i-~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l------------  142 (419)
                      +++|++.+..+.  .|.++++|++|++++|++..+ |.. +..+++|++|++++|.+.+..+..+..+            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            999999874444  388899999999999999877 444 7889999999999999888766555443            


Q ss_pred             ----------------------CCccEEEcCCCCCccccCCC--------------------------------CCCCcc
Q psy4257         143 ----------------------KRLRTVDLSYNKINKFGTRN--------------------------------EGKNQV  168 (419)
Q Consensus       143 ----------------------~~L~~L~l~~n~l~~~~~~~--------------------------------~~~~~~  168 (419)
                                            ++|+.|++++|++....+..                                .....+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                  56777777777664311000                                000001


Q ss_pred             c--CcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCC
Q psy4257         169 Q--GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL  245 (419)
Q Consensus       169 ~--~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  245 (419)
                      .  ...+|+.|++++|.+..+ +..+..+++|++|++++|.+.++.+..|.++++|++|+|++|.+.++.+..|..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            1  125788899999988866 5667889999999999999999989999999999999999999999988899999999


Q ss_pred             ceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHH
Q psy4257         246 EELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAME  323 (419)
Q Consensus       246 ~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~  323 (419)
                      ++|+|++|++..+ +..|..+++|++|++++|+|+.++...+.       .+++|+.+++++|+|.|+|. +.|+..|++
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc-------cCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence            9999999999997 57899999999999999999998876543       48899999999999999997 789999998


Q ss_pred             hhcCCceeccccCCCCC
Q psy4257         324 TINNNTKIHGETICQPD  340 (419)
Q Consensus       324 ~~~~~~~~~~~~~c~~~  340 (419)
                      .  ......+...|..+
T Consensus       423 ~--~~~~~~~~~~c~~~  437 (455)
T 3v47_A          423 K--NSQKEQGSAKCSGS  437 (455)
T ss_dssp             H--TTTTEESCCBBTTT
T ss_pred             h--CccceeeeeeecCC
Confidence            7  34445556677653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-39  Score=329.05  Aligned_cols=326  Identities=21%  Similarity=0.278  Sum_probs=286.8

Q ss_pred             CCcEEeccccccccccc-ccccccccceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~   81 (419)
                      +|++|++++|.++.++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|+.|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            68899999999998864 47889999999999999999999999999999999999999987 56889999999999999


Q ss_pred             CCCc-ccChhhhcCCCCCCEEEccCCcCccc---cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257          82 NQIT-MVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus        82 n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      |.+. .++...|.++++|++|++++|.+..+   +..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            9988 45556799999999999999999976   4678999999999999999999888999999999999999999986


Q ss_pred             ccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCc---CcccCCCCCCCcEEEccCCcCcc
Q psy4257         158 FGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                      ...    ...+..+++|+.|++++|.+... +..+..+++|++|++++|.+.+.   .+..+..+++|++|+|++|++.+
T Consensus       415 ~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          415 KDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             ccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            542    22477889999999999999876 46688899999999999999763   23568889999999999999999


Q ss_pred             cCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257         234 LEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD  312 (419)
Q Consensus       234 ~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  312 (419)
                      +.+..|..+++|++|+|++|++++++ ..+..++.| .|++++|+++.+++..+.       .+++++.+++++|||.|+
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP-------ILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH-------HHHTSSEEECTTCCEECS
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc-------cCCCCCEEeCCCCCcccc
Confidence            99889999999999999999999864 689999999 999999999998877543       378899999999999999


Q ss_pred             cchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         313 DSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       313 ~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      |...|+..|++.............|..+.
T Consensus       563 c~~~~~~~w~~~~~~~~~~~~~~~C~~p~  591 (606)
T 3t6q_A          563 CSNIYFLEWYKENMQKLEDTEDTLCENPP  591 (606)
T ss_dssp             GGGHHHHHHHHHCGGGEECGGGCBEEESG
T ss_pred             CCcHHHHHHHHhCcccccCCCCCeeCCch
Confidence            99999999999754444445566776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-39  Score=329.86  Aligned_cols=333  Identities=25%  Similarity=0.297  Sum_probs=253.4

Q ss_pred             CCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257           4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD   80 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~   80 (419)
                      ++++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++. .|.++++|++|+|++|+|+.++ ..|.++.+|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            6899999999999987 568889999999999999999865 6899999999999999999986 578999999999999


Q ss_pred             CCCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhhcCCCCc----cEEEcCCCC
Q psy4257          81 FNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL----RTVDLSYNK  154 (419)
Q Consensus        81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~  154 (419)
                      +|+++++++..|+++++|++|+|++|.+..+  |..+..+++|++|++++|.+.+..+..|..+.++    ..++++.|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            9999999988899999999999999999864  6778889999999999998876654443222111    122222222


Q ss_pred             Ccccc---------------------------------------------------------------------------
Q psy4257         155 INKFG---------------------------------------------------------------------------  159 (419)
Q Consensus       155 l~~~~---------------------------------------------------------------------------  159 (419)
                      +..++                                                                           
T Consensus       213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence            11000                                                                           


Q ss_pred             ----------------------------------------------------CCCC--------------CCCcccCccc
Q psy4257         160 ----------------------------------------------------TRNE--------------GKNQVQGVTN  173 (419)
Q Consensus       160 ----------------------------------------------------~~~~--------------~~~~~~~~~~  173 (419)
                                                                          ....              .......+++
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~  372 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  372 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred             ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence                                                                0000              0000001223


Q ss_pred             ccEEEcCCCC----------------------------------------------------------------------
Q psy4257         174 IFELKLQHNE----------------------------------------------------------------------  183 (419)
Q Consensus       174 L~~L~l~~n~----------------------------------------------------------------------  183 (419)
                      |+.+++++|.                                                                      
T Consensus       373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            3333333332                                                                      


Q ss_pred             ----CcCc-hhhhcCCCCCcEEEcCCCCC-CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         184 ----IENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       184 ----l~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                          +..+ +..+..++.|+.|++++|.+ ..+.+..|..+++|++|+|++|+++++++..|.++++|++|+|++|+|++
T Consensus       453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~  532 (635)
T 4g8a_A          453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  532 (635)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence                2221 12334456677777777753 44567788899999999999999999999999999999999999999999


Q ss_pred             cC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCccccccchHHHHHHHHhhcCCceecccc
Q psy4257         258 LD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGET  335 (419)
Q Consensus       258 l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~  335 (419)
                      ++ ..|..+++|+.|+|++|+|+++++..+.       .+ .+|+.|++++|||.|||.+.||.+|++............
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~  605 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM  605 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-------CCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred             CChhHHhCCCCCCEEECCCCcCCCCCHHHHH-------hhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence            87 4689999999999999999999876543       24 579999999999999999999999999865555555667


Q ss_pred             CCCCCCCC
Q psy4257         336 ICQPDSNE  343 (419)
Q Consensus       336 ~c~~~~~~  343 (419)
                      .|..+..-
T Consensus       606 ~C~~P~~~  613 (635)
T 4g8a_A          606 ECATPSDK  613 (635)
T ss_dssp             BBCSSTTT
T ss_pred             eeCCchHH
Confidence            88765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=318.46  Aligned_cols=320  Identities=22%  Similarity=0.277  Sum_probs=222.7

Q ss_pred             CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCchhhhcCCCCCCEEecC
Q psy4257           3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD   80 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~   80 (419)
                      ++|++|++++|.++.++ ..|..+++|++|+|++|+++.+ |..|..+++|++|++++|.|..+|..  .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence            35777777777776654 4566677777777777777765 45677777777777777777776654  66777777777


Q ss_pred             CCCCccc-ChhhhcCCCCCCEEEccCCcCccc--------------------------cccccCC---------------
Q psy4257          81 FNQITMV-RRDEFQNLHNLDSISLQNNQITSM--------------------------NSSLSGL---------------  118 (419)
Q Consensus        81 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~i--------------------------~~~l~~l---------------  118 (419)
                      +|++.++ .+..|+++++|++|++++|.+...                          |..+..+               
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence            7777664 345667777777777766665421                          1111110               


Q ss_pred             --------------------------------------------------------------------ccCcEEeccccc
Q psy4257         119 --------------------------------------------------------------------TKLAYLYLSHNQ  130 (419)
Q Consensus       119 --------------------------------------------------------------------~~L~~L~l~~n~  130 (419)
                                                                                          ++|++|++++|.
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence                                                                                144455555555


Q ss_pred             ccccChhhh-----------------------------------------------------cCCCCccEEEcCCCCCcc
Q psy4257         131 LTEFLLDDI-----------------------------------------------------RGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       131 l~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~  157 (419)
                      +.+..+..+                                                     ..+++|++|++++|++.+
T Consensus       259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred             ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh
Confidence            443222222                                                     345566666666666654


Q ss_pred             ccCCCCCCCcccCcccccEEEcCCCCCcCc---hhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcc
Q psy4257         158 FGTRNEGKNQVQGVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                      ..+     ..+..+++|++|++++|.+..+   |..+..+++|++|++++|.+.+ +....|..+++|++|++++|++++
T Consensus       339 ~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          339 TVF-----ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             TTT-----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             hhh-----hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            322     2456677888888888888754   3557778888888888888877 655557778888888888888876


Q ss_pred             cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257         234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD  313 (419)
Q Consensus       234 ~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~  313 (419)
                      ..+..+  .++|+.|++++|+|+.+|..+..+++|++|++++|+|+.++...       +..+++|+.+++++|||.|+|
T Consensus       414 ~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-------~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          414 TIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-------FDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             GGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSSCBCCCH
T ss_pred             chhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHH-------hccCCcccEEECcCCCCcccC
Confidence            544333  26899999999999999988789999999999999999988763       234889999999999999999


Q ss_pred             chHHH-HHHHHhhcCCceeccccCCCCC
Q psy4257         314 SMRAV-IDAMETINNNTKIHGETICQPD  340 (419)
Q Consensus       314 ~~~~~-~~~l~~~~~~~~~~~~~~c~~~  340 (419)
                      .+.|+ ..|++...  ........|..+
T Consensus       485 ~~~~~~~~~~~~~~--~~~~~~~~C~~p  510 (520)
T 2z7x_B          485 PRIDYLSRWLNKNS--QKEQGSAKCSGS  510 (520)
T ss_dssp             HHHHHHHHHHHHTT--TTEESCCBBTTT
T ss_pred             CchHHHHHHHHhcc--ccCCCCCCcCCc
Confidence            99999 99998843  335566778665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.7e-39  Score=325.91  Aligned_cols=217  Identities=22%  Similarity=0.250  Sum_probs=157.8

Q ss_pred             CCccCcEEecccccccccC--hhhhcCCCCccEEEcCCCCCccccCCC-------------------CCCCcccCccccc
Q psy4257         117 GLTKLAYLYLSHNQLTEFL--LDDIRGLKRLRTVDLSYNKINKFGTRN-------------------EGKNQVQGVTNIF  175 (419)
Q Consensus       117 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------~~~~~~~~~~~L~  175 (419)
                      .+++|++|++++|.+.+..  +..+..+++|+.|++++|.+..++...                   .....+..+++|+
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            3456677777777766552  566777777888888777766544110                   0012455666777


Q ss_pred             EEEcCCCCCcC-chhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         176 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       176 ~L~l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      +|++++|.+.. .+..+..+++|++|++++|.+.+ +.+..|..+++|++|+|++|+++++.+..+..+++|++|+|++|
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            77777777665 34566777788888888887776 35777888888888888888888887777888888888888888


Q ss_pred             ccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCC-cceeEEecCCccccccchHHHHHHHHhhcCCcee
Q psy4257         254 SLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN-STLRIYLEGNPVLCDDSMRAVIDAMETINNNTKI  331 (419)
Q Consensus       254 ~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~-~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~  331 (419)
                      ++.++ |..|..+++|+.|++++|+|+.++..+        ..++ +++.+++++|||.|+|.+.|+.+|++........
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~--------~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~  579 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL--------QHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVN  579 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG--------GGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSS
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCcccCHhH--------hhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccC
Confidence            88886 567888888889999988888887652        2355 5999999999999999999999999875444444


Q ss_pred             ccccCCCCCC
Q psy4257         332 HGETICQPDS  341 (419)
Q Consensus       332 ~~~~~c~~~~  341 (419)
                      .....|..+.
T Consensus       580 ~~~~~C~~p~  589 (606)
T 3vq2_A          580 VEQMTCATPV  589 (606)
T ss_dssp             GGGCCCC---
T ss_pred             CccceeCCCh
Confidence            5566786543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.1e-38  Score=315.32  Aligned_cols=306  Identities=21%  Similarity=0.268  Sum_probs=227.7

Q ss_pred             CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCchhhhcCCCCCCEEecC
Q psy4257           3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD   80 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~   80 (419)
                      ++|++|++++|.|+.++ ..|..+++|++|+|++|.++.+ |..|..+++|++|++++|.|..+|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            46888999999888776 5678888899999999988877 56688888899999998888888765  78888888888


Q ss_pred             CCCCcccC-hhhhcCCCCCCEEEccCCcCccccccccCCc----------------------------------------
Q psy4257          81 FNQITMVR-RDEFQNLHNLDSISLQNNQITSMNSSLSGLT----------------------------------------  119 (419)
Q Consensus        81 ~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~----------------------------------------  119 (419)
                      +|++.++. +..|+++++|++|++++|++...  .+..++                                        
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  207 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS  207 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence            88888865 46788888888888888877532  122222                                        


Q ss_pred             ---------------------------------------------------------------------cCcEEeccccc
Q psy4257         120 ---------------------------------------------------------------------KLAYLYLSHNQ  130 (419)
Q Consensus       120 ---------------------------------------------------------------------~L~~L~l~~n~  130 (419)
                                                                                           +|++|++++|.
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence                                                                                 33444444444


Q ss_pred             ccccChhhh-----------------------------------------------------cCCCCccEEEcCCCCCcc
Q psy4257         131 LTEFLLDDI-----------------------------------------------------RGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       131 l~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~  157 (419)
                      +.+..+..+                                                     ..+++|++|++++|++.+
T Consensus       288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred             eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence            443222221                                                     445566666666666655


Q ss_pred             ccCCCCCCCcccCcccccEEEcCCCCCcCch---hhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcc
Q psy4257         158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                      ..+     ..+..+++|+.|++++|.+..++   ..+..+++|++|++++|.+.+ +....|..+++|++|++++|++++
T Consensus       368 ~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          368 SVF-----QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             TTT-----TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             chh-----hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            322     24566777888888888777543   456777788888888888877 655567777888888888888765


Q ss_pred             cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257         234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD  313 (419)
Q Consensus       234 ~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~  313 (419)
                      ..+..+.  ++|+.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++...       +..+++++.+++++|||.|+|
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-------~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV-------FDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTS-------TTTCTTCCCEECCSCCBCCCH
T ss_pred             chhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHH-------HhcCCCCCEEEecCCCcCCCc
Confidence            4332221  6899999999999999988779999999999999999988763       234789999999999999999


Q ss_pred             chHHHHH-HHHhhc
Q psy4257         314 SMRAVID-AMETIN  326 (419)
Q Consensus       314 ~~~~~~~-~l~~~~  326 (419)
                      .+.|+.. |++...
T Consensus       514 ~~~~~~~~~~~~~~  527 (562)
T 3a79_B          514 PGIRYLSEWINKHS  527 (562)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHhcC
Confidence            9999976 877643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-37  Score=298.48  Aligned_cols=305  Identities=24%  Similarity=0.336  Sum_probs=239.6

Q ss_pred             CCCCcEEecccccccccccc-cccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~   78 (419)
                      +++|++|+++++.++.++.. +..+++|+.|+|++|.++.++. .|..+++|++|++++|.+..++ ..|.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46788999999999888754 4668899999999999987754 6888899999999999998874 5678889999999


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +++|++..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+..   +..+++|+.|++++|.+..
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence            9999999888877888999999999999988774 46888899999999999888763   3445566666666665554


Q ss_pred             ccCCCCCC-----------CcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257         158 FGTRNEGK-----------NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI  226 (419)
Q Consensus       158 ~~~~~~~~-----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  226 (419)
                      +.......           .......+|+.|++++|.+..++ .+..+++|++|++++|.+.++.+..|..+++|++|+|
T Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence            32110000           00112357888888888888763 5777888999999999988888888888899999999


Q ss_pred             cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257         227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG  306 (419)
Q Consensus       227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~  306 (419)
                      ++|++.+++.. +..+++|++|+|++|++..++..+..+++|+.|++++|.|+.++.          ..+++|+.|++++
T Consensus       280 ~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~----------~~~~~L~~L~l~~  348 (390)
T 3o6n_A          280 SNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL----------STHHTLKNLTLSH  348 (390)
T ss_dssp             CSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC----------CTTCCCSEEECCS
T ss_pred             CCCcCcccCcc-cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc----------hhhccCCEEEcCC
Confidence            99988887543 456888999999999998888777888889999999999887752          2478899999999


Q ss_pred             CccccccchHHHHHH
Q psy4257         307 NPVLCDDSMRAVIDA  321 (419)
Q Consensus       307 Np~~c~~~~~~~~~~  321 (419)
                      |+|.|+|...|+..|
T Consensus       349 N~~~~~~~~~~~~~~  363 (390)
T 3o6n_A          349 NDWDCNSLRALFRNV  363 (390)
T ss_dssp             SCEEHHHHHHHTTTC
T ss_pred             CCccchhHHHHHHHH
Confidence            999999866555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-37  Score=318.83  Aligned_cols=332  Identities=23%  Similarity=0.303  Sum_probs=215.6

Q ss_pred             CCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeeccccccc------Cch----hhhcCC
Q psy4257           4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRIT------SLD----GLLRGL   71 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~------~l~----~~~~~l   71 (419)
                      +|++|++++|.++.++ ..+..+++|+.|++++|.+..+ +..|..+.+|+.|++++|...      .+|    ..|..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            4788888888877654 4566778888888888877754 334555555666655544322      111    134445


Q ss_pred             CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC----------------------------cCccc-cccccCCccCc
Q psy4257          72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN----------------------------QITSM-NSSLSGLTKLA  122 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n----------------------------~l~~i-~~~l~~l~~L~  122 (419)
                      ++|+.|++++|.+.++.+..|.++++|++|++++|                            ++..+ +..+..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            55555555555555554444444444444444333                            23322 23455566666


Q ss_pred             EEeccccccccc-ChhhhcCCCCccEEEcCCCCCccccCC---------------------CCCCCcccCcccccEEEcC
Q psy4257         123 YLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTR---------------------NEGKNQVQGVTNIFELKLQ  180 (419)
Q Consensus       123 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~~~~~~~~L~~L~l~  180 (419)
                      .|++++|.+.+. ....|.++++|++|++++|++..+...                     ...+..+..+++|+.|+++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            666666666543 224555666666666666655443221                     1123356778888888998


Q ss_pred             CCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCc--------ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCc
Q psy4257         181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISP--------DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS  251 (419)
Q Consensus       181 ~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  251 (419)
                      +|.++.++ ..+.++++|++|++++|.++++..        ..|.++++|++|+|++|++..++...|..+++|+.|+|+
T Consensus       489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence            88888776 457788889999999988876532        236778899999999999998888888889999999999


Q ss_pred             CCcccccCcc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccch-HHHHHHHHhhcCCc
Q psy4257         252 HNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSM-RAVIDAMETINNNT  329 (419)
Q Consensus       252 ~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~-~~~~~~l~~~~~~~  329 (419)
                      +|+++.++.. |..+++|+.|+|++|+|++++...+..      .+++++.+++++|||.|+|.. .||..|++.....+
T Consensus       569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~  642 (680)
T 1ziw_A          569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI  642 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH------HHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----
T ss_pred             CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc------cccccCEEEccCCCcccCCccHHHHHHHHHhcCccc
Confidence            9999998854 678899999999999999988875431      267899999999999999996 99999976532222


Q ss_pred             ee-ccccCCCCCC
Q psy4257         330 KI-HGETICQPDS  341 (419)
Q Consensus       330 ~~-~~~~~c~~~~  341 (419)
                      .. .....|..+.
T Consensus       643 ~~~~~~~~C~~p~  655 (680)
T 1ziw_A          643 PELSSHYLCNTPP  655 (680)
T ss_dssp             -------------
T ss_pred             ccccCCcEECCch
Confidence            22 2345776554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.3e-37  Score=307.85  Aligned_cols=327  Identities=22%  Similarity=0.363  Sum_probs=207.6

Q ss_pred             CCCcEEecccccccccc-cccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257           3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM   79 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l   79 (419)
                      ++|++|++++|.++.++ ..+..+++|++|+|++|.++.++ ..|..+++|++|++++|.+.+++ ..|.++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            46788888888877663 56777888888888888887664 46777888888888888888765 44777888888888


Q ss_pred             CCCCCcccC-hhhhcCCCCCCEEEccCCc-Ccccc-ccccCCccCcEEecccccccccChhhhc----------------
Q psy4257          80 DFNQITMVR-RDEFQNLHNLDSISLQNNQ-ITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIR----------------  140 (419)
Q Consensus        80 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------------  140 (419)
                      ++|.+.++. +..|.++++|++|++++|. +..++ ..+..+++|++|++++|.+.+..+..+.                
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            888877643 3467777777777777776 55554 3566666666666666666654443332                


Q ss_pred             --------CCCCccEEEcCCCCCccccCCC--------------------------------------------------
Q psy4257         141 --------GLKRLRTVDLSYNKINKFGTRN--------------------------------------------------  162 (419)
Q Consensus       141 --------~l~~L~~L~l~~n~l~~~~~~~--------------------------------------------------  162 (419)
                              .+++|++|++++|++.+.....                                                  
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence                    2445555555555544321000                                                  


Q ss_pred             -----------------------------------------------------------CC-------------------
Q psy4257         163 -----------------------------------------------------------EG-------------------  164 (419)
Q Consensus       163 -----------------------------------------------------------~~-------------------  164 (419)
                                                                                 ..                   
T Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~  345 (549)
T 2z81_A          266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL  345 (549)
T ss_dssp             CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence                                                                       00                   


Q ss_pred             --------CCcccCcccccEEEcCCCCCcCch---hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257         165 --------KNQVQGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       165 --------~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                              ...+..+++|+.|++++|.++.++   ..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+..
T Consensus       346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSC
T ss_pred             cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCccc
Confidence                    001223344444444444444443   2345556666666666666654 4445555566666666665554


Q ss_pred             cCchhc-----------------cCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecC
Q psy4257         234 LEETSK-----------------TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL  296 (419)
Q Consensus       234 ~~~~~~-----------------~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~  296 (419)
                      ++....                 ..+++|++|+|++|+|+.+|. ...+++|+.|+|++|+++++++..+       ..+
T Consensus       425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~l  496 (549)
T 2z81_A          425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF-------DRL  496 (549)
T ss_dssp             CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG-------GGC
T ss_pred             ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHH-------hcC
Confidence            432211                 245667777777777776664 3456777777777777777666533       347


Q ss_pred             CcceeEEecCCccccccc-hHHHHHHHHhhcCCceeccccCCCCC
Q psy4257         297 NSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKIHGETICQPD  340 (419)
Q Consensus       297 ~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~~~~~~c~~~  340 (419)
                      ++++.+++++|||.|+|. +.|+..|++..  .....+...|..+
T Consensus       497 ~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~--~~~~~~~~~C~~~  539 (549)
T 2z81_A          497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKEQGSAKCSGS  539 (549)
T ss_dssp             TTCCEEECCSSCBCCCHHHHHHHHHHHHHC--TTTEESCCBBTTT
T ss_pred             cccCEEEecCCCccCCCccHHHHHHHHHhc--ccccCCCCeECCC
Confidence            899999999999999998 57888899873  3445667778654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=307.51  Aligned_cols=164  Identities=24%  Similarity=0.339  Sum_probs=131.1

Q ss_pred             ccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc-ccCchhccCCCC
Q psy4257         168 VQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPA  244 (419)
Q Consensus       168 ~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~  244 (419)
                      +..+++|+.|++++|.+..++  ..+..+++|++|++++|.+.++.+..|.++++|++|++++|.+. +..+..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            556677788888888777653  35677888888888888888877888888889999999999887 334456788899


Q ss_pred             CceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHH-HHH
Q psy4257         245 LEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVI-DAM  322 (419)
Q Consensus       245 L~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~-~~l  322 (419)
                      |+.|++++|+++++ +..|..+++|+.|++++|++++++...+       ..+++|+.+++++|+|.|+|...|+. .|+
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl  544 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-------DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  544 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-------TTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-------hcccCCcEEEecCCcccCCCcchHHHHHHH
Confidence            99999999999887 5678889999999999999998876543       34789999999999999999988888 999


Q ss_pred             HhhcCCceeccccCCCCC
Q psy4257         323 ETINNNTKIHGETICQPD  340 (419)
Q Consensus       323 ~~~~~~~~~~~~~~c~~~  340 (419)
                      +..  ...+.+...|..+
T Consensus       545 ~~~--~~~~~~~~~C~~~  560 (570)
T 2z63_A          545 NKN--SQKEQGSAKCSGS  560 (570)
T ss_dssp             HHT--GGGEESCCBBTTT
T ss_pred             Hhc--cccCCCchhhCCC
Confidence            883  3444455588654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-36  Score=305.03  Aligned_cols=304  Identities=24%  Similarity=0.338  Sum_probs=233.4

Q ss_pred             CCCCcEEecccccccccccc-cccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~   78 (419)
                      +.+++.|++++|.+..++.. +..+++|+.|+|++|.++.++. .|..+++|+.|+|++|.|..++ ..|.++++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45778888888888887754 4558888888888888887754 6888888888888888888875 4578888888888


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +++|.+.++++..|.++++|++|+|++|.+..++ ..+..+++|+.|++++|.+.+..   +..+++|+.|++++|.+..
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            8888888888877888888888888888888764 46788888888888888887763   3345556666666665544


Q ss_pred             ccCCCCCC-----------CcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257         158 FGTRNEGK-----------NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI  226 (419)
Q Consensus       158 ~~~~~~~~-----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  226 (419)
                      +.......           .......+|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence            32110000           0001135688888888888775 45778888999999999998888888888899999999


Q ss_pred             cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257         227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG  306 (419)
Q Consensus       227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~  306 (419)
                      ++|.+.+++. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.|..++.          ..++.|+.|++++
T Consensus       286 s~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~L~~L~l~~  354 (597)
T 3oja_B          286 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL----------STHHTLKNLTLSH  354 (597)
T ss_dssp             TTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC----------CTTCCCSEEECCS
T ss_pred             CCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh----------hhcCCCCEEEeeC
Confidence            9999888754 3456889999999999998888878888899999999999887753          2478899999999


Q ss_pred             CccccccchHHHHH
Q psy4257         307 NPVLCDDSMRAVID  320 (419)
Q Consensus       307 Np~~c~~~~~~~~~  320 (419)
                      |||.|+|...|+..
T Consensus       355 N~~~~~~~~~~~~~  368 (597)
T 3oja_B          355 NDWDCNSLRALFRN  368 (597)
T ss_dssp             SCEEHHHHHHHTTT
T ss_pred             CCCCChhHHHHHHH
Confidence            99999986555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=316.29  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             ccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcc-------c-----ceecCCcceeEEec
Q psy4257         239 KTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQ-------C-----QIFGLNSTLRIYLE  305 (419)
Q Consensus       239 ~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------~-----~~~~~~~l~~l~l~  305 (419)
                      |..+++|+.|+|++|+|++++ ..|..+++|+.|+|++|+|+.++...+...-       .     ....+.++..++++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~  555 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT  555 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence            555677888888888888776 3477788888888888888777655432100       0     01124578899999


Q ss_pred             CCccccccchHHHHHHHHhhcCCc-eeccccCCCCC
Q psy4257         306 GNPVLCDDSMRAVIDAMETINNNT-KIHGETICQPD  340 (419)
Q Consensus       306 ~Np~~c~~~~~~~~~~l~~~~~~~-~~~~~~~c~~~  340 (419)
                      +|||.|+|.+.||..|+....... .......|..+
T Consensus       556 ~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             EECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             CCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence            999999999999999997632222 11233466543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-36  Score=304.13  Aligned_cols=281  Identities=21%  Similarity=0.271  Sum_probs=177.4

Q ss_pred             ccccccccccccceeecccccCcc------------------Cccccc--cccccceeecccccccC-chhhhcCCCCCC
Q psy4257          17 SLEGQLGTLSKLQLLVIEQNQLEA------------------LPSDIQ--LFSQLGSLYANNNRITS-LDGLLRGLTKLQ   75 (419)
Q Consensus        17 ~l~~~~~~~~~L~~L~L~~n~l~~------------------i~~~~~--~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~   75 (419)
                      .+|..+..+++|+.|+|++|.++.                  +|..++  ++++|++|++++|.+.+ +|..|.++++|+
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            355556667777777777777776                  777666  77777777777776554 566677777777


Q ss_pred             EEecCCCC-Ccc-cChhhhcCC------CCCCEEEccCCcCccccc--cccCCccCcEEecccccccccChhhhcCCCCc
Q psy4257          76 VFNMDFNQ-ITM-VRRDEFQNL------HNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL  145 (419)
Q Consensus        76 ~L~l~~n~-l~~-~~~~~~~~~------~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  145 (419)
                      .|++++|+ +++ ..|..+..+      ++|++|++++|+++.+|.  .+..+++|++|++++|.+.+..+ .|..+++|
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            77777776 666 445555554      677777777777777766  67777777777777777775455 66666777


Q ss_pred             cEEEcCCCCCccccCCCCCCCcccCccc-ccEEEcCCCCCcCchhhhcCCC--CCcEEEcCCCCCCCcCcccCC------
Q psy4257         146 RTVDLSYNKINKFGTRNEGKNQVQGVTN-IFELKLQHNEIENLDGALMGIH--GLSRLDLSHNKLRTISPDDFI------  216 (419)
Q Consensus       146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~------  216 (419)
                      +.|++++|++..++.      .+..+++ |++|++++|.+..+|..+....  +|++|++++|.+.+..|..|.      
T Consensus       356 ~~L~L~~N~l~~lp~------~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          356 ASLNLAYNQITEIPA------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             SEEECCSSEEEECCT------TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CEEECCCCccccccH------hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            777777777664432      3555666 7777777777666665554433  566666666666665555555      


Q ss_pred             -CCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCC-CC-------CCcCEEecCCCcccccchhhhh
Q psy4257         217 -GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH-GL-------PVLCKADLAHNNIKAINIQLAL  287 (419)
Q Consensus       217 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~-~l-------~~L~~L~L~~N~l~~~~~~~~~  287 (419)
                       .+.+|++|+|++|.+..++...+..+++|++|+|++|+++.+|..+. ..       ++|+.|+|++|+|+.++..+..
T Consensus       430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence             55566666666666666665555556666666666666666553322 11       2566666666666655543220


Q ss_pred             hcccceecCCcceeEEecCCccc
Q psy4257         288 KTQCQIFGLNSTLRIYLEGNPVL  310 (419)
Q Consensus       288 ~~~~~~~~~~~l~~l~l~~Np~~  310 (419)
                            ..+++|+.|++++|.+.
T Consensus       510 ------~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          510 ------TTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             ------TTCTTCCEEECCSSCCS
T ss_pred             ------ccCCCcCEEECCCCCCC
Confidence                  02455555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=283.23  Aligned_cols=259  Identities=24%  Similarity=0.383  Sum_probs=167.1

Q ss_pred             cceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        28 L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      ...++.++..++.+|..+.  .+++.|+|++|.|..++ ..|.++++|+.|+|++|+|..+.+..|.++++|++|+|++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            3445555555555554432  34555555555555443 34455555555555555555555555555555555555555


Q ss_pred             cCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       107 ~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                      +|+.++. .|..+++|++|+|++|.+..+....|..+++|+.|++++|                            +.+.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~----------------------------~~l~  174 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL----------------------------KRLS  174 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC----------------------------TTCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC----------------------------CCcc
Confidence            5554432 3444555555555555554444444444445555554442                            2333


Q ss_pred             Cch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCC
Q psy4257         186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFH  263 (419)
Q Consensus       186 ~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~  263 (419)
                      .++ ..+.++++|++|++++|.++.+.  .+..+++|++|+|++|.+.++.+..|..+++|+.|+|++|+|..++ ..|.
T Consensus       175 ~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          175 YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             EECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred             eeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence            333 34666777778888887777663  4677788888888888888887777888888888888888888875 4677


Q ss_pred             CCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257         264 GLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI  325 (419)
Q Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~  325 (419)
                      .+++|+.|+|++|+|+.++...+.       .+++|+.|++++|||.|||.+.|+..|++..
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~  307 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPHDLFT-------PLHHLERIHLHHNPWNCNCDILWLSWWIKDM  307 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTS-------SCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred             CCCCCCEEECCCCCCCccChhHhc-------cccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence            888888888888888888776443       4788999999999999999999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.6e-35  Score=288.82  Aligned_cols=302  Identities=24%  Similarity=0.269  Sum_probs=263.0

Q ss_pred             CCCCCcEEeccccccccc-ccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEE
Q psy4257           1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF   77 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L   77 (419)
                      ++++|++|+|++|.++.+ +..|..+++|+.|+|++|.++.+|. .|..+++|++|++++|.+..+ +..|..+++|+.|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            478999999999999977 5678889999999999999999976 479999999999999999986 5689999999999


Q ss_pred             ecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257          78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus        78 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      ++++|.+.++.+..|.++++|+.|++++|+++.++ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            99999999999999999999999999999999886 46889999999999999999988889999999999999998764


Q ss_pred             cccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccC
Q psy4257         157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  235 (419)
Q Consensus       157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  235 (419)
                      .....     ......+|+.|++++|.++.++ ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|++.++.
T Consensus       214 ~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (477)
T 2id5_A          214 DTMTP-----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE  288 (477)
T ss_dssp             CEECT-----TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred             cccCc-----ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence            43221     1223448999999999999998 56789999999999999999999999999999999999999999999


Q ss_pred             chhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         236 ETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       236 ~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      +..|..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|.+..--...+.        ......+.+.++.+.|.+.
T Consensus       289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--------~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--------FRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--------HTTTTSSCCTTCCCBEEES
T ss_pred             HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--------HhhhhccccCccCceeCCc
Confidence            9999999999999999999999984 578999999999999999743322221        1222345677888889775


Q ss_pred             h
Q psy4257         315 M  315 (419)
Q Consensus       315 ~  315 (419)
                      .
T Consensus       361 ~  361 (477)
T 2id5_A          361 E  361 (477)
T ss_dssp             G
T ss_pred             h
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.6e-34  Score=270.02  Aligned_cols=286  Identities=23%  Similarity=0.396  Sum_probs=237.2

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|+++++.+..+++ +..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE  119 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred             cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence            5689999999999988865 7889999999999999998876 889999999999999999987 488999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR  161 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (419)
                      |.+.++.+  +..+++|++|++++|........+..+++|++|++++|.+.+...  +..+++|+.|++++|.+..++. 
T Consensus       120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  194 (347)
T 4fmz_A          120 DNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-  194 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred             CcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence            99998855  889999999999999544433558889999999999999887643  7888999999999998876542 


Q ss_pred             CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccC
Q psy4257         162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF  241 (419)
Q Consensus       162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  241 (419)
                            +..+++|+.|++++|.+..++. +..+++|++|++++|.++++.+  +..+++|++|++++|.+.+++  .+..
T Consensus       195 ------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~  263 (347)
T 4fmz_A          195 ------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKD  263 (347)
T ss_dssp             ------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             ------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhc
Confidence                  5677888888888888887765 7778888888888888887744  778888888888888888763  4677


Q ss_pred             CCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       242 l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      +++|++|++++|++..++ .+..+++|+.|++++|.++..+...+.       .+++|+.+++++|++.....
T Consensus       264 l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG-------GLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH-------TCTTCSEEECCSSSCCCCGG
T ss_pred             CCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh-------ccccCCEEEccCCccccccC
Confidence            888888888888888874 577888888888888888877765443       37788888888888766443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-35  Score=304.79  Aligned_cols=297  Identities=24%  Similarity=0.274  Sum_probs=159.2

Q ss_pred             CCCCcEEeccccccc-cccccccccc-ccceeecccccCc-cCcccccc--ccccceeecccccccC-chhhhcCCCCCC
Q psy4257           2 LTDLNWLFLNNNRLK-SLEGQLGTLS-KLQLLVIEQNQLE-ALPSDIQL--FSQLGSLYANNNRITS-LDGLLRGLTKLQ   75 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-~l~~~~~~~~-~L~~L~L~~n~l~-~i~~~~~~--~~~L~~L~l~~n~i~~-l~~~~~~l~~L~   75 (419)
                      +++|++|++++|.++ .++..+..++ +|+.|++++|.++ .++..+..  +++|++|++++|.+.+ +|..+..+++|+
T Consensus       342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred             CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence            566777777777776 5555555554 6666666666655 33333333  4555555555555553 445555555555


Q ss_pred             EEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCC
Q psy4257          76 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK  154 (419)
Q Consensus        76 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  154 (419)
                      .|++++|++.+..+..|.++++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            5555555555555555555555555555555555 345555555555555555555555555555555555555555555


Q ss_pred             CccccCCCCCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcc--------------------
Q psy4257         155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPD--------------------  213 (419)
Q Consensus       155 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------------------  213 (419)
                      +.+..+     ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|.                    
T Consensus       502 l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          502 LTGEIP-----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             cCCcCC-----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            543321     13444555555555555554 3444555555555555555544322221                    


Q ss_pred             --------------------------------------------------cCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257         214 --------------------------------------------------DFIGLDSLKMLDISHNLLTTLEETSKTFLP  243 (419)
Q Consensus       214 --------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  243 (419)
                                                                        .|..+++|+.|||++|++++..+..++.++
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                              122234555555555555555555555555


Q ss_pred             CCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257         244 ALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL  310 (419)
Q Consensus       244 ~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~  310 (419)
                      +|+.|+|++|++++ +|..|..+++|+.|||++|++++..+..+       ..+..|+.+++++|++.
T Consensus       657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-------~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-------SALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-------GGCCCCSEEECCSSEEE
T ss_pred             cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-------hCCCCCCEEECcCCccc
Confidence            55555555555553 45555555555555555555553333221       22455555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.1e-34  Score=268.98  Aligned_cols=280  Identities=26%  Similarity=0.396  Sum_probs=249.0

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|+.|++++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence            6799999999999998876 888999999999999999985 68999999999999999999987 88999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR  161 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (419)
                      |......+ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+...  +..+++|+.|++++|.+..... 
T Consensus       142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence            96555433 48999999999999999998855 8899999999999999988643  8889999999999999987642 


Q ss_pred             CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccC
Q psy4257         162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF  241 (419)
Q Consensus       162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  241 (419)
                            +..+++|++|++++|.+..++. +..+++|++|++++|.++++  ..+..+++|++|++++|.+.+++  .+..
T Consensus       217 ------~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~  285 (347)
T 4fmz_A          217 ------VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNN  285 (347)
T ss_dssp             ------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGG
T ss_pred             ------hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcC
Confidence                  6788999999999999999887 88899999999999999987  46889999999999999999984  5778


Q ss_pred             CCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257         242 LPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV  309 (419)
Q Consensus       242 l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~  309 (419)
                      +++|+.|++++|++..++ ..+..+++|+.|++++|+++++++         +..+++|+.+++++|++
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---------LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---------GGGCTTCSEESSSCC--
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---------hhhhhccceeehhhhcc
Confidence            999999999999999865 568899999999999999998876         12388999999999986

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.2e-34  Score=291.67  Aligned_cols=300  Identities=20%  Similarity=0.225  Sum_probs=222.1

Q ss_pred             CCCcEEeccccccccc-ccccccccccceeecccccCccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEec
Q psy4257           3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM   79 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l   79 (419)
                      +.+++|++++|.|+.+ +..|..+++|++|+|++|.+..+ |..|.++++|++|++++|.+..+ +..|.++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            3689999999999987 46788899999999999999876 66799999999999999999886 678999999999999


Q ss_pred             CCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCcc--EEEcCCCCCc
Q psy4257          80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR--TVDLSYNKIN  156 (419)
Q Consensus        80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~  156 (419)
                      ++|++.++.+..|.++++|++|++++|++..++ ..+..+++|++|++++|.+.+..+..|..+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            999999988888999999999999999999763 3445589999999999999998888899999998  8899999887


Q ss_pred             cccCCCCC----------------------------------------------------------------------CC
Q psy4257         157 KFGTRNEG----------------------------------------------------------------------KN  166 (419)
Q Consensus       157 ~~~~~~~~----------------------------------------------------------------------~~  166 (419)
                      .+.+..+.                                                                      ..
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            65533211                                                                      11


Q ss_pred             cccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc-ccCchhccCCCCC
Q psy4257         167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPAL  245 (419)
Q Consensus       167 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  245 (419)
                      .+..+++|++|++++|.++.+|..+..+++|++|++++|.+.++.+..+..+++|++|++++|.+. .++...+..+++|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            244556677777777777766666666677777777777776665666666666666666666655 3444445666666


Q ss_pred             ceEeCcCCccccc---CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257         246 EELFVSHNSLTRL---DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV  309 (419)
Q Consensus       246 ~~L~L~~N~i~~l---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~  309 (419)
                      ++|++++|.+..+   +..+..+++|+.|++++|.+..+.+..+.       .+++|+.+++++|.+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-------ECPQLELLDLAFTRL  412 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-------TCTTCSEEECTTCCE
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-------CCccCCeEECCCCcC
Confidence            6666666666654   34466666666666666666655443321       234444455544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.3e-35  Score=302.37  Aligned_cols=226  Identities=25%  Similarity=0.267  Sum_probs=108.4

Q ss_pred             CCCCcEEeccccccc-ccccc-cccccccceeecccccCc-cCcccccccc-ccceeecccccccC-chhhhcC--CCCC
Q psy4257           2 LTDLNWLFLNNNRLK-SLEGQ-LGTLSKLQLLVIEQNQLE-ALPSDIQLFS-QLGSLYANNNRITS-LDGLLRG--LTKL   74 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~n~l~-~i~~~~~~~~-~L~~L~l~~n~i~~-l~~~~~~--l~~L   74 (419)
                      +++|++|++++|.+. .++.. +..+++|+.|++++|.++ .+|..+..+. +|+.|++++|.+.+ ++..+..  +++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            344555555555544 34322 444555555555555544 4444444444 45555555554443 2222222  4445


Q ss_pred             CEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCC
Q psy4257          75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN  153 (419)
Q Consensus        75 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  153 (419)
                      +.|++++|++.+..+..|.++++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            55555555555444444555555555555555544 33444455555555555555555444444555555555555555


Q ss_pred             CCccccCCCCCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc
Q psy4257         154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  232 (419)
Q Consensus       154 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  232 (419)
                      ++.+..+     ..+..+++|++|++++|++. .+|.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       477 ~l~~~~p-----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          477 DLTGEIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCCSCCC-----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccCcCC-----HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            4443221     13444455555555555544 33444444555555555555554444444555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.2e-35  Score=296.97  Aligned_cols=292  Identities=21%  Similarity=0.296  Sum_probs=214.3

Q ss_pred             CCCCCcEEecccccccc------------------cccccc--cccccceeecccccCc-cCccccccccccceeecccc
Q psy4257           1 GLTDLNWLFLNNNRLKS------------------LEGQLG--TLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN   59 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~~------------------l~~~~~--~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n   59 (419)
                      ++++|++|+|++|.++.                  +|..+.  .+++|++|+|++|.+. .+|..|..+++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            36889999999999998                  888888  8999999999999877 67888999999999999999


Q ss_pred             c-ccC--chhhhcCC------CCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEeccc
Q psy4257          60 R-ITS--LDGLLRGL------TKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSH  128 (419)
Q Consensus        60 ~-i~~--l~~~~~~l------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~  128 (419)
                      . +++  +|..+..+      ++|+.|++++|++..++. ..|.++++|++|++++|++. .+| .+..+++|++|++++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence            8 885  78777665      899999999999996654 37999999999999999999 888 888889999999999


Q ss_pred             ccccccChhhhcCCCC-ccEEEcCCCCCccccCCCCCCCcccC--cccccEEEcCCCCCcCc-hhhhc-------CCCCC
Q psy4257         129 NQLTEFLLDDIRGLKR-LRTVDLSYNKINKFGTRNEGKNQVQG--VTNIFELKLQHNEIENL-DGALM-------GIHGL  197 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~-~~~~~-------~l~~L  197 (419)
                      |.+.. .+..+..+++ |+.|++++|++..++..      +..  +.+|+.|++++|.+... |..+.       .+.+|
T Consensus       363 N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~~lp~~------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          363 NQITE-IPANFCGFTEQVENLSFAHNKLKYIPNI------FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             SEEEE-CCTTSEEECTTCCEEECCSSCCSSCCSC------CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             Ccccc-ccHhhhhhcccCcEEEccCCcCcccchh------hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            99884 5566888888 99999999988865432      222  23666677777666542 33343       45566


Q ss_pred             cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC-------CCceEeCcCCcccccCccCC--CCCCc
Q psy4257         198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP-------ALEELFVSHNSLTRLDKDFH--GLPVL  268 (419)
Q Consensus       198 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~l~~~~~--~l~~L  268 (419)
                      ++|++++|.++.+....+..+++|++|+|++|+++.++...+....       +|+.|+|++|+|+.+|..+.  .+++|
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  515 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL  515 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTC
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCc
Confidence            6666666666666555555566666666666666666555444332       66666666666666665554  66666


Q ss_pred             CEEecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       269 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      +.|+|++|+|++++..+.        .+++|+.|++++|+
T Consensus       516 ~~L~Ls~N~l~~ip~~~~--------~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          516 VGIDLSYNSFSKFPTQPL--------NSSTLKGFGIRNQR  547 (636)
T ss_dssp             CEEECCSSCCSSCCCGGG--------GCSSCCEEECCSCB
T ss_pred             CEEECCCCCCCCcChhhh--------cCCCCCEEECCCCc
Confidence            666666666666554322        25555666664443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=7.4e-34  Score=277.43  Aligned_cols=259  Identities=24%  Similarity=0.377  Sum_probs=195.2

Q ss_pred             cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccc
Q psy4257          51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN  129 (419)
Q Consensus        51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n  129 (419)
                      ...+++++..+..+|..+.  ++|+.|+|++|+|.++.+..|.++++|++|+|++|.|..++ ..|..+++|++|+|++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            4556666666666664332  46666777777766666666666677777777777666653 45666667777777777


Q ss_pred             cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-CCCcCch-hhhcCCCCCcEEEcCCCCC
Q psy4257         130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKL  207 (419)
Q Consensus       130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~-~~~~~l~~L~~L~Ls~n~l  207 (419)
                      .+.++.+..|..+++|++|++++|++..++..     .+..+++|+.|++++ +.+..++ ..+..+++|++|+|++|.+
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHh-----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            76666666666667777777777766655432     455666777777776 4555554 3577788899999999988


Q ss_pred             CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhh
Q psy4257         208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLA  286 (419)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (419)
                      +++.  .+..+++|++|+|++|.+.++.+..|..+++|+.|+|++|++..++ ..|..+++|+.|+|++|+|+.++...+
T Consensus       209 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          209 KDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             SSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            8773  4778889999999999999988888889999999999999998875 568889999999999999998887654


Q ss_pred             hhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257         287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI  325 (419)
Q Consensus       287 ~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~  325 (419)
                      .       .+++|+.|++++|||.|||.+.|+..|++..
T Consensus       287 ~-------~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~  318 (452)
T 3zyi_A          287 T-------PLRYLVELHLHHNPWNCDCDILWLAWWLREY  318 (452)
T ss_dssp             T-------TCTTCCEEECCSSCEECSTTTHHHHHHHHHH
T ss_pred             c-------cccCCCEEEccCCCcCCCCCchHHHHHHHHh
Confidence            3       4788999999999999999999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=278.04  Aligned_cols=300  Identities=19%  Similarity=0.263  Sum_probs=180.9

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL  103 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  103 (419)
                      |+.....+++++.++.+|..+.  ++|++|++++|.+..++. .|.++++|+.|++++|++.++.+..|.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            4444445555555555554432  355555555555555542 4555555555555555555555555555555555555


Q ss_pred             cCCcCcccccc-ccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCC-CCccccCCCCCCCcccCcccccEEEcC
Q psy4257         104 QNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYN-KINKFGTRNEGKNQVQGVTNIFELKLQ  180 (419)
Q Consensus       104 ~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~l~  180 (419)
                      ++|+++.++.. +..+++|++|++++|.+.++.. ..|..+++|++|++++| .+..++..     .+..+++|++|+++
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~l~~L~~L~l~  182 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-----DFAGLTFLEELEID  182 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEE
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-----HccCCCCCCEEECC
Confidence            55555555433 4555555555555555555433 34555555555555555 24433221     34455555566666


Q ss_pred             CCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc---cCCCCCceEeCcCCccc
Q psy4257         181 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK---TFLPALEELFVSHNSLT  256 (419)
Q Consensus       181 ~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~i~  256 (419)
                      +|.+..+ +..+..+++|++|++++|.+..+....+..+++|+.|++++|.+.++....+   .....++.++|+++.+.
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence            5555544 3455556666666666666655543334445666666666666665443222   12445666666666554


Q ss_pred             c-----cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCce
Q psy4257         257 R-----LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTK  330 (419)
Q Consensus       257 ~-----l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~  330 (419)
                      +     +|..+..+++|+.|++++|+|+.++..++.       .+++|+++++++|+|.|+|. +.|+..|++.....  
T Consensus       263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~-------~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~--  333 (353)
T 2z80_A          263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--  333 (353)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTT-------TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT--
T ss_pred             CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHh-------cCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcccc--
Confidence            4     666788889999999999999988876432       47889999999999999996 88999999985443  


Q ss_pred             eccccCCCCC
Q psy4257         331 IHGETICQPD  340 (419)
Q Consensus       331 ~~~~~~c~~~  340 (419)
                      +.....|..+
T Consensus       334 ~~~~~~C~~p  343 (353)
T 2z80_A          334 EQGSAKCSGS  343 (353)
T ss_dssp             EESCCBBTTT
T ss_pred             CCCCcccCCC
Confidence            3556778764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=2e-34  Score=267.01  Aligned_cols=276  Identities=23%  Similarity=0.282  Sum_probs=181.2

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccC--hhhhcCCCCCCEEEccC
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVR--RDEFQNLHNLDSISLQN  105 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~  105 (419)
                      +.++++++.++.+|..+.  ++|++|++++|.+..++. .|.++++|+.|++++|++..+.  +..+.++++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            456677777777765442  567777777777777653 4667777777777777776543  34566677777777777


Q ss_pred             CcCccccccccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      |.+..++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+.....                        
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------  143 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------------------------  143 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST------------------------
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch------------------------
Confidence            7777777667777777777777777776544 456667777777777776654322                        


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cC
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DF  262 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~  262 (419)
                          ..+..+++|++|++++|.+.+ ..+..|..+++|++|+|++|.+.++.+..+..+++|+.|+|++|++++++. .+
T Consensus       144 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          144 ----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             ----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             ----hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                233445555555555555544 334555556666666666666666555555556666666666666666543 45


Q ss_pred             CCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         263 HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       263 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      ..+++|+.|++++|++.+..+..+       ..+ ++++.+++++|+|.|+|.+.|+..|++.............|..+.
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~-------~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQEL-------QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSC-------CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             cCcccCCEeECCCCCCcccCHHHH-------HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            666667777777776666554322       224 478899999999999999999999999865444444556675543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6.6e-34  Score=266.35  Aligned_cols=277  Identities=23%  Similarity=0.332  Sum_probs=242.8

Q ss_pred             cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      .+|+.++++++.++.+|..+.  ++|+.|++++|.+..++ ..|..+++|++|++++|++.++.+..|.++++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            379999999999999987654  68999999999999986 478999999999999999999999999999999999999


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|+++.+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+.....   ....+..+++|+.|++++|.+
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB---CTTGGGGCTTCCEEECCSSCC
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc---ChhhccCCCCcCEEECCCCcc
Confidence            999999987665  799999999999999988899999999999999999875321   223577899999999999999


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCC
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHG  264 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~  264 (419)
                      ..+|..+.  ++|++|++++|.++++.+..|..+++|++|+|++|.+.++....+..+++|++|+|++|++..+|..+..
T Consensus       184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  261 (330)
T 1xku_A          184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD  261 (330)
T ss_dssp             CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred             ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence            99886554  7899999999999999889999999999999999999999888888899999999999999999999999


Q ss_pred             CCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257         265 LPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD  312 (419)
Q Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  312 (419)
                      +++|++|++++|+|+.++...+..... ......+..+++.+||+.+.
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~-~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSC-CTTSCCCSEEECCSSSSCGG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCccc-ccccccccceEeecCccccc
Confidence            999999999999999998876532111 11246788999999998653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.8e-34  Score=269.11  Aligned_cols=290  Identities=23%  Similarity=0.347  Sum_probs=242.6

Q ss_pred             ccccccccccccc-c-----cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCC
Q psy4257          12 NNRLKSLEGQLGT-L-----SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI   84 (419)
Q Consensus        12 ~n~l~~l~~~~~~-~-----~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l   84 (419)
                      .+.+..+|..+.. |     .+|+.++++++.++.+|..+.  ++|+.|++++|.+..++ ..|.++++|++|++++|++
T Consensus        13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   90 (332)
T 2ft3_A           13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI   90 (332)
T ss_dssp             ------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence            3445556543332 2     379999999999999987663  68999999999999985 5799999999999999999


Q ss_pred             cccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC
Q psy4257          85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG  164 (419)
Q Consensus        85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  164 (419)
                      .++.+..|.++++|++|++++|+++.+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+.....   .
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~  165 (332)
T 2ft3_A           91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---E  165 (332)
T ss_dssp             CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS---C
T ss_pred             CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC---C
Confidence            99999999999999999999999999987665  899999999999999888889999999999999999975322   1


Q ss_pred             CCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCC
Q psy4257         165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA  244 (419)
Q Consensus       165 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  244 (419)
                      ...+..+ +|+.|++++|.+..+|..+.  ++|++|++++|.+.++.+..|..+++|++|+|++|.+.++.+..+..+++
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  242 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT  242 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred             cccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence            2245555 89999999999999886554  78999999999999998899999999999999999999999888999999


Q ss_pred             CceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257         245 LEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD  312 (419)
Q Consensus       245 L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  312 (419)
                      |++|+|++|+++.+|..+..+++|+.|++++|+|+.++...+..... ......+..+++.+||+.+.
T Consensus       243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~N~~~~~  309 (332)
T 2ft3_A          243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-GVKRAYYNGISLFNNPVPYW  309 (332)
T ss_dssp             CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-CSSSCCBSEEECCSSSSCGG
T ss_pred             CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc-ccccccccceEeecCccccc
Confidence            99999999999999998999999999999999999998775532110 01146688999999998753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-34  Score=298.92  Aligned_cols=292  Identities=21%  Similarity=0.264  Sum_probs=211.3

Q ss_pred             CCCCCcEEecccccccc------------------cccccc--cccccceeecccccCc-cCccccccccccceeecccc
Q psy4257           1 GLTDLNWLFLNNNRLKS------------------LEGQLG--TLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN   59 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~~------------------l~~~~~--~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n   59 (419)
                      ++++|++|+|++|.++.                  +|..+.  .+++|+.|+|++|.+. .+|..|..+++|+.|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            36899999999999998                  888877  8999999999999866 67888999999999999999


Q ss_pred             c-ccC--chhhhcCC-------CCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257          60 R-ITS--LDGLLRGL-------TKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH  128 (419)
Q Consensus        60 ~-i~~--l~~~~~~l-------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~  128 (419)
                      . +++  +|..+..+       ++|+.|++++|++..++. ..|.++++|+.|+|++|+++.+| .+..+++|+.|+|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence            8 886  77655544       499999999999996654 37999999999999999999998 889999999999999


Q ss_pred             ccccccChhhhcCCCC-ccEEEcCCCCCccccCCCCCCCcccCc--ccccEEEcCCCCCcCchhh----hc--CCCCCcE
Q psy4257         129 NQLTEFLLDDIRGLKR-LRTVDLSYNKINKFGTRNEGKNQVQGV--TNIFELKLQHNEIENLDGA----LM--GIHGLSR  199 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~----~~--~l~~L~~  199 (419)
                      |.+.. .+..+..+++ |+.|++++|++..++.      .+..+  .+|+.|++++|.+......    +.  .+.+|+.
T Consensus       605 N~l~~-lp~~l~~l~~~L~~L~Ls~N~L~~lp~------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          605 NQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPN------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             SCCSC-CCTTSCEECTTCCEEECCSSCCCSCCS------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             Ccccc-chHHHhhccccCCEEECcCCCCCcCch------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            99984 5667888888 9999999999886543      22222  2366666666666432211    11  2335666


Q ss_pred             EEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC-------CCceEeCcCCcccccCccCC--CCCCcCE
Q psy4257         200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP-------ALEELFVSHNSLTRLDKDFH--GLPVLCK  270 (419)
Q Consensus       200 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~l~~~~~--~l~~L~~  270 (419)
                      |+|++|.+..++...+..+++|+.|+|++|++..++...+....       +|+.|+|++|+|+.+|..+.  .+++|+.
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~  757 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN  757 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence            66666666665444444566666666666666665555444322       66666666666666665554  6666666


Q ss_pred             EecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       271 L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      |+|++|+|++++..+.        .+++|+.|+|++|+
T Consensus       758 L~Ls~N~L~~lp~~l~--------~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          758 MDVSYNCFSSFPTQPL--------NSSQLKAFGIRHQR  787 (876)
T ss_dssp             EECCSSCCSSCCCGGG--------GCTTCCEEECCCCB
T ss_pred             EEeCCCCCCccchhhh--------cCCCCCEEECCCCC
Confidence            6666666666544322        35556666665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5e-34  Score=278.96  Aligned_cols=277  Identities=27%  Similarity=0.345  Sum_probs=237.1

Q ss_pred             CCCCCcEEeccccccc-ccc-cccccccccceeecccccCccC-ccccccccccceeecccccccC-chh--hhcCCCCC
Q psy4257           1 GLTDLNWLFLNNNRLK-SLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITS-LDG--LLRGLTKL   74 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~-~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~-l~~--~~~~l~~L   74 (419)
                      ++++|++|++++|.+. .++ ..|..+++|++|+|++|.++.+ |..|..+++|++|++++|.+.+ ++.  .|..+++|
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            4789999999999986 553 5678899999999999999976 6789999999999999999987 333  38899999


Q ss_pred             CEEecCCCCCcccChhh-hcCCCCCCEEEccCCcCccc-ccccc----------------------------------CC
Q psy4257          75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM-NSSLS----------------------------------GL  118 (419)
Q Consensus        75 ~~L~l~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~i-~~~l~----------------------------------~l  118 (419)
                      ++|++++|++.++.+.. |.++++|++|++++|.+..+ +..+.                                  .+
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            99999999999987765 89999999999999998865 23332                                  33


Q ss_pred             ccCcEEecccccccccChhhhcC---------------------------------------CCCccEEEcCCCCCcccc
Q psy4257         119 TKLAYLYLSHNQLTEFLLDDIRG---------------------------------------LKRLRTVDLSYNKINKFG  159 (419)
Q Consensus       119 ~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~  159 (419)
                      ++|++|++++|.+.+..+..+..                                       .++|+.|++++|.+....
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            67999999999887654443321                                       257888999999888764


Q ss_pred             CCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257         160 TRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS  238 (419)
Q Consensus       160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  238 (419)
                      +.     .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.++.+..|..+++|++|+|++|++.++.+..
T Consensus       292 ~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          292 KS-----VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             TT-----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             hh-----hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            43     678899999999999999987 467889999999999999999999999999999999999999999998888


Q ss_pred             ccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCcccccc
Q psy4257         239 KTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       239 ~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                      |..+++|++|+|++|+|++++. .|..+++|+.|++++|++..-.
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            9999999999999999999885 5789999999999999998643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.1e-34  Score=293.84  Aligned_cols=271  Identities=25%  Similarity=0.285  Sum_probs=187.5

Q ss_pred             CCCCcEEeccccccc-ccccccccccccceeeccccc-Ccc--Ccccccccc-------ccceeecccccccCchh--hh
Q psy4257           2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQ-LEA--LPSDIQLFS-------QLGSLYANNNRITSLDG--LL   68 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~-l~~--i~~~~~~~~-------~L~~L~l~~n~i~~l~~--~~   68 (419)
                      +++|++|+|++|.+. .+|..+..+++|+.|+|++|+ ++.  +|..+..+.       +|+.|++++|.+..+|.  .|
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            688999999999854 678888899999999999998 874  787777666       99999999999999987  89


Q ss_pred             cCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCcc-CcEEecccccccccChhhhcCCCC--c
Q psy4257          69 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLTEFLLDDIRGLKR--L  145 (419)
Q Consensus        69 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L  145 (419)
                      ..+++|+.|++++|++..++  .|..+++|+.|+|++|++..+|..+..+++ |+.|+|++|.+.. .+..+..+..  |
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L  646 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM  646 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCE
T ss_pred             hcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCC
Confidence            99999999999999999665  789999999999999999999888999998 9999999999885 4566665543  8


Q ss_pred             cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCCCC------
Q psy4257         146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGL------  218 (419)
Q Consensus       146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l------  218 (419)
                      +.|++++|++.+..+............+|+.|++++|.+..+|..+ ..+++|+.|+|++|.+..++...+...      
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            8888888888654322110000112235666666666666555433 245555555555555555433333322      


Q ss_pred             -CCCcEEEccCCcCcccCchhc-cCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC
Q psy4257         219 -DSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH  275 (419)
Q Consensus       219 -~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~  275 (419)
                       ++|+.|+|++|+++.++...+ ..+++|+.|+|++|+|.++|..+..+++|+.|+|++
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence             155555555555554443322 245555555555555555554444555555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4e-34  Score=289.70  Aligned_cols=135  Identities=24%  Similarity=0.290  Sum_probs=108.3

Q ss_pred             CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEec
Q psy4257           3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM   79 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l   79 (419)
                      ++|++|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|.++++|++|++++|.+..+ |..|.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            46888888888888775 3677788888888888888876 45688888888888888888887 677888888888888


Q ss_pred             CCCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChh
Q psy4257          80 DFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLD  137 (419)
Q Consensus        80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~  137 (419)
                      ++|++.++.+..|+++.+|++|++++|.+..  +|..+..+++|++|++++|.+.+..+.
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            8888888877778888888888888888874  577788888888888888877765443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4e-33  Score=273.33  Aligned_cols=259  Identities=27%  Similarity=0.423  Sum_probs=134.6

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n   82 (419)
                      ++|+.|+++++.+..+++ +..+++|++|+|++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|
T Consensus        46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence            345556666665555543 4445566666666665555543 5555556666666665555544 555555666666555


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccccc--------------------cccCCccCcEEecccccccccChhhhcCC
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSMNS--------------------SLSGLTKLAYLYLSHNQLTEFLLDDIRGL  142 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  142 (419)
                      .+.++.+  +.++++|++|++++|.+..++.                    .+..+++|++|++++|.+.+.  ..+..+
T Consensus       123 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l  198 (466)
T 1o6v_A          123 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL  198 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             CCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccC
Confidence            5555532  5555555555555555443321                    244556666666666666554  235566


Q ss_pred             CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257         143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK  222 (419)
Q Consensus       143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  222 (419)
                      ++|+.|++++|.+....+       +..+++|++|++++|.+..++ .+..+++|+.|++++|.+.++.+  +..+++|+
T Consensus       199 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  268 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT  268 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             CCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence            666666666666654431       233445555555555554442 24444555555555555544422  44444555


Q ss_pred             EEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257         223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       223 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                      +|++++|.+.+++.  +..+++|+.|++++|++.+++. +..+++|+.|++++|+++++
T Consensus       269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred             EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence            55555554444433  3344444444444444444432 34444444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.1e-32  Score=257.93  Aligned_cols=284  Identities=19%  Similarity=0.308  Sum_probs=242.8

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~   81 (419)
                      +++.++++++.++.+|..+.  ++|+.|+|++|.++.++. .|..+++|++|++++|.+..+ +..|..+++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            68999999999999887654  689999999999998865 699999999999999999998 77899999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccc--cChhhhcCCCCccEEEcCCCCCccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTE--FLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |++..++...+   ++|++|++++|.+..++ ..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+..+
T Consensus       110 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            99998865543   79999999999999885 468899999999999999864  6677899999999999999999877


Q ss_pred             cCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257         159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  237 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  237 (419)
                      +..        ..++|++|++++|.+..+ +..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+..++. 
T Consensus       187 ~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-  257 (330)
T 1xku_A          187 PQG--------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-  257 (330)
T ss_dssp             CSS--------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred             Ccc--------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-
Confidence            543        127899999999999987 4678899999999999999999988889999999999999999998865 


Q ss_pred             hccCCCCCceEeCcCCcccccCc-cCC------CCCCcCEEecCCCcccc--cchhhhhhcccceecCCcceeEEecCCc
Q psy4257         238 SKTFLPALEELFVSHNSLTRLDK-DFH------GLPVLCKADLAHNNIKA--INIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       238 ~~~~l~~L~~L~L~~N~i~~l~~-~~~------~l~~L~~L~L~~N~l~~--~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      .+..+++|++|++++|+|+.++. .|.      ....++.|++++|.+..  +++.       .+..+..++.+++++|.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-------~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-------TFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-------GGTTCCCGGGEEC----
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc-------ccccccceeEEEecccC
Confidence            46779999999999999999873 343      24789999999999875  3333       23347788899999884

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-32  Score=269.78  Aligned_cols=281  Identities=26%  Similarity=0.419  Sum_probs=196.7

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS  143 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence            5778888888888887765 7778888888888888887765 7788888888888888887765 77778888888887


Q ss_pred             CCCcccCh-------------------hhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCC
Q psy4257          82 NQITMVRR-------------------DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL  142 (419)
Q Consensus        82 n~l~~~~~-------------------~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  142 (419)
                      |.+.++..                   ..+.++++|++|++++|.+..++ .+..+++|++|++++|.+.+..+  +..+
T Consensus       144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l  220 (466)
T 1o6v_A          144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGIL  220 (466)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred             CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--cccc
Confidence            77665421                   23566778888888888888774 47778888888888888877543  6667


Q ss_pred             CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257         143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK  222 (419)
Q Consensus       143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  222 (419)
                      ++|+.|++++|++..++       .+..+++|+.|++++|.+..++. +..+++|++|++++|.+.++.+  +..+++|+
T Consensus       221 ~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  290 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIG-------TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALT  290 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             CCCCEEECCCCCcccch-------hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence            78888888888776542       34566677777777777766654 5666677777777777766533  56666777


Q ss_pred             EEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeE
Q psy4257         223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRI  302 (419)
Q Consensus       223 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l  302 (419)
                      +|++++|++.++++  +..+++|+.|++++|++.+++. +..+++|+.|++++|++++++.         +..+++|+.+
T Consensus       291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---------l~~l~~L~~L  358 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS---------LANLTNINWL  358 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG---------GTTCTTCCEE
T ss_pred             eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh---------hccCCCCCEE
Confidence            77777776666544  4556666666666666666543 5566666666666666665521         2235556666


Q ss_pred             EecCCccc
Q psy4257         303 YLEGNPVL  310 (419)
Q Consensus       303 ~l~~Np~~  310 (419)
                      ++++|++.
T Consensus       359 ~l~~n~l~  366 (466)
T 1o6v_A          359 SAGHNQIS  366 (466)
T ss_dssp             ECCSSCCC
T ss_pred             eCCCCccC
Confidence            66666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.2e-33  Score=260.47  Aligned_cols=283  Identities=22%  Similarity=0.323  Sum_probs=242.6

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~   81 (419)
                      +++.++++++.++.+|..+.  ++|+.|+|++|.++.++ ..|..+++|++|++++|.+..+ +..|.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            58999999999999987664  69999999999999885 4799999999999999999997 67899999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEecccccccc--cChhhhcCCCCccEEEcCCCCCccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE--FLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |++..++...+   ++|++|++++|++..++. .+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|++..+
T Consensus       112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            99998876544   799999999999998865 58999999999999999964  667778887 999999999999887


Q ss_pred             cCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257         159 GTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  237 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  237 (419)
                      +..        ..++|++|++++|.+..++ ..+..+++|++|++++|.+.++.+..|..+++|++|+|++|++..++..
T Consensus       188 ~~~--------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          188 PKD--------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             CSS--------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             Ccc--------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            543        1268999999999999886 6788999999999999999999888999999999999999999988764


Q ss_pred             hccCCCCCceEeCcCCcccccCc-cCCC------CCCcCEEecCCCccc--ccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         238 SKTFLPALEELFVSHNSLTRLDK-DFHG------LPVLCKADLAHNNIK--AINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       238 ~~~~l~~L~~L~L~~N~i~~l~~-~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                       +..+++|+.|++++|+|+.++. .|..      ...|+.|++++|.+.  .+.+..       +..++.++.+++++|.
T Consensus       260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~-------~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT-------FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG-------GTTBCCSTTEEC----
T ss_pred             -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc-------ccccchhhhhhccccc
Confidence             7779999999999999999873 3433      467999999999988  444443       3347888999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-32  Score=263.89  Aligned_cols=274  Identities=24%  Similarity=0.329  Sum_probs=235.9

Q ss_pred             ccccceeecccccCccCccc-cccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          25 LSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      +.+|+.|++++|.++.+|.. |..+++|++|++++|.+..++ ..|..+++|++|++++|.+.++.+..|.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            68999999999999999875 789999999999999999986 5899999999999999999999999999999999999


Q ss_pred             ccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC-----------CCcccC
Q psy4257         103 LQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG  170 (419)
Q Consensus       103 L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~~~~~  170 (419)
                      +++|+++.+|.. |..+++|++|++++|.+.+..+..|..+++|+.|++++|++..++.....           ...+..
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            999999999865 68999999999999999998888899999999999999999876422100           001122


Q ss_pred             cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257         171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV  250 (419)
Q Consensus       171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  250 (419)
                      ..+|++|++++|.+..++..  ..++|+.|++++|.+++.  ..+..+++|++|+|++|.+.++.+..|..+++|+.|+|
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence            34566677777777666543  246899999999999876  47888999999999999999998888999999999999


Q ss_pred             cCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257         251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL  310 (419)
Q Consensus       251 ~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~  310 (419)
                      ++|+++.++..+..+++|+.|++++|+++.++....        .+++|+.|++++|++.
T Consensus       280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--------QFDRLENLYLDHNSIV  331 (390)
T ss_dssp             CSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--------HHTTCSEEECCSSCCC
T ss_pred             CCCcCcccCcccCCCCCCCEEECCCCcceecCcccc--------ccCcCCEEECCCCccc
Confidence            999999999888889999999999999998876543        3788999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.3e-32  Score=279.28  Aligned_cols=303  Identities=25%  Similarity=0.327  Sum_probs=236.9

Q ss_pred             CCCCcEEecccccccccc-cccccccc--cceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCE
Q psy4257           2 LTDLNWLFLNNNRLKSLE-GQLGTLSK--LQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQV   76 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~-~~~~~~~~--L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~   76 (419)
                      .++|+.|++++|.+..+. ..+..++.  |+.|+|++|.++.++ ..|..+++|++|++++|.+.++ +..|.++++|+.
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  300 (680)
T 1ziw_A          221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY  300 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred             hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence            378999999999998654 55666654  999999999999774 5789999999999999999986 568999999999


Q ss_pred             EecCCCCCc---------ccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecc-------------------
Q psy4257          77 FNMDFNQIT---------MVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLS-------------------  127 (419)
Q Consensus        77 L~l~~n~l~---------~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~-------------------  127 (419)
                      |++++|...         .+....|..+++|++|++++|.+..++ ..|..+++|++|+++                   
T Consensus       301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~  380 (680)
T 1ziw_A          301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH  380 (680)
T ss_dssp             EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred             EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence            999987543         344457889999999999999998764 446666666665554                   


Q ss_pred             ---------cccccccChhhhcCCCCccEEEcCCCCCccc-cCCC-------------------CCCCcccCcccccEEE
Q psy4257         128 ---------HNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-GTRN-------------------EGKNQVQGVTNIFELK  178 (419)
Q Consensus       128 ---------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-------------------~~~~~~~~~~~L~~L~  178 (419)
                               +|.+.+..+..|..+++|+.|++++|.+.+. +...                   .....+..+++|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence                     4556666677888999999999999998742 2110                   0111233344455555


Q ss_pred             cCCCCCc---CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch--------hccCCCCCce
Q psy4257         179 LQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET--------SKTFLPALEE  247 (419)
Q Consensus       179 l~~n~l~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~  247 (419)
                      +++|.+.   .+|..+..+++|+.|++++|.++++.+..|.++++|++|+|++|+++.+...        .|..+++|+.
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            5555443   3456677888899999999999998888889999999999999998876432        3677889999


Q ss_pred             EeCcCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         248 LFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       248 L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      |+|++|+++.+|. .|.++++|+.|+|++|+|+.++...+.       .+++|+.+++++|.+..
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-------~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-------NQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------TCTTCCEEECTTSCCCB
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC-------CCCCCCEEECCCCcCCc
Confidence            9999999999885 588999999999999999998876543       47899999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7e-33  Score=278.49  Aligned_cols=301  Identities=25%  Similarity=0.294  Sum_probs=197.1

Q ss_pred             CCcEEecccccccccc-cccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257           4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD   80 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~   80 (419)
                      ++++|++++|.++.++ ..|..+++|++|+|++|.++.++ ..|..+++|++|++++|.+..++ ..|.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            5778888888887664 45677888888888888887764 45777888888888888887764 567778888888888


Q ss_pred             CCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChhhhcCCCCc----cEEEcCCCC
Q psy4257          81 FNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL----RTVDLSYNK  154 (419)
Q Consensus        81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~  154 (419)
                      +|++..+....|+++.+|++|++++|.+..  +|..+..+++|++|++++|.+.+..+..+..+.+|    +.|++++|.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence            888877776667778888888888887775  46777777788888877777665544444333333    333333333


Q ss_pred             --------------------------------------------------------------------------------
Q psy4257         155 --------------------------------------------------------------------------------  154 (419)
Q Consensus       155 --------------------------------------------------------------------------------  154 (419)
                                                                                                      
T Consensus       189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence                                                                                            


Q ss_pred             -------------------------CccccCCCCC-----------------CC-------------------cccCccc
Q psy4257         155 -------------------------INKFGTRNEG-----------------KN-------------------QVQGVTN  173 (419)
Q Consensus       155 -------------------------l~~~~~~~~~-----------------~~-------------------~~~~~~~  173 (419)
                                               +..++.....                 ..                   ....+++
T Consensus       269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence                                     2222110000                 00                   0023455


Q ss_pred             ccEEEcCCCCCcCc---hhhhcCCCC-----------------------CcEEEcCCCCCCCcCc-ccCCCCCCCcEEEc
Q psy4257         174 IFELKLQHNEIENL---DGALMGIHG-----------------------LSRLDLSHNKLRTISP-DDFIGLDSLKMLDI  226 (419)
Q Consensus       174 L~~L~l~~n~l~~~---~~~~~~l~~-----------------------L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  226 (419)
                      |++|++++|.+..+   +..+..+++                       |++|++++|.+.++.+ ..|..+++|++|++
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            56666666655543   233444444                       4455555554444433 35666677777777


Q ss_pred             cCCcCcccCchhccCCCCCceEeCcCCccc--ccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEe
Q psy4257         227 SHNLLTTLEETSKTFLPALEELFVSHNSLT--RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYL  304 (419)
Q Consensus       227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l  304 (419)
                      ++|.+.++.+..+..+++|++|++++|.+.  .+|..+..+++|+.|++++|+++++.+..+       ..+++|+.|++
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l  501 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-------NSLSSLQVLNM  501 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-------TTCTTCCEEEC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh-------hcccCCCEEeC
Confidence            777777766666777778888888888776  367777788888888888888877755432       24778888888


Q ss_pred             cCCcccc
Q psy4257         305 EGNPVLC  311 (419)
Q Consensus       305 ~~Np~~c  311 (419)
                      ++|.+..
T Consensus       502 ~~n~l~~  508 (570)
T 2z63_A          502 ASNQLKS  508 (570)
T ss_dssp             CSSCCSC
T ss_pred             CCCcCCC
Confidence            8887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.7e-33  Score=280.26  Aligned_cols=279  Identities=17%  Similarity=0.220  Sum_probs=215.6

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~   81 (419)
                      .....+++++.++.+|..+.  ++|++|+|++|.++.+ |..|..+++|++|++++|.+..++ ..|.++++|++|++++
T Consensus         6 ~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            6 ASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             TTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            34457888999999987664  7999999999999977 567999999999999999999975 6899999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEeccccc-ccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |++.++.+..|+++++|++|++++|.++.+  +..+..+++|++|++++|. +....+..|..+++|++|++++|++...
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            999999999999999999999999999954  5789999999999999998 5666667899999999999999998865


Q ss_pred             cCCCCCCC-------------------cccCcccccEEEcCCCCCc----------------------------------
Q psy4257         159 GTRNEGKN-------------------QVQGVTNIFELKLQHNEIE----------------------------------  185 (419)
Q Consensus       159 ~~~~~~~~-------------------~~~~~~~L~~L~l~~n~l~----------------------------------  185 (419)
                      .+.....-                   .+..+++|+.|++++|.+.                                  
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            33211000                   0012334444444444333                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy4257         186 --------------------------------------------------------------------------------  185 (419)
Q Consensus       186 --------------------------------------------------------------------------------  185 (419)
                                                                                                      
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence                                                                                            


Q ss_pred             Cchhhh-cCCCCCcEEEcCCCCCCCcCc---ccCCCCCCCcEEEccCCcCcccCc--hhccCCCCCceEeCcCCcccccC
Q psy4257         186 NLDGAL-MGIHGLSRLDLSHNKLRTISP---DDFIGLDSLKMLDISHNLLTTLEE--TSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       186 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      .+|..+ ..+++|++|++++|.+.+..+   ..+..+++|++|+|++|++++++.  ..+..+++|++|++++|+++.+|
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  403 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP  403 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence            233222 346677777777777766432   336667788888888888877653  45677888888888888888888


Q ss_pred             ccCCCCCCcCEEecCCCcccccchh
Q psy4257         260 KDFHGLPVLCKADLAHNNIKAINIQ  284 (419)
Q Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~  284 (419)
                      ..+..+++|++|++++|+|+.++..
T Consensus       404 ~~~~~~~~L~~L~Ls~N~l~~l~~~  428 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTGIRVVKTC  428 (549)
T ss_dssp             SCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred             hhhcccccccEEECCCCCcccccch
Confidence            7777788888888888888766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=272.86  Aligned_cols=142  Identities=23%  Similarity=0.288  Sum_probs=122.4

Q ss_pred             cEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCC
Q psy4257           6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~   83 (419)
                      ++|++++|.++.+|..+.  ++|++|+|++|.++.++ ..|..+++|++|++++|.+.++ |..|.++++|++|++++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            589999999999997666  89999999999999886 5799999999999999999997 6789999999999999999


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChhhhcCCCCc--cEEEcCCCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL--RTVDLSYNKI  155 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l  155 (419)
                      +..++..   .+++|++|++++|+++.  +|..+..+++|++|++++|.+.+.   .+..+++|  +.|++++|.+
T Consensus        81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence            9988654   79999999999999996  468899999999999999998762   34444555  6666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-32  Score=274.26  Aligned_cols=292  Identities=21%  Similarity=0.229  Sum_probs=205.3

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~   81 (419)
                      ..+++++++|.++.+|..+.  ++|+.|+|++|.|+.++ ..|..+++|++|++++|.|.++ +..|.++++|++|++++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            44789999999999987664  79999999999999886 5799999999999999999998 57899999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCC--cc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI--NK  157 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~  157 (419)
                      |++..++..   .+++|++|++++|+++.++  ..+..+++|++|++++|.+.+.....+..+ +|+.|++++|++  ..
T Consensus       110 N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          110 NRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKG  185 (562)
T ss_dssp             SCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCS
T ss_pred             CcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccc
Confidence            999988765   7999999999999999874  689999999999999999876433333332 236666666655  11


Q ss_pred             ccCCC---------------------------------------------------------------------------
Q psy4257         158 FGTRN---------------------------------------------------------------------------  162 (419)
Q Consensus       158 ~~~~~---------------------------------------------------------------------------  162 (419)
                      ..+..                                                                           
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence            11000                                                                           


Q ss_pred             -------------------------CCCCcc-------------------------------------------------
Q psy4257         163 -------------------------EGKNQV-------------------------------------------------  168 (419)
Q Consensus       163 -------------------------~~~~~~-------------------------------------------------  168 (419)
                                               ..+..+                                                 
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~  345 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH  345 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence                                     000000                                                 


Q ss_pred             ----cCcccccEEEcCCCCCcC-chhhhcCCCCCcEEEcCCCCCCCcC--cccCCCCCCCcEEEccCCcCcc-cCchhcc
Q psy4257         169 ----QGVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTT-LEETSKT  240 (419)
Q Consensus       169 ----~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~  240 (419)
                          ..+++|++|++++|.+.. ++..+..+++|++|++++|+++++.  +..|..+++|++|++++|.+.+ ++...+.
T Consensus       346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence                344555666666665554 3445555666666666666665543  2345566666666666666655 5555555


Q ss_pred             CCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         241 FLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       241 ~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      .+++|++|++++|++++ ++..+.  ++|+.|++++|+|+.++..+.        .+++|+.+++++|.+..
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~--------~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT--------HLQALQELNVASNQLKS  487 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT--------SSCCCSEEECCSSCCCC
T ss_pred             CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc--------CCCCCCEEECCCCCCCC
Confidence            56666666666666643 222221  567777777777777665433        47888999999998763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=9e-32  Score=246.52  Aligned_cols=238  Identities=24%  Similarity=0.323  Sum_probs=177.1

Q ss_pred             ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEeccccc
Q psy4257          52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ  130 (419)
Q Consensus        52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~  130 (419)
                      +.++++++.+..+|..+  .++|+.|++++|.+.++.+..|.++++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            45566666666665322  35677777777777776666666677777777777766665 4556666667777777665


Q ss_pred             -ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257         131 -LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT  209 (419)
Q Consensus       131 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~  209 (419)
                       +....+..|..+++|++|++++|++..+.                            +..+..+++|++|++++|.+.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------------PGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------------TTTTTTCTTCCEEECCSSCCCC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------------HhHhhCCcCCCEEECCCCcccc
Confidence             65555566666666666666666655432                            2345667778888888888887


Q ss_pred             cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhh
Q psy4257         210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALK  288 (419)
Q Consensus       210 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (419)
                      +.+..|..+++|++|+|++|++++++...|..+++|+.|+|++|.+.++ +..|..+++|+.|++++|+++.++...+. 
T Consensus       144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-  222 (285)
T 1ozn_A          144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-  222 (285)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-
T ss_pred             cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-
Confidence            7777788888888888888888888877788888888888888888886 56788889999999999999988876443 


Q ss_pred             cccceecCCcceeEEecCCccccccchHHHHHHHHhhc
Q psy4257         289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETIN  326 (419)
Q Consensus       289 ~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~  326 (419)
                            .+++|+.+++++|||.|+|.+.|+..|++...
T Consensus       223 ------~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~  254 (285)
T 1ozn_A          223 ------PLRALQYLRLNDNPWVCDCRARPLWAWLQKFR  254 (285)
T ss_dssp             ------TCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred             ------cCcccCEEeccCCCccCCCCcHHHHHHHHhcc
Confidence                  47889999999999999999999999999854

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-31  Score=260.89  Aligned_cols=275  Identities=27%  Similarity=0.302  Sum_probs=197.9

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|++++|.++.++ .+..+++|++|+|++|.++.++  ++.+++|++|++++|.+.+++  +..+++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            578999999999998886 5788999999999999999885  788899999999999999886  78899999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR  161 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (419)
                      |++.+++   +..+++|++|++++|+++.++  +..+++|++|++++|...+..  .+..+++|+.|++++|++..++  
T Consensus       116 N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--  186 (457)
T 3bz5_A          116 NKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--  186 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred             CcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence            9998873   788899999999999998874  677788888888888543333  4666777888888887777643  


Q ss_pred             CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc--
Q psy4257         162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK--  239 (419)
Q Consensus       162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--  239 (419)
                            +..+++|+.|++++|.++.++  +..+++|++|++++|++++++   +..+++|+.|++++|++++++...+  
T Consensus       187 ------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          187 ------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             ------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             ------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence                  344556666666666666552  455566666666666666542   4555666666666666555543222  


Q ss_pred             ---------------------------cCCCCCceEeCcCCcccc-cCc--------cCCCCCCcCEEecCCCcccccch
Q psy4257         240 ---------------------------TFLPALEELFVSHNSLTR-LDK--------DFHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       240 ---------------------------~~l~~L~~L~L~~N~i~~-l~~--------~~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                                                 ..+++|+.|++++|...+ +|.        .+..+++|+.|++++|+|++++ 
T Consensus       256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-  334 (457)
T 3bz5_A          256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-  334 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-
T ss_pred             CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-
Confidence                                       234556666666664221 221        2556678888888888888764 


Q ss_pred             hhhhhcccceecCCcceeEEecCCcccc
Q psy4257         284 QLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                               +..+++|+.+++++|.+..
T Consensus       335 ---------l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          335 ---------VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             ---------CTTCTTCSEEECCSSCCCB
T ss_pred             ---------cccCCcCcEEECCCCCCCC
Confidence                     2237788888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=284.69  Aligned_cols=281  Identities=25%  Similarity=0.334  Sum_probs=198.6

Q ss_pred             CCCCcEEeccccccccc-ccccccccccceeeccccc-CccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEE
Q psy4257           2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ-LEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF   77 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~-l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L   77 (419)
                      .++|++|+|++|.|+.+ +..|..+++|+.|+|++|. +..+ |..|.++++|++|+|++|.|..+ |..|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            36789999999999876 4678889999999999984 4466 56788999999999999999886 6788899999999


Q ss_pred             ecCCCCCcccChh--hhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccChhhhcCC--CCccEEEcC
Q psy4257          78 NMDFNQITMVRRD--EFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLS  151 (419)
Q Consensus        78 ~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~  151 (419)
                      ++++|.+.+..+.  .|.++++|++|+|++|.+..++  ..|..+++|++|++++|.+.+..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            9999998874443  4888999999999999888763  468889999999999998887666665544  455555555


Q ss_pred             CCCCccccCCC------------------------------CC-------------------------------CCcccC
Q psy4257         152 YNKINKFGTRN------------------------------EG-------------------------------KNQVQG  170 (419)
Q Consensus       152 ~n~l~~~~~~~------------------------------~~-------------------------------~~~~~~  170 (419)
                      +|.+.......                              ..                               ...+..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            55443321110                              00                               000111


Q ss_pred             --cccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCce
Q psy4257         171 --VTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE  247 (419)
Q Consensus       171 --~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  247 (419)
                        ..+|+.|++++|.+..++ ..+..+++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+.+..|..+++|+.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              145666666666666543 44566667777777777777666666777777777777777776666666666777777


Q ss_pred             EeCcCCcccccC-ccCCCCCCcCEEecCCCcccccc
Q psy4257         248 LFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       248 L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                      |++++|++..++ ..|..+++|+.|+|++|.++.++
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            777777776665 34666777777777777766554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=100.00  E-value=3.6e-31  Score=242.68  Aligned_cols=222  Identities=25%  Similarity=0.309  Sum_probs=193.7

Q ss_pred             hhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccC
Q psy4257          91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG  170 (419)
Q Consensus        91 ~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  170 (419)
                      .+.++++++.++++++.++.+|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|.+..++.       ...
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~   75 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGT   75 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSC
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------CCC
Confidence            35677788888888888888876654  678888888888888877888888889999999988887653       256


Q ss_pred             cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257         171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV  250 (419)
Q Consensus       171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  250 (419)
                      +++|+.|++++|.+..+|..+..+++|++|++++|+++++.+..|.++++|++|+|++|++..++...|..+++|+.|+|
T Consensus        76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            78899999999999989888889999999999999999998899999999999999999999999988999999999999


Q ss_pred             cCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCc
Q psy4257         251 SHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT  329 (419)
Q Consensus       251 ~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~  329 (419)
                      ++|+|+.++. .|..+++|+.|+|++|+|+.++..++        ....++.+++.+|||.|+|.+.|+..|++.....+
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~--------~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~~  227 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--------GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV  227 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGGB
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc--------ccccCCeEEeCCCCccCcCccHHHHHHHHhCcccc
Confidence            9999999985 46889999999999999999987654        35689999999999999999999999999854433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-32  Score=255.62  Aligned_cols=249  Identities=17%  Similarity=0.177  Sum_probs=159.3

Q ss_pred             ccceeecccccccC---chhhhcCCCCCCEEecCC-CCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEE
Q psy4257          50 QLGSLYANNNRITS---LDGLLRGLTKLQVFNMDF-NQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYL  124 (419)
Q Consensus        50 ~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L  124 (419)
                      +++.|++++|.+.+   +|..|..+++|++|++++ |.+.+..+..|.++++|++|++++|.++ .+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            44445555554442   344445555555555552 4444444444555555555555555554 344445555555555


Q ss_pred             ecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcc-cccEEEcCCCCCc-CchhhhcCCCCCcEEEc
Q psy4257         125 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT-NIFELKLQHNEIE-NLDGALMGIHGLSRLDL  202 (419)
Q Consensus       125 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~L  202 (419)
                      ++++|.+.+..+..+..+++|++|++++|++.+..+     ..+..+. +|++|++++|.+. .+|..+..+. |++|++
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-----GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-----HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            555555554444455555555555555555542211     1233333 5555555555554 3455666665 999999


Q ss_pred             CCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc-ccCccCCCCCCcCEEecCCCccccc
Q psy4257         203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                      ++|.+.+..+..|..+++|++|+|++|.+.+..+. +..+++|++|+|++|+|. .+|..|..+++|+.|+|++|++++.
T Consensus       205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            99998888888889999999999999998876554 677889999999999998 4778888999999999999999854


Q ss_pred             chhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257         282 NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD  313 (419)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~  313 (419)
                      .+..        ..+++++.+++.+|++.|+.
T Consensus       284 ip~~--------~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          284 IPQG--------GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCS--------TTGGGSCGGGTCSSSEEEST
T ss_pred             CCCC--------ccccccChHHhcCCCCccCC
Confidence            3322        23778889999999999974

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-31  Score=270.04  Aligned_cols=275  Identities=24%  Similarity=0.334  Sum_probs=236.9

Q ss_pred             ccccceeecccccCccCccc-cccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          25 LSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      +.+++.|++++|.+..+|.. |..+++|+.|+|++|.|..++ ..|..+++|+.|+|++|.+.++++..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            67899999999999999865 788999999999999999986 5899999999999999999999999999999999999


Q ss_pred             ccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC-----------CCcccC
Q psy4257         103 LQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG  170 (419)
Q Consensus       103 L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~~~~~  170 (419)
                      |++|.|+.+|.. |..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+..++.....           ...+..
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            999999999765 68999999999999999999888999999999999999999876422110           001123


Q ss_pred             cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257         171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV  250 (419)
Q Consensus       171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  250 (419)
                      ..+|+.|++++|.+..++..+  ..+|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence            345666677777666665433  36799999999999875  67888999999999999999998889999999999999


Q ss_pred             cCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       251 ~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      ++|.+++++..+..+++|+.|+|++|.+..++..+.        .+++|+.|++++|++..
T Consensus       286 s~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--------~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--------QFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             TTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--------HHTTCSEEECCSSCCCC
T ss_pred             CCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc--------cCCCCCEEECCCCCCCC
Confidence            999999999888889999999999999999887543        37889999999998743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=3.9e-32  Score=252.18  Aligned_cols=248  Identities=17%  Similarity=0.204  Sum_probs=200.4

Q ss_pred             cccceeecccccCc---cCccccccccccceeeccc-cccc-CchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          26 SKLQLLVIEQNQLE---ALPSDIQLFSQLGSLYANN-NRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        26 ~~L~~L~L~~n~l~---~i~~~~~~~~~L~~L~l~~-n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      .+++.|+|++|.+.   .+|..+..+++|++|++++ |.+. .+|..|..+++|++|++++|++.+..+..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57888888888887   4677888888888888884 7776 46777888888888888888888777778888888888


Q ss_pred             EEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCC-CccEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257         101 ISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK  178 (419)
Q Consensus       101 L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  178 (419)
                      |++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+. +|+.|++++|++.+..+.     .+..+. |+.|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-----~~~~l~-L~~L~  203 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-----TFANLN-LAFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-----GGGGCC-CSEEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-----HHhCCc-ccEEE
Confidence            888888888 5677788888888888888888877777888887 888888888888754332     344555 88888


Q ss_pred             cCCCCCcC-chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         179 LQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       179 l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      +++|.+.. ++..+..+++|+.|++++|.+++..+. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|++++
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence            88888874 456778889999999999999877554 7888999999999999987777788889999999999999985


Q ss_pred             -cCccCCCCCCcCEEecCCCc-cccc
Q psy4257         258 -LDKDFHGLPVLCKADLAHNN-IKAI  281 (419)
Q Consensus       258 -l~~~~~~l~~L~~L~L~~N~-l~~~  281 (419)
                       +|. ...+++|+.+++++|. +.+.
T Consensus       283 ~ip~-~~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          283 EIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cCCC-CccccccChHHhcCCCCccCC
Confidence             554 4788999999999997 4443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.2e-30  Score=254.18  Aligned_cols=255  Identities=24%  Similarity=0.333  Sum_probs=191.3

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|++++|.++.++  +..+++|+.|++++|.++.++  ++.+++|++|++++|.+.+++  +..+++|+.|++++
T Consensus        63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred             cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence            678999999999998874  777899999999999998874  788899999999999998886  78889999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT  160 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (419)
                      |+++++.   ++++++|++|++++| .+..+  .+..+++|++|++++|.++++.   +..+++|+.|++++|++..+  
T Consensus       137 N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~--  206 (457)
T 3bz5_A          137 NTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL--  206 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC--
T ss_pred             Cccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee--
Confidence            9988873   677778888888877 44454  4566777777777777777742   66667777777777777654  


Q ss_pred             CCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCC------------------------
Q psy4257         161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------------------------  216 (419)
Q Consensus       161 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------  216 (419)
                            .+..+++|+.|++++|+++.+|  +..+++|++|++++|.++++.+..+.                        
T Consensus       207 ------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          207 ------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI  278 (457)
T ss_dssp             ------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             ------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence                  1455666777777777776665  55666677777777666665433332                        


Q ss_pred             -----CCCCCcEEEccCCcCcc--------cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccc
Q psy4257         217 -----GLDSLKMLDISHNLLTT--------LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       217 -----~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                           .+++|+.|++++|...+        +....+..+++|++|++++|++++++  +..+++|+.|++++|+|++++
T Consensus       279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred             cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence                 34566666666664322        11123566789999999999999984  899999999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.5e-31  Score=250.16  Aligned_cols=273  Identities=19%  Similarity=0.235  Sum_probs=237.5

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~   81 (419)
                      .....+++++.++.+|..+.  ++|+.|++++|.++.++. .|..+++|++|++++|.+..++ ..|.++++|++|++++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            44567889999999987664  599999999999998876 7999999999999999999974 6799999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccc-cccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |++.++++..|.++++|++|++++|+++.++.  .+..+++|++|++++| .+.+..+..|..+++|+.|++++|++...
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            99999999889999999999999999999976  7889999999999999 57887788999999999999999999877


Q ss_pred             cCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCC---CCCCCcEEEccCCcCccc
Q psy4257         159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFI---GLDSLKMLDISHNLLTTL  234 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~  234 (419)
                      .+.     .+..+++|++|++++|.+..++..+ ..+++|+.|++++|.++++.+..+.   ....++.++|+++.+.+.
T Consensus       190 ~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          190 EPK-----SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             CTT-----TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CHH-----HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            443     6778899999999999999888654 4589999999999999987655443   357789999999988763


Q ss_pred             ----CchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCCcccccch
Q psy4257         235 ----EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       235 ----~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                          .+..+..+++|+.|+|++|+++.+|.. |..+++|++|++++|.+..-.+
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                234567899999999999999999976 5899999999999999986543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.97  E-value=1.5e-30  Score=237.18  Aligned_cols=248  Identities=19%  Similarity=0.282  Sum_probs=162.6

Q ss_pred             eecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccc
Q psy4257          54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus        54 L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~  132 (419)
                      ++..+..+..+|..+.  ++|+.|++++|++.++.+..|.++++|++|++++|++..++. .+..+++|++|++++|.+.
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            3444444555554332  456666777776666666666666677777777776666543 5666666777777777766


Q ss_pred             ccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC-
Q psy4257         133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-  211 (419)
Q Consensus       133 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-  211 (419)
                      +..+..|..+++|++|++++|++..+...                            .+..+++|++|++++|.+.++. 
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~l~~L~~L~l~~n~l~~~~l  141 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENF----------------------------PIGHLKTLKELNVAHNLIQSFKL  141 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTC----------------------------CCTTCTTCCEEECCSSCCCCCCC
T ss_pred             ccChhhhcCCccccEEECCCCCccccCch----------------------------hcccCCCCCEEECcCCccceecC
Confidence            66666666667777777777666544321                            2344555666666666665542 


Q ss_pred             cccCCCCCCCcEEEccCCcCcccCchhccCCCCCc----eEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257         212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALE----ELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL  287 (419)
Q Consensus       212 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (419)
                      +..|..+++|++|+|++|++++++...+..+.+|+    .|++++|.+..++.......+|+.|++++|+++.++...+.
T Consensus       142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred             chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence            55566666666666666666666555555444454    67778888877775555556788888888888887765432


Q ss_pred             hcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCceeccccCCCCC
Q psy4257         288 KTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKIHGETICQPD  340 (419)
Q Consensus       288 ~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~~~~~~c~~~  340 (419)
                             .+++|+.+++++|||.|+|. +.|+..|++..  .....+...|..+
T Consensus       222 -------~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~--~~~~~~~~~C~~~  266 (276)
T 2z62_A          222 -------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKEQGSAKCSGS  266 (276)
T ss_dssp             -------TCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT--GGGBCSCCBBTTT
T ss_pred             -------ccccccEEEccCCcccccCCchHHHHHHHHhc--ccccCCCceeeCC
Confidence                   37889999999999999995 88999999874  3344555677654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.5e-30  Score=252.44  Aligned_cols=246  Identities=27%  Similarity=0.382  Sum_probs=221.6

Q ss_pred             ccceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN  105 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  105 (419)
                      ....++.++..++.+|..+.  .+|+.|+|++|.|..+ +..|.++++|+.|+|++|+|.++.+..|.++++|++|+|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35788999999999987664  6899999999999987 57799999999999999999999999999999999999999


Q ss_pred             CcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCC-CCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         106 NQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY-NKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       106 n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      |+|+.++. .|..+++|++|+|++|.+..+....|..+++|+.|++++ +.+..++..     .+..+++|+.|++++|.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-----~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-----AFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----TTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-----hccCCCCCCEEECCCCc
Confidence            99998865 588899999999999999998888999999999999998 556555433     57788999999999999


Q ss_pred             CcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccC
Q psy4257         184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDF  262 (419)
Q Consensus       184 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~  262 (419)
                      +..++ .+..+++|+.|+|++|.+.++.+..|.++++|+.|+|++|++..+.+..|..+++|+.|+|++|+|+.++ ..|
T Consensus       208 l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            99886 4778899999999999999999999999999999999999999999999999999999999999999988 457


Q ss_pred             CCCCCcCEEecCCCcccc
Q psy4257         263 HGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       263 ~~l~~L~~L~L~~N~l~~  280 (419)
                      ..+++|+.|+|++|.+..
T Consensus       287 ~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCTTCCEEECCSSCEEC
T ss_pred             ccccCCCEEEccCCCcCC
Confidence            889999999999998863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=5.3e-30  Score=249.26  Aligned_cols=244  Identities=25%  Similarity=0.390  Sum_probs=186.0

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~   81 (419)
                      ....++.++..++.+|..+.  ++++.|+|++|+|+.++ ..|..+++|+.|+|++|.|..++ ..|.++++|+.|+|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            35678899999999987665  68999999999999885 57999999999999999999985 7899999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccc-ccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFG  159 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (419)
                      |+++.+.+..|.++++|++|+|++|.|..++. .|..+++|++|++++ +.+..+....|.++++|+.|++++|++..++
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            99999999999999999999999999998864 789999999999999 4566666667888889999999888887553


Q ss_pred             CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257         160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  239 (419)
                             .+                       ..+++|+.|+|++|.++++.+..|.++++|+.|+|++|++..+....|
T Consensus       202 -------~~-----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          202 -------NL-----------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             -------CC-----------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred             -------cc-----------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence                   12                       334455555555555555555555555555555555555555555555


Q ss_pred             cCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCccc
Q psy4257         240 TFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       240 ~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~  279 (419)
                      ..+++|+.|+|++|+|+.++ ..|..+++|+.|+|++|.+.
T Consensus       252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            55555555555555555554 23455556666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.97  E-value=1.6e-29  Score=253.73  Aligned_cols=258  Identities=27%  Similarity=0.251  Sum_probs=224.9

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      +++.|++++|.++.+|..+.  ++|+.|+|++|.|+.+|.   .+++|++|+|++|.|+.+|.   .+++|++|++++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            58899999999999987665  799999999999999987   57899999999999999986   77999999999999


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE  163 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  163 (419)
                      +.+++.    .+.+|+.|++++|+|+.+|..   +++|++|++++|.+.++..    .+.+|+.|++++|.+..++    
T Consensus       113 l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----  177 (622)
T 3g06_A          113 LTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP----  177 (622)
T ss_dssp             CCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred             CCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----
Confidence            999865    578999999999999999864   4899999999999987532    3578999999999998765    


Q ss_pred             CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257         164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP  243 (419)
Q Consensus       164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  243 (419)
                           ..+++|+.|++++|.+..++..   +++|+.|++++|.++.+..    .+++|+.|+|++|.|++++    ..++
T Consensus       178 -----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~  241 (622)
T 3g06_A          178 -----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPS  241 (622)
T ss_dssp             -----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred             -----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCC
Confidence                 3468899999999999988753   5789999999999998742    2478999999999999987    4478


Q ss_pred             CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      +|+.|+|++|+|+.+|.   .+++|+.|+|++|+|+.++..+        ..+++|+.|++++|++..
T Consensus       242 ~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l--------~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          242 ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL--------IHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG--------GGSCTTCEEECCSCCCCH
T ss_pred             cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH--------hhccccCEEEecCCCCCC
Confidence            99999999999999986   6789999999999999887643        348899999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=5.1e-30  Score=237.29  Aligned_cols=246  Identities=25%  Similarity=0.364  Sum_probs=204.2

Q ss_pred             cEEecccccccccccccccccccceeecccccCccCccc-cccccccceeecccccccCc---hhhhcCCCCCCEEecCC
Q psy4257           6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~   81 (419)
                      +.++++++.++.+|..+.  ++|+.|+|++|.++.+|.. |..+++|++|++++|.+..+   +..+.++++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            578999999999987554  6999999999999999865 79999999999999999865   56777899999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG  159 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (419)
                      |.+..++. .|.++++|++|++++|++..++.  .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus        88 n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            99998754 58899999999999999998864  7899999999999999999888888999999999999999876410


Q ss_pred             CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257         160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  239 (419)
                                                 ++..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+.+++...+
T Consensus       167 ---------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          167 ---------------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             ---------------------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             ---------------------------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                                       12345566777777777777777777777778888888888888887777777


Q ss_pred             cCCCCCceEeCcCCcccccC-ccCCCCC-CcCEEecCCCccccc
Q psy4257         240 TFLPALEELFVSHNSLTRLD-KDFHGLP-VLCKADLAHNNIKAI  281 (419)
Q Consensus       240 ~~l~~L~~L~L~~N~i~~l~-~~~~~l~-~L~~L~L~~N~l~~~  281 (419)
                      ..+++|+.|+|++|++.+++ ..+..++ +|+.|+|++|.+..-
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            77888888888888887754 4566664 788888888888753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=4.4e-29  Score=243.01  Aligned_cols=161  Identities=26%  Similarity=0.312  Sum_probs=84.3

Q ss_pred             cccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257          26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN  105 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  105 (419)
                      ++|+.|++++|+++.+| .|+.+++|++|++++|.+.++|..   ..+|++|++++|++.+++  .|+++++|++|++++
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECCC
Confidence            35555555555555554 355555555555555555555432   235555555555555543  355555666666666


Q ss_pred             CcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                      |+++.+|...   ++|++|++++|.+..+.  .+..+++|+.|++++|++..++.         .+.+|+.|++++|.+.
T Consensus       205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          205 NSLKKLPDLP---LSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             SCCSSCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCS
T ss_pred             CcCCcCCCCc---CcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCccc
Confidence            6555554322   35556666666555432  35566666666666666654432         1244555555555555


Q ss_pred             CchhhhcCCCCCcEEEcCCCCCCC
Q psy4257         186 NLDGALMGIHGLSRLDLSHNKLRT  209 (419)
Q Consensus       186 ~~~~~~~~l~~L~~L~Ls~n~l~~  209 (419)
                      .+|..   +++|++|++++|.+++
T Consensus       271 ~l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          271 DLPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCCCC---CTTCCEEECCSSCCSE
T ss_pred             ccCcc---cCcCCEEECcCCccCc
Confidence            54432   2445555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.97  E-value=1.9e-29  Score=253.02  Aligned_cols=245  Identities=27%  Similarity=0.274  Sum_probs=216.1

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n   82 (419)
                      ++|++|++++|.|+.++.   .+++|+.|+|++|+|+.+|.   .+++|++|++++|.|..++.   .+.+|+.|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            579999999999998876   47899999999999999986   67899999999999999986   6789999999999


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN  162 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (419)
                      +++.++.    .+++|++|++++|+++.+|.   .+.+|+.|++++|.+.++.    ..+++|+.|++++|.+..++.  
T Consensus       132 ~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~--  198 (622)
T 3g06_A          132 QLTSLPV----LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT--  198 (622)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CCCcCCC----CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC--
Confidence            9999864    35899999999999999875   3468999999999999864    457899999999999987653  


Q ss_pred             CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257         163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL  242 (419)
Q Consensus       163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  242 (419)
                             .+++|+.|++++|.+..++..   +++|+.|++++|.|+++.    ..+++|+.|+|++|.|+.++.    .+
T Consensus       199 -------~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~  260 (622)
T 3g06_A          199 -------LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LP  260 (622)
T ss_dssp             -------CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CC
T ss_pred             -------ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----cc
Confidence                   247899999999999988853   578999999999999874    456899999999999999876    47


Q ss_pred             CCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257         243 PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL  287 (419)
Q Consensus       243 ~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (419)
                      ++|+.|+|++|+|+.+|..+..+++|+.|+|++|.+++..+..+.
T Consensus       261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            899999999999999999999999999999999999987666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=8.9e-30  Score=247.87  Aligned_cols=249  Identities=21%  Similarity=0.246  Sum_probs=139.3

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCc-cCcccccccccc-------------ceeecccccccCchhh
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQL-------------GSLYANNNRITSLDGL   67 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L-------------~~L~l~~n~i~~l~~~   67 (419)
                      .+.|++|++++|.++.+|..++.+++|++|++++|.+. .+|..++.+.+|             ++|++++|.++++|..
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            35789999999999999988999999999999999887 678877777664             8888888888887752


Q ss_pred             hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257          68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT  147 (419)
Q Consensus        68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  147 (419)
                         .++|+.|++++|.+.+++.    .+.+|++|++++|+++.++...   ++|++|++++|.+.+++  .|..+++|++
T Consensus        90 ---~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp--~~~~l~~L~~  157 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP--ELQNSSFLKI  157 (454)
T ss_dssp             ---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred             ---cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc--ccCCCCCCCE
Confidence               3678888888888887642    2367777777777777664321   56777777777777633  4677777777


Q ss_pred             EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEcc
Q psy4257         148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS  227 (419)
Q Consensus       148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  227 (419)
                      |++++|++..++..         ..+|++|++++|.+..+| .+..+++|++|++++|.++++. ..   ..+|++|+++
T Consensus       158 L~l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~-~~---~~~L~~L~l~  223 (454)
T 1jl5_A          158 IDVDNNSLKKLPDL---------PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DL---PLSLESIVAG  223 (454)
T ss_dssp             EECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC-CC---CTTCCEEECC
T ss_pred             EECCCCcCcccCCC---------cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCC-CC---cCcccEEECc
Confidence            77777776654321         135666666666666555 3555555666666666555542 11   1345555555


Q ss_pred             CCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257         228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       228 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                      +|.+..++.  +..+++|++|++++|+++++|..   +++|+.|++++|+++++
T Consensus       224 ~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          224 NNILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             SSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC
T ss_pred             CCcCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc
Confidence            555554442  44455555555555555554431   23444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=4.2e-29  Score=226.87  Aligned_cols=215  Identities=23%  Similarity=0.316  Sum_probs=159.6

Q ss_pred             CCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257          98 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL  177 (419)
Q Consensus        98 L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  177 (419)
                      .+.++++++.++.+|..+.  ++|+.|++++|.+.++.+..|..+++|++|++++|++..++..     .+..+++|++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-----~~~~l~~L~~L   90 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-----IFKELKNLETL   90 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-----TTSSCTTCCEE
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-----hhcCCCCCCEE
Confidence            4455555555555544332  3455555555555555544555555555555555555544322     34455566666


Q ss_pred             EcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257         178 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT  256 (419)
Q Consensus       178 ~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  256 (419)
                      ++++|.+..++ ..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+..++...|..+++|+.|+|++|+++
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            66666666555 34577888999999999999988888899999999999999999998888888999999999999999


Q ss_pred             ccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhc
Q psy4257         257 RLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETIN  326 (419)
Q Consensus       257 ~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~  326 (419)
                      .++. .|..+++|++|+|++|+|+.++...+.       .+++|+.+++++|||.|+|. +.|+..|++...
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~  235 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD-------SLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKA  235 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHH
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhc-------cccCCCEEEecCCCeeCCCccHHHHHHHHHhhc
Confidence            9874 588899999999999999988876443       47889999999999999997 789999988754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=5.1e-29  Score=253.28  Aligned_cols=151  Identities=23%  Similarity=0.290  Sum_probs=135.6

Q ss_pred             EEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCC
Q psy4257           7 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI   84 (419)
Q Consensus         7 ~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l   84 (419)
                      ..+.++-+++.+|..+.  +++++|+|++|+|+.++. .|.++++|++|+|++|.|+.++ .+|.++++|++|+|++|+|
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            45677777888887664  489999999999999964 6999999999999999999986 5799999999999999999


Q ss_pred             cccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccccc-ChhhhcCCCCccEEEcCCCCCcccc
Q psy4257          85 TMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFG  159 (419)
Q Consensus        85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~  159 (419)
                      +++++..|.++.+|++|+|++|+++.++. .|.++++|++|++++|.+.+. .+..+..+++|++|++++|++..+.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            99999999999999999999999999964 689999999999999999875 4677888999999999999998654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.1e-29  Score=237.18  Aligned_cols=227  Identities=18%  Similarity=0.211  Sum_probs=152.1

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      ..+++.|+|++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+ +..|.++++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence            466777777777777777767777777777777777777776677777777777777777755 4457777777777777


Q ss_pred             CCc-Ccccccccc---------CCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccc
Q psy4257         105 NNQ-ITSMNSSLS---------GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI  174 (419)
Q Consensus       105 ~n~-l~~i~~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L  174 (419)
                      +|+ +..+|..+.         .+++|++|++++|.+.. .+..+..+++|+.|++++|++..+                
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l----------------  221 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL----------------  221 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC----------------
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC----------------
Confidence            754 335555443         37788888888888874 455677778888888877776543                


Q ss_pred             cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257         175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS  254 (419)
Q Consensus       175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  254 (419)
                                   +..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.
T Consensus       222 -------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          222 -------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             -------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             -------------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence                         2334555666666666666666556666666666777776666655555556666677777777655


Q ss_pred             ccc-cCccCCCCCCcCEEecCCCcccccc
Q psy4257         255 LTR-LDKDFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       255 i~~-l~~~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                      +.+ +|..+..+++|+.+++..+.+..+.
T Consensus       289 ~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          289 NLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             TCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             chhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            433 6666667777777777766655544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.97  E-value=1.5e-30  Score=241.37  Aligned_cols=252  Identities=20%  Similarity=0.168  Sum_probs=199.0

Q ss_pred             cccccccceeecccccCccCccccccccccceeecccccccC--chhhhc-------CCCCCCEEecCCCCCcccChhhh
Q psy4257          22 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLR-------GLTKLQVFNMDFNQITMVRRDEF   92 (419)
Q Consensus        22 ~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~--l~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~   92 (419)
                      +....+|+.|++++|.+ .+|..+...  |+.|++++|.+..  ++..+.       ++++|++|++++|++.+..+..+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34477899999999999 888766554  9999999999865  454444       78999999999999998767665


Q ss_pred             --cCCCCCCEEEccCCcCccccccccCC-----ccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCC
Q psy4257          93 --QNLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK  165 (419)
Q Consensus        93 --~~~~~L~~L~L~~n~l~~i~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  165 (419)
                        ..+++|++|++++|+++.+|..+..+     ++|++|++++|.+.+..+..|..+++|++|++++|++.+.... ...
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-HHH
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-HHH
Confidence              88999999999999999887777666     8999999999999998888999999999999999986542100 000


Q ss_pred             CcccCcccccEEEcCCCCCcCch----hhhcCCCCCcEEEcCCCCCCCcCc-ccCCCCCCCcEEEccCCcCcccCchhcc
Q psy4257         166 NQVQGVTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEETSKT  240 (419)
Q Consensus       166 ~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~  240 (419)
                      ..+..+++|++|++++|.+..++    ..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++|+|+.++...+ 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            12367788999999999888554    233567889999999998888653 456667888888888888887765443 


Q ss_pred             CCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257         241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       241 ~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                        ++|++|+|++|+|+++|. +..+++|+.|++++|.|++.
T Consensus       274 --~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             --SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             --CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence              688888888888888865 78888888888888887753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=8.8e-30  Score=233.27  Aligned_cols=221  Identities=25%  Similarity=0.356  Sum_probs=146.9

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ  107 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  107 (419)
                      +.++++++.++.+|..+  .++|++|++++|.+..++ ..|..+++|+.|++++|.+.++.+..|.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            56777777777777544  357788888888887765 467778888888888888888877788888888888888886


Q ss_pred             -Cccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         108 -ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       108 -l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                       +..+ +..+..+++|++|++++|.+.+..+..|..+++|++|++++|++..++..     .+..+++|+.|++++|.++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-----TFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-----HhccCCCccEEECCCCccc
Confidence             7776 56677888888888888888887777788888888888888877655432     2344444555555555444


Q ss_pred             Cchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257         186 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT  256 (419)
Q Consensus       186 ~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  256 (419)
                      .++. .+..+++|++|++++|.+.++.+..|..+++|+.|++++|.+.+++...+..+++|+.|+|++|.+.
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4432 2444555555555555555555555555555555555555555555444555555555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.97  E-value=5.6e-30  Score=238.13  Aligned_cols=228  Identities=18%  Similarity=0.220  Sum_probs=133.5

Q ss_pred             hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257          68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT  147 (419)
Q Consensus        68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  147 (419)
                      +..+++|+.|++++|++.++.+..|.++++|++|+|++|.++.++. +..+++|++|++++|.+.+..     ..++|+.
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~  103 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence            3344455555555555555555555555555555555555554432 455555555555555554432     1245555


Q ss_pred             EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCC-CCCCCcEEE
Q psy4257         148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLD  225 (419)
Q Consensus       148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~  225 (419)
                      |++++|++..++.        ..+++|++|++++|.+..++ ..+..+++|++|++++|.+.++.+..+. .+++|++|+
T Consensus       104 L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          104 LHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             EECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             EECCCCccCCcCc--------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            5555555554432        12345666666666666553 2455566777777777777666555543 566777777


Q ss_pred             ccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257         226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE  305 (419)
Q Consensus       226 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~  305 (419)
                      |++|.++.++..  ..+++|++|+|++|+|+.++..+..+++|+.|++++|+|+.++..        +..+++++.++++
T Consensus       176 L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~--------~~~l~~L~~L~l~  245 (317)
T 3o53_A          176 LQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA--------LRFSQNLEHFDLR  245 (317)
T ss_dssp             CTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT--------CCCCTTCCEEECT
T ss_pred             CCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH--------hhcCCCCCEEEcc
Confidence            777777666432  236677777777777777766666777777777777777766543        2235677777777


Q ss_pred             CCccccccchHHHH
Q psy4257         306 GNPVLCDDSMRAVI  319 (419)
Q Consensus       306 ~Np~~c~~~~~~~~  319 (419)
                      +|++.|++...|+.
T Consensus       246 ~N~~~~~~~~~~~~  259 (317)
T 3o53_A          246 GNGFHCGTLRDFFS  259 (317)
T ss_dssp             TCCCBHHHHHHHHH
T ss_pred             CCCccCcCHHHHHh
Confidence            77777766544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.2e-29  Score=236.00  Aligned_cols=255  Identities=18%  Similarity=0.183  Sum_probs=187.6

Q ss_pred             ccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +++.++++++.+..++. .+..+++|++|++++|.+..++ ..|..+++|+.|++++|++.++.+  |..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666654433 3455667777777777777764 567777888888888887776654  7777788888888


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|+++.++.    .++|++|++++|.+.+..+.   .+++|+.|++++|++..+...     .+..+++|++|++++|.+
T Consensus        89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~-----~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-----DEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB-----CTGGGSSEEEEECTTSCC
T ss_pred             CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch-----hhhccCCCCEEECCCCCC
Confidence            887776642    36788888888887776433   356788888888887766433     456677888888888888


Q ss_pred             cCch-hhh-cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccC
Q psy4257         185 ENLD-GAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF  262 (419)
Q Consensus       185 ~~~~-~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~  262 (419)
                      ..++ ..+ ..+++|++|++++|.++++..  ...+++|++|+|++|++++++.. +..+++|+.|+|++|+|+.+|..+
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence            7654 334 468899999999999988732  33588999999999999998776 777899999999999999999889


Q ss_pred             CCCCCcCEEecCCCccc-ccchhhhhhcccceecCCcceeEEec
Q psy4257         263 HGLPVLCKADLAHNNIK-AINIQLALKTQCQIFGLNSTLRIYLE  305 (419)
Q Consensus       263 ~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~~~~~~l~~l~l~  305 (419)
                      ..+++|+.|++++|.+. ......+       ..++.++.+++.
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~-------~~~~~L~~l~l~  270 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFF-------SKNQRVQTVAKQ  270 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHH-------HTCHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHH-------hccccceEEECC
Confidence            99999999999999998 3332222       235556666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.6e-29  Score=232.85  Aligned_cols=232  Identities=19%  Similarity=0.202  Sum_probs=158.7

Q ss_pred             cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257          49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH  128 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~  128 (419)
                      .+++.|++++|.+..+|..+..+++|++|++++|.+..+ +..|.++++|++|+|++|.+..+|..+..+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            345555555555555544444455555555555555422 2344445555555555555554444444555555555555


Q ss_pred             ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257         129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR  208 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~  208 (419)
                      |.+.+..+..+..      ..              ....+..+++|++|++++|.++.+|..+..+++|++|++++|.+.
T Consensus       160 n~~~~~~p~~~~~------~~--------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          160 CPELTELPEPLAS------TD--------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             ETTCCCCCSCSEE------EC---------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCccccChhHhh------cc--------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence            4443333322211      00              011245688899999999999989988999999999999999999


Q ss_pred             CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccc-cchhhh
Q psy4257         209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKA-INIQLA  286 (419)
Q Consensus       209 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~-~~~~~~  286 (419)
                      ++ +..|..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|++.+ +|..  
T Consensus       220 ~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--  296 (328)
T 4fcg_A          220 AL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--  296 (328)
T ss_dssp             CC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--
T ss_pred             cC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--
Confidence            87 4568999999999999999988888889999999999999986655 78889999999999999988664 5543  


Q ss_pred             hhcccceecCCcceeEEecCCccc
Q psy4257         287 LKTQCQIFGLNSTLRIYLEGNPVL  310 (419)
Q Consensus       287 ~~~~~~~~~~~~l~~l~l~~Np~~  310 (419)
                            +..+++++.+++..|.+.
T Consensus       297 ------l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          297 ------IAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ------GGGSCTTCEEECCGGGSC
T ss_pred             ------HhhccCceEEeCCHHHHH
Confidence                  334888999998877653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=8.9e-30  Score=236.24  Aligned_cols=245  Identities=20%  Similarity=0.217  Sum_probs=202.0

Q ss_pred             CCCcEEecccccccccccccccccccceeecccccCcc--Cccccc-------cccccceeecccccccC-chhhh--cC
Q psy4257           3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA--LPSDIQ-------LFSQLGSLYANNNRITS-LDGLL--RG   70 (419)
Q Consensus         3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~--i~~~~~-------~~~~L~~L~l~~n~i~~-l~~~~--~~   70 (419)
                      ++|++|++++|.+ .+|..+...  |+.|+|++|.+..  ++..+.       .+++|++|++++|.+.+ +|..+  ..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4688899999999 777666554  9999999999964  555554       68999999999999985 66554  88


Q ss_pred             CCCCCEEecCCCCCcccChhhhcCC-----CCCCEEEccCCcCcccc-ccccCCccCcEEeccccccccc--Chhhh--c
Q psy4257          71 LTKLQVFNMDFNQITMVRRDEFQNL-----HNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF--LLDDI--R  140 (419)
Q Consensus        71 l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~  140 (419)
                      +++|++|++++|++.++ +..|..+     ++|++|++++|++..++ ..+..+++|++|++++|.+.+.  .+..+  .
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            99999999999999998 6677766     89999999999999886 7899999999999999997764  22333  7


Q ss_pred             CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCC
Q psy4257         141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL  218 (419)
Q Consensus       141 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  218 (419)
                      .+++|++|++++|++..++..  ....+..+++|++|++++|.+...+  ..+..+++|++|++++|.++.+ |..+.  
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--  273 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGV--CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--  273 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHH--HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred             cCCCCCEEECCCCcCcchHHH--HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence            899999999999999854321  1123456789999999999998765  4456689999999999999977 44554  


Q ss_pred             CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257         219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL  258 (419)
Q Consensus       219 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l  258 (419)
                      ++|++|+|++|+|++++.  +..+++|++|+|++|.|++.
T Consensus       274 ~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            899999999999999954  78899999999999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4e-28  Score=238.43  Aligned_cols=218  Identities=19%  Similarity=0.254  Sum_probs=106.4

Q ss_pred             ccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257          50 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH  128 (419)
Q Consensus        50 ~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~  128 (419)
                      +|+.|+|++|.+..++ ..|..+++|+.|+|++|.+.++.+  |..+++|++|+|++|.|+.++..    ++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence            4555555555555542 345555555555555555554433  45555555555555555444321    4455555555


Q ss_pred             ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257         129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR  208 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~  208 (419)
                      |.+.+..+.   .+++|+.|++++|.+..+.                            +..+..+++|+.|+|++|.++
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLR----------------------------DLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGG----------------------------GBCGGGGSSEEEEECTTSCCC
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCC----------------------------chhhcCCCCCCEEECCCCCCC
Confidence            555443322   2344455555555444432                            223444555555555555555


Q ss_pred             CcCcccCC-CCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257         209 TISPDDFI-GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL  287 (419)
Q Consensus       209 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (419)
                      ++.+..|. .+++|+.|+|++|.+++++..  ..+++|+.|+|++|.|++++..+..+++|+.|+|++|.|++++..   
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---  232 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA---  232 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT---
T ss_pred             CcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh---
Confidence            54444443 445555555555555544322  224555555555555555554455555555555555555554432   


Q ss_pred             hcccceecCCcceeEEecCCccccccc
Q psy4257         288 KTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       288 ~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                           +..++++..+++++|++.|++.
T Consensus       233 -----l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          233 -----LRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             -----CCCCTTCCEEECTTCCBCHHHH
T ss_pred             -----hccCCCCCEEEcCCCCCcCcch
Confidence                 1124455555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.7e-28  Score=239.67  Aligned_cols=243  Identities=19%  Similarity=0.216  Sum_probs=191.0

Q ss_pred             ccccceeecccccCccCc-cccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEc
Q psy4257          25 LSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL  103 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  103 (419)
                      +++|+.|+|++|.++.++ ..|..+++|++|+|++|.+.+++. +..+++|+.|++++|.|.++++     .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            459999999999999875 579999999999999999998765 8999999999999999988753     389999999


Q ss_pred             cCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       104 ~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      ++|.|..++.  ..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+                       
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------  161 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----------------------  161 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-----------------------
T ss_pred             cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-----------------------
Confidence            9999998854  346899999999999999888888889999999999998876532                       


Q ss_pred             CcCchhhhc-CCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccC
Q psy4257         184 IENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF  262 (419)
Q Consensus       184 l~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~  262 (419)
                           ..+. .+++|+.|+|++|.++++.+  +..+++|+.|+|++|.++++++. +..+++|+.|+|++|.|+++|..+
T Consensus       162 -----~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          162 -----AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             -----GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred             -----HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhh
Confidence                 2332 56777777777777776622  33477788888888888877665 666778888888888888888777


Q ss_pred             CCCCCcCEEecCCCccc--ccchhhhhhcccceecCCcceeEEec-------CCccccccc
Q psy4257         263 HGLPVLCKADLAHNNIK--AINIQLALKTQCQIFGLNSTLRIYLE-------GNPVLCDDS  314 (419)
Q Consensus       263 ~~l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~~~~~~l~~l~l~-------~Np~~c~~~  314 (419)
                      ..+++|+.|++++|.+.  .++..        +..++.+..+++.       +|++.|.|.
T Consensus       234 ~~l~~L~~L~l~~N~l~c~~~~~~--------~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          234 RFSQNLEHFDLRGNGFHCGTLRDF--------FSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CCCTTCCEEECTTCCBCHHHHHHH--------HTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             ccCCCCCEEEcCCCCCcCcchHHH--------HHhCCCCcEEeccccccccCCCcccccCC
Confidence            78888888888888877  22221        1124455555554       777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=2.1e-29  Score=246.52  Aligned_cols=14  Identities=21%  Similarity=0.107  Sum_probs=7.5

Q ss_pred             CCcceeEEecCCcc
Q psy4257         296 LNSTLRIYLEGNPV  309 (419)
Q Consensus       296 ~~~l~~l~l~~Np~  309 (419)
                      +++|+++++++|++
T Consensus       397 ~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          397 NHSLRELDLSNNCL  410 (461)
T ss_dssp             CCCCCEEECCSSSC
T ss_pred             CCCccEEECCCCCC
Confidence            45555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=2.2e-29  Score=246.49  Aligned_cols=318  Identities=18%  Similarity=0.155  Sum_probs=203.8

Q ss_pred             CCCCcEEeccccccc-----ccccccccccccceeecccccCccC-ccc-ccccc----ccceeecccccccC-----ch
Q psy4257           2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEAL-PSD-IQLFS----QLGSLYANNNRITS-----LD   65 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~i-~~~-~~~~~----~L~~L~l~~n~i~~-----l~   65 (419)
                      +++|++|++++|.++     .++..+..+++|+.|+|++|.+... +.. +..+.    +|++|++++|.+..     ++
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            467888888888877     3345566678888888888887742 222 23344    68888888888873     46


Q ss_pred             hhhcCCCCCCEEecCCCCCcccChhhhc-----CCCCCCEEEccCCcCcc-----ccccccCCccCcEEecccccccccC
Q psy4257          66 GLLRGLTKLQVFNMDFNQITMVRRDEFQ-----NLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFL  135 (419)
Q Consensus        66 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~~~  135 (419)
                      ..+..+++|+.|++++|.+.......+.     ...+|++|++++|+++.     ++..+..+++|++|++++|.+.+..
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            6778888888888888887765444332     24578888888888774     3455666778888888888876644


Q ss_pred             hhhhc-----CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch------hhhcCCCCCcEEEcCC
Q psy4257         136 LDDIR-----GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD------GALMGIHGLSRLDLSH  204 (419)
Q Consensus       136 ~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~l~~L~~L~Ls~  204 (419)
                      ...+.     ..++|+.|++++|.+...... .....+..+++|++|++++|.+....      ..+..+++|++|++++
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence            43332     255788888888877653110 01113445677788888888776431      2223467788888888


Q ss_pred             CCCCCcC----cccCCCCCCCcEEEccCCcCcccCchhcc-----CCCCCceEeCcCCccccc-----CccCCCCCCcCE
Q psy4257         205 NKLRTIS----PDDFIGLDSLKMLDISHNLLTTLEETSKT-----FLPALEELFVSHNSLTRL-----DKDFHGLPVLCK  270 (419)
Q Consensus       205 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~l-----~~~~~~l~~L~~  270 (419)
                      |.++...    +..+..+++|++|+|++|.+.+.....+.     ..++|++|++++|.++..     +..+..+++|+.
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            8776631    44455577788888888877654332222     235778888888877653     344566677888


Q ss_pred             EecCCCcccccchhhhhhccccee-cCCcceeEEecCCccccccchHHHHHHHHh
Q psy4257         271 ADLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCDDSMRAVIDAMET  324 (419)
Q Consensus       271 L~L~~N~l~~~~~~~~~~~~~~~~-~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~  324 (419)
                      |++++|.++......+...   +. ..+.|++|++++|.+. +.....+..++..
T Consensus       346 L~Ls~n~i~~~~~~~l~~~---l~~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~  396 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQG---LGQPGSVLRVLWLADCDVS-DSSCSSLAATLLA  396 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHH---HTSTTCCCCEEECTTSCCC-HHHHHHHHHHHHH
T ss_pred             EEccCCccccccHHHHHHH---HcCCCCceEEEECCCCCCC-hhhHHHHHHHHHh
Confidence            8888887776544433211   11 1456777888777653 2233445555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.5e-26  Score=210.66  Aligned_cols=203  Identities=25%  Similarity=0.346  Sum_probs=114.8

Q ss_pred             ccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecc
Q psy4257          50 QLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLS  127 (419)
Q Consensus        50 ~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~  127 (419)
                      +|++|++++|.+..++. .|.++++|++|++++|++.++.+..|.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444444432 3444444555555555444444444444445555555555444442 334444455555555


Q ss_pred             cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCc----EEEc
Q psy4257         128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLS----RLDL  202 (419)
Q Consensus       128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~----~L~L  202 (419)
                      +|.+.+.....+..+++|++|++++|++..+.    ....+..+++|++|++++|.+..++ ..+..+.+|+    .|++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceec----CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            55544444334444555555555555544321    0113444455555555555555443 3344444444    7888


Q ss_pred             CCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      ++|.+.++.+..+.. .+|+.|+|++|++++++...|..+++|+.|+|++|.+..
T Consensus       185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            888888886666554 478888888888888888778888888899998888774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=4.5e-26  Score=208.75  Aligned_cols=204  Identities=25%  Similarity=0.297  Sum_probs=139.8

Q ss_pred             cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEE
Q psy4257          45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL  124 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L  124 (419)
                      ++.++++++++++++.++.+|..+.  ++++.|++++|.+.++.+..|.++++|++|+|++|.|+.++.. ..+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            3444555555555555555553332  4566666666666666666666666666666666666665432 455566666


Q ss_pred             ecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCC
Q psy4257         125 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  204 (419)
Q Consensus       125 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~  204 (419)
                      ++++|.+..+ +..+..+++|+.|++++|++..++                            +..|..+++|++|+|++
T Consensus        83 ~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~----------------------------~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLP----------------------------LGALRGLGELQELYLKG  133 (290)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCC----------------------------SSTTTTCTTCCEEECTT
T ss_pred             ECCCCcCCcC-chhhccCCCCCEEECCCCcCcccC----------------------------HHHHcCCCCCCEEECCC
Confidence            6666655542 234444555555555555544332                            13466677888888888


Q ss_pred             CCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccc
Q psy4257         205 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       205 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~  280 (419)
                      |+++++.+..|..+++|+.|+|++|+++.++...|..+++|+.|+|++|+|+.+|..+..+.+|+.|+|++|.+..
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            8888887777888888888888888888888888888889999999999999888888888899999999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=9.5e-26  Score=202.42  Aligned_cols=194  Identities=23%  Similarity=0.292  Sum_probs=151.6

Q ss_pred             CCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccE
Q psy4257          97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE  176 (419)
Q Consensus        97 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~  176 (419)
                      ..++++++++.++.+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+..+.                 
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------   75 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-----------------   75 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-----------------
Confidence            45677777777777776554  57777788777777777667777777777777777766543                 


Q ss_pred             EEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257         177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT  256 (419)
Q Consensus       177 L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  256 (419)
                                 +..+..+++|++|+|++|.++++.+..|..+++|++|+|++|+|+.++...|..+++|++|+|++|+|+
T Consensus        76 -----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           76 -----------AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             -----------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence                       234566777888888888888777777888888888888888888888777778888888888888888


Q ss_pred             ccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc-cchHHHHHHHHhhcC
Q psy4257         257 RLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD-DSMRAVIDAMETINN  327 (419)
Q Consensus       257 ~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~-~~~~~~~~~l~~~~~  327 (419)
                      .++. .|..+++|++|+|++|+|+.++...+       ..+++|+.|++++|+|.|+ |.+.|+..|++....
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~  210 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-------DRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSN  210 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-------TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGG
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHH-------hCCCCCCEEEeeCCceeCCccccHHHHHHHHhccc
Confidence            8875 57888888888888888888876543       2478899999999999999 999999999987443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.5e-25  Score=203.43  Aligned_cols=199  Identities=21%  Similarity=0.336  Sum_probs=107.0

Q ss_pred             cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccccc-ccCCccCcEEecccc
Q psy4257          51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHN  129 (419)
Q Consensus        51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n  129 (419)
                      ++.++++++.++.+|..+.  .+|+.|++++|++.++.+..|.++++|++|++++|.++.++.. |..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            3344444444444443221  3455555555555555555555555555555555555555432 344555555555555


Q ss_pred             cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257         130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT  209 (419)
Q Consensus       130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~  209 (419)
                      .+.+..+..|..+++|++|++++|++..++.                            ..+..+++|++|++++|.+.+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------------RVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCH----------------------------HHhCcCcCCCEEECCCCcCCc
Confidence            5555544455555555555555555544321                            223445555555555555555


Q ss_pred             cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCccc
Q psy4257         210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       210 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~  279 (419)
                      +.+..|..+++|++|+|++|.+..++...|..+++|+.|+|++|+++.++. .|..+++|+.|+|++|.+.
T Consensus       148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            555555555666666666666666555555556666666666666666553 3555666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.93  E-value=3.3e-26  Score=211.63  Aligned_cols=216  Identities=20%  Similarity=0.334  Sum_probs=143.9

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +.++..+.+..+.+..+ ..+..+++|++|++++|.+..++ .+..+++|+.|++++|++.++.+  +..+++|++|+++
T Consensus        18 l~~~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~   93 (308)
T 1h6u_A           18 LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (308)
T ss_dssp             HHHHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHHHHHHhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc
Confidence            34455556666666654 23456778888888888888876 46778888888888888887755  7788888888888


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|.++.++ .+..+++|++|++++|.+.+..  .+..+++|+.|++++|++..++.       +..+++|+.|++++|.+
T Consensus        94 ~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A           94 GNPLKNVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             SCCCSCCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCC
T ss_pred             CCcCCCch-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcC
Confidence            88888774 5777788888888888877643  37777777777777777765432       44555666666666666


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      ..++. +..+++|+.|++++|.++++.+  +..+++|++|+|++|++.++.+  +..+++|+.|+|++|.++..|
T Consensus       164 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          164 SDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             CCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            65554 5555666666666666655532  4555666666666666655542  455556666666666655544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5e-26  Score=206.73  Aligned_cols=217  Identities=22%  Similarity=0.294  Sum_probs=146.1

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +..+..+++.++.+..+ ..+..+.+|+.|++++|.+..++. +..+++|+.|++++|.+.++  ..+..+++|++|+++
T Consensus        18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            45666777777777655 245677888888888888887764 67788888888888888876  367888888888888


Q ss_pred             CCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         105 NNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       105 ~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      +|.++.++. .+..+++|++|++++|.+.+..+..|..+++|++|++++|++..++..     .+..+++|+.|++++|.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----VFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-----HhccCccCCEEECCCCC
Confidence            888887754 467888888888888888887777788888888888888888765432     33444455555555555


Q ss_pred             CcCchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         184 IENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       184 l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      ++.++. .+..+++|++|++++|.++++.+..|..+++|+.|++++|.+..       .+++|+.|+++.|.+.+
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred             cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence            544432 23445555555555555555555555555555555555554432       24455555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.93  E-value=1.4e-25  Score=207.53  Aligned_cols=212  Identities=25%  Similarity=0.393  Sum_probs=119.4

Q ss_pred             eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccccccc
Q psy4257          53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus        53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~  132 (419)
                      .+.+..+.+..+.. +..+++|+.|++++|.+..+.  .+..+++|++|++++|.+..++. +..+++|++|++++|.+.
T Consensus        23 ~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           23 KIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HHHTTCSSTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred             HHHhCCCCcCceec-HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC
Confidence            33444444444211 233455666666666665543  35556666666666666665544 555666666666666655


Q ss_pred             ccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc
Q psy4257         133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP  212 (419)
Q Consensus       133 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  212 (419)
                      +.  ..+..+++|+.|++++|++..++       .+..+++|++|++++|.+..++. +..+++|++|++++|.++++.+
T Consensus        99 ~~--~~~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A           99 NV--SAIAGLQSIKTLDLTSTQITDVT-------PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             CC--GGGTTCTTCCEEECTTSCCCCCG-------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             Cc--hhhcCCCCCCEEECCCCCCCCch-------hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh
Confidence            53  24555666666666666655432       24555566666666666665544 5555666666666666655533


Q ss_pred             ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccch
Q psy4257         213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       213 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                        +..+++|+.|++++|.+++++.  +..+++|++|+|++|++.+++ .+..+++|+.|++++|.++..+.
T Consensus       169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence              5556666666666666655543  445566666666666666555 25556666666666666655444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=1.2e-25  Score=200.14  Aligned_cols=203  Identities=22%  Similarity=0.356  Sum_probs=114.3

Q ss_pred             CccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCC-CcccChhhhcCCCCCCEEEccC-CcCcccc-c
Q psy4257          38 LEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQN-NQITSMN-S  113 (419)
Q Consensus        38 l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~-n~l~~i~-~  113 (419)
                      ++.+|. +.  .+|++|++++|.++.++. .|.++++|+.|++++|+ +..+.+..|.++++|++|++++ |+++.++ .
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            555554 32  356666666666666543 56666666666666665 6666666666666666666666 6666664 3


Q ss_pred             cccCCccCcEEecccccccccChhhhcCCCCcc---EEEcCCC-CCccccCCCCCCCcccCccccc-EEEcCCCCCcCch
Q psy4257         114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR---TVDLSYN-KINKFGTRNEGKNQVQGVTNIF-ELKLQHNEIENLD  188 (419)
Q Consensus       114 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~  188 (419)
                      .|..+++|++|++++|.+.+++ . |..+++|+   .|++++| ++..++..     .+..+++|+ .|++++|.+..++
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-----~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVN-----AFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTT-----TTTTTBSSEEEEECCSCCCCEEC
T ss_pred             HhCCCCCCCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcc-----cccchhcceeEEEcCCCCCcccC
Confidence            4566666666666666666633 2 55666666   7777776 66555432     233444444 4444444444444


Q ss_pred             hhhcCCCCCcEEEcCCCC-CCCcCcccCCCC-CCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         189 GALMGIHGLSRLDLSHNK-LRTISPDDFIGL-DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       189 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      .......+|+.|++++|+ ++.+.+..|.++ ++|+.|++++|+++.++..   .+++|+.|+++++
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            322222455556666553 555555555555 5555555555555555443   2445555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=1.8e-25  Score=199.15  Aligned_cols=199  Identities=19%  Similarity=0.279  Sum_probs=129.5

Q ss_pred             eecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc-Cccccc-cccCCccCcEEeccc-cc
Q psy4257          54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSMNS-SLSGLTKLAYLYLSH-NQ  130 (419)
Q Consensus        54 L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~i~~-~l~~l~~L~~L~l~~-n~  130 (419)
                      +++..+.++.+|. +.  .+|+.|++++|+++++++..|.++++|++|++++|. ++.++. .|..+++|++|++++ |.
T Consensus        16 ~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~   92 (239)
T 2xwt_C           16 FRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN   92 (239)
T ss_dssp             TEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred             ceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence            3333334777876 33  489999999999999998889999999999999996 888864 688899999999998 89


Q ss_pred             ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCC-CCCC
Q psy4257         131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN-KLRT  209 (419)
Q Consensus       131 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n-~l~~  209 (419)
                      +.++.+..|.++++|+.|++++|++..++.       +..+.+|+                    .|++|++++| .+++
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-------~~~l~~L~--------------------~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLKMFPD-------LTKVYSTD--------------------IFFILEITDNPYMTS  145 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCCSCCC-------CTTCCBCC--------------------SEEEEEEESCTTCCE
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCccccc-------cccccccc--------------------cccEEECCCCcchhh
Confidence            988887888888899999999888876532       23333333                    1114444444 4444


Q ss_pred             cCcccCCCCCCCc-EEEccCCcCcccCchhccCCCCCceEeCcCCc-ccccC-ccCCCC-CCcCEEecCCCcccccch
Q psy4257         210 ISPDDFIGLDSLK-MLDISHNLLTTLEETSKTFLPALEELFVSHNS-LTRLD-KDFHGL-PVLCKADLAHNNIKAINI  283 (419)
Q Consensus       210 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~l~-~~~~~l-~~L~~L~L~~N~l~~~~~  283 (419)
                      +.+..|.++++|+ +|++++|+++.++...|.. ++|+.|+|++|+ ++.++ ..|..+ ++|+.|++++|+|+.++.
T Consensus       146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             cCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            4444444455555 5555555555444444443 455555555552 55443 234444 555555555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.93  E-value=4.4e-26  Score=215.84  Aligned_cols=269  Identities=15%  Similarity=0.146  Sum_probs=145.8

Q ss_pred             eecccccCccC-ccccccccccceeecccccccCch-----hhhcCCC-CCCEEecCCCCCcccChhhhcCC-----CCC
Q psy4257          31 LVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-----GLLRGLT-KLQVFNMDFNQITMVRRDEFQNL-----HNL   98 (419)
Q Consensus        31 L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L   98 (419)
                      ++++.|.++.. |..+....+|++|++++|.+..++     ..+..++ +|+.|++++|++.+..+..|..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666666643 333444444677777766666543     4555666 66666666666666665555543     666


Q ss_pred             CEEEccCCcCcccc-c----cccCC-ccCcEEecccccccccChhhh----cC-CCCccEEEcCCCCCccccCCCCCCCc
Q psy4257          99 DSISLQNNQITSMN-S----SLSGL-TKLAYLYLSHNQLTEFLLDDI----RG-LKRLRTVDLSYNKINKFGTRNEGKNQ  167 (419)
Q Consensus        99 ~~L~L~~n~l~~i~-~----~l~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~~~  167 (419)
                      ++|+|++|.++... .    .+..+ ++|++|++++|.+.+.....+    .. ..+|++|++++|.+......      
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------  156 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD------  156 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH------
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH------
Confidence            66666666666432 1    23333 566666666666655544333    22 23566666666655432110      


Q ss_pred             ccCcccccEEEcCCCCCcCchhhhcCCC-CCcEEEcCCCCCCCcCcccC----CCC-CCCcEEEccCCcCcccCch----
Q psy4257         168 VQGVTNIFELKLQHNEIENLDGALMGIH-GLSRLDLSHNKLRTISPDDF----IGL-DSLKMLDISHNLLTTLEET----  237 (419)
Q Consensus       168 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~----  237 (419)
                                        .++..+..++ +|++|+|++|.+++..+..+    ..+ ++|++|+|++|.|.+....    
T Consensus       157 ------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          157 ------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             ------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence                              2233334443 66666666666655544322    223 3666666666666652211    


Q ss_pred             hccC-CCCCceEeCcCCcccccC-----ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         238 SKTF-LPALEELFVSHNSLTRLD-----KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       238 ~~~~-l~~L~~L~L~~N~i~~l~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      .+.. .++|++|+|++|.|...+     ..+..+++|+.|+|++|.+..+...........+..++.++.+++++|++..
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            1222 346666666666666543     2345666677777777766655554333322334456666777777777655


Q ss_pred             ccchHHHHHHHHh
Q psy4257         312 DDSMRAVIDAMET  324 (419)
Q Consensus       312 ~~~~~~~~~~l~~  324 (419)
                      .. ...+..+++.
T Consensus       299 ~~-~~~~~~~l~~  310 (362)
T 3goz_A          299 SH-SIPISNLIRE  310 (362)
T ss_dssp             GG-CHHHHHHHHH
T ss_pred             cc-hHHHHHHHHH
Confidence            42 2344445444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.92  E-value=6.2e-25  Score=206.91  Aligned_cols=236  Identities=21%  Similarity=0.293  Sum_probs=125.5

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcc-cChhhhcCCCCCCE-EEccC
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDS-ISLQN  105 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~-L~L~~  105 (419)
                      +.++.+++++++||..+  ..++++|+|++|+|+.|+ .+|.++++|++|+|++|++.+ ++..+|.++++++. +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            44566666666666544  245666666666666665 346666666666666666533 44555666666554 34445


Q ss_pred             CcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCC-CCCccccCCCCCCCcccCc-ccccEEEcCCC
Q psy4257         106 NQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY-NKINKFGTRNEGKNQVQGV-TNIFELKLQHN  182 (419)
Q Consensus       106 n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n  182 (419)
                      |++..++ ..|..+++|++|++++|.+.......+....++..|++.+ +++..++..     .+..+ ..++.|++++|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-----~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-----SFVGLSFESVILWLNKN  164 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-----SSTTSBSSCEEEECCSS
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc-----chhhcchhhhhhccccc
Confidence            6666653 4556666666666666666655554554555555666643 445444322     22222 23455555555


Q ss_pred             CCcCchhhhcCCCCCcEEEcC-CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc
Q psy4257         183 EIENLDGALMGIHGLSRLDLS-HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD  261 (419)
Q Consensus       183 ~l~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~  261 (419)
                      +|+.++.......+|++|+++ +|.++.+.+++|.++++|++|||++|+|+.++...|..+.+|+.+++  +.++.+| .
T Consensus       165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP-~  241 (350)
T 4ay9_X          165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP-T  241 (350)
T ss_dssp             CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCC-C
T ss_pred             cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCC-C
Confidence            555555444444556666664 34555555555666666666666666666655544333222222221  2344444 2


Q ss_pred             CCCCCCcCEEecC
Q psy4257         262 FHGLPVLCKADLA  274 (419)
Q Consensus       262 ~~~l~~L~~L~L~  274 (419)
                      +..+++|+.+++.
T Consensus       242 l~~l~~L~~l~l~  254 (350)
T 4ay9_X          242 LEKLVALMEASLT  254 (350)
T ss_dssp             TTTCCSCCEEECS
T ss_pred             chhCcChhhCcCC
Confidence            4444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=3.4e-25  Score=201.27  Aligned_cols=218  Identities=23%  Similarity=0.292  Sum_probs=165.5

Q ss_pred             ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257          48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS  127 (419)
Q Consensus        48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~  127 (419)
                      +.++..+++.++.+..+.. +..+++|+.|++++|.+..+.  .+..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus        18 ~~~l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEEC-HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             HHHHHHHHhcCcccccccc-cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            4456677787777776532 456788999999999988764  5888999999999999998874 78888999999999


Q ss_pred             cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hhcCCCCCcEEEcCCCC
Q psy4257         128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNK  206 (419)
Q Consensus       128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~n~  206 (419)
                      +|.+.+..+..|..+++|++|++++|++..++..     .+..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG-----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHH-----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            9999988877788899999999999988866543     45667777777777777776653 34667777777777777


Q ss_pred             CCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccc
Q psy4257         207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       207 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~  280 (419)
                      ++++.+..|..+++|++|++++|++.++++..+..+++|+.|++++|.+..      .+++|+.+++..|.+.+
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGG
T ss_pred             cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCC
Confidence            777766667777777777777777777777667777777777777776542      34566667777766654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.92  E-value=9.7e-25  Score=206.43  Aligned_cols=189  Identities=27%  Similarity=0.383  Sum_probs=137.3

Q ss_pred             CEEEccCCcCccccccccCCccCcEEecccccccccChhhhc-CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257          99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR-GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL  177 (419)
Q Consensus        99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  177 (419)
                      +.+++++++++.+|..+.  ..++.|+|++|.++++.+..|. .+++|+.|+|++|+|..++.                 
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-----------------   81 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-----------------   81 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-----------------
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-----------------
Confidence            466666777766665443  3466677777776666555555 66666666666666654432                 


Q ss_pred             EcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       178 ~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                                 ..|..+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|..+.+..|..+++|+.|+|++|+|+.
T Consensus        82 -----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           82 -----------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             -----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             -----------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence                       345667778888888888877777778888888888888888888877778888888888888888888


Q ss_pred             cCcc-C---CCCCCcCEEecCCCcccccchhhhhhcccceecCCc--ceeEEecCCccccccchHHH-HHHHHh
Q psy4257         258 LDKD-F---HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNS--TLRIYLEGNPVLCDDSMRAV-IDAMET  324 (419)
Q Consensus       258 l~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~--l~~l~l~~Np~~c~~~~~~~-~~~l~~  324 (419)
                      ++.. |   ..+++|+.|+|++|+|+.++...+..       ++.  ++.|++.+|||.|+|.+.|+ ..|+..
T Consensus       151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~  217 (361)
T 2xot_A          151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK-------LPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR  217 (361)
T ss_dssp             CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH-------SCHHHHTTEECCSSCEECCHHHHHHHHHHHHT
T ss_pred             eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh-------ccHhhcceEEecCCCccCCcCcHHHHHHHHHh
Confidence            8754 3   56889999999999999888765432       454  47799999999999999986 567754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=201.77  Aligned_cols=227  Identities=20%  Similarity=0.151  Sum_probs=175.8

Q ss_pred             cccceeecccccccC--chh--hhcCCCCCCEEecCCCCCcccChhhh--cCCCCCCEEEccCCcCccc-c----ccccC
Q psy4257          49 SQLGSLYANNNRITS--LDG--LLRGLTKLQVFNMDFNQITMVRRDEF--QNLHNLDSISLQNNQITSM-N----SSLSG  117 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~--l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~i-~----~~l~~  117 (419)
                      ..++.|.+.++.+..  +..  .+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+... +    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            346777777777653  111  12234679999999999998888777  8899999999999998852 1    34457


Q ss_pred             CccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhh----hcC
Q psy4257         118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGA----LMG  193 (419)
Q Consensus       118 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~  193 (419)
                      +++|++|++++|.+.+..+..|..+++|++|++++|++...... .....+..+++|++|++++|.++.++..    +..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL-MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH-HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh-hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            88999999999999988888899999999999999987542100 0011345678899999999999877652    467


Q ss_pred             CCCCcEEEcCCCCCCCcCcccCCCC---CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCE
Q psy4257         194 IHGLSRLDLSHNKLRTISPDDFIGL---DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK  270 (419)
Q Consensus       194 l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~  270 (419)
                      +++|++|+|++|.+.++.|..+..+   ++|++|+|++|+|+.++...   .++|+.|+|++|+|+++|. +..+++|+.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ-PDELPEVDN  298 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch-hhhCCCccE
Confidence            7899999999999988877666665   68999999999998876544   3688999999999888864 677888888


Q ss_pred             EecCCCcccc
Q psy4257         271 ADLAHNNIKA  280 (419)
Q Consensus       271 L~L~~N~l~~  280 (419)
                      |+|++|+|+.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            8888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.92  E-value=6.8e-25  Score=206.67  Aligned_cols=243  Identities=18%  Similarity=0.216  Sum_probs=197.7

Q ss_pred             ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-ccc-ccccCCccCcE-Eeccc
Q psy4257          52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMN-SSLSGLTKLAY-LYLSH  128 (419)
Q Consensus        52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~-~~l~~l~~L~~-L~l~~  128 (419)
                      +++++++++++.||..+  .++++.|+|++|+|+.+++++|.++++|++|+|++|++. .++ ..|.+++++.+ +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            67889999999999655  368999999999999999999999999999999999985 465 46788888775 66677


Q ss_pred             ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-CCCcCchh-hhcCCC-CCcEEEcCCC
Q psy4257         129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLDG-ALMGIH-GLSRLDLSHN  205 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~l~-~L~~L~Ls~n  205 (419)
                      |.+..+.+..|..+++|++|++++|++..++..     .+....++..+++.+ +.+..++. .|..+. .++.|++++|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-----HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-----TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             CcccccCchhhhhccccccccccccccccCCch-----hhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            999999899999999999999999999877643     344556677888855 67887763 455554 6899999999


Q ss_pred             CCCCcCcccCCCCCCCcEEEcc-CCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC-Ccccccch
Q psy4257         206 KLRTISPDDFIGLDSLKMLDIS-HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH-NNIKAINI  283 (419)
Q Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~-N~l~~~~~  283 (419)
                      +|+.+.+..|. ..+|+.|+++ +|.++.++...|..+++|++|+|++|+|+.+|..  .+.+|+.|.+.+ +.++.++.
T Consensus       165 ~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          165 GIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred             cccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence            99999777765 4689999997 5789999999999999999999999999999853  345666666544 45777763


Q ss_pred             hhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         284 QLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                               +..+++|+.+++. +++.|.|.
T Consensus       242 ---------l~~l~~L~~l~l~-~~~~c~~~  262 (350)
T 4ay9_X          242 ---------LEKLVALMEASLT-YPSHCCAF  262 (350)
T ss_dssp             ---------TTTCCSCCEEECS-CHHHHHHH
T ss_pred             ---------chhCcChhhCcCC-CCccccch
Confidence                     2347889999884 78888653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=8.1e-26  Score=216.00  Aligned_cols=114  Identities=19%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             CcccccEEEcCCCCCcC------chhhhcCCCCCcEEEcCCCCCC----CcCcccCCCCCCCcEEEccCCcCcccC----
Q psy4257         170 GVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLR----TISPDDFIGLDSLKMLDISHNLLTTLE----  235 (419)
Q Consensus       170 ~~~~L~~L~l~~n~l~~------~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----  235 (419)
                      .+++|+.|++++|.+..      ++..+..+++|++|+|++|.++    ...+..+..+++|++|+|++|.+.+..    
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            34455555555555541      1225566777888888887774    223556677778888888888877652    


Q ss_pred             chhc--cCCCCCceEeCcCCcccc-----cCccC-CCCCCcCEEecCCCcccccch
Q psy4257         236 ETSK--TFLPALEELFVSHNSLTR-----LDKDF-HGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       236 ~~~~--~~l~~L~~L~L~~N~i~~-----l~~~~-~~l~~L~~L~L~~N~l~~~~~  283 (419)
                      +..+  ..+++|+.|+|++|.|..     ++..+ ..+++|++|++++|.++....
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            2233  337788888888888887     66655 557888899999998887663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=3.7e-25  Score=211.43  Aligned_cols=263  Identities=17%  Similarity=0.172  Sum_probs=165.3

Q ss_pred             ecccccCccCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCc---ccChhh-------hcCCC
Q psy4257          32 VIEQNQLEALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQIT---MVRRDE-------FQNLH   96 (419)
Q Consensus        32 ~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~---~~~~~~-------~~~~~   96 (419)
                      .+....+..++..+..+++|++|+|++|.|..     +...+..+++|+.|+|++|.+.   +..+..       |..++
T Consensus        15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence            33333444455555556666666666665554     2233455666666666664332   222222       24555


Q ss_pred             CCCEEEccCCcCcc-----ccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCc
Q psy4257          97 NLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV  171 (419)
Q Consensus        97 ~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  171 (419)
                      +|++|+|++|.+..     ++..+..+++|++|+|++|.+....+..+...                         +..+
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-------------------------l~~l  149 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-------------------------LQEL  149 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-------------------------HHHH
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-------------------------HHHH
Confidence            55555555555553     34444555555555555555543222222111                         1111


Q ss_pred             ---------ccccEEEcCCCCCc--Cch---hhhcCCCCCcEEEcCCCCCCC-----cCcccCCCCCCCcEEEccCCcCc
Q psy4257         172 ---------TNIFELKLQHNEIE--NLD---GALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDSLKMLDISHNLLT  232 (419)
Q Consensus       172 ---------~~L~~L~l~~n~l~--~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~  232 (419)
                               ++|++|++++|.+.  .++   ..+..+++|++|+|++|.++.     +.+..+..+++|++|+|++|.++
T Consensus       150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence                     44555555555554  233   456788999999999999973     33447788999999999999995


Q ss_pred             ----ccCchhccCCCCCceEeCcCCccccc-----CccC--CCCCCcCEEecCCCcccc-----cchhhhhhcccceecC
Q psy4257         233 ----TLEETSKTFLPALEELFVSHNSLTRL-----DKDF--HGLPVLCKADLAHNNIKA-----INIQLALKTQCQIFGL  296 (419)
Q Consensus       233 ----~~~~~~~~~l~~L~~L~L~~N~i~~l-----~~~~--~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~~~~~  296 (419)
                          ...+..+..+++|+.|+|++|.|...     +..+  ..+++|+.|+|++|.|+.     ++..+.       ..+
T Consensus       230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-------~~l  302 (386)
T 2ca6_A          230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-------EKM  302 (386)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-------HHC
T ss_pred             cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-------hcC
Confidence                22334677899999999999999874     4555  448999999999999998     444332       236


Q ss_pred             CcceeEEecCCccccccc-hHHHHHHHHhhc
Q psy4257         297 NSTLRIYLEGNPVLCDDS-MRAVIDAMETIN  326 (419)
Q Consensus       297 ~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~  326 (419)
                      ++|+.|++++|++.+... +.++...+....
T Consensus       303 ~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~  333 (386)
T 2ca6_A          303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRG  333 (386)
T ss_dssp             TTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred             CCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence            899999999999987765 566666666643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.91  E-value=7e-24  Score=186.12  Aligned_cols=164  Identities=27%  Similarity=0.363  Sum_probs=140.2

Q ss_pred             cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEE
Q psy4257         146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML  224 (419)
Q Consensus       146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  224 (419)
                      +.++++++.+..++..        ...+|+.|++++|.+..++. .|..+++|++|+|++|.++++.+..|.++++|++|
T Consensus        14 ~~v~c~~~~l~~iP~~--------l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN--------LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSCCSS--------CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCcCCCc--------cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            4667777777665432        12567778888888777764 67888999999999999999989999999999999


Q ss_pred             EccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257         225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY  303 (419)
Q Consensus       225 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~  303 (419)
                      +|++|.|+.++...|..+++|+.|+|++|+|+.++ ..|..+++|+.|+|++|+|+.++...+.       .+++++.++
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~  158 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS-------PLRAIQTMH  158 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh-------CCCCCCEEE
Confidence            99999999999888899999999999999999985 6788999999999999999998876433       478899999


Q ss_pred             ecCCccccccchHHHHHHHHh
Q psy4257         304 LEGNPVLCDDSMRAVIDAMET  324 (419)
Q Consensus       304 l~~Np~~c~~~~~~~~~~l~~  324 (419)
                      +++|||.|+|.+.|+..|++.
T Consensus       159 L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          159 LAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             CCSSCEECSGGGHHHHHHHHH
T ss_pred             eCCCCcCCCCccHHHHHHHHh
Confidence            999999999999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=4.4e-25  Score=208.98  Aligned_cols=258  Identities=16%  Similarity=0.131  Sum_probs=166.7

Q ss_pred             EEeccccccccc-ccccccccccceeecccccCccCc-----ccccccc-ccceeecccccccCc-hhhhcC----C-CC
Q psy4257           7 WLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALP-----SDIQLFS-QLGSLYANNNRITSL-DGLLRG----L-TK   73 (419)
Q Consensus         7 ~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i~-----~~~~~~~-~L~~L~l~~n~i~~l-~~~~~~----l-~~   73 (419)
                      .+.++.|.++.. +..+....+|+.|+|++|.++.++     ..+..++ +|++|+|++|.|... +..+..    . ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            467889998854 444444566999999999999775     4577888 899999999999975 333444    3 89


Q ss_pred             CCEEecCCCCCcccChhhhc----CC-CCCCEEEccCCcCccccc-----cccC-CccCcEEecccccccccChh----h
Q psy4257          74 LQVFNMDFNQITMVRRDEFQ----NL-HNLDSISLQNNQITSMNS-----SLSG-LTKLAYLYLSHNQLTEFLLD----D  138 (419)
Q Consensus        74 L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~i~~-----~l~~-l~~L~~L~l~~n~l~~~~~~----~  138 (419)
                      |+.|++++|++.+..+..+.    .+ ++|++|++++|.++..+.     .+.. ..+|++|++++|.+.+....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999988877544    44 899999999999987642     2444 36999999999999865443    3


Q ss_pred             hcCCC-CccEEEcCCCCCccccCCCCCCCcccCc-ccccEEEcCCCCCcC-----chhhhcC-CCCCcEEEcCCCCCCCc
Q psy4257         139 IRGLK-RLRTVDLSYNKINKFGTRNEGKNQVQGV-TNIFELKLQHNEIEN-----LDGALMG-IHGLSRLDLSHNKLRTI  210 (419)
Q Consensus       139 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~-----~~~~~~~-l~~L~~L~Ls~n~l~~~  210 (419)
                      +..++ +|++|++++|++....... ....+... ++|++|+|++|.+..     ++..+.. .++|++|+|++|.++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAE-LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHH-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHH-HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            45555 8999999999887653210 00112222 355566666665554     3333333 23555555555555544


Q ss_pred             Cc----ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257         211 SP----DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI  281 (419)
Q Consensus       211 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~  281 (419)
                      .+    ..+..+++|++|+|++|.+..+....                +..+...+..+++|+.||+++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~----------------~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ----------------CKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH----------------HHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHH----------------HHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33    22333444555555555433332211                112223455666677777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.91  E-value=4.5e-23  Score=182.18  Aligned_cols=169  Identities=28%  Similarity=0.301  Sum_probs=145.1

Q ss_pred             ccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257         145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM  223 (419)
Q Consensus       145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  223 (419)
                      .+.++.+++++..++..        ..++|+.|+|++|.+..+ +..+..+++|++|+|++|.|..+.+..|..+++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~--------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG--------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSSCCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCccCCC--------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            45677777777666532        126778888888888776 466788999999999999999998888999999999


Q ss_pred             EEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257         224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY  303 (419)
Q Consensus       224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~  303 (419)
                      |+|++|+|+.++...|..+++|++|+|++|+|+.+|..+..+++|+.|+|++|+|+.++...+       ..+++|+.|+
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~  165 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF-------DRLSSLTHAY  165 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT-------TTCTTCCEEE
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH-------hCCCCCCEEE
Confidence            999999999999888999999999999999999999999999999999999999999887543       3478999999


Q ss_pred             ecCCccccccc-hHHHHHHHHhhcCC
Q psy4257         304 LEGNPVLCDDS-MRAVIDAMETINNN  328 (419)
Q Consensus       304 l~~Np~~c~~~-~~~~~~~l~~~~~~  328 (419)
                      +.+|||.|+|. +.|+..|+......
T Consensus       166 l~~N~~~c~c~~~~~l~~~~~~~~~~  191 (229)
T 3e6j_A          166 LFGNPWDCECRDIMYLRNWVADHTSI  191 (229)
T ss_dssp             CTTSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred             eeCCCccCCcchhHHHHHHHHhCccc
Confidence            99999999995 99999999874433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=183.38  Aligned_cols=177  Identities=24%  Similarity=0.323  Sum_probs=143.4

Q ss_pred             cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257         146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM  223 (419)
Q Consensus       146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  223 (419)
                      +.+++++|.+..++..        ....+++|++++|.+..++  ..+..+++|++|+|++|.|+++.+..|.++++|++
T Consensus        14 ~~l~~s~n~l~~iP~~--------~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH--------IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSSCCSC--------CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCcccCccC--------CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            4666777766665432        1234567777777777663  34788999999999999999998889999999999


Q ss_pred             EEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeE
Q psy4257         224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRI  302 (419)
Q Consensus       224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l  302 (419)
                      |+|++|.++.++...|..+++|++|+|++|+|..++ ..|..+++|+.|+|++|+|+.+++..+       ..+++|+.|
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L  158 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-------DTLHSLSTL  158 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT-------TTCTTCCEE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh-------cCCCCCCEE
Confidence            999999999999888999999999999999999984 678999999999999999999876543       348899999


Q ss_pred             EecCCccccccchHHHHHHHHhhcCCceeccccCCCCC
Q psy4257         303 YLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD  340 (419)
Q Consensus       303 ~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~  340 (419)
                      ++++|+|.|+|.+.|+..|++...   ...+...|..+
T Consensus       159 ~L~~N~l~c~c~l~~l~~~~~~~~---~~~~~~~C~~P  193 (220)
T 2v70_A          159 NLLANPFNCNCYLAWLGEWLRKKR---IVTGNPRCQKP  193 (220)
T ss_dssp             ECCSCCEECSGGGHHHHHHHHHSC---CBCCCCEEEES
T ss_pred             EecCcCCcCCCchHHHHHHHHhcC---ccccCCccCCC
Confidence            999999999999999999998632   22345566544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.90  E-value=7.5e-24  Score=210.08  Aligned_cols=220  Identities=16%  Similarity=0.204  Sum_probs=147.6

Q ss_pred             CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCC
Q psy4257          73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY  152 (419)
Q Consensus        73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  152 (419)
                      +|+.|++++|++.+++...   .++|++|+|++|.|+.+|   ..+++|+.|++++|.+++++ . +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECCC
Confidence            6777777777777754432   256777777777777776   34567777777777777643 3 443  777777777


Q ss_pred             CCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc
Q psy4257         153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  232 (419)
Q Consensus       153 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  232 (419)
                      |++..++.         .+++|+.|++++|.++.+|.   .+++|+.|+|++|.|++++.  |.  ++|+.|+|++|+|+
T Consensus       130 N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          130 NQLTMLPE---------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCSCCCC---------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred             CcCCCCCC---------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence            77766432         35677788888888777765   56788899999998888644  55  88999999999988


Q ss_pred             ccCchhccCCCCC-------ceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257         233 TLEETSKTFLPAL-------EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE  305 (419)
Q Consensus       233 ~~~~~~~~~l~~L-------~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~  305 (419)
                      .++.  +..  +|       +.|+|++|+|+.+|..+..+++|+.|+|++|.|++..+..+...............++++
T Consensus       194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~  269 (571)
T 3cvr_A          194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS  269 (571)
T ss_dssp             SCCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC-
T ss_pred             chhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeec
Confidence            8776  432  66       999999999999998888899999999999999876555443211100000111223333


Q ss_pred             C-------CccccccchHHHHHHHH
Q psy4257         306 G-------NPVLCDDSMRAVIDAME  323 (419)
Q Consensus       306 ~-------Np~~c~~~~~~~~~~l~  323 (419)
                      +       +| .|+|...|+.++.+
T Consensus       270 ~~~~~~~~~p-~~~~~~~Wl~~~~~  293 (571)
T 3cvr_A          270 DGQQNTLHRP-LADAVTAWFPENKQ  293 (571)
T ss_dssp             ---------C-CSHHHHTTCC----
T ss_pred             cccccccccc-chhhHHHHhhhhcc
Confidence            3       55 79999888866543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=9.4e-24  Score=195.47  Aligned_cols=225  Identities=18%  Similarity=0.180  Sum_probs=144.0

Q ss_pred             cccceeecccccCcc--Ccc--ccccccccceeecccccccCc-hhhh--cCCCCCCEEecCCCCCcccCh----hhhcC
Q psy4257          26 SKLQLLVIEQNQLEA--LPS--DIQLFSQLGSLYANNNRITSL-DGLL--RGLTKLQVFNMDFNQITMVRR----DEFQN   94 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~--i~~--~~~~~~~L~~L~l~~n~i~~l-~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~   94 (419)
                      ..++.|.+.++.+..  +..  .+..+.+|++|++++|.+.+. +..+  ..+++|+.|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            345666666665541  111  122345577777777777653 4444  667777777777777765322    34456


Q ss_pred             CCCCCEEEccCCcCcccc-ccccCCccCcEEeccccccccc---C-hhhhcCCCCccEEEcCCCCCccccCCCCCCCccc
Q psy4257          95 LHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF---L-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ  169 (419)
Q Consensus        95 ~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  169 (419)
                      +++|++|+|++|++..++ ..+..+++|++|++++|.+.+.   . ...+..+++|++|++++|++..++..  ....+.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV--CAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH--HHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH--HHHHHh
Confidence            777777777777776654 4566777777777777776542   1 12235667777777777777543321  000134


Q ss_pred             CcccccEEEcCCCCCcCc-hhhhcCC---CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCC
Q psy4257         170 GVTNIFELKLQHNEIENL-DGALMGI---HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL  245 (419)
Q Consensus       170 ~~~~L~~L~l~~n~l~~~-~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  245 (419)
                      .+++|++|+|++|.+..+ |..+..+   ++|++|+|++|+++.+ |..+.  ++|++|+|++|++++++.  +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCCC--TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCch--hhhCCCc
Confidence            556777777777777765 5444444   6888888888888876 44443  688888888888888743  5667888


Q ss_pred             ceEeCcCCcccc
Q psy4257         246 EELFVSHNSLTR  257 (419)
Q Consensus       246 ~~L~L~~N~i~~  257 (419)
                      +.|+|++|.|+.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=7.7e-23  Score=183.42  Aligned_cols=104  Identities=19%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccc
Q psy4257          51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN  129 (419)
Q Consensus        51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n  129 (419)
                      .++++++++.+..+|..+.  ++++.|++++|++.++.+..|.++++|++|+|++|.|+.++ ..+..+++|++|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            3445555555555443222  35556666666665555555555555555555555555442 22444445555555555


Q ss_pred             cccccChhhhcCCCCccEEEcCCCCCc
Q psy4257         130 QLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus       130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      .+.+..+..|..+++|++|++++|++.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCC
Confidence            444444344444444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.8e-24  Score=201.34  Aligned_cols=247  Identities=18%  Similarity=0.191  Sum_probs=130.0

Q ss_pred             CcEEecccccccccccccccc--cccceeecccccCccCccccccccccceeecccccccC--chhhhcCCCCCCEEecC
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTL--SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLRGLTKLQVFNMD   80 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~--~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~   80 (419)
                      ++.|+++++.+.  +..+..+  ++++.|++++|.+...+..+..+++|++|++++|.+..  ++..+..+++|+.|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            455666666554  2223333  56666666666666554444556666666666666553  45555666666666666


Q ss_pred             CCCCcccChhhhcCCCCCCEEEccCC-cCcc--ccccccCCccCcEEecccc-ccccc-ChhhhcCCC-CccEEEcCCCC
Q psy4257          81 FNQITMVRRDEFQNLHNLDSISLQNN-QITS--MNSSLSGLTKLAYLYLSHN-QLTEF-LLDDIRGLK-RLRTVDLSYNK  154 (419)
Q Consensus        81 ~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~--i~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~  154 (419)
                      +|.+.+..+..|+.+++|++|++++| .++.  ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            66665555555666666666666666 4552  4444555566666666666 55542 233445555 56666665553


Q ss_pred             CccccCCCCCCCcccCcccccEEEcCCCCC--cCchhhhcCCCCCcEEEcCCCC-CCCcCcccCCCCCCCcEEEccCCc-
Q psy4257         155 INKFGTRNEGKNQVQGVTNIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDISHNL-  230 (419)
Q Consensus       155 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-  230 (419)
                      +                           .+  ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. 
T Consensus       207 ~---------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          207 K---------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             G---------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             c---------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            2                           11  1233444455566666666665 444444455555666666666653 


Q ss_pred             CcccCchhccCCCCCceEeCcCCcccccCccCCCC-CCcCEEecCCCcccccch
Q psy4257         231 LTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL-PVLCKADLAHNNIKAINI  283 (419)
Q Consensus       231 l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l-~~L~~L~L~~N~l~~~~~  283 (419)
                      +.......+..+++|+.|++++| +..  ..+..+ ..+..|++++|+++++.+
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence            22222223445566666666655 221  112222 124444556666665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.8e-24  Score=201.28  Aligned_cols=245  Identities=16%  Similarity=0.146  Sum_probs=185.1

Q ss_pred             ccceeecccccccCchhhhcCC--CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEe
Q psy4257          50 QLGSLYANNNRITSLDGLLRGL--TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLY  125 (419)
Q Consensus        50 ~L~~L~l~~n~i~~l~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~  125 (419)
                      .++.++++++.+.  +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+..  ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            4788888888776  4445555  7889999999988887665 4568899999999998873  667788889999999


Q ss_pred             cccccccccChhhhcCCCCccEEEcCCC-CCccccCCCCCCCcccCcccccEEEcCCC-CCcC--chhhhcCCC-CCcEE
Q psy4257         126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN-KINKFGTRNEGKNQVQGVTNIFELKLQHN-EIEN--LDGALMGIH-GLSRL  200 (419)
Q Consensus       126 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~--~~~~~~~l~-~L~~L  200 (419)
                      +++|.+.+..+..+..+++|++|++++| .+....    ....+..+++|++|++++| .++.  ++..+..++ +|++|
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            9999888777778888899999999998 565321    1123567788999999999 8875  567778899 99999


Q ss_pred             EcCCC--CCC-CcCcccCCCCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCCc-ccccC-ccCCCCCCcCEEecC
Q psy4257         201 DLSHN--KLR-TISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHNS-LTRLD-KDFHGLPVLCKADLA  274 (419)
Q Consensus       201 ~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~l~-~~~~~l~~L~~L~L~  274 (419)
                      ++++|  .++ ...+..+..+++|++|++++|. +++.....+..+++|+.|++++|. +.... ..+..+++|+.|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            99999  454 2225566778999999999999 776666677889999999999995 32211 257889999999999


Q ss_pred             CCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257         275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       275 ~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      +| +..-....+         ...+..|++++|.+..
T Consensus       281 ~~-i~~~~~~~l---------~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          281 GI-VPDGTLQLL---------KEALPHLQINCSHFTT  307 (336)
T ss_dssp             TS-SCTTCHHHH---------HHHSTTSEESCCCSCC
T ss_pred             Cc-cCHHHHHHH---------HhhCcceEEecccCcc
Confidence            99 443222211         1234556688887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.88  E-value=1.8e-22  Score=184.86  Aligned_cols=193  Identities=24%  Similarity=0.362  Sum_probs=111.9

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +.++..+.+.++.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|++.++.+  +.++++|++|+++
T Consensus        23 l~~~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHHHhcCCCcccc-cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            34455555666655544 234556667777777777766654 5666777777777777766644  6667777777777


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|.++.++. +..+++|++|++++|.+.+.  ..+..+++|+.|++++|++..+                          
T Consensus        99 ~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------------------------  149 (291)
T 1h6t_A           99 ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------------------  149 (291)
T ss_dssp             SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------
T ss_pred             CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------
Confidence            777666543 66666666666666666653  3455566666666666655543                          


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL  258 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l  258 (419)
                          ..+..+++|+.|++++|.++++.+  +..+++|+.|+|++|.+++++  .+..+++|+.|++++|.+...
T Consensus       150 ----~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          150 ----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred             ----hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence                233444555555555555554432  445555555555555555543  244455555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=1.6e-23  Score=211.34  Aligned_cols=177  Identities=15%  Similarity=0.068  Sum_probs=81.3

Q ss_pred             ccccccceeecccccccCchhhhcCCCCCCEEecCCCCCc---ccChhhhcCCCCCCEEEccCCcCccccccccCCccCc
Q psy4257          46 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT---MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA  122 (419)
Q Consensus        46 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~  122 (419)
                      ..+++|+.|++++|.+.+++..+..+++|+.|+++.....   ......+..+.+|+.|+++++....++..+..+++|+
T Consensus       217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            3444444444444444444444444444444444421111   0011123334444444444444444555566677777


Q ss_pred             EEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-----------CCCcC--ch
Q psy4257         123 YLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-----------NEIEN--LD  188 (419)
Q Consensus       123 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~--~~  188 (419)
                      +|++++|.+.+... ..+..+++|+.|+++ +.+....    .......+++|++|++++           +.++.  +.
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~----l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG----LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH----HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH----HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            77777777554322 234666777777766 3222111    011123345566666662           33332  12


Q ss_pred             hhhcCCCCCcEEEcCCCCCCCcCcccCCC-CCCCcEEEcc
Q psy4257         189 GALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDIS  227 (419)
Q Consensus       189 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~  227 (419)
                      ..+..+++|++|+++.|.+++.....+.. +++|+.|+++
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            22234555555555555554433333332 4555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=6.2e-22  Score=196.32  Aligned_cols=185  Identities=19%  Similarity=0.260  Sum_probs=138.4

Q ss_pred             ccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      +|+.|+|++|.|+.+|..+  +++|+.|+|++|.|..+|   ..+++|+.|++++|+|++++.  |.+  +|++|+|++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC
Confidence            7888888888888877655  367888888888888777   456788888888888888654  544  7888888888


Q ss_pred             cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      +|+.+|.   .+++|+.|++++|.+++++.    .+++|+.|++++|++..++.       +.  ++|+.|+|++|.|+.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-------l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-------LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-------CC--TTCCEEECCSSCCSS
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-------hh--CCCCEEECcCCCCCc
Confidence            8888766   56788888888888877433    46788888888888877543       22  778888888888888


Q ss_pred             chhhhcCCCCC-------cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhcc
Q psy4257         187 LDGALMGIHGL-------SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT  240 (419)
Q Consensus       187 ~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  240 (419)
                      +|. +..  +|       +.|+|++|.|+.+ |..+..+++|+.|+|++|.+++..+..+.
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            776 443  66       8888888888887 44555688888899988888876555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.87  E-value=7.9e-22  Score=169.26  Aligned_cols=141  Identities=22%  Similarity=0.342  Sum_probs=105.8

Q ss_pred             cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257         175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS  254 (419)
Q Consensus       175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  254 (419)
                      +.+++++|.+..+|..+.  .+|++|++++|.|+.+ +..|..+++|+.|+|++|.|+.++...|..+++|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456666666666664332  4677777777777766 3667777777777777777777777777777777777777777


Q ss_pred             ccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257         255 LTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI  325 (419)
Q Consensus       255 i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~  325 (419)
                      |+.++ ..|..+++|+.|+|++|.|+.++...+.       .+++|+.+++++|||.|+|.+.||..|++..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~  154 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN-------DLSALSHLAIGANPLYCDCNMQWLSDWVKSE  154 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-------TCTTCCEEECCSSCEECSGGGHHHHHHHHHS
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh-------cCccccEEEeCCCCeecCCcCHHHHHHHHhc
Confidence            77776 3577778888888888888877765432       3788899999999999999999999999873

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=6.3e-22  Score=181.32  Aligned_cols=195  Identities=23%  Similarity=0.361  Sum_probs=144.6

Q ss_pred             cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257          49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH  128 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~  128 (419)
                      ..+..+.+..+.+..+.. +..+++|+.|++++|.+..+.  .+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HHHHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence            344455566666655432 234566777777777777663  36667777777777777776654 66666677777776


Q ss_pred             ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257         129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR  208 (419)
Q Consensus       129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~  208 (419)
                      |.+.+.  ..+..+++|+.|++++|++                             ..++ .+..+++|+.|++++|.++
T Consensus       100 n~l~~~--~~l~~l~~L~~L~L~~n~i-----------------------------~~~~-~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A          100 NKVKDL--SSLKDLKKLKSLSLEHNGI-----------------------------SDIN-GLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             SCCCCG--GGGTTCTTCCEEECTTSCC-----------------------------CCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CcCCCC--hhhccCCCCCEEECCCCcC-----------------------------CCCh-hhcCCCCCCEEEccCCcCC
Confidence            666653  2355555555555555554                             4442 4667889999999999999


Q ss_pred             CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchh
Q psy4257         209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQ  284 (419)
Q Consensus       209 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (419)
                      ++  ..+..+++|++|++++|.+.++.+  +..+++|+.|++++|.|+.++. +..+++|+.|++++|++...+..
T Consensus       148 ~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          148 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCEE
T ss_pred             cc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCccc
Confidence            87  578899999999999999999876  7889999999999999999974 89999999999999999876654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.86  E-value=1.5e-21  Score=195.50  Aligned_cols=197  Identities=24%  Similarity=0.368  Sum_probs=145.5

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +..+..+.+.++.+..+. .+..+.+|+.|++++|.|..++. +..+++|+.|+|++|++.++.+  |..+++|+.|+|+
T Consensus        20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            455666677777776553 35667778888888888887764 6778888888888888887755  7778888888888


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|.|..++ .+..+++|+.|+|++|.+.++  ..+..+++|+.|+|++|++..+.       .+..+++|+.|+|++|.+
T Consensus        96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT-------VLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             SSCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGGSCTTCSEEECCSSCC
T ss_pred             CCCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCch-------hhcccCCCCEEECcCCcC
Confidence            88887774 677778888888888887764  35777788888888888777652       456677777777777777


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS  238 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  238 (419)
                      ..++. +..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.+...+...
T Consensus       166 ~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          166 SDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             CCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence            77655 77777888888888887776  34777788888888888777654433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=4.7e-23  Score=207.82  Aligned_cols=299  Identities=14%  Similarity=0.085  Sum_probs=205.8

Q ss_pred             CCCCcEEeccccccc-----ccccccccccccceeecccccCccCccccccccccceeeccccccc----CchhhhcCCC
Q psy4257           2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT----SLDGLLRGLT   72 (419)
Q Consensus         2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~----~l~~~~~~l~   72 (419)
                      +++|++|++++|.++     .++..+..+++|+.|++++|.+..++..+..+++|++|+++.....    .....+..++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            455666666666654     2223344589999999999999888888899999999999853222    2234567788


Q ss_pred             CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhhcCCCCccEEEc
Q psy4257          73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL  150 (419)
Q Consensus        73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  150 (419)
                      +|+.|+++++....+ +..+..+++|++|+|++|.++..  ...+..+++|+.|+++++...+.....+..+++|+.|++
T Consensus       271 ~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            999999988654444 45677888999999999987632  344678899999999843322223334466788999999


Q ss_pred             CC-----------CCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhc-CCCCCcEEEcC----CCCCCCcC--
Q psy4257         151 SY-----------NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALM-GIHGLSRLDLS----HNKLRTIS--  211 (419)
Q Consensus       151 ~~-----------n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~Ls----~n~l~~~~--  211 (419)
                      ++           +.+.....    ......+++|++|++..|.++.. ...+. .+++|+.|+++    .|.+++..  
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             ecCccccccccccCccCHHHH----HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            83           44443211    11234578899999988887743 23333 47889999996    66777642  


Q ss_pred             ---cccCCCCCCCcEEEccCCc--CcccCchhc-cCCCCCceEeCcCCcccc--cCccCCCCCCcCEEecCCCcccccch
Q psy4257         212 ---PDDFIGLDSLKMLDISHNL--LTTLEETSK-TFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       212 ---~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~N~i~~--l~~~~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                         +..+.++++|+.|++++|.  +++.....+ ..+++|+.|+|++|++++  ++..+..+++|++|+|++|.++....
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence               2235568899999997644  554333322 347889999999999875  44456788999999999999764332


Q ss_pred             hhhhhcccceecCCcceeEEecCCcccc
Q psy4257         284 QLALKTQCQIFGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c  311 (419)
                      ..+      ...+++|+.|++++|.+..
T Consensus       506 ~~~------~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          506 AAA------VTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHH------HHHCSSCCEEEEESCBCCT
T ss_pred             HHH------HHhcCccCeeECcCCcCCH
Confidence            222      1237889999999998543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=3.7e-21  Score=192.72  Aligned_cols=194  Identities=23%  Similarity=0.356  Sum_probs=168.1

Q ss_pred             ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257          48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS  127 (419)
Q Consensus        48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~  127 (419)
                      +..+..+.+..+.+..+.. +..+.+|+.|++++|.+..+.  .|..+++|+.|+|++|+|..++. +..+++|+.|+|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence            4456777888888887643 456789999999999999885  58999999999999999999865 8899999999999


Q ss_pred             cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCC
Q psy4257         128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL  207 (419)
Q Consensus       128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l  207 (419)
                      +|.+.+..  .+..+++|+.|+|++|++..++       .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+
T Consensus        96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDIN-------GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             SSCCCCCT--TSTTCTTCCEEECTTSCCCCCG-------GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC
T ss_pred             CCCCCCCh--hhccCCCCCEEEecCCCCCCCc-------cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC
Confidence            99998853  7889999999999999998753       467889999999999999988 5688899999999999999


Q ss_pred             CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257         208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      .++.+  +..+++|+.|+|++|.|.+++  .+..+++|+.|+|++|.+...|
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence            98865  888999999999999999874  5778999999999999988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=1.1e-20  Score=162.06  Aligned_cols=155  Identities=23%  Similarity=0.252  Sum_probs=122.9

Q ss_pred             cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcc-cCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD-DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      +.+++++|.++.+|..+.  .+|++|++++|.++++.+. .|..+++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            567777777777776443  3788888888888888664 4788888999999999988888888888889999999999


Q ss_pred             cccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceec
Q psy4257         254 SLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIH  332 (419)
Q Consensus       254 ~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~  332 (419)
                      +|++++. .|..+++|++|+|++|+|+++.+..+       ..+++|+.+++++|+|.|+|.+.|+..|++....   ..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~---~~  158 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-------EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL---NG  158 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-------TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCC---SG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-------hcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCC---CC
Confidence            9988764 48888999999999999988766533       3478899999999999999999999999987422   22


Q ss_pred             cccCCCCCC
Q psy4257         333 GETICQPDS  341 (419)
Q Consensus       333 ~~~~c~~~~  341 (419)
                      ....|..+.
T Consensus       159 ~~~~C~~P~  167 (192)
T 1w8a_A          159 GAARCGAPS  167 (192)
T ss_dssp             GGCBBCSST
T ss_pred             CCCCCCCCh
Confidence            345675543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=2.8e-21  Score=174.24  Aligned_cols=172  Identities=22%  Similarity=0.325  Sum_probs=111.5

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +.++..++++++.++.++ .+..+++|+.|++++|.|..++ .+..+++|+.|++++|++.++.+  |.++++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            556667777777777665 5666777777777777777766 46666777777777777776654  6667777777777


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|+++.++....  ++|+.|++++|.+.+.  ..+..+++|+.|++++|++.                            
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~----------------------------  141 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK----------------------------  141 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC----------------------------
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC----------------------------
Confidence            777766643222  5666666666666553  23555555555555555544                            


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  236 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  236 (419)
                       .++ .+..+++|+.|++++|.++++  ..+..+++|+.|++++|.+...+.
T Consensus       142 -~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          142 -SIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -BCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -CCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence             333 355667777777777777766  456677777777777777766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.4e-20  Score=163.72  Aligned_cols=126  Identities=25%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             eeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257          30 LLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI  108 (419)
Q Consensus        30 ~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  108 (419)
                      .++++++.++.+|..+  .++|++|++++|.+..++ ..|..+++|++|++++|++.++.+..|.++++|++|++++|++
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            4444455555444332  234555555555555443 2344555555555555555555444455555555555555555


Q ss_pred             ccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257         109 TSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       109 ~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +.++. .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            54432 23445555555555555554444444455555555555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.8e-20  Score=161.76  Aligned_cols=178  Identities=21%  Similarity=0.284  Sum_probs=124.1

Q ss_pred             ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccc
Q psy4257          52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQ  130 (419)
Q Consensus        52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~  130 (419)
                      +.++++++.+..+|..+  .++|++|++++|++.++.+..|.++++|++|++++|+++.++. .|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56777777777777433  3578888888888888777777778888888888887777754 35667777777777777


Q ss_pred             ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCc
Q psy4257         131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI  210 (419)
Q Consensus       131 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~  210 (419)
                      +.+..+..|..+++|++|++++|++..++.                            ..+..+++|++|++++|.++++
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD----------------------------GVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCH----------------------------hHhccCCcCCEEECCCCcccee
Confidence            776665556666666666666666654321                            2345667777777877777777


Q ss_pred             CcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCC
Q psy4257         211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLP  266 (419)
Q Consensus       211 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~  266 (419)
                      .+..|..+++|++|++++|.+..       .+++|+.|+++.|++++ +|..+..++
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            66667777888888888876543       35677777777777774 565555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2.3e-20  Score=176.38  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhc-CCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc
Q psy4257          53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQ-NLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ  130 (419)
Q Consensus        53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~  130 (419)
                      .++++++.+..+|..+.  ..++.|+|++|+|.++.+..|. ++.+|+.|+|++|+|+.++ ..|..+++|++|+|++|.
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            44555555555443222  2355555555555555555554 5555555555555555543 235555555555555555


Q ss_pred             ccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257         131 LTEFLLDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       131 l~~~~~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +..+.+..|..+++|+.|+|++|+|..
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            555444445555555555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=9.6e-22  Score=198.32  Aligned_cols=299  Identities=14%  Similarity=0.136  Sum_probs=165.2

Q ss_pred             CCCCcEEecccc-cccc--cccccccccccceeecccccCccC-----ccccccccccceeeccccc--cc--Cchhhhc
Q psy4257           2 LTDLNWLFLNNN-RLKS--LEGQLGTLSKLQLLVIEQNQLEAL-----PSDIQLFSQLGSLYANNNR--IT--SLDGLLR   69 (419)
Q Consensus         2 l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~n~l~~i-----~~~~~~~~~L~~L~l~~n~--i~--~l~~~~~   69 (419)
                      +++|++|++++| .++.  ++..+..+++|+.|+|++|.++..     +.....+++|++|++++|.  +.  .+...+.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            567888888877 4543  333334577888888888876632     2223356678888887775  22  1333344


Q ss_pred             CCCCCCEEecCCC-CCcccChhhhcCCCCCCEEEccCCc-------------------------------CccccccccC
Q psy4257          70 GLTKLQVFNMDFN-QITMVRRDEFQNLHNLDSISLQNNQ-------------------------------ITSMNSSLSG  117 (419)
Q Consensus        70 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~-------------------------------l~~i~~~l~~  117 (419)
                      .+++|+.|++++| .+.+ .+..+..+++|+.|++..+.                               ...++..+..
T Consensus       209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            5677777777776 2222 22333444444444432221                               1112222224


Q ss_pred             CccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCC--------------------------C----CCCC
Q psy4257         118 LTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTR--------------------------N----EGKN  166 (419)
Q Consensus       118 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------~----~~~~  166 (419)
                      +++|+.|++++|.+.+... ..+..+++|+.|++++| +......                          .    ....
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            4556666666665443211 12334555555555544 2110000                          0    0000


Q ss_pred             cccCcccccEEEcCCCCCcCch-hhh-cCCCCCcEEEcC--C----CCCCCcCc-----ccCCCCCCCcEEEccCCcCcc
Q psy4257         167 QVQGVTNIFELKLQHNEIENLD-GAL-MGIHGLSRLDLS--H----NKLRTISP-----DDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       167 ~~~~~~~L~~L~l~~n~l~~~~-~~~-~~l~~L~~L~Ls--~----n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~  233 (419)
                      ....+++|+.|.+..|.++... ..+ ..+++|+.|+++  +    +.++....     ..+..+++|+.|+|++ .+++
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            1123556666666666665322 222 346778888887  3    45553221     1245567888888876 5555


Q ss_pred             cCchhccC-CCCCceEeCcCCcccccC-cc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257         234 LEETSKTF-LPALEELFVSHNSLTRLD-KD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV  309 (419)
Q Consensus       234 ~~~~~~~~-l~~L~~L~L~~N~i~~l~-~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~  309 (419)
                      .....+.. +++|+.|+|++|.+++.. .. ...+++|+.|+|++|.++.......      ...+++|+.|++++|+.
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN------ASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT------GGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH------HHhCCCCCEEeeeCCCC
Confidence            43333333 788999999999886532 22 2568899999999999854443322      12368899999999987

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=5.8e-20  Score=162.16  Aligned_cols=149  Identities=26%  Similarity=0.363  Sum_probs=100.8

Q ss_pred             cEEecccccccccccccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCC
Q psy4257           6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~   83 (419)
                      +.++++++.++.+|..+.  ++|+.|+|++|.|+.+ +..|..+++|++|+|++|.|..++ ..|..+++|+.|+|++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            456666777766665443  5677777777777765 445666777777777777776665 445667777777777777


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      |+++.+..|..+++|++|+|++|+|+.+|..+..+++|++|+|++|.+.++.+..|..+++|+.|++++|.+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            7777666666777777777777777777666666677777777777776666566666666777777666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.1e-20  Score=174.38  Aligned_cols=220  Identities=15%  Similarity=0.104  Sum_probs=139.3

Q ss_pred             CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc----ccccChhhhcCCCCc
Q psy4257          71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ----LTEFLLDDIRGLKRL  145 (419)
Q Consensus        71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L  145 (419)
                      +.+|+.|++.+ .++.+...+|.++.+|+.|++.+|.+..|+ ..|..+.++..+.+..+.    ...+....|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66777777766 666666666777777777777766666653 345555555555544421    112222334444444


Q ss_pred             c-EEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257         146 R-TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM  223 (419)
Q Consensus       146 ~-~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  223 (419)
                      + .+.+.....  ++..  .........++..+.+.++-...-...+ ..+++|+.|+|++|.++.+...+|.++.+|+.
T Consensus       179 ~~~i~~~~~~~--l~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMGK--LEDE--IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTCC--HHHH--HHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCCCc--HHHH--HhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            4 333322110  0000  0000012334445555443211111111 23788999999998899998888999999999


Q ss_pred             EEccCCcCcccCchhccCCCCCc-eEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCccee
Q psy4257         224 LDISHNLLTTLEETSKTFLPALE-ELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR  301 (419)
Q Consensus       224 L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~  301 (419)
                      |+|.+| +..++..+|.++.+|+ .+++.+ .++.|+ .+|.+|++|+.+++++|+++.|+...+       .++++|+.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF-------~~~~~L~~  325 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF-------GNGVPSKL  325 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT-------CTTCCCCE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh-------cCCcchhh
Confidence            999887 8888888999999998 999988 788886 678899999999999999998887754       34777777


Q ss_pred             EEe
Q psy4257         302 IYL  304 (419)
Q Consensus       302 l~l  304 (419)
                      |+.
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.2e-19  Score=158.98  Aligned_cols=151  Identities=25%  Similarity=0.346  Sum_probs=89.7

Q ss_pred             CEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257          99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK  178 (419)
Q Consensus        99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  178 (419)
                      +.++++++.++.+|..+.  ++|+.|++++|.+.++.+..|..+++|+.|+|++|++..+.                   
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-------------------   72 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-------------------   72 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-------------------
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-------------------
Confidence            456666666666665443  46666666666666665556666666666666666665442                   


Q ss_pred             cCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257         179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL  258 (419)
Q Consensus       179 l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l  258 (419)
                               +..|.++++|++|+|++|.|+.+.+..|.++++|++|+|++|+|..+.+..|..+++|+.|+|++|+|+.+
T Consensus        73 ---------~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           73 ---------PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             ---------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ---------HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence                     23344555555555555555555555555556666666666666665555555566666666666666665


Q ss_pred             Cc-cCCCCCCcCEEecCCCccc
Q psy4257         259 DK-DFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       259 ~~-~~~~l~~L~~L~L~~N~l~  279 (419)
                      +. .|..+++|+.|+|++|.+.
T Consensus       144 ~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          144 AKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCEE
T ss_pred             CHHHHhCCCCCCEEEeCCCCcC
Confidence            53 3555666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=2.9e-20  Score=160.22  Aligned_cols=153  Identities=15%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             ccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        23 ~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      ..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|++.+..+..|..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            44778888888888888777 6788888888888888777765 477788888888888888876667788888888888


Q ss_pred             ccCCcCcc-ccccccCCccCcEEeccccc-ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcC
Q psy4257         103 LQNNQITS-MNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ  180 (419)
Q Consensus       103 L~~n~l~~-i~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~  180 (419)
                      +++|.++. .+..+..+++|++|++++|. +... + .+..+++|+.|++++|++..++       .+..+++|+.|+++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-------~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-------GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-------TGGGCSSCCEEEEC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-------HhccCCCCCEEEee
Confidence            88888875 45667788888888888887 6554 2 6777888888888888887653       35677888888888


Q ss_pred             CCCCcC
Q psy4257         181 HNEIEN  186 (419)
Q Consensus       181 ~n~l~~  186 (419)
                      +|++..
T Consensus       190 ~N~i~~  195 (197)
T 4ezg_A          190 SQTIGG  195 (197)
T ss_dssp             BC----
T ss_pred             CcccCC
Confidence            887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=9.5e-20  Score=159.73  Aligned_cols=149  Identities=25%  Similarity=0.375  Sum_probs=90.7

Q ss_pred             cEEecccccccccccccccccccceeecccccCccCc--cccccccccceeecccccccCch-hhhcCCCCCCEEecCCC
Q psy4257           6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFN   82 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~--~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n   82 (419)
                      +.+++++|.++.+|..+.  ..++.|+|++|.|+.++  ..|..+++|+.|++++|.|..++ ..|.++++|+.|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            356666666666655442  24566666666666552  23566666666666666666654 35666666666666666


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257          83 QITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus        83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      ++.++.+..|.++++|++|+|++|+|+.+ |..|..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            66666666666666666666666666655 345566666666666666666655566666666666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=1.5e-20  Score=169.46  Aligned_cols=171  Identities=25%  Similarity=0.309  Sum_probs=103.5

Q ss_pred             ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257          48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS  127 (419)
Q Consensus        48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~  127 (419)
                      +.++..++++++.+..++ .+..+++|+.|++++|++..+.  .+..+++|++|++++|+|+.++. +..+++|++|++ 
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L-   92 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV-   92 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC-
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC-
Confidence            445555566666665554 2445555666666666555543  35555555555555555555433 444444444444 


Q ss_pred             cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCC
Q psy4257         128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL  207 (419)
Q Consensus       128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l  207 (419)
                                             ++|++..++..       .. .+|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus        93 -----------------------~~N~l~~l~~~-------~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           93 -----------------------NRNRLKNLNGI-------PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             -----------------------CSSCCSCCTTC-------CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC
T ss_pred             -----------------------CCCccCCcCcc-------cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC
Confidence                                   44444433211       11 44555555555555554 366778888888888888


Q ss_pred             CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257         208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      +++.  .+..+++|+.|+|++|.+.++  ..+..+++|+.|++++|.+...+
T Consensus       141 ~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          141 KSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            7762  577778888888888888777  45667778888888888777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.82  E-value=3.6e-19  Score=150.57  Aligned_cols=155  Identities=23%  Similarity=0.320  Sum_probs=130.5

Q ss_pred             ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      .+.++++++.+..+|..+  .++|++|++++|.+.++.+..|..+++|++|++++|.++.++...|..+++|++|+|++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            467777888887777543  368999999999999988888899999999999999999998888888999999999999


Q ss_pred             cccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCcee
Q psy4257         254 SLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKI  331 (419)
Q Consensus       254 ~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~  331 (419)
                      +|++++. .|..+++|+.|++++|+|+.++...+.       .+++|+.+++++|+|.|+|. +.|+..|+...  ....
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~--~~~~  157 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKE  157 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT--GGGE
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhc-------CCcccCEEEecCCCeeccCccHHHHHHHHhhC--cccc
Confidence            9999875 478899999999999999988876432       37889999999999999997 88999998874  3344


Q ss_pred             ccccCCCC
Q psy4257         332 HGETICQP  339 (419)
Q Consensus       332 ~~~~~c~~  339 (419)
                      .+...|..
T Consensus       158 ~~~~~C~~  165 (177)
T 2o6r_A          158 QGSAKCSG  165 (177)
T ss_dssp             ESCCBBTT
T ss_pred             ccCcEeCC
Confidence            56677765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=4.2e-22  Score=198.38  Aligned_cols=189  Identities=18%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             ccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEe
Q psy4257          46 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY  125 (419)
Q Consensus        46 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~  125 (419)
                      ..+++|+.|+|++|.+..||..++.+++|+.|++++|......+..+.          ..+....+|..+..+++|+.|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~----------~~~~~~~~~~~l~~l~~L~~L~  415 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR----------ALDPLLYEKETLQYFSTLKAVD  415 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------HHCTGGGHHHHHHHHHHHHHHC
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH----------hcccccCCHHHHHHHHhcccCc
Confidence            345667777777777777776677777777777655431000000000          0011112234444445555554


Q ss_pred             -cccc-------------cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh
Q psy4257         126 -LSHN-------------QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL  191 (419)
Q Consensus       126 -l~~n-------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  191 (419)
                       ++.|             .+..+.+      ..|+.|++++|.+..++       .+..+++|+.|+|++|.+..+|..+
T Consensus       416 ~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-------~~~~l~~L~~L~Ls~N~l~~lp~~~  482 (567)
T 1dce_A          416 PMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-------HLEQLLLVTHLDLSHNRLRALPPAL  482 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-------CGGGGTTCCEEECCSSCCCCCCGGG
T ss_pred             chhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-------CccccccCcEeecCcccccccchhh
Confidence             3333             3322211      12455555555554432       1334444444444444444444444


Q ss_pred             cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccC-chhccCCCCCceEeCcCCcccccC
Q psy4257         192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE-ETSKTFLPALEELFVSHNSLTRLD  259 (419)
Q Consensus       192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~l~  259 (419)
                      ..+++|+.|+|++|.|+++ | .|..+++|+.|+|++|+|+++. +..+..+++|+.|+|++|.+++++
T Consensus       483 ~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          483 AALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             hcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            4445555555555555443 2 3444444555555555444443 334444444444444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=2.1e-21  Score=195.83  Aligned_cols=294  Identities=15%  Similarity=0.089  Sum_probs=193.4

Q ss_pred             CCCCcEEeccccc--cc--ccccccccccccceeecccc-cCccCccccccccccceeeccccc----------------
Q psy4257           2 LTDLNWLFLNNNR--LK--SLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNR----------------   60 (419)
Q Consensus         2 l~~L~~L~l~~n~--l~--~l~~~~~~~~~L~~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~n~----------------   60 (419)
                      +++|++|++++|.  +.  .+...+..+++|+.|++++| .+..++..+..+++|+.|++..+.                
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            5689999999987  32  22222344799999999988 455666667777788888754432                


Q ss_pred             ---------------ccCchhhhcCCCCCCEEecCCCCCcccChh-hhcCCCCCCEEEccCCcCc--cccccccCCccCc
Q psy4257          61 ---------------ITSLDGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLA  122 (419)
Q Consensus        61 ---------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~--~i~~~l~~l~~L~  122 (419)
                                     ...++..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| +.  .++.....+++|+
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence                           112333334567888888888886543322 2457788888888877 43  1222234577888


Q ss_pred             EEeccc---------ccccccChhhh-cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcC--C----CCCcC
Q psy4257         123 YLYLSH---------NQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ--H----NEIEN  186 (419)
Q Consensus       123 ~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~  186 (419)
                      .|++.+         +.+++.....+ .++++|+.|.+..|.+......    .....+++|+.|+++  +    +.++.
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~  417 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI----TIARNRPNMTRFRLCIIEPKAPDYLTL  417 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH----HHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH----HHHhhCCCcceeEeecccCCCcccccC
Confidence            888733         44544333333 3478888888877777653211    112357899999998  4    56663


Q ss_pred             c------hhhhcCCCCCcEEEcCCCCCCCcCcccCCC-CCCCcEEEccCCcCcccCchhc-cCCCCCceEeCcCCccccc
Q psy4257         187 L------DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL  258 (419)
Q Consensus       187 ~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i~~l  258 (419)
                      .      +..+..+++|+.|++++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.++..
T Consensus       418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            3      23356789999999987 666554444544 7899999999999876544444 5589999999999999653


Q ss_pred             C--ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCC
Q psy4257         259 D--KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN  307 (419)
Q Consensus       259 ~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~N  307 (419)
                      .  ..+..+++|+.|++++|+++.-....+.      ..++.+....+.++
T Consensus       497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          497 ALLANASKLETMRSLWMSSCSVSFGACKLLG------QKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHTGGGGGGSSEEEEESSCCBHHHHHHHH------HHCTTEEEEEECSS
T ss_pred             HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH------HhCCCCEEEEecCC
Confidence            2  3456689999999999998543333221      23566655555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=2.7e-19  Score=166.91  Aligned_cols=226  Identities=13%  Similarity=0.112  Sum_probs=166.3

Q ss_pred             cCcc-cccc--------ccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc--
Q psy4257          40 ALPS-DIQL--------FSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ--  107 (419)
Q Consensus        40 ~i~~-~~~~--------~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~--  107 (419)
                      .||. .|.+        +.+|+.|+|.+ .+..|+ .+|.+|.+|+.|++.+|.+..+.+.+|.++.++..+.+..+.  
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence            4443 4777        99999999999 899886 689999999999999999999999999998888877776632  


Q ss_pred             --Cccc-cccccCCccCc-EEeccccc-ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC
Q psy4257         108 --ITSM-NSSLSGLTKLA-YLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN  182 (419)
Q Consensus       108 --l~~i-~~~l~~l~~L~-~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  182 (419)
                        ...+ ...|..+..|+ .+.+.... +............++..+.+.++-.. ...    ......+++|+.|+|++|
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~----~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADF----KLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHH----HHHHHHCTTCCEEECTTB
T ss_pred             hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHH----HHHHHhcCCCeEEECCCC
Confidence              2223 23455666666 44443322 11111111112455666666554211 100    001123678889999988


Q ss_pred             CCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc-EEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-
Q psy4257         183 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK-MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-  259 (419)
Q Consensus       183 ~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-  259 (419)
                      .++.++ .+|.++.+|+.|++.+| +..+...+|.++.+|+ .|++.+ .++.+...+|.++.+|+.|++++|+++.|+ 
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            888887 56788999999999987 8889899999999999 999988 889999999999999999999999999988 


Q ss_pred             ccCCCCCCcCEEec
Q psy4257         260 KDFHGLPVLCKADL  273 (419)
Q Consensus       260 ~~~~~l~~L~~L~L  273 (419)
                      ..|.++++|+.++.
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence            46899999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=4.2e-19  Score=152.87  Aligned_cols=154  Identities=21%  Similarity=0.302  Sum_probs=102.9

Q ss_pred             cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcc-ccccccCCccCcE
Q psy4257          45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAY  123 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-i~~~l~~l~~L~~  123 (419)
                      ...+++|+.|++++|.|..++ .+..+++|+.|++++|.+..+  ..+..+++|++|++++|.++. .+..+..+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            356677788888888777777 467777788888887766555  357777777777777777775 4566777777777


Q ss_pred             EecccccccccChhhhcCCCCccEEEcCCCC-CccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEc
Q psy4257         124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK-INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL  202 (419)
Q Consensus       124 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L  202 (419)
                      |++++|.+.+..+..+..+++|+.|++++|+ +..                             ++ .+..+++|++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------------------------~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----------------------------IM-PLKTLPELKSLNI  166 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------------------------CG-GGGGCSSCCEEEC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----------------------------cH-hhcCCCCCCEEEC
Confidence            7777777776666667777777777777775 443                             33 3455666666666


Q ss_pred             CCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257         203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTT  233 (419)
Q Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  233 (419)
                      ++|.++++.  .+..+++|++|++++|+|.+
T Consensus       167 ~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          167 QFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            666666553  45566666666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=8.1e-22  Score=196.34  Aligned_cols=203  Identities=23%  Similarity=0.252  Sum_probs=157.1

Q ss_pred             cCCCCCCEEEccCCcCccccccccCCccCcEEeccccc-------------ccccChhhhcCCCCccEEE-cCCCCCccc
Q psy4257          93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ-------------LTEFLLDDIRGLKRLRTVD-LSYNKINKF  158 (419)
Q Consensus        93 ~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~  158 (419)
                      ..+++|+.|+|++|++..+|..++.+++|+.|++++|.             +.+..+..+..+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            56788999999999999999999999999999987765             4555667778888888888 666654432


Q ss_pred             cCCCCCCCcccC--cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257         159 GTRNEGKNQVQG--VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  236 (419)
Q Consensus       159 ~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  236 (419)
                      .........+..  ...|+.|+|++|.++.+|. +..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|.|++++ 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc-
Confidence            210000000000  1258899999999999987 88899999999999999976 678899999999999999999976 


Q ss_pred             hhccCCCCCceEeCcCCccccc--CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257         237 TSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY  303 (419)
Q Consensus       237 ~~~~~l~~L~~L~L~~N~i~~l--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~  303 (419)
                       .+..+++|+.|+|++|+|+++  |..+..+++|+.|+|++|.|+++++.....    +..+++|+.|+
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l----~~~lp~L~~L~  566 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL----AEMLPSVSSIL  566 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH----HHHCTTCSEEE
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH----HHHCcccCccC
Confidence             688899999999999999998  788999999999999999999887643211    12266777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.78  E-value=1.2e-17  Score=159.29  Aligned_cols=260  Identities=15%  Similarity=0.224  Sum_probs=208.9

Q ss_pred             ccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          25 LSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      +..++.+.+.+ .++.|+. .|.++ +|+.+.+.++ +..|+ .+|.++ +|+.+.+.. .+..+...+|.+|.+|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            56788887764 4666754 57765 7999999876 77775 567774 799999986 78899999999999999999


Q ss_pred             ccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC
Q psy4257         103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN  182 (419)
Q Consensus       103 L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  182 (419)
                      +.+|.++.|+.....+.+|+.+.+..+ +..+...+|.++.+|+.+++..+ +..++..     .|.. .+|+.+.+ .+
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~-----aF~~-~~L~~i~l-p~  257 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE-----AFRE-SGITTVKL-PN  257 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT-----TTTT-CCCSEEEE-ET
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc-----cccc-CCccEEEe-CC
Confidence            999999999765545789999999854 77888889999999999999875 5555443     4555 68999999 45


Q ss_pred             CCcCch-hhhcCCCCCcEEEcCCCCCC-----CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257         183 EIENLD-GALMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT  256 (419)
Q Consensus       183 ~l~~~~-~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  256 (419)
                      .+..++ .+|.++.+|+.+++.+|.+.     .+...+|.+|.+|+.++|. +.+..+...+|.++.+|+.+.|.+| ++
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            577774 67889999999999888765     6788899999999999999 5699999999999999999999655 77


Q ss_pred             ccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCc
Q psy4257         257 RLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNP  308 (419)
Q Consensus       257 ~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np  308 (419)
                      .|+ .+|.++ +|+.+++.+|.+..+....+       .++ ..+..|++..+.
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F-------~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW-------YGFPDDITVIRVPAES  381 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSC-------CCSCTTCCEEEECGGG
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccc-------cCCCCCccEEEeCHHH
Confidence            876 568899 99999999999888776543       334 356788887664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.77  E-value=9.8e-18  Score=159.89  Aligned_cols=235  Identities=14%  Similarity=0.225  Sum_probs=109.9

Q ss_pred             ccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +|+.+.|.++ ++.|+. +|.++ +|+.+.+.+ .+..|+ .+|.+|.+|+.+++.+|++..+...+|. +.+|+.+.|.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555555433 444432 23332 355555543 344443 3455555555555555555555555554 3455555554


Q ss_pred             CCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         105 NNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       105 ~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      .+ +..|+ ..|.++.+|+.+++..+ +..+...+|.+ .+|+.+.+. +.+..++..     .|..+.+|+.+.+.++.
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~-----aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR-----AFYYCPELAEVTTYGST  282 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT-----TTTTCTTCCEEEEESSC
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh-----HhhCCCCCCEEEeCCcc
Confidence            22 44442 34445555555555442 34444444444 445555552 233333222     44455555555554444


Q ss_pred             Cc-----Cch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         184 IE-----NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       184 l~-----~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      +.     .++ .+|.++.+|+.+++. +.+..+...+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+++.+|.+..
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            33     222 344455555555555 2344555555555555555555332 445555555555 55555555555544


Q ss_pred             cC-ccCCCCC-CcCEEecCCCc
Q psy4257         258 LD-KDFHGLP-VLCKADLAHNN  277 (419)
Q Consensus       258 l~-~~~~~l~-~L~~L~L~~N~  277 (419)
                      ++ ..|.+++ .++.|.+..+.
T Consensus       360 l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          360 VFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCCSSCCCSCTTCCEEEECGGG
T ss_pred             cccccccCCCCCccEEEeCHHH
Confidence            43 2344442 44455554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.77  E-value=5.6e-18  Score=142.11  Aligned_cols=123  Identities=24%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCC
Q psy4257         197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAH  275 (419)
Q Consensus       197 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~  275 (419)
                      .+.+++++|.++.++ ..+.  .+|++|+|++|+|+++.+..|..+++|++|+|++|+|+.++. .|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345556666555552 2222  556666666666666655556666666666666666666653 345666666666666


Q ss_pred             CcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCc
Q psy4257         276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNT  329 (419)
Q Consensus       276 N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~  329 (419)
                      |+|+.++...+       ..+++|+.|++++|||.|+|. +.|+..|++......
T Consensus        88 N~l~~~~~~~~-------~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~  135 (170)
T 3g39_A           88 NQLKSIPRGAF-------DNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV  135 (170)
T ss_dssp             SCCCCCCTTTT-------TTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             CccCEeCHHHh-------cCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence            66666665432       237788899999999999995 999999999855444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.74  E-value=3.3e-17  Score=137.87  Aligned_cols=121  Identities=23%  Similarity=0.295  Sum_probs=78.4

Q ss_pred             cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCC
Q psy4257         198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN  276 (419)
Q Consensus       198 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N  276 (419)
                      +.+++++|.+..++ ..+.  .+|++|+|++|+|.++++..|..+++|+.|+|++|+|+.++.. |..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45555555555542 2222  4556666666666666555555666666666666666666533 456666666666666


Q ss_pred             cccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCC
Q psy4257         277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNN  328 (419)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~  328 (419)
                      +|+.++...+       ..+++|+.|++++|+|.|+|. +.|+..|++.....
T Consensus        92 ~l~~l~~~~~-------~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~  137 (174)
T 2r9u_A           92 HLKSIPRGAF-------DNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI  137 (174)
T ss_dssp             CCCCCCTTTT-------TTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred             ccceeCHHHh-------ccccCCCEEEeCCCCcccccccHHHHHHHHHhcccc
Confidence            6666665432       237788889999999999995 99999999875443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=6.8e-18  Score=141.36  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=117.8

Q ss_pred             ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      .++|+.|++++|.++  .+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|++.+..+..+.++++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            578999999999998  8888888999999999999999988 6788899999999999999987677788899999999


Q ss_pred             ccCCcCcccc--ccccCCccCcEEecccccccccCh---hhhcCCCCccEEEcCCCCCccccC
Q psy4257         103 LQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLSYNKINKFGT  160 (419)
Q Consensus       103 L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~  160 (419)
                      +++|.++.++  ..+..+++|++|++++|.+.+...   ..+..+++|+.|++++|.+..++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            9999999876  678889999999999999988765   578889999999999998876653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=8.1e-18  Score=140.93  Aligned_cols=133  Identities=25%  Similarity=0.326  Sum_probs=121.7

Q ss_pred             CCCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257           2 LTDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN   78 (419)
Q Consensus         2 l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~   78 (419)
                      .++|++|++++|.++  .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. ++..+..+++|+.|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            367999999999998  8888788899999999999999988 778999999999999999998 788888899999999


Q ss_pred             cCCCCCcccCh-hhhcCCCCCCEEEccCCcCccccc----cccCCccCcEEecccccccccC
Q psy4257          79 MDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLSHNQLTEFL  135 (419)
Q Consensus        79 l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~----~l~~l~~L~~L~l~~n~l~~~~  135 (419)
                      +++|.+.++.. ..|..+++|++|++++|.++.++.    .+..+++|++|++++|.+....
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            99999999854 789999999999999999998876    7899999999999999987653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1.7e-18  Score=177.56  Aligned_cols=153  Identities=20%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             CCcEEeccccccccccccccccccccee-----ecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEe
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLL-----VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN   78 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L-----~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~   78 (419)
                      .++.|+|.+|.+...+..+.....|..+     ++..|.+...+..+..+..|+.|+|++|.+..++..+..+++|+.|+
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~  253 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY  253 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence            3566667666666544333222222222     22233333334556667777777777777777765566677777777


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |++|.|..+ +..|.++++|++|+|++|.|+.+|..+..+++|++|+|++|.+..+ +..|..+++|+.|+|++|.+.+.
T Consensus       254 Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          254 LNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSH
T ss_pred             eeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCC
Confidence            777777744 3556777777777777777777777777777777777777777653 44477777777777777776643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=3.7e-17  Score=139.97  Aligned_cols=126  Identities=24%  Similarity=0.396  Sum_probs=87.0

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCchh--hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG--LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      +.|++++++++.+|..+..  +|++|++++|.|..++.  .|..+++|+.|++++|+|+++.+..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5667777777766654432  66777777777766653  3667777777777777777777777777777777777777


Q ss_pred             cCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257         107 QITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus       107 ~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      +|+.++ ..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            777664 34666777777777777777766667777777777777777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2.3e-18  Score=176.59  Aligned_cols=217  Identities=18%  Similarity=0.139  Sum_probs=110.6

Q ss_pred             ccccceeecccccCccCcccccccccccee-----ecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCC
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSL-----YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD   99 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L-----~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~   99 (419)
                      .++++.|+|.+|.+..++..+.....|+.+     ++..|.+...+..|..+..|+.|+|++|.+..++... .++++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCC
Confidence            466888999999888776554333333333     3344555545677888999999999999999876654 4889999


Q ss_pred             EEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEc
Q psy4257         100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL  179 (419)
Q Consensus       100 ~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l  179 (419)
                      +|+|++|.|+.+|..|..+++|++|+|++|.++. ++..|..+++|++|+|++|.|..++.      .+..+++|+.|+|
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~------~~~~l~~L~~L~L  323 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPW------EFGNLCNLQFLGV  323 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCCCS------STTSCTTCCCEEC
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCccCh------hhhcCCCccEEeC
Confidence            9999999999999889999999999999999985 47788999999999999999886643      3778899999999


Q ss_pred             CCCCCcCc-hhhhcCCC-CCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCC--------cCcccCchhccCCCCCceEe
Q psy4257         180 QHNEIENL-DGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN--------LLTTLEETSKTFLPALEELF  249 (419)
Q Consensus       180 ~~n~l~~~-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~  249 (419)
                      ++|.+... |..+..+. .+..|+|++|.+++..|.      .|+.|+++.|        .+.......+..+..+....
T Consensus       324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~  397 (727)
T 4b8c_D          324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTV  397 (727)
T ss_dssp             TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-------------------------------------
T ss_pred             CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceee
Confidence            99999855 34443221 123467777877765543      3455556655        22222222333344445555


Q ss_pred             CcCCcc
Q psy4257         250 VSHNSL  255 (419)
Q Consensus       250 L~~N~i  255 (419)
                      +++|-+
T Consensus       398 ls~Nil  403 (727)
T 4b8c_D          398 LSYNTL  403 (727)
T ss_dssp             ----CC
T ss_pred             eecccc
Confidence            555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=5.1e-17  Score=139.15  Aligned_cols=126  Identities=21%  Similarity=0.364  Sum_probs=84.0

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI  108 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  108 (419)
                      +.++++++.++.+|..+.  .+|++|++++|.|..+|..|.++++|+.|++++|+|+++.+..|.++++|++|+|++|+|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            456666666666665442  466667777776666666666667777777777777776666677777777777777777


Q ss_pred             cccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257         109 TSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus       109 ~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                      +.++ ..|..+++|++|+|++|.+..+.+..|..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6664 34666667777777777766666556666667777777766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=2.6e-17  Score=134.90  Aligned_cols=127  Identities=23%  Similarity=0.224  Sum_probs=106.1

Q ss_pred             ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257          25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS  102 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  102 (419)
                      .++|+.|++++|.++  .+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            578889999999888  7777788888899999998888888 6688888899999999998887677777888899999


Q ss_pred             ccCCcCcccc--ccccCCccCcEEecccccccccCh---hhhcCCCCccEEEcCC
Q psy4257         103 LQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLSY  152 (419)
Q Consensus       103 L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~  152 (419)
                      +++|.++.++  ..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999888765  678888889999999888887765   5678888888888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=2.4e-17  Score=139.12  Aligned_cols=135  Identities=20%  Similarity=0.261  Sum_probs=111.5

Q ss_pred             ccccccccceeecccccCccCcccccccc-ccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCC
Q psy4257          21 QLGTLSKLQLLVIEQNQLEALPSDIQLFS-QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD   99 (419)
Q Consensus        21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~-~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~   99 (419)
                      .+..+.+|+.|++++|+++.++. +..+. +|+.|++++|.|..+ ..+..+++|+.|++++|+|.++++..|..+++|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            35568889999999999998854 44444 899999999999888 5688889999999999999988877778899999


Q ss_pred             EEEccCCcCccccc--cccCCccCcEEecccccccccChh---hhcCCCCccEEEcCCCCCcc
Q psy4257         100 SISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLD---DIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       100 ~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~  157 (419)
                      +|++++|+|..+|.  .+..+++|+.|++++|.+......   .+..+++|+.|++++|.+..
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999988876  788888999999999998865433   47788888888888887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=3.9e-17  Score=133.81  Aligned_cols=125  Identities=26%  Similarity=0.396  Sum_probs=114.2

Q ss_pred             CCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccC-chhhhcCCCCCCEEec
Q psy4257           3 TDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNM   79 (419)
Q Consensus         3 ~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l   79 (419)
                      ++|++|++++|.++  .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            57999999999998  7888788899999999999999988 778999999999999999998 8888888999999999


Q ss_pred             CCCCCcccC-hhhhcCCCCCCEEEccCCcCccccc----cccCCccCcEEeccc
Q psy4257          80 DFNQITMVR-RDEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLSH  128 (419)
Q Consensus        80 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~----~l~~l~~L~~L~l~~  128 (419)
                      ++|++.++. +..+..+++|++|++++|.++.++.    .+..+++|++|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999874 4789999999999999999998865    688899999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1.1e-16  Score=135.15  Aligned_cols=130  Identities=22%  Similarity=0.339  Sum_probs=115.7

Q ss_pred             CCCCcEEecccccccccccccccc-cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM   79 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~-~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l   79 (419)
                      +.+|++|++++|.++.++. +..+ ++|+.|++++|.|+.+ ..+..+++|+.|++++|.|..++ ..|..+++|+.|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            5789999999999998865 5554 4999999999999988 67899999999999999999987 45589999999999


Q ss_pred             CCCCCcccCh-hhhcCCCCCCEEEccCCcCcccccc----ccCCccCcEEecccccccc
Q psy4257          80 DFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSS----LSGLTKLAYLYLSHNQLTE  133 (419)
Q Consensus        80 ~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~~----l~~l~~L~~L~l~~n~l~~  133 (419)
                      ++|+|..++. ..+..+++|+.|++++|.+..+|..    +..+++|+.|++++|.+..
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999988764 4789999999999999999998764    8899999999999998765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=2.2e-15  Score=127.14  Aligned_cols=88  Identities=27%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             CCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEe
Q psy4257         194 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKAD  272 (419)
Q Consensus       194 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~  272 (419)
                      +++|++|++++|.++++.+..|..+++|++|+|++|++++++...|..+++|+.|+|++|+++.++.. |..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34444444444444444444444455555555555555555444444455555555555555555432 34555566666


Q ss_pred             cCCCccccc
Q psy4257         273 LAHNNIKAI  281 (419)
Q Consensus       273 L~~N~l~~~  281 (419)
                      +++|.+...
T Consensus       131 l~~N~~~~~  139 (177)
T 2o6r_A          131 LHTNPWDCS  139 (177)
T ss_dssp             CCSSCBCCC
T ss_pred             ecCCCeecc
Confidence            666655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.64  E-value=1.5e-15  Score=142.43  Aligned_cols=131  Identities=22%  Similarity=0.320  Sum_probs=77.3

Q ss_pred             EEcCCC-CCCCcCcccCCCCCCCcEEEccC-CcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCC
Q psy4257         200 LDLSHN-KLRTISPDDFIGLDSLKMLDISH-NLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN  276 (419)
Q Consensus       200 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N  276 (419)
                      ++++++ .++.+ |. |..+.+|+.|+|++ |.|..+++..|..+++|+.|+|++|+|++++ ..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 45544 22 55555555555553 5555555555555555555555555555544 23455556666666666


Q ss_pred             cccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      +|+.++...+.       .+. |+.|+|.+|+|.|+|.+.||..|++...... ..+...|..+.
T Consensus        91 ~l~~~~~~~~~-------~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l-~~~~~~C~~~~  146 (347)
T 2ifg_A           91 ALESLSWKTVQ-------GLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGV-PEQKLQCHGQG  146 (347)
T ss_dssp             CCSCCCSTTTC-------SCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSC-GGGCCCCSSSS
T ss_pred             ccceeCHHHcc-------cCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccc-cccCCCCCCCh
Confidence            66655544332       123 7889999999999999999999998742221 23555675443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=9.8e-18  Score=144.41  Aligned_cols=111  Identities=27%  Similarity=0.354  Sum_probs=68.0

Q ss_pred             ccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          21 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++|+.|++++|++.+++  .+..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCE
Confidence            4555666666666666666665 566666666666666666666655555566666666666666542  4555666666


Q ss_pred             EEccCCcCccccc--cccCCccCcEEeccccccccc
Q psy4257         101 ISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEF  134 (419)
Q Consensus       101 L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~  134 (419)
                      |++++|+++.++.  .+..+++|++|++++|.+.+.
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            6666666665542  455666666666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=4.2e-14  Score=134.98  Aligned_cols=270  Identities=14%  Similarity=0.206  Sum_probs=142.1

Q ss_pred             ccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCC----------------
Q psy4257          21 QLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFN----------------   82 (419)
Q Consensus        21 ~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n----------------   82 (419)
                      +|..|.+|+.+.|.. .++.|.. +|.++.+|+.+++.++ +..|+ .+|.++.+|+.+.+..+                
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence            344455555555542 2444432 3555555555555433 33332 34444444444433221                


Q ss_pred             -----CCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257          83 -----QITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus        83 -----~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                           .+..+...+|.++.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ +..+....|.++..|+.+.+..+...
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~  221 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY  221 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred             cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence                 223344455666666666666543 23332 34556666666666554 34444455555555555555433211


Q ss_pred             cccC----------------CCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCC
Q psy4257         157 KFGT----------------RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS  220 (419)
Q Consensus       157 ~~~~----------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  220 (419)
                      .-..                .......+..+..++.+.+..+...--...|..+..++.+.+..+.   +...+|..+.+
T Consensus       222 i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~  298 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSS  298 (394)
T ss_dssp             ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTT
T ss_pred             eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccc
Confidence            0000                0001123444555555555544322112334445555555544432   23345666777


Q ss_pred             CcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcc
Q psy4257         221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST  299 (419)
Q Consensus       221 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l  299 (419)
                      |+.+.+..+ +..+...+|.++.+|+.++|.++ ++.|+ .+|.++.+|+.+++..+ ++.|+...       +.++.+|
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-------F~~C~~L  368 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA-------FQGCINL  368 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT-------BTTCTTC
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH-------hhCCCCC
Confidence            777777644 66777777777777887777643 66665 45777777887777665 66666553       3446777


Q ss_pred             eeEEecCC
Q psy4257         300 LRIYLEGN  307 (419)
Q Consensus       300 ~~l~l~~N  307 (419)
                      +.+.+..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            77777543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=1.5e-14  Score=121.03  Aligned_cols=109  Identities=21%  Similarity=0.234  Sum_probs=96.4

Q ss_pred             cccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcC
Q psy4257         173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSH  252 (419)
Q Consensus       173 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  252 (419)
                      ..+.|++++|.++.+|..+  ..+|++|+|++|.|+++.+..|.++++|++|+|++|+|+.++...|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3567888888888887655  37899999999999999999999999999999999999999998899999999999999


Q ss_pred             CcccccCc-cCCCCCCcCEEecCCCcccccch
Q psy4257         253 NSLTRLDK-DFHGLPVLCKADLAHNNIKAINI  283 (419)
Q Consensus       253 N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~  283 (419)
                      |+|+.++. .|..+++|+.|+|++|.+.....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999985 58899999999999999986543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=1.8e-13  Score=130.60  Aligned_cols=278  Identities=15%  Similarity=0.214  Sum_probs=197.4

Q ss_pred             CCCCCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeeccccc------------------
Q psy4257           1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNR------------------   60 (419)
Q Consensus         1 ~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~------------------   60 (419)
                      ++.+|+.+.+.. .++.+. ..|..|.+|+.++|.++ ++.|+. .|.++.+|+.+.+..+-                  
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence            467899999974 477775 46777999999999754 666644 57788888877665331                  


Q ss_pred             ---ccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc-----
Q psy4257          61 ---ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ-----  130 (419)
Q Consensus        61 ---i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~-----  130 (419)
                         +..+ ..+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+. ..|..+..|+.+.+..+.     
T Consensus       147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~  224 (394)
T 4fs7_A          147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGD  224 (394)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT
T ss_pred             CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeeh
Confidence               1112 246788899999999754 56788888999999999988765 55443 345566666665554432     


Q ss_pred             ----------------ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCC
Q psy4257         131 ----------------LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI  194 (419)
Q Consensus       131 ----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l  194 (419)
                                      +..+....|..+..|+.+.+..+... +.     ...+..+..++.+.+....+.  ...+..+
T Consensus       225 ~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~-----~~~F~~~~~l~~~~~~~~~i~--~~~F~~~  296 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IG-----GSLFYNCSGLKKVIYGSVIVP--EKTFYGC  296 (394)
T ss_dssp             TTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-EC-----SCTTTTCTTCCEEEECSSEEC--TTTTTTC
T ss_pred             hhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-ee-----ccccccccccceeccCceeec--ccccccc
Confidence                            12223345566667777777655332 22     235677788888877765433  2467788


Q ss_pred             CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEec
Q psy4257         195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADL  273 (419)
Q Consensus       195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L  273 (419)
                      .+|+.+.+..+ +..+...+|.++.+|+.++|.. .++.+...+|.++.+|+.+.+..+ ++.|+ .+|.+|.+|+.+++
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            99999999765 8888889999999999999975 488999999999999999999877 88887 57999999999999


Q ss_pred             CCCcccccchhhhhhcccceecCCcceeE
Q psy4257         274 AHNNIKAINIQLALKTQCQIFGLNSTLRI  302 (419)
Q Consensus       274 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~l  302 (419)
                      ..+ ++.+..        .+.++.+|+.+
T Consensus       374 p~~-~~~~~~--------~F~~c~~L~~I  393 (394)
T 4fs7_A          374 PKR-LEQYRY--------DFEDTTKFKWI  393 (394)
T ss_dssp             EGG-GGGGGG--------GBCTTCEEEEE
T ss_pred             CCC-CEEhhh--------eecCCCCCcEE
Confidence            754 443321        24445666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=6.6e-13  Score=126.70  Aligned_cols=287  Identities=14%  Similarity=0.176  Sum_probs=146.0

Q ss_pred             CcEEecccccccccc-cccccccccceeeccccc---CccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257           5 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQ---LEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN   78 (419)
Q Consensus         5 L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~---l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~   78 (419)
                      |+.+.+..+ ++.+. ..|..|.+|+.+.+..+.   ++.|.. .|..+.+|+.+.+.++ +..++ .+|.++.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            555555432 44443 344556666666665543   444432 3555666666555433 33343 4556666666666


Q ss_pred             cCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      +.. .+..+...+|.++..|+.+.+.++ +..|........+|+.+.+..+. .......|..+..+.......+.....
T Consensus       144 lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~  220 (394)
T 4gt6_A          144 IPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI  220 (394)
T ss_dssp             CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred             ccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcc-cccccchhhhccccceecccccccccc
Confidence            643 345555566666666666666543 44443322223456666655432 233444555666666655544433222


Q ss_pred             cCCCCCCC--------cccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCC
Q psy4257         159 GTRNEGKN--------QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN  229 (419)
Q Consensus       159 ~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  229 (419)
                      ........        .+.....+..+.+.. .+..+ ..+|.++..|+.+.+..+ +..+...+|.++..|+.+.+. +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~  297 (394)
T 4gt6_A          221 DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-S  297 (394)
T ss_dssp             SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-T
T ss_pred             cceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-C
Confidence            11000000        000111122222211 11122 134556666666666543 334555666666677776664 4


Q ss_pred             cCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257         230 LLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP  308 (419)
Q Consensus       230 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np  308 (419)
                      .+..+...+|.++.+|+.+.|.++ ++.|. .+|.+|.+|+.+.|..+ ++.|....+       .++.+|+.+++.++.
T Consensus       298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF-------~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF-------SNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG-------TTCTTCCEEEESSCH
T ss_pred             cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh-------hCCCCCCEEEECCce
Confidence            566666666666667777766643 55554 45666677777766433 566655433       345666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=7.1e-16  Score=132.69  Aligned_cols=122  Identities=24%  Similarity=0.340  Sum_probs=106.9

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|++++|.++.++ .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++ .+..+++|+.|++++
T Consensus        47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred             CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence            678999999999999988 788899999999999999999988888899999999999999998 588899999999999


Q ss_pred             CCCcccCh-hhhcCCCCCCEEEccCCcCccccc-----------cccCCccCcEEe
Q psy4257          82 NQITMVRR-DEFQNLHNLDSISLQNNQITSMNS-----------SLSGLTKLAYLY  125 (419)
Q Consensus        82 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~-----------~l~~l~~L~~L~  125 (419)
                      |++..+.. ..+..+++|++|++++|.+.....           .+..+++|+.|+
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99998765 678999999999999999875522           255566666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=7.8e-14  Score=117.12  Aligned_cols=102  Identities=27%  Similarity=0.485  Sum_probs=51.8

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ  107 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  107 (419)
                      +.+++++|+++.+|..+.  .+|+.|+|++|.|.++ +..|.++++|+.|+|++|+|.++++..|.++++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555554432  4455555555555554 3344555555555555555555554445555555555555555


Q ss_pred             Ccccccc-ccCCccCcEEeccccccc
Q psy4257         108 ITSMNSS-LSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus       108 l~~i~~~-l~~l~~L~~L~l~~n~l~  132 (419)
                      |+.++.. |..+++|++|+|++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            5544432 444555555555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.47  E-value=4.1e-12  Score=121.20  Aligned_cols=284  Identities=14%  Similarity=0.196  Sum_probs=194.1

Q ss_pred             CCCCCcEEeccccc---ccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCC
Q psy4257           1 GLTDLNWLFLNNNR---LKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKL   74 (419)
Q Consensus         1 ~l~~L~~L~l~~n~---l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L   74 (419)
                      ++.+|+.+.+..+.   ++.+. ..|..+.+|+.+.+.++ ++.+.. .|..+.+|+.+.+..+ +..+ ..+|.++..|
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L  162 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSL  162 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccccc
Confidence            46789999998875   66665 45677999999888654 666654 5889999999999754 4445 4678899999


Q ss_pred             CEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhh-------------cC
Q psy4257          75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-------------RG  141 (419)
Q Consensus        75 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------------~~  141 (419)
                      +.+.+..+ +..+...+|.+ ..|+.+.+..+-..--...+..+.++.......+.........+             ..
T Consensus       163 ~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T 4gt6_A          163 HTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS  240 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred             ccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence            99999764 78888888875 57999988765333223567777778777665544332111111             11


Q ss_pred             CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCC
Q psy4257         142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL  221 (419)
Q Consensus       142 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  221 (419)
                      ...+..+.+.. .+..+.     ...|..+..|+.+.+..+...--..+|.++..|+.+.+. +.+..+...+|.++.+|
T Consensus       241 ~~~~~~~~ip~-~v~~i~-----~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L  313 (394)
T 4gt6_A          241 QREDPAFKIPN-GVARIE-----THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL  313 (394)
T ss_dssp             TCCCSEEECCT-TEEEEC-----TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC
T ss_pred             ccccceEEcCC-cceEcc-----cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCc
Confidence            22233333322 222222     236778888999988766443223677888899999996 56778888899999999


Q ss_pred             cEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcce
Q psy4257         222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL  300 (419)
Q Consensus       222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~  300 (419)
                      +.++|..+ ++.+...+|.++.+|+.+.+..+ ++.|+ .+|.+|.+|+.+++.++....   .       .+.....|+
T Consensus       314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~-------~~~~~~~L~  381 (394)
T 4gt6_A          314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N-------AISTDSGLQ  381 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H-------TCBCCCCC-
T ss_pred             CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h-------hhhccCCCC
Confidence            99999754 88888889999999999999754 77776 568999999999998875431   1       233456677


Q ss_pred             eEEecCC
Q psy4257         301 RIYLEGN  307 (419)
Q Consensus       301 ~l~l~~N  307 (419)
                      .+.+..|
T Consensus       382 ~i~i~~~  388 (394)
T 4gt6_A          382 NLPVAPG  388 (394)
T ss_dssp             -------
T ss_pred             EEEeCCC
Confidence            7776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=1.5e-14  Score=136.55  Aligned_cols=162  Identities=22%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             CCCCEEecCCCCCcccChhhhcCC-----CCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhh-----
Q psy4257          72 TKLQVFNMDFNQITMVRRDEFQNL-----HNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDI-----  139 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----  139 (419)
                      +.|+.|++++|.+.......|..+     .+|++|+|++|.|+..  ......+++|+.|+|++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            567777777777766544443322     5677777777766532  1122334456666666666654433333     


Q ss_pred             cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC----cccC
Q psy4257         140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS----PDDF  215 (419)
Q Consensus       140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~  215 (419)
                      ...++|+.|+|++|.|......                        .++..+..+++|++|+|++|.|+...    ...+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~------------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVA------------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL  207 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHH------------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred             hcCCccceeeCCCCCCChHHHH------------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence            2345556666665555432110                        12233445555666666666654322    2334


Q ss_pred             CCCCCCcEEEccCCcCcccCchh----ccCCCCCceEeCcCCcccc
Q psy4257         216 IGLDSLKMLDISHNLLTTLEETS----KTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       216 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~  257 (419)
                      ...++|++|+|++|.|++.....    +...++|++|+|++|.|..
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            44556666666666665433222    2234566666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=1.1e-14  Score=137.32  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=86.1

Q ss_pred             ccccceeecccccCc----cCccccccccccceeecccccccCch-----hhhc-CCCCCCEEecCCCCCcccChhhh-c
Q psy4257          25 LSKLQLLVIEQNQLE----ALPSDIQLFSQLGSLYANNNRITSLD-----GLLR-GLTKLQVFNMDFNQITMVRRDEF-Q   93 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~----~i~~~~~~~~~L~~L~l~~n~i~~l~-----~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~   93 (419)
                      ++..+.+++.+|-..    .++.  ..+..|+.|++++|.|....     ..+. ...+|+.|+|++|.+.......+ .
T Consensus        46 ~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  123 (372)
T 3un9_A           46 LPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP  123 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH
T ss_pred             CChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH
Confidence            444555666555322    1222  23467888888888887532     2333 23688889999888876544333 2


Q ss_pred             CCCCCCEEEccCCcCcccc-----ccc-cCCccCcEEecccccccccC----hhhhcCCCCccEEEcCCCCCccc
Q psy4257          94 NLHNLDSISLQNNQITSMN-----SSL-SGLTKLAYLYLSHNQLTEFL----LDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        94 ~~~~L~~L~L~~n~l~~i~-----~~l-~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      .+.+|+.|+|++|.|+...     ..+ ...++|+.|+|++|.++...    ...+..+++|++|+|++|.|...
T Consensus       124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~  198 (372)
T 3un9_A          124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE  198 (372)
T ss_dssp             HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred             HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence            3567889999998887432     222 34678999999999887543    33446788899999999988754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=4.7e-12  Score=118.62  Aligned_cols=103  Identities=25%  Similarity=0.290  Sum_probs=65.2

Q ss_pred             eeecccc-cCccCccccccccccceeeccc-ccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          30 LLVIEQN-QLEALPSDIQLFSQLGSLYANN-NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        30 ~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~-n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      .++++++ .++.||. +..+.+|+.|+|++ |.|..++ ..|.++++|+.|+|++|+|.++.+..|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3566665 6666666 66666666666664 6666664 45666667777777777777666666666667777777777


Q ss_pred             cCccccccccCCccCcEEecccccccc
Q psy4257         107 QITSMNSSLSGLTKLAYLYLSHNQLTE  133 (419)
Q Consensus       107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~  133 (419)
                      +|+.+|..+.....|+.|+|.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            666665433222236666666666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=2e-10  Score=108.82  Aligned_cols=264  Identities=14%  Similarity=0.196  Sum_probs=149.4

Q ss_pred             ccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          23 GTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        23 ~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      ....+|+.+.+.. .++.|++ +|.++.+|+.+++..+ ++.|+ .+|.++ +|+.+.+.. .+..+...+|.++ +|+.
T Consensus        43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~  117 (379)
T 4h09_A           43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDD  117 (379)
T ss_dssp             GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSE
T ss_pred             ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cccc
Confidence            3356677777753 4666654 5777888888888644 66664 566665 566666653 4666767777665 6777


Q ss_pred             EEccCCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC-------------------
Q psy4257         101 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT-------------------  160 (419)
Q Consensus       101 L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------  160 (419)
                      +.+..+ +..+.. .|.. .+|+.+.+..+ +..+....|..+.+++.+.+..+.......                   
T Consensus       118 i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK  194 (379)
T ss_dssp             EECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred             ccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence            777653 333322 2222 24444444322 233333445555555555544332111000                   


Q ss_pred             -----------CCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccC
Q psy4257         161 -----------RNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH  228 (419)
Q Consensus       161 -----------~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  228 (419)
                                 .......+....+|+.+.+..+ +..+ ..++.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus       195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~  272 (379)
T 4h09_A          195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA  272 (379)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred             cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence                       0001112334455566655443 2222 244566667777777654 5666666777777777777754


Q ss_pred             CcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257         229 NLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE  305 (419)
Q Consensus       229 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~  305 (419)
                       .+..+...+|.++.+|+.+.+.++.++.|+ .+|.++.+|+.++|..+ ++.|....+       .++.+|+.+.+.
T Consensus       273 -~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF-------~~C~~L~~i~ip  341 (379)
T 4h09_A          273 -KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF-------KNCKALSTISYP  341 (379)
T ss_dssp             -CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-------TTCTTCCCCCCC
T ss_pred             -cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh-------hCCCCCCEEEEC
Confidence             366666667777777777777777777765 45777777777777543 666665533       235556555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=2.8e-10  Score=107.77  Aligned_cols=266  Identities=14%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             CCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257           4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD   80 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~   80 (419)
                      +|+.+.+.. .++.++ ..|..|.+|+.++|..+ ++.|.. +|.++ +|+.+.+..+ +..|. .+|.++ +|+.+.+.
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp  121 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFP  121 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECC
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCC
Confidence            566666653 356665 45777889999998644 677754 46665 5777766543 55554 345443 67777776


Q ss_pred             CCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc-----------------------------
Q psy4257          81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ-----------------------------  130 (419)
Q Consensus        81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~-----------------------------  130 (419)
                      .+ +..+...+|.++ +|+.+.+-.+ ++.+. ..+..+.+++.+.+..+.                             
T Consensus       122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE  198 (379)
T ss_dssp             TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred             Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence            53 444444455444 3444433322 22221 223333333333322211                             


Q ss_pred             ------ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcC
Q psy4257         131 ------LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS  203 (419)
Q Consensus       131 ------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls  203 (419)
                            ........+....+|+.+.+..+ +..+.     ...+..+..|+.+.+..+ ++.+. .+|.++.+|+.+.+.
T Consensus       199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~-----~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~  271 (379)
T 4h09_A          199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLG-----DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY  271 (379)
T ss_dssp             EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEEC-----TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccccceeEEeecccccccccceeeeccc-eeEEc-----cccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence                  11223345555667777777544 33332     235777889999999776 55564 567788899999996


Q ss_pred             CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccc
Q psy4257         204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~  282 (419)
                      . .+..+...+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|.++ ++.|+ .+|.+|.+|+.+.+..+ ++.|.
T Consensus       272 ~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~  348 (379)
T 4h09_A          272 A-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE  348 (379)
T ss_dssp             C-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             c-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence            5 477787889999999999999999999999999999999999999765 78887 57999999999999654 77777


Q ss_pred             hhhhh
Q psy4257         283 IQLAL  287 (419)
Q Consensus       283 ~~~~~  287 (419)
                      ...+.
T Consensus       349 ~~aF~  353 (379)
T 4h09_A          349 SGAFE  353 (379)
T ss_dssp             TTTTT
T ss_pred             hhHhh
Confidence            66543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.18  E-value=8.8e-11  Score=92.92  Aligned_cols=86  Identities=19%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             eEeCcCCccc--ccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHh
Q psy4257         247 ELFVSHNSLT--RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET  324 (419)
Q Consensus       247 ~L~L~~N~i~--~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~  324 (419)
                      .++.++++++  .+|..+  -.+|+.|+|++|+|+.++...+.       .+++|+.|+|.+|||.|||.+.||..|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~-------~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~   82 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLD-------ALPALRTAHLGANPWRCDCRLVPLRAWLAG   82 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGG-------GCTTCCEEECCSSCCBCSGGGHHHHHHHHT
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhh-------hccccCEEEecCCCeeccCccHHHHHHHHh
Confidence            5667777776  666432  23577888888888888776543       478899999999999999999999999987


Q ss_pred             hcCCceeccccCCCCCCC
Q psy4257         325 INNNTKIHGETICQPDSN  342 (419)
Q Consensus       325 ~~~~~~~~~~~~c~~~~~  342 (419)
                      ..... ......|..+..
T Consensus        83 ~~~~~-~~~~~~C~~P~~   99 (130)
T 3rfe_A           83 RPERA-PYRDLRCVAPPA   99 (130)
T ss_dssp             SSCSG-GGTTCBCCBSTT
T ss_pred             Ccccc-cccCcEeCcChH
Confidence            54322 245567865543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=6e-11  Score=111.01  Aligned_cols=110  Identities=13%  Similarity=0.136  Sum_probs=67.7

Q ss_pred             cccccccceeecccccc----------cCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-c
Q psy4257          45 IQLFSQLGSLYANNNRI----------TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-S  113 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n~i----------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~  113 (419)
                      +..+++|+.|.+.+...          ..+...+..+++|+.|++++|.-..+.+  +. +++|++|+|..+.+..-. .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence            45566777777754422          1355667788889999988873122222  33 778999999888776321 2


Q ss_pred             cc--cCCccCcEEeccc--cccccc-----Chhhh--cCCCCccEEEcCCCCCcc
Q psy4257         114 SL--SGLTKLAYLYLSH--NQLTEF-----LLDDI--RGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       114 ~l--~~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~  157 (419)
                      .+  ..+++|+.|+|+.  |...+.     ....+  ..+++|+.|++++|.+..
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence            22  3678888888753  221111     11122  247899999999888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=4.9e-10  Score=104.81  Aligned_cols=101  Identities=11%  Similarity=0.067  Sum_probs=62.0

Q ss_pred             ccceeecccccccC---------chhhhcCCCCCCEEecCCCCCcc---------cChhhhcCCCCCCEEEccCCcCccc
Q psy4257          50 QLGSLYANNNRITS---------LDGLLRGLTKLQVFNMDFNQITM---------VRRDEFQNLHNLDSISLQNNQITSM  111 (419)
Q Consensus        50 ~L~~L~l~~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~i  111 (419)
                      .++.|.+....+.+         +..+...+++|+.|.+.......         -....+..+++|+.|.|++|.-..+
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l  187 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI  187 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence            45566666444331         22234556788888886543211         1234556778899999988732234


Q ss_pred             cccccCCccCcEEecccccccccChhhhc--CCCCccEEEcCC
Q psy4257         112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIR--GLKRLRTVDLSY  152 (419)
Q Consensus       112 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~  152 (419)
                      +. + .+++|+.|+|..+.+.......+.  .+++|+.|+|+.
T Consensus       188 ~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          188 GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            33 3 367888888888877654444443  678888888753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=2e-09  Score=91.01  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             cccccccceeecccc-cccC-----chhhhcCCCCCCEEecCCCCCcccCh----hhhcCCCCCCEEEccCCcCcc----
Q psy4257          45 IQLFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS----  110 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~----  110 (419)
                      +...+.|++|+|++| .|..     +...+...++|++|+|++|.|.....    ..+.....|++|+|++|.|..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            445556666666666 5553     33445556667777777776654332    233444667777777776663    


Q ss_pred             -ccccccCCccCcEEec--ccccccccC----hhhhcCCCCccEEEcCCCCCcc
Q psy4257         111 -MNSSLSGLTKLAYLYL--SHNQLTEFL----LDDIRGLKRLRTVDLSYNKINK  157 (419)
Q Consensus       111 -i~~~l~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~  157 (419)
                       +...+...++|++|+|  ++|.+....    ...+...+.|+.|+|++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             3455666667777777  667776542    2344455777888887777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.78  E-value=3e-09  Score=89.86  Aligned_cols=114  Identities=13%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             cccccccccceeecccc-cCcc-----CccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccC
Q psy4257          20 GQLGTLSKLQLLVIEQN-QLEA-----LPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVR   88 (419)
Q Consensus        20 ~~~~~~~~L~~L~L~~n-~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~   88 (419)
                      ..+...+.|+.|+|++| .|..     +...+...++|++|+|++|.|..     +...+...+.|+.|+|++|.|....
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34555889999999999 8872     44456778899999999999875     4456777789999999999998754


Q ss_pred             ----hhhhcCCCCCCEEEc--cCCcCcc-----ccccccCCccCcEEecccccccc
Q psy4257          89 ----RDEFQNLHNLDSISL--QNNQITS-----MNSSLSGLTKLAYLYLSHNQLTE  133 (419)
Q Consensus        89 ----~~~~~~~~~L~~L~L--~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~  133 (419)
                          ..++.....|++|+|  ++|.|..     +...+...++|++|+|++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                345667789999999  8899884     44566777899999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=6.8e-08  Score=85.79  Aligned_cols=103  Identities=20%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             ccccccce--eecccccccCchh----hhcCCCCCCEEecCCCCCcccCh--hhhcCCCCCCEEEccCCcCccccccccC
Q psy4257          46 QLFSQLGS--LYANNNRITSLDG----LLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSG  117 (419)
Q Consensus        46 ~~~~~L~~--L~l~~n~i~~l~~----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~i~~~l~~  117 (419)
                      ...+.|+.  ++++.|....++.    ....+++|+.|+|++|+|.++..  ..+..+++|+.|+|++|+|..+ ..+..
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~  216 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK  216 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence            33344444  5556664443332    22456778888888888777543  4556777888888888877766 22333


Q ss_pred             Cc--cCcEEecccccccccCh-------hhhcCCCCccEEE
Q psy4257         118 LT--KLAYLYLSHNQLTEFLL-------DDIRGLKRLRTVD  149 (419)
Q Consensus       118 l~--~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~  149 (419)
                      +.  +|++|+|++|.+.+..+       ..+..+++|+.||
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            33  77777777777765322       2345566666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=1e-07  Score=84.58  Aligned_cols=101  Identities=22%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             ccccce--eecccccCccCccc----cccccccceeecccccccCch---hhhcCCCCCCEEecCCCCCcccC-hhhhcC
Q psy4257          25 LSKLQL--LVIEQNQLEALPSD----IQLFSQLGSLYANNNRITSLD---GLLRGLTKLQVFNMDFNQITMVR-RDEFQN   94 (419)
Q Consensus        25 ~~~L~~--L~L~~n~l~~i~~~----~~~~~~L~~L~l~~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~   94 (419)
                      .+.|+.  ++++.|....++..    ...+++|+.|+|++|.|.+++   ..+..+++|+.|+|++|+|.++. ...+..
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~  219 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG  219 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence            445554  66666654433322    256789999999999999865   56678999999999999999872 233444


Q ss_pred             CCCCCEEEccCCcCcc-cc-------ccccCCccCcEEec
Q psy4257          95 LHNLDSISLQNNQITS-MN-------SSLSGLTKLAYLYL  126 (419)
Q Consensus        95 ~~~L~~L~L~~n~l~~-i~-------~~l~~l~~L~~L~l  126 (419)
                      + +|++|+|++|.+.. +|       ..+..+++|+.||-
T Consensus       220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            4 99999999999873 32       34678899998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=1.1e-06  Score=72.43  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCcccc-ccccCC----ccCcEEeccccc-ccccChhhhcCCCC
Q psy4257          72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMN-SSLSGL----TKLAYLYLSHNQ-LTEFLLDDIRGLKR  144 (419)
Q Consensus        72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~-~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~  144 (419)
                      .+|+.|++++|.|+......+.++++|++|+|++| .|+.-. ..+..+    ++|++|+|++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35666666666666555555666666666666666 354210 222322    356666666663 55544455556666


Q ss_pred             ccEEEcCCCC
Q psy4257         145 LRTVDLSYNK  154 (419)
Q Consensus       145 L~~L~l~~n~  154 (419)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.2e-06  Score=72.19  Aligned_cols=86  Identities=14%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCc-CcccCchhccCC----CCCceEeCcCCc-ccccC-ccCCCCCC
Q psy4257         195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFL----PALEELFVSHNS-LTRLD-KDFHGLPV  267 (419)
Q Consensus       195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-i~~l~-~~~~~l~~  267 (419)
                      ..|+.||++++.|+......+.++++|++|+|++|. |++.....++.+    ++|++|+|++|. |+.-. ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777766655666777777777777774 665444444433    357777777763 55421 23445666


Q ss_pred             cCEEecCCCc-ccc
Q psy4257         268 LCKADLAHNN-IKA  280 (419)
Q Consensus       268 L~~L~L~~N~-l~~  280 (419)
                      |++|+|+++. ++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            6666666653 443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.95  E-value=1.2e-05  Score=67.53  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             ccccccceeecccc-cCc-----cCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccChh-
Q psy4257          23 GTLSKLQLLVIEQN-QLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRRD-   90 (419)
Q Consensus        23 ~~~~~L~~L~L~~n-~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~-   90 (419)
                      ..-+.|+.|+|++| .|.     .+.+.+.....|+.|+|++|.|..     |..++.....|+.|+|++|.|...... 
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34678999999885 776     244557777889999999998884     556777788999999999999865543 


Q ss_pred             ---hhcCCCCCCEEEccCC---cCc-----cccccccCCccCcEEeccccccc
Q psy4257          91 ---EFQNLHNLDSISLQNN---QIT-----SMNSSLSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus        91 ---~~~~~~~L~~L~L~~n---~l~-----~i~~~l~~l~~L~~L~l~~n~l~  132 (419)
                         ++.....|++|+|++|   .+.     .|...+..-+.|+.|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               4455667999999865   444     23456677788999999877653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.92  E-value=7e-06  Score=68.97  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=85.4

Q ss_pred             cccccccceeecccc-cccC-----chhhhcCCCCCCEEecCCCCCcccChhh----hcCCCCCCEEEccCCcCcc----
Q psy4257          45 IQLFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRRDE----FQNLHNLDSISLQNNQITS----  110 (419)
Q Consensus        45 ~~~~~~L~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~~----  110 (419)
                      +.....|++|+|++| .|..     +-.++.....|+.|+|++|+|......+    +.....|++|+|++|.|..    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            456678999999985 7764     4567788889999999999998665443    4466899999999999983    


Q ss_pred             -ccccccCCccCcEEecccc---ccccc----ChhhhcCCCCccEEEcCCCCCc
Q psy4257         111 -MNSSLSGLTKLAYLYLSHN---QLTEF----LLDDIRGLKRLRTVDLSYNKIN  156 (419)
Q Consensus       111 -i~~~l~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~l~  156 (419)
                       |.+.+..-..|++|+|++|   .+...    +...+..-+.|+.|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             4466777788999999865   33322    3345566688999999887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.0002  Score=56.05  Aligned_cols=54  Identities=26%  Similarity=0.288  Sum_probs=27.0

Q ss_pred             EEEcCCCCCC--CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcc
Q psy4257         199 RLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL  255 (419)
Q Consensus       199 ~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  255 (419)
                      .++.+++.++  .+ |..+.  .+|+.|+|++|+|+.++...|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554  33 22222  2455555555555555555555555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.31  E-value=1.1  Score=32.73  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257         204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      +..++.|...+|.+|.+|+.+.|-.+ ++.|...+|.++.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34556666667777777777777653 56666667777777777766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 3e-20
 Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 11/279 (3%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             LE +P D+        L   NN+IT + DG  + L  L    +  N+I+ +    F  
Sbjct: 20  LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
           L  L+ + L  NQ+  +   +    +   L +  N++T+       GL ++  V+L  N 
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
           +   G  N      QG+  +  +++    I  +   L     L+ L L  NK+  +    
Sbjct: 136 LKSSGIEN---GAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAAS 190

Query: 215 FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLA 274
             GL++L  L +S N ++ ++  S    P L EL +++N L ++         +    L 
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313
           +NNI AI                S   + L  NPV   +
Sbjct: 251 NNNISAIG-SNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.6 bits (200), Expect = 6e-18
 Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 19/251 (7%)

Query: 1   GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
            L +L+ L L NN++  +  G    L KL+ L + +NQL+ LP  +    Q   L  + N
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHEN 110

Query: 60  RITSLDGLLRGLTKLQVF---NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
            IT +   +       +      +  + + +    FQ +  L  I + +  IT++   L 
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 169

Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
               L  L+L  N++T+     ++GL  L  + LS+N I+     +          ++  
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG------LDSLKMLDISHNL 230
            KL                 +  + L +N +  I  +DF          S   + +  N 
Sbjct: 229 NKLVKVPGGL-----ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

Query: 231 LTTLEETSKTF 241
           +   E    TF
Sbjct: 284 VQYWEIQPSTF 294

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 1e-13
 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 18/201 (8%)

Query: 53  SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
           SL A NN+I+ +  L   LT L   +++ NQ+  +      +L NL  + L NNQI+++ 
Sbjct: 201 SLIATNNQISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL- 256

Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
           + LSGLTKL  L L  NQ++   +  + GL  L  ++L+ N++          + +  + 
Sbjct: 257 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI-------SPISNLK 307

Query: 173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
           N+  L L  N I ++   +  +  L RL  ++NK+          L ++  L   HN ++
Sbjct: 308 NLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQIS 364

Query: 233 TLEETSKTFLPALEELFVSHN 253
            L   +   L  + +L ++  
Sbjct: 365 DLTPLAN--LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 3e-13
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            LT+L  L L NN++ +L   L  L+KL  L +  NQ+  +     L +        N  
Sbjct: 239 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
                     L  L    + FN I+ +      +L  L  +   NN+++ + SSL+ LT 
Sbjct: 298 EDISPI--SNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDV-SSLANLTN 352

Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           + +L   HNQ+++  L  +  L R+  + L+  
Sbjct: 353 INWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 65/342 (19%), Positives = 119/342 (34%), Gaps = 80/342 (23%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
           L  +  L  +   +KS++G +  L+ L  +    NQL  +         L  L       
Sbjct: 43  LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNN 97

Query: 62  TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----------- 110
             +  +        +  +      +   D  +NL NL+ + L +N I+            
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 111 -------------------------------MNSSLSGLTKLAYLYLSHNQLTEFLLDDI 139
                                            S L+ LT L  L  ++NQ+++  +  +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPL 215

Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
             L  L  + L+ N++   GT       +  +TN+ +L L +N+I NL   L G+  L+ 
Sbjct: 216 GILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLANNQISNL-APLSGLTKLTE 267

Query: 200 LDLSHNKLRTISP--------------------DDFIGLDSLKMLDISHNLLTTLEETSK 239
           L L  N++  ISP                         L +L  L +  N ++ +   S 
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
             L  L+ LF ++N ++ +      L  +      HN I  +
Sbjct: 328 --LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 19/267 (7%)

Query: 25  LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
           L++    V+ +  +    S   L  Q+ +L A+   I S+DG +  L  L   N   NQ+
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL 78

Query: 85  TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
           T +     +NL  L  I + NNQI  +    +          ++       L ++  L R
Sbjct: 79  TDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM----------GI 194
           L     + + I+        +    G        L +                      +
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254
             L  L  ++N++  I+P   +   +L  L ++ N L  +   +   L  L +L +++N 
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQ 252

Query: 255 LTRLDKDFHGLPVLCKADLAHNNIKAI 281
           ++ L     GL  L +  L  N I  I
Sbjct: 253 ISNLA-PLSGLTKLTELKLGANQISNI 278

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 8e-13
 Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 18/275 (6%)

Query: 91  EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
           E   + +   ++     +T++   L        L+LS N L  F L  +    RL  ++L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
              ++ K             +  +  L L HN++++L      +  L+ LD+S N+L ++
Sbjct: 63  DRAELTKL-------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLC 269
                 GL  L+ L +  N L TL     T  P LE+L +++N+LT L     +GL  L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 270 KADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT 329
              L  N++  I            FG +     +L GNP LC+  +      ++    N 
Sbjct: 176 TLLLQENSLYTI--------PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227

Query: 330 KIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTS 364
            +  + +          +     +        P  
Sbjct: 228 YVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGK 262

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 10/195 (5%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
             L ALP D+        L+ + N + +     L   T+L   N+D  ++T         
Sbjct: 20  RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGT 75

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
           L  L ++ L +NQ+ S+      L  L  L +S N+LT   L  +RGL  L+ + L  N+
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
           +                         +N  E   G L G+  L  L L  N L TI P  
Sbjct: 136 LKTLPPGLLTPTP----KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKG 190

Query: 215 FIGLDSLKMLDISHN 229
           F G   L    +  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%)

Query: 57  NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL 115
           +   +T+L   L +  T L   ++  N +             L  ++L   ++T +    
Sbjct: 18  DKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73

Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
                   L +               L       L+   ++     +     ++G+  + 
Sbjct: 74  ------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 176 ELKLQHNEIENLDGALMGIHGLSRL-DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
           EL L+ NE++ L   L+          L++N L  +      GL++L  L +  N L T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 235 EETSKTFLPALEELFVSHNSL 255
            +        L   F+  N  
Sbjct: 188 PKGF-FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 20/77 (25%), Positives = 32/77 (41%)

Query: 55  YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS 114
              N   T   GLL    KL+  ++  N +T +       L NLD++ LQ N + ++   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 115 LSGLTKLAYLYLSHNQL 131
             G   L + +L  N  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 25/249 (10%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
           + S     + ++   +   ++   ++L  N+++       R  + L  + L  N + +  
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
                   +    ++ +     +        L     L  L L    L+ + P  F GL 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGL---GRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
           +L+ L +  N L  L + +   L  L  LF+  N ++ + +  F GL  L +  L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 279 KAI------------------NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVID 320
             +                  N   AL     +  L +   + L  NP +CD   R +  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 321 AMETINNNT 329
            ++    ++
Sbjct: 249 WLQKFRGSS 257

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 12/236 (5%)

Query: 3   TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
                +FL+ NR+  +          L +L +  N L  + +       L      ++  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 62  TS---LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
                      GL +L   ++D   +  +    F+ L  L  + LQ+N + ++ + +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
           L  L +L+L  N+++       RGL  L  + L  N++                  +F  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-- 209

Query: 178 KLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
               N +  L    +  +  L  L L+ N               L+    S + + 
Sbjct: 210 ---ANNLSALPTEALAPLRALQYLRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 9/154 (5%)

Query: 5   LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNN 59
           L +L+L +N L++L +     L  L  L +  N++ ++P     F  L SL       N 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNR 188

Query: 60  RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
                    R L +L    +  N ++ +  +    L  L  + L +N       +     
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 120 KLAYLYLSHNQLTEFLLDDIRG--LKRLRTVDLS 151
            L     S +++   L   + G  LKRL   DL 
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
            L+L+H  LT   L  +  L  +  +DLS+N++            +  +  +  L+   N
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN 53

Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLE---ETS 238
            +EN+DG          L L +N+L+  +     +    L +L++  N L   E   E  
Sbjct: 54  ALENVDGVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 239 KTFLPALEELF 249
              LP++  + 
Sbjct: 113 AEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 29  QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 88
           ++L +    L  L   ++    +  L  ++NR+ +L   L  L  L+V     N +  V 
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 58

Query: 89  RDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTE 133
            D   NL  L  + L NN++        L    +L  L L  N L +
Sbjct: 59  -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
            L  +  L L++NRL++L   L  L  L++L    N LE +        +L  L   NNR
Sbjct: 18  QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN-LPRLQELLLCNNR 76

Query: 61  ITSLDGL--LRGLTKLQVFNMDFNQITM---VRRDEFQNLHNLDSI 101
           +     +  L    +L + N+  N +     ++    + L ++ SI
Sbjct: 77  LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 8   LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
           L L +  L  L   L  L  +  L +  N+L ALP  +     L  L A++N + ++DG+
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 68  LRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
                +LQ   +  N++          +   L  ++LQ N +         L ++
Sbjct: 62  ANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
              L  L ++NN+L  L      L +L       N L  +P    L   L  L+   N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIA---SFNHLAEVPE---LPQNLKQLHVEYNPL 336

Query: 62  TSLDGLLRGLTKLQVFN 78
                +   +  L++ +
Sbjct: 337 REFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 77  FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
                N  +   R       +L+ +++ NN++  + +    L +   L  S N L E   
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEV-- 319

Query: 137 DDIRGLKRLRTVDLSYNKINKF 158
                 + L+ + + YN + +F
Sbjct: 320 --PELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS 251
                L  L++S+NKL  +          L+ L  S N L  + E        L++L V 
Sbjct: 281 DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVE 332

Query: 252 HNSLTRLDKDFHGLPVL 268
           +N L         +  L
Sbjct: 333 YNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 45/290 (15%), Positives = 84/290 (28%), Gaps = 17/290 (5%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
              L  L  + N L  L     +L  L +       L  LP  ++      +       +
Sbjct: 57  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 116

Query: 62  TSL--------DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 113
            +         D            +++F      + +E   L NL  ++       S+  
Sbjct: 117 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 176

Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
                  L  +   +N L E                 +L     +   +      +   +
Sbjct: 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 236

Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
           T++ EL      ++  +    G+  L       N              SL+ L++S+N L
Sbjct: 237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 296

Query: 232 TTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
             L        P LE L  S N L  + +    L  L    + +N ++  
Sbjct: 297 IELPA----LPPRLERLIASFNHLAEVPELPQNLKQL---HVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
           NE ++      ++ EL + +N++  L         L RL  S N L  +         +L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL----PQNL 326

Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVS 251
           K L + +N L    +       ++E+L ++
Sbjct: 327 KQLHVEYNPLREFPD----IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 48  FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
              L  L  +NN++  L  L   L +L      FN +  V     +   NL  + ++ N 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP----ELPQNLKQLHVEYNP 335

Query: 108 ITSMNSSLSGLTKL 121
           +         +  L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 6   NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 65
             L+  N     +         L+ L +  N+L  LP+   L  +L  L A+ N +  + 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVP 320

Query: 66  GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
            L + L +L   ++++N +     D  +++ +L
Sbjct: 321 ELPQNLKQL---HVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 54/293 (18%), Positives = 90/293 (30%), Gaps = 24/293 (8%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
              +L    LNN  L SL      L  L       N L  LP    L   L SL  +NN 
Sbjct: 39  QAHELE---LNNLGLSSLPELPPHLESLVA---SCNSLTELPE---LPQSLKSLLVDNNN 89

Query: 61  ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT- 119
           + +L  L   L  L V N    ++  ++   F  + ++D+ SL+       +        
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 120 -----KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
                      L          + ++ L  L     S    N           +  +T I
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI------SH 228
           +        + +L  +L  ++          +L        +  +    L          
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
           N  +    +     P+LEEL VS+N L  L      L  L     + N++  +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEV 319

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 1   GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
               L  L  + N L  +      L +L +   E N L   P    +   +  L  N+
Sbjct: 302 LPPRLERLIASFNHLAEVPELPQNLKQLHV---EYNPLREFPD---IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 37/147 (25%)

Query: 77  FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
                  + +             ++   N     + S       L  L +S+N+L E   
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-- 299

Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG 196
                  RL  +  S+N +                  + EL                   
Sbjct: 300 --PALPPRLERLIASFNHL----------------AEVPEL----------------PQN 325

Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKM 223
           L +L + +N LR   PD    ++ L+M
Sbjct: 326 LKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK 279
               L++++  L++L E      P LE L  S NSLT L +       L    + +NN+K
Sbjct: 39  QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQS---LKSLLVDNNNLK 91

Query: 280 AIN 282
           A++
Sbjct: 92  ALS 94

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 2/138 (1%)

Query: 88  RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
           +  ++ N      + L+  +I  + +  + L +   +  S N++    LD    L+RL+T
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
           + ++ N+I + G   +          +    L      +   +L  +  L  L       
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 208 RTISPDDFIGLDSLKMLD 225
           +         +  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
           KL    IE              LDL   K+  I  +    LD    +D S N +  L+  
Sbjct: 2   KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 238 SK 239
             
Sbjct: 60  PL 61

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 21  QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD 80
           Q     + + L +   ++  + +      Q  ++  ++N I  LDG    L +L+   ++
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVN 71

Query: 81  FNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSH---NQLTEFL 135
            N+I  +     Q L +L  + L NN +        L+ L  L YL +          + 
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 136 LDDIRGLKRLRTVDLS 151
           L  I  + ++R +D  
Sbjct: 132 LYVIYKVPQVRVLDFQ 147

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 7e-07
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 97  NLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDL 150
           ++ S+ +Q  +++       L  L +   + L    LTE     +   +R    L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
             N++   G     +        I +L LQ+ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 9e-06
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 111 MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
                   + L  L+L+   ++      L   +     LR +DLS N +   G     ++
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 211
             Q    + +L L                 L  L+     LR IS
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEE-----MEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 74  LQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLS 127
           +Q  ++   +++  R  E    L     + L +  +T      ++S+L     LA L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 128 HNQLTEFLLDDI-RGLK----RLRTVDLSYN 153
            N+L +  +  + +GL+    +++ + L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 92  FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLK-- 143
            Q    L  + L +  ++     S+ ++L     L  L LS+N L +  +  +   ++  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 144 --RLRTVDLSYNKINK 157
              L  + L     ++
Sbjct: 425 GCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 173 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI----GLDSLKMLDI 226
           +I  L +Q  E+        L  +     + L    L      D         +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
             N L   +      L  L+        + +L 
Sbjct: 63  RSNELG--DVGVHCVLQGLQT---PSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 30/115 (26%)

Query: 121 LAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
           +  L +   +L++    ++   L++ + V L    + +                      
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-------------------- 43

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHN 229
                +++  AL     L+ L+L  N+L       +          ++ L + + 
Sbjct: 44  ----CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 35/225 (15%), Positives = 61/225 (27%), Gaps = 6/225 (2%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
           +++  +PSD+        L     ++  +  G   G   L+   +  N +  V   +  +
Sbjct: 18  SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75

Query: 95  LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
                           +  +      L  L       T                 L   +
Sbjct: 76  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 135

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG-LSRLDLSHNKLRTISPD 213
            N      E  + V        L L  N I+ +                 +N L  +  D
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
            F G     +LDIS   + +L       L  L     S  +L +L
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 8/232 (3%)

Query: 53  SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
                 +++T +   L R   +L        ++ ++++  F    +L+ I +  N +  +
Sbjct: 12  VFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-GTRNEGKNQVQG 170
             +           +   +    L  +    + L  +              +  K     
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
              +      +      +  +        L L+ N ++ I    F G    ++    +N 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
           L  L             L +S   +  L       L  L        N+K +
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 15/214 (7%)

Query: 25  LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
           L+    +   ++ +    +   L   + +L A    +T+++G+ + L  L    +  NQI
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGV-QYLNNLIGLELKDNQI 75

Query: 85  TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
           T +   +         +S    +  S  + L  +  L         +T         +  
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 145 LRTVDLSYNKI----------NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI 194
           L    ++              +    +      +  ++ +  LK   N+I ++   L  +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASL 194

Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
             L  + L +N++  +SP       +L ++ +++
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 16/216 (7%)

Query: 70  GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
            L          + +T        +L  + ++S     +T++   +  L  L  L L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN 73

Query: 130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ--------- 180
           Q+T+              +  +  K        +    +   +                 
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 181 -HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
            + ++  +          +   LS    +         L  L  L    N ++ +   + 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
             LP L E+ + +N ++ +         L    L +
Sbjct: 194 --LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 14/198 (7%)

Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
            L N   I+   + +T    + + L  +  L      +T   ++ ++ L  L  ++L  N
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
           +I             +   +   LK             + +      D++     +    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 214 DFIGLDSLKMLDI----------SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH 263
            ++ L+ +  +            S       + T    L  L  L    N ++ +     
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLA 192

Query: 264 GLPVLCKADLAHNNIKAI 281
            LP L +  L +N I  +
Sbjct: 193 SLPNLIEVHLKNNQISDV 210

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-------------- 47
           L  ++ +  NN+ +KS++G +  L  +  L +  N+L  +     L              
Sbjct: 45  LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 48  ---FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104
                +      + +   +    + GL  L      +     +      +          
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163

Query: 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
            +   S    L+GLTKL  LYLS N +++  L  + GLK L  ++L 
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 70  GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
              +    N+    +T         L+++D I   N+ I S+   +  L  +  L+L+ N
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN 78

Query: 130 QLT----------EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
           +LT             L       +  +      K+      + G + + G+ ++ +L+ 
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
            +     +    +         LS    +        GL  L+ L +S N ++ L   + 
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198

Query: 240 TFLPALEELFVS 251
             L  L+ L + 
Sbjct: 199 --LKNLDVLELF 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 2   LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
             D +   L+   L+S    L   +   +L    +    L    +   +L SL  +NNR+
Sbjct: 19  RYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 62  TSLDGL---LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
             LD +   ++    L++ N+  N++   R  +      L+ + L  N ++      S 
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
            Q+E L   +           +   + S   L        V N   +    +R    +N+
Sbjct: 7   EQVEQLKLIMSKRYDGSQQALDLKGLRSDPDL-VAQNIDVVLNRRSSMAATLR-IIEENI 64

Query: 96  HNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
             L S++L NN++  ++     +     L  L LS N+L      D     +L  + L  
Sbjct: 65  PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124

Query: 153 NKI 155
           N +
Sbjct: 125 NSL 127

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTT 233
            L  + +    L      I  L  L+LS+N+L  +           +LK+L++S N L +
Sbjct: 46  VLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105

Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKD 261
             E  K     LEEL++  NSL+   +D
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
           L+  Q+  +   +S     +   L    L      D+        ++   +         
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMAATL---- 57

Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL---DLSHNKLRTISPDDFIGLD 219
             +   + +  +  L L +N +  LD     +     L   +LS N+L++    D I   
Sbjct: 58  --RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115

Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
            L+ L +  N L+       T++ A+ E F     L RLD
Sbjct: 116 KLEELWLDGNSLSDTFRDQSTYISAIRERF---PKLLRLD 152

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 45/259 (17%), Positives = 88/259 (33%), Gaps = 15/259 (5%)

Query: 5   LNWLFLNNNRLK---SLEGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQLGSLYANNN 59
           +N L L+   L     +   L  L  L    +    N +  +P  I   +QL  LY  + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 60  RITSLDGLLRG-LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSG 117
            ++         +  L   +  +N ++        +L NL  I+   N+I+ ++  S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
            +KL              +        L  VDLS N +    +   G ++     ++ + 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEE 236
            L  +  +      +        DL +N++    P     L  L  L++S N L   + +
Sbjct: 232 SLAFDLGKVGLSKNLNGL-----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 237 TSKTFLPALEELFVSHNSL 255
                L   +    ++N  
Sbjct: 287 GGN--LQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 39/261 (14%), Positives = 79/261 (30%), Gaps = 8/261 (3%)

Query: 20  GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL--GSLYANNNRITSLDGLLRGLTKLQVF 77
            Q   ++ L L  +   +   +PS +     L    +   NN +  +   +  LT+L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 78  NMDFNQITMVRRDEFQNLHNL-DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
            +    ++    D    +  L       N    ++  S+S L  L  +    N+++  + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG 196
           D      +L T        N+   +         +  +   +       ++     G   
Sbjct: 167 DSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDK 221

Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
            ++                    +L  LD+ +N +        T L  L  L VS N+L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 257 RLDKDFHGLPVLCKADLAHNN 277
                   L     +  A+N 
Sbjct: 282 GEIPQGGNLQRFDVSAYANNK 302

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN-LLTTLEETSKTFLPALEELFVS-H 252
           HG S L  + +           G ++L  L I +   L  LE      L  L  L +   
Sbjct: 8   HGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 253 NSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
                    FH  P L + +L+ N ++++          +     S   + L GNP+ C 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESL--------SWKTVQGLSLQELVLSGNPLHCS 118

Query: 313 DSMRAVIDAMET 324
            ++R +    E 
Sbjct: 119 CALRWLQRWEEE 130

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 96  HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNK 154
           H    +    +        L G   L  LY+ + Q L    L D+RGL  LR + +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR-TISPD 213
           +          +       +  L L  N +E+L    +    L  L LS N L  + +  
Sbjct: 68  LR-----FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

Query: 214 DFIGLDSLKMLDISHNLLT 232
                +   +  +    L 
Sbjct: 123 WLQRWEEEGLGGVPEQKLQ 141

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 33/257 (12%), Positives = 85/257 (33%), Gaps = 9/257 (3%)

Query: 10  LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT--SLDGL 67
           L    L            +      ++ ++   ++     ++  +  +N+ I   +L G+
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 68  LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS------LQNNQITSMNSSLSGLTKL 121
           L   +KLQ  +++  +++    +      NL  ++           + ++ SS S L +L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
              +          +      + +  ++LS  + N   +      +        +L    
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 182 NEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
               +       ++ L  L LS    +   +  +   + +LK L +   +     +  K 
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

Query: 241 FLPALEELFVSHNSLTR 257
            LP L+       ++ R
Sbjct: 247 ALPHLQINCSHFTTIAR 263

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
            +      I  M+++LS L    +L LS N + +  +  + G++ LR + L  N I K  
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKI- 85

Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GL 218
                   +  V +  E              +  +  L  L +S+NK+      D +  L
Sbjct: 86  ------ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
           D L+ L ++ N L    + +        E+     +L +LD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 9/180 (5%)

Query: 36  NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
             L+ +P DI L +    L  N     S DGL   L  L    +  NQ+T +  + F+  
Sbjct: 18  RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 96  HNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
            ++  + L  N+I    N    GL +L  L L  NQ++  +      L  L +       
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS------L 131

Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
                  N   +       + +  L         GA   +  +   DL H++ +  S + 
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARC--GAPSKVRDVQIKDLPHSEFKCSSENS 189

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 13/165 (7%)

Query: 94  NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
           +L  + ++      I S+   +  L  L  +  S+NQLT+              ++ +  
Sbjct: 38  DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 96

Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI--- 210
                         +    N          + NL+   +  + +S +             
Sbjct: 97  ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 156

Query: 211 -------SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
                         L +L+ LDIS N ++ +   +K  L  LE L
Sbjct: 157 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK--LTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 17/200 (8%)

Query: 25  LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
           L++    V+ +  +    S   L  Q+ +L A+   I S+DG +  L  L   N   NQ 
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ- 73

Query: 85  TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
            +      +NL  L  I + NNQI  +    +          ++       L ++  L R
Sbjct: 74  -LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 204
           L     + + I+        +        + +LK            L  +  L RLD+S 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-----------PLANLTTLERLDISS 181

Query: 205 NKLRTISPDDFIGLDSLKML 224
           NK+  IS      L +L+ L
Sbjct: 182 NKVSDISV--LAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.79

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.1e-31  Score=238.12  Aligned_cols=218  Identities=25%  Similarity=0.302  Sum_probs=184.7

Q ss_pred             cCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcc
Q psy4257          93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT  172 (419)
Q Consensus        93 ~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  172 (419)
                      .+...+..++.+++.++.||..+.  +++++|+|++|.++++.+..|..+++|++|+|++|+|+.++.       +..++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~~l~   77 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLP   77 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCT
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-------ccccc
Confidence            345566667777778887776553  467888888888887777778888888888888888876642       34577


Q ss_pred             cccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcC
Q psy4257         173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSH  252 (419)
Q Consensus       173 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  252 (419)
                      +|+.|+|++|++..++..+..+++|+.|++++|.+.++.+..+..+.+++.|++++|.+..++...+..+++|+.|++++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc
Confidence            88888888888888887888899999999999999999888899999999999999999999998899999999999999


Q ss_pred             CcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcC
Q psy4257         253 NSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINN  327 (419)
Q Consensus       253 N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~  327 (419)
                      |+|+.++ ..|..+++|++|+|++|+|+.++..++        .+.+|+.|+|+||||.|||.+.||..|++....
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~--------~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~~  225 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--------GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE  225 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred             ccccccCccccccccccceeecccCCCcccChhHC--------CCCCCCEEEecCCCCCCCcchHHHHHHHHhccc
Confidence            9999987 458889999999999999999987654        378899999999999999999999999987433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.8e-30  Score=237.99  Aligned_cols=276  Identities=23%  Similarity=0.320  Sum_probs=237.5

Q ss_pred             ccceeecccccCccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN  105 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  105 (419)
                      .++.++.+++.++++|..+.  +++++|+|++|+|+.++. .|.++++|+.|++++|.+..+.+..|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            56778888889999988764  679999999999999874 789999999999999999999999999999999999999


Q ss_pred             CcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                      |+++.+|..+  ...+..|++.+|.+.++....+.....+..+++..|.......   ....+..+++|+.+++.+|.+.
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~---~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB---CTTGGGGCTTCCEEECCSSCCC
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC---CccccccccccCccccccCCcc
Confidence            9999997654  3588999999999999888888888889999998886654332   2235677889999999999999


Q ss_pred             CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCC
Q psy4257         186 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL  265 (419)
Q Consensus       186 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l  265 (419)
                      .++..+  +++|+.|++++|.+....+..|.+++.+++|++++|.+.+++...+..+++|++|+|++|+|+.+|.+|..+
T Consensus       164 ~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l  241 (305)
T d1xkua_         164 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH  241 (305)
T ss_dssp             SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred             ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            887543  678999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257         266 PVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD  312 (419)
Q Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  312 (419)
                      ++|++|+|++|+|+.++...+.... ......+++.++++||||.+.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~-~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPG-YNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSS-CCTTSCCCSEEECCSSSSCGG
T ss_pred             cCCCEEECCCCccCccChhhccCcc-hhcccCCCCEEECCCCcCccC
Confidence            9999999999999999876553211 223467889999999999763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.9e-30  Score=231.59  Aligned_cols=245  Identities=24%  Similarity=0.339  Sum_probs=181.8

Q ss_pred             eecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecc-cccc
Q psy4257          54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLS-HNQL  131 (419)
Q Consensus        54 L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~-~n~l  131 (419)
                      +++++++++.+|..+.  ..+++|+|++|+|+.+++.+|.++++|++|++++|++..++ ..+..+..++.+.+. .+.+
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4455555666654332  45677777777777777777777777777777777777664 344555666666543 4456


Q ss_pred             cccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC
Q psy4257         132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS  211 (419)
Q Consensus       132 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~  211 (419)
                      ..+.+..|.++++|++|++++|.+..+..                            ..+....+|+.+++++|.++++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------------~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------------GLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccchhhcccccCCEEecCCcccccccc----------------------------cccchhcccchhhhccccccccC
Confidence            66666667777777777777776654321                            23455677888888888888887


Q ss_pred             cccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcc
Q psy4257         212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQ  290 (419)
Q Consensus       212 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  290 (419)
                      +..|..+.+|++|++++|++..+++.+|.++++|+++++++|++..++ ..|..+++|++|++++|++..++...+.   
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~---  222 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA---  222 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT---
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccc---
Confidence            788888888899999999888888888888889999999999888864 6788889999999999999988887653   


Q ss_pred             cceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCC
Q psy4257         291 CQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQ  338 (419)
Q Consensus       291 ~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~  338 (419)
                          .+++|++|++++|||.|+|.+.|+..|++....   ......|.
T Consensus       223 ----~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~---~~~~~~C~  263 (284)
T d1ozna_         223 ----PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG---SSSEVPCS  263 (284)
T ss_dssp             ----TCTTCCEEECCSSCEECSGGGHHHHHHHHHCCS---EECCCBEE
T ss_pred             ----cccccCEEEecCCCCCCCccchHHHHHHHhCcC---CCCceEeC
Confidence                478899999999999999999999999998433   23445664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.5e-29  Score=239.16  Aligned_cols=278  Identities=28%  Similarity=0.419  Sum_probs=211.7

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +.+|++|+++++.|++++ .+..+++|++|+|++|+|+.++ .++.+++|++|++++|.|..++. +..+++|+.|++++
T Consensus        43 l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCc-cccCCcccccccccccccccccc-cccccccccccccc
Confidence            467999999999999885 4778999999999999999986 48999999999999999999875 78999999999998


Q ss_pred             CCCcccCh---------------------------------------------------------------hhhcCCCCC
Q psy4257          82 NQITMVRR---------------------------------------------------------------DEFQNLHNL   98 (419)
Q Consensus        82 n~l~~~~~---------------------------------------------------------------~~~~~~~~L   98 (419)
                      +.+.++..                                                               ..+..++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            87764322                                                               123445666


Q ss_pred             CEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257          99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK  178 (419)
Q Consensus        99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  178 (419)
                      +.+++++|.++.++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.++.       .+..+++|+.|+
T Consensus       200 ~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~  269 (384)
T d2omza2         200 ESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELK  269 (384)
T ss_dssp             SEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGTTCTTCSEEE
T ss_pred             ceeeccCCccCCCC-cccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC-------cccccccCCEee
Confidence            67777777766653 244556777777777777654  35666777777777777776543       245567777777


Q ss_pred             cCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257         179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL  258 (419)
Q Consensus       179 l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l  258 (419)
                      ++++.+..++. +..+..++.+++++|.+.++  ..+..+.+++.|++++|+++++.+  +..+++|++|++++|+|+.+
T Consensus       270 l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         270 LGANQISNISP-LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ccCcccCCCCc-cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC
Confidence            77777776653 55667777777777777665  246677888888888888888753  66688888888888888887


Q ss_pred             CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCC
Q psy4257         259 DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN  307 (419)
Q Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~N  307 (419)
                      + .+..+++|++|++++|+|+++++         +.++++|+.|++++|
T Consensus       345 ~-~l~~l~~L~~L~l~~N~l~~l~~---------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 S-SLANLTNINWLSAGHNQISDLTP---------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCBCGG---------GTTCTTCSEEECCCE
T ss_pred             h-hHcCCCCCCEEECCCCcCCCChh---------hccCCCCCEeeCCCC
Confidence            6 57888888888888888888764         224778888888877

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.4e-27  Score=225.57  Aligned_cols=255  Identities=28%  Similarity=0.438  Sum_probs=222.0

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCch----------------
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD----------------   65 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~----------------   65 (419)
                      |++|++|++++|.|+.++. +..+++|++|++++|.+..++ .++.+++|+.|+++++.+..+.                
T Consensus        65 L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          65 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999999875 888999999999999999885 4889999999999987765421                


Q ss_pred             ------------------------------------------------hhhcCCCCCCEEecCCCCCcccChhhhcCCCC
Q psy4257          66 ------------------------------------------------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN   97 (419)
Q Consensus        66 ------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~   97 (419)
                                                                      ..+..+++++.+++++|.+.++.+  +..+.+
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~  220 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTN  220 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCC
Confidence                                                            123456788999999999998854  567889


Q ss_pred             CCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257          98 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL  177 (419)
Q Consensus        98 L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  177 (419)
                      |+.|++++|+++.++ .+..+++|+.|++++|.+.+..  .+..+++|+.|+++++++..+.       .+..+..++.+
T Consensus       221 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~-------~~~~~~~l~~l  290 (384)
T d2omza2         221 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS-------PLAGLTALTNL  290 (384)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-------GGTTCTTCSEE
T ss_pred             CCEEECCCCCCCCcc-hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC-------ccccccccccc
Confidence            999999999999884 6788999999999999998864  4888999999999999998664       35678889999


Q ss_pred             EcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       178 ~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      .+.+|.+..++ .+..+.+++.|++++|+++++.  .+..+++|++|++++|+|++++  .+..+++|++|++++|+|++
T Consensus       291 ~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         291 ELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             ECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCB
T ss_pred             ccccccccccc-ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCC
Confidence            99999998875 4778899999999999999874  3788999999999999999876  47889999999999999999


Q ss_pred             cCccCCCCCCcCEEecCCC
Q psy4257         258 LDKDFHGLPVLCKADLAHN  276 (419)
Q Consensus       258 l~~~~~~l~~L~~L~L~~N  276 (419)
                      ++. +.++++|+.|+|++|
T Consensus       366 l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG-GTTCTTCSEEECCCE
T ss_pred             Chh-hccCCCCCEeeCCCC
Confidence            874 899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=4.8e-27  Score=214.96  Aligned_cols=263  Identities=19%  Similarity=0.321  Sum_probs=225.4

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~   81 (419)
                      .++.++.++..++++|..++  +++++|+|++|+|+.++. .|..+++|++|++++|.+..+ +..|.++++|+.|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            35788999999999998775  689999999999999986 699999999999999999998 56799999999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccc--ccChhhhcCCCCccEEEcCCCCCccc
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLT--EFLLDDIRGLKRLRTVDLSYNKINKF  158 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (419)
                      |+++.++..   ....++.|.+.+|.+..++. .+.....+..+++..|...  ......+..+++|+.+++++|.+..+
T Consensus        89 n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 NQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            999998654   34588999999999998853 4667778888888887543  33456788899999999999998876


Q ss_pred             cCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257         159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  237 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  237 (419)
                      +..        .+++|+.|++++|.+... +..+..++.+++|++++|.+.++.+.+|.++++|++|+|++|+|+.++. 
T Consensus       166 ~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-  236 (305)
T d1xkua_         166 PQG--------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-  236 (305)
T ss_dssp             CSS--------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred             Ccc--------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-
Confidence            432        357899999999988765 4678889999999999999999999999999999999999999999865 


Q ss_pred             hccCCCCCceEeCcCCcccccCc-c------CCCCCCcCEEecCCCcccc
Q psy4257         238 SKTFLPALEELFVSHNSLTRLDK-D------FHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       238 ~~~~l~~L~~L~L~~N~i~~l~~-~------~~~l~~L~~L~L~~N~l~~  280 (419)
                      .+..+++|++|+|++|+|+.|+. .      +..+.+|+.|+|++|.++.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            67889999999999999999873 2      3456889999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=8.1e-28  Score=221.01  Aligned_cols=248  Identities=18%  Similarity=0.217  Sum_probs=201.8

Q ss_pred             cccceeecccccCc---cCccccccccccceeeccc-cccc-CchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257          26 SKLQLLVIEQNQLE---ALPSDIQLFSQLGSLYANN-NRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS  100 (419)
Q Consensus        26 ~~L~~L~L~~n~l~---~i~~~~~~~~~L~~L~l~~-n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  100 (419)
                      .+++.|+|+++.+.   .+|..++++++|++|+|++ |.+. .+|..|.++++|++|++++|++.++.+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            36888999998887   4788889999999999986 6777 58888889999999999999999988888888999999


Q ss_pred             EEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCc-cEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257         101 ISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL-RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK  178 (419)
Q Consensus       101 L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~  178 (419)
                      +++++|.+. .+|..+..+++|+.+++++|.+.+..+..+..+..+ +.+++++|++.+....     .+..+. ...++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~-----~~~~l~-~~~l~  203 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-----TFANLN-LAFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-----GGGGCC-CSEEE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccc-----cccccc-ccccc
Confidence            999988766 557788888999999999999888777778777665 7888899888765432     333333 34688


Q ss_pred             cCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         179 LQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       179 l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                      +.++... .++..+..+.+++.+++++|.+.+. +..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+|++
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            8877655 4566677889999999999999876 4468888999999999999997666678889999999999999995


Q ss_pred             -cCccCCCCCCcCEEecCCCc-cccc
Q psy4257         258 -LDKDFHGLPVLCKADLAHNN-IKAI  281 (419)
Q Consensus       258 -l~~~~~~l~~L~~L~L~~N~-l~~~  281 (419)
                       +| .+..+.+|+.+++++|+ +.+.
T Consensus       283 ~iP-~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         283 EIP-QGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECC-CSTTGGGSCGGGTCSSSEEEST
T ss_pred             cCC-CcccCCCCCHHHhCCCccccCC
Confidence             66 46788899999999997 4444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.8e-27  Score=218.69  Aligned_cols=250  Identities=17%  Similarity=0.172  Sum_probs=205.5

Q ss_pred             cccceeecccccccC---chhhhcCCCCCCEEecCC-CCCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcE
Q psy4257          49 SQLGSLYANNNRITS---LDGLLRGLTKLQVFNMDF-NQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAY  123 (419)
Q Consensus        49 ~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~  123 (419)
                      .+++.|+|+++.+.+   +|..+..+++|++|+|++ |++.+..|..|+++++|++|+|++|++..+ +..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999998885   678899999999999986 788877788899999999999999999876 456788899999


Q ss_pred             EecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCccc-ccEEEcCCCCCcCch-hhhcCCCCCcEEE
Q psy4257         124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN-IFELKLQHNEIENLD-GALMGIHGLSRLD  201 (419)
Q Consensus       124 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~-~~~~~l~~L~~L~  201 (419)
                      +++++|.+.+..+..+..++.|+.+++++|.+.+..+.     .+..+.. ++.+++++|++.... ..+..+ .+..++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~-----~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~  203 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-----SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-----GGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccc-----cccccccccccccccccccccccccccccc-cccccc
Confidence            99999999888888999999999999999988754322     3444445 488999999887553 444444 455799


Q ss_pred             cCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc-ccCccCCCCCCcCEEecCCCcccc
Q psy4257         202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNIKA  280 (419)
Q Consensus       202 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~l~~~~~~l~~L~~L~L~~N~l~~  280 (419)
                      ++++.+.+..+..+..+.+++.+++++|.+....+ .+..+++|+.|+|++|+++ .+|..|..+++|++|+|++|+|++
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            99998888888888899999999999999887654 4677899999999999998 588889999999999999999984


Q ss_pred             -cchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         281 -INIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                       +|..         ..+.+|..+++.||+..|+..
T Consensus       283 ~iP~~---------~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         283 EIPQG---------GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ECCCS---------TTGGGSCGGGTCSSSEEESTT
T ss_pred             cCCCc---------ccCCCCCHHHhCCCccccCCC
Confidence             5421         236778888999999888754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=210.32  Aligned_cols=220  Identities=26%  Similarity=0.365  Sum_probs=145.2

Q ss_pred             eeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc-CCc
Q psy4257          30 LLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQ  107 (419)
Q Consensus        30 ~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~-~n~  107 (419)
                      .++.++++++.+|..+.  +.+++|+|++|+|+.++ ..|.++++|++|++++|++..+....+.++..++.+... .+.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45667777777776553  56788888888888876 467888888888888888888888888888888887764 456


Q ss_pred             Cccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         108 ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       108 l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      +..+ +..|.++++|++|++++|.+.......+....+|+.+++++|.++.++..     .++.+.+|+.|++++|.+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~-----~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-----TFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCE
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChh-----HhccccchhhcccccCcccc
Confidence            7766 45678888888888888888777777777778888888888887765432     33444444445555444444


Q ss_pred             ch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257         187 LD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT  256 (419)
Q Consensus       187 ~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  256 (419)
                      ++ .+|.++++|+++++++|++.++.+..|.++++|++|++++|.+.+++...|..+++|++|+|++|.+.
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            42 33444555555555555555555555555555555555555555555555555555555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-26  Score=202.51  Aligned_cols=201  Identities=25%  Similarity=0.292  Sum_probs=152.2

Q ss_pred             cccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEec
Q psy4257          47 LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL  126 (419)
Q Consensus        47 ~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l  126 (419)
                      ....+.+++++++.++.||..+.  +++++|+|++|+|+++++.+|.++++|++|+|++|+|+.++ .+..+++|++|+|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEEC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-ccccccccccccc
Confidence            34445555666666666664332  46777777777777777777777788888888888777774 3456777777777


Q ss_pred             ccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCC
Q psy4257         127 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK  206 (419)
Q Consensus       127 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~  206 (419)
                      ++|++... +..+..+++|+.|++++|.+..+..                            ..+..+.++++|++++|.
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----------------------------~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL----------------------------GALRGLGELQELYLKGNE  135 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS----------------------------STTTTCTTCCEEECTTSC
T ss_pred             cccccccc-ccccccccccccccccccccceeec----------------------------cccccccccccccccccc
Confidence            77777653 3456666777777777766654322                            234567778888888888


Q ss_pred             CCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccc
Q psy4257         207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK  279 (419)
Q Consensus       207 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~  279 (419)
                      +..+.+..+..+++|+.|++++|+++.++...|..+++|++|+|++|+|+.+|+++..+++|+.|+|++|.+.
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            8888888888888999999999999998888888899999999999999999988888999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.88  E-value=2.4e-21  Score=179.85  Aligned_cols=185  Identities=25%  Similarity=0.299  Sum_probs=126.5

Q ss_pred             CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257           4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ   83 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~   83 (419)
                      +|++|+|+++.++.+|..   .++|++|+|++|+|+.+|..+   .+|+.|++.+|.+..++..   .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            688999999999998853   568999999999999998654   5799999999999887642   2469999999999


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257          84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE  163 (419)
Q Consensus        84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  163 (419)
                      +..++.  ++.+.+|++|+++++.+...+...   ..+..+.+.++....  ...+..++.++.+++++|.+........
T Consensus       110 l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         110 LEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccc--hhhhccceeecccccccccccccc---ccccchhhccccccc--cccccccccceecccccccccccccccc
Confidence            998853  678899999999999887664332   345555555544432  2344556666777776665544321100


Q ss_pred             -------------CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCC
Q psy4257         164 -------------GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL  207 (419)
Q Consensus       164 -------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l  207 (419)
                                   .......++.|+.+++++|....++..   ..++..+.+.++.+
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~---~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL  236 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence                         011234566777888887776655432   23344455555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=5.3e-22  Score=173.02  Aligned_cols=208  Identities=20%  Similarity=0.341  Sum_probs=130.8

Q ss_pred             ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      +.++..+++++++++++ ..+..+.+|+.|++.+|.|+.++ .+.++++|+.|++++|++.++.+  |.++++|+.++++
T Consensus        18 l~~~~~~~l~~~~~~d~-~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHHHHHHhCCCCcCCc-CCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            34445566666666654 24456677777777777777775 36777777777777777776643  6777777777777


Q ss_pred             CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI  184 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  184 (419)
                      +|.++.++ .+..+++|+.++++++...+.  ..+...+.+..+.++++.+...                          
T Consensus        94 ~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--------------------------  144 (227)
T d1h6ua2          94 GNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--------------------------  144 (227)
T ss_dssp             SCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--------------------------
T ss_pred             cccccccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--------------------------
Confidence            77777663 456667777777777665543  2344455566666655554332                          


Q ss_pred             cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCC
Q psy4257         185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHG  264 (419)
Q Consensus       185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~  264 (419)
                         . .+..+++|+.|++++|.+....  .|.++++|++|+|++|++++++.  +..+++|++|+|++|+|++++ .+..
T Consensus       145 ---~-~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~-~l~~  215 (227)
T d1h6ua2         145 ---S-PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLAN  215 (227)
T ss_dssp             ---G-GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTT
T ss_pred             ---h-hhccccccccccccccccccch--hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCc-cccc
Confidence               1 2344555666666666665442  25566666666666666666542  455666666666666666665 3566


Q ss_pred             CCCcCEEecC
Q psy4257         265 LPVLCKADLA  274 (419)
Q Consensus       265 l~~L~~L~L~  274 (419)
                      +++|+.|+++
T Consensus       216 l~~L~~L~ls  225 (227)
T d1h6ua2         216 TSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEEEE
T ss_pred             CCCCCEEEee
Confidence            6667666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=3.7e-21  Score=167.62  Aligned_cols=203  Identities=22%  Similarity=0.398  Sum_probs=147.0

Q ss_pred             EEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcc
Q psy4257           7 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM   86 (419)
Q Consensus         7 ~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~   86 (419)
                      .++++.+.++++. .+..+.+|+.|++.+|.|+.+ .++.++++|++|++++|.+..+.. +..+++|+.+++++|.++.
T Consensus        23 ~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~   99 (227)
T d1h6ua2          23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (227)
T ss_dssp             HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc
Confidence            3456666666542 345588999999999999998 478999999999999999999875 8899999999999999987


Q ss_pred             cChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCC
Q psy4257          87 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN  166 (419)
Q Consensus        87 ~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  166 (419)
                      +  ..|.++++|+.+.++++.+..+ ..+...+.+..+.++++.+...  ..+..+++|+.|++++|.+....       
T Consensus       100 i--~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~-------  167 (227)
T d1h6ua2         100 V--SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT-------  167 (227)
T ss_dssp             C--GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-------
T ss_pred             c--cccccccccccccccccccccc-chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch-------
Confidence            7  3588999999999999988877 4467778999999999988764  34677888999999998876432       


Q ss_pred             cccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEcc
Q psy4257         167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS  227 (419)
Q Consensus       167 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  227 (419)
                      .+..+++|++|++++|++++++. +..+++|++|+|++|+++++.+  +.++++|++|+++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            23344455555555555544432 4444455555555555444421  4444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=2.2e-21  Score=164.33  Aligned_cols=155  Identities=22%  Similarity=0.232  Sum_probs=130.7

Q ss_pred             ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcC
Q psy4257         174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSH  252 (419)
Q Consensus       174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  252 (419)
                      .+.+++++++++.+|..+.  ..+++|+|++|+|++ +....|.++++|+.|+|++|.+..++...|..+++|++|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4578888888888886553  679999999999976 5677788999999999999999999999999999999999999


Q ss_pred             CcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCcee
Q psy4257         253 NSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKI  331 (419)
Q Consensus       253 N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~  331 (419)
                      |+|+.++ ..|.++++|++|+|++|+|+.++...+       ..++++++++|++|+|.|+|.+.|+..|++.....   
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f-------~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~---  157 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-------EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN---  157 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-------TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCS---
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHh-------cCCcccccccccccccccccchHHHhhhhhhhccc---
Confidence            9999987 468999999999999999999988754       34889999999999999999999999999874322   


Q ss_pred             ccccCCCCC
Q psy4257         332 HGETICQPD  340 (419)
Q Consensus       332 ~~~~~c~~~  340 (419)
                      .....|..+
T Consensus       158 ~~~~~c~~p  166 (192)
T d1w8aa_         158 GGAARCGAP  166 (192)
T ss_dssp             GGGCBBCSS
T ss_pred             CCCeEeCCC
Confidence            234456443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.7e-21  Score=169.27  Aligned_cols=213  Identities=18%  Similarity=0.257  Sum_probs=96.1

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcc-cChhhhcCCCCCCEEEccC-
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSISLQN-  105 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~-  105 (419)
                      +.++.++..++.+|..+.  .++++|++++|.|..++ ..|.++++|++|++++|.+.. +++.+|.++.+++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            455555555666654432  34555555555555554 245555555555555555433 3344455555555555432 


Q ss_pred             CcCcccc-ccccCCccCcEEecccccccccChh-hhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         106 NQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLD-DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       106 n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      |++..++ ..|..+++|+.|++++|.+...... .+..+..+..+...++.+..++.                       
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~-----------------------  145 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----------------------  145 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT-----------------------
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc-----------------------
Confidence            3343332 3344455555555555544432211 11222333333333333333321                       


Q ss_pred             CcCchhhhcCC-CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-c
Q psy4257         184 IENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-D  261 (419)
Q Consensus       184 l~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~  261 (419)
                           ..+.++ ..++.|++++|+++.+....|....-++.+++++|+++.++...|.++++|++|+|++|+|+.+|. .
T Consensus       146 -----~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         146 -----NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             -----TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             -----cccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence                 222222 234555555555555544433322222222344455555555555555555555555555555542 2


Q ss_pred             CCCCCCcCEE
Q psy4257         262 FHGLPVLCKA  271 (419)
Q Consensus       262 ~~~l~~L~~L  271 (419)
                      |..+++|+.+
T Consensus       221 ~~~l~~L~~l  230 (242)
T d1xwdc1         221 LENLKKLRAR  230 (242)
T ss_dssp             CTTCCEEESS
T ss_pred             HcCCcccccC
Confidence            4444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.1e-21  Score=167.87  Aligned_cols=216  Identities=18%  Similarity=0.244  Sum_probs=164.6

Q ss_pred             CcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccC-ch-hhhcCCCCCCEEecC-
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITS-LD-GLLRGLTKLQVFNMD-   80 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~-l~-~~~~~l~~L~~L~l~-   80 (419)
                      .+.++.++..++.+|+.++  .+++.|+|++|.|+.++. .|.++++|++|++++|.+.. ++ ..|.++++++.|.+. 
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            3678889999999987664  589999999999999976 58999999999999999876 43 578899999999876 


Q ss_pred             CCCCcccChhhhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccccccccChhhhcCCC-CccEEEcCCCCCcc
Q psy4257          81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLSYNKINK  157 (419)
Q Consensus        81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~  157 (419)
                      .|.+..+.+..|.++++|++|++++|.+..++.  .+..+..+..+...++.+..+....|.+++ .++.|++++|++..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            478999999999999999999999999987743  344556666666777777777666666553 56667777766665


Q ss_pred             ccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEE-EcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257         158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL-DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  236 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  236 (419)
                      +..                             ......++..+ ++++|+++.+.+..|.++++|++|+|++|+|+.++.
T Consensus       168 i~~-----------------------------~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         168 IHN-----------------------------CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             ECT-----------------------------TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             ccc-----------------------------ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence            432                             22233344333 456777777777777888888888888888888877


Q ss_pred             hhccCCCCCceEeCc
Q psy4257         237 TSKTFLPALEELFVS  251 (419)
Q Consensus       237 ~~~~~l~~L~~L~L~  251 (419)
                      ..|..+++|+.+++.
T Consensus       219 ~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         219 YGLENLKKLRARSTY  233 (242)
T ss_dssp             SSCTTCCEEESSSEE
T ss_pred             HHHcCCcccccCcCC
Confidence            777777777766554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.2e-19  Score=166.41  Aligned_cols=249  Identities=23%  Similarity=0.268  Sum_probs=179.8

Q ss_pred             cccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257          26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN  105 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  105 (419)
                      .+|++|+|+++.++.+|+.   .++|++|++++|+|+.+|..   +.+|+.|++++|+++.+..  +  .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh--h--ccccccccccc
Confidence            4799999999999999864   46899999999999999854   4689999999999987742  2  24699999999


Q ss_pred             CcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257         106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE  185 (419)
Q Consensus       106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  185 (419)
                      |.+..+|. +..+++|+.|++++|.+.....    ....+..+.+.++......       .+..+..++.+.+.+|.+.
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~-------~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP-------ELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-hhhhccceeecccccccccccc----ccccccchhhccccccccc-------cccccccceeccccccccc
Confidence            99999975 6789999999999999876432    3456778888776654332       3445566667777666544


Q ss_pred             Cch-------------------hhhcCCCCCcEEEcCCCCCCCcCcccCC-----------------CCCCCcEEEccCC
Q psy4257         186 NLD-------------------GALMGIHGLSRLDLSHNKLRTISPDDFI-----------------GLDSLKMLDISHN  229 (419)
Q Consensus       186 ~~~-------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------------~l~~L~~L~L~~n  229 (419)
                      .++                   ..+..++.|+.+++++|....+. ....                 ....+..+++..+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  254 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  254 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            321                   12345678999999998776542 1111                 1123444444444


Q ss_pred             cCcccCc----------------hhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccce
Q psy4257         230 LLTTLEE----------------TSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI  293 (419)
Q Consensus       230 ~l~~~~~----------------~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  293 (419)
                      .+..+..                .....+++|++|+|++|+|+.+|..   +++|+.|+|++|+|+.++..         
T Consensus       255 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---------  322 (353)
T d1jl5a_         255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---------  322 (353)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---------
T ss_pred             cccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---------
Confidence            3332211                0112357899999999999999853   57899999999999988742         


Q ss_pred             ecCCcceeEEecCCcccc
Q psy4257         294 FGLNSTLRIYLEGNPVLC  311 (419)
Q Consensus       294 ~~~~~l~~l~l~~Np~~c  311 (419)
                        +.+|++|++++|++..
T Consensus       323 --~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         323 --PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             --CTTCCEEECCSSCCSS
T ss_pred             --cCCCCEEECcCCcCCC
Confidence              5678999999999754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=3.8e-20  Score=157.54  Aligned_cols=181  Identities=31%  Similarity=0.446  Sum_probs=101.5

Q ss_pred             ccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN  106 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  106 (419)
                      ++..+.++++.++... ....+.+|++|++++|.|..+++ +..+++|++|++++|+++++.+  |+++++|++|++++|
T Consensus        19 ~~i~~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHHHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHHHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            3344455555555432 22344566666666666665543 4556666666666666655532  556666666666666


Q ss_pred             cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257         107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN  186 (419)
Q Consensus       107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  186 (419)
                      .+..++ .+.++++|+.|++++|.+...  ..+..+++|+.|++++|++                             ..
T Consensus        95 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l-----------------------------~~  142 (199)
T d2omxa2          95 QIADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI-----------------------------SD  142 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC-----------------------------CC
T ss_pred             cccccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhh-----------------------------cc
Confidence            655553 355555566666655555442  2344455555555555544                             33


Q ss_pred             chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceE
Q psy4257         187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL  248 (419)
Q Consensus       187 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  248 (419)
                      ++ .+..+++|+.|++++|+++++.  .|.++++|++|++++|++++++  .++.+++|+.|
T Consensus       143 ~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         143 IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             cc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            33 3455666666666666666652  3566667777777777766654  24556666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=3e-20  Score=159.53  Aligned_cols=183  Identities=25%  Similarity=0.370  Sum_probs=106.5

Q ss_pred             cceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc
Q psy4257          28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ  107 (419)
Q Consensus        28 L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  107 (419)
                      +....+.++.++... ....+.+|+.|++++|.+..+++ +..+++|+.|++++|+|+++.  .++++++|++|++++|+
T Consensus        26 ~i~~~l~~~~~~~~~-~~~~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHHHhCcCccCCcc-CHHHhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            333445555554321 11345566666777666666653 556666667777666666654  25566666666666666


Q ss_pred             CccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc
Q psy4257         108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL  187 (419)
Q Consensus       108 l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  187 (419)
                      |+.++ .+..+++|+.|++++|.+...  ..+..++.++.+++++|.+..                             +
T Consensus       102 i~~l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~-----------------------------~  149 (210)
T d1h6ta2         102 VKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-----------------------------I  149 (210)
T ss_dssp             CCCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-----------------------------C
T ss_pred             ccccc-ccccccccccccccccccccc--ccccccccccccccccccccc-----------------------------c
Confidence            66664 355566666666666665442  245555556666665555543                             2


Q ss_pred             hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCc
Q psy4257         188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS  251 (419)
Q Consensus       188 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  251 (419)
                      + .+..+++|+.+++++|+++++.  .+.++++|++|+|++|+|++++  .+..+++|++|+|+
T Consensus       150 ~-~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         150 T-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEE
T ss_pred             c-cccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEcc
Confidence            2 2344566666666666666552  2556666666666666666654  35566666666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.6e-19  Score=153.67  Aligned_cols=177  Identities=25%  Similarity=0.428  Sum_probs=147.4

Q ss_pred             EecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCccc
Q psy4257           8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV   87 (419)
Q Consensus         8 L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~   87 (419)
                      +.++.+.++... ....+.+|+.|++++|.++.+ ++++.+++|++|++++|+++.+++ +.++++|+.|++++|.+..+
T Consensus        23 ~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          23 TVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             HHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             HHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccc
Confidence            345555555432 123478899999999999988 468889999999999999999876 88999999999999998887


Q ss_pred             ChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCc
Q psy4257          88 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ  167 (419)
Q Consensus        88 ~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  167 (419)
                      .  .+.+++.|+.|++++|.+..+ ..+..+++|+.|++++|.+...  ..+..+++|+.|++.+|++.+++       .
T Consensus       100 ~--~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-------~  167 (199)
T d2omxa2         100 T--PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK-------P  167 (199)
T ss_dssp             G--GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-------G
T ss_pred             c--ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc-------c
Confidence            4  488999999999999988877 4578889999999999998764  36888999999999999998764       3


Q ss_pred             ccCcccccEEEcCCCCCcCchhhhcCCCCCcEE
Q psy4257         168 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRL  200 (419)
Q Consensus       168 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L  200 (419)
                      ++.+++|++|++++|++++++ .+..+++|+.|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            678899999999999999986 47788888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=9.9e-20  Score=156.29  Aligned_cols=166  Identities=28%  Similarity=0.496  Sum_probs=146.1

Q ss_pred             cccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEc
Q psy4257          24 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL  103 (419)
Q Consensus        24 ~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  103 (419)
                      .+.+|+.|++++|.++.++ ++..+++|++|++++|+|+.++. +..+++|+.|++++|+|+++.  .+.++++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc--ccccccccccccc
Confidence            3778999999999999885 58889999999999999999885 688999999999999999874  5889999999999


Q ss_pred             cCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257         104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE  183 (419)
Q Consensus       104 ~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  183 (419)
                      ++|.+..+ ..+..+++++.+++++|.+.+.  ..+..+++|+.+++++|++.++.       .+..+++|++|++++|.
T Consensus       120 ~~~~~~~~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-------~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSSC
T ss_pred             cccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccc-------cccCCCCCCEEECCCCC
Confidence            99999887 4678889999999999998864  35677899999999999998654       36778999999999999


Q ss_pred             CcCchhhhcCCCCCcEEEcCC
Q psy4257         184 IENLDGALMGIHGLSRLDLSH  204 (419)
Q Consensus       184 l~~~~~~~~~l~~L~~L~Ls~  204 (419)
                      ++.++ .+.++++|++|+|++
T Consensus       190 i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCh-hhcCCCCCCEEEccC
Confidence            99987 588999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=2.8e-20  Score=157.46  Aligned_cols=176  Identities=19%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             CEEEccCCcCccccccccCCccCcEEecccccccc-cChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257          99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE-FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL  177 (419)
Q Consensus        99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L  177 (419)
                      +.++.+++++++||..+.  +++++|+|++|.|++ .....|.++++|+.|++++|.+..+..                 
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-----------------   71 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----------------   71 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-----------------
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-----------------
Confidence            456666666666665443  456666666666654 334455566666666666665554322                 


Q ss_pred             EcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257         178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR  257 (419)
Q Consensus       178 ~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  257 (419)
                                 ..+..+++|++|+|++|+|..+.+.+|.++++|++|+|++|+|+.+++.+|..+++|++|+|++|.+..
T Consensus        72 -----------~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          72 -----------NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             -----------TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             -----------cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence                       344455566666666666666666666666666666666666666666666666666666666666554


Q ss_pred             cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257         258 LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS  314 (419)
Q Consensus       258 l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~  314 (419)
                      ..........++.+.+..|.++...+.          .+..+..+++..|.+.|++.
T Consensus       141 ~~~~~~~~~~l~~~~l~~~~~~c~~p~----------~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         141 NCHLAWFAEWLRKKSLNGGAARCGAPS----------KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SGGGHHHHHHHHHHCCSGGGCBBCSST----------TTTTSBGGGSCTTTCCCCCC
T ss_pred             ccchHHHhhhhhhhcccCCCeEeCCCh----------hhcCCEeeecCHhhCcCCCC
Confidence            331111111233444444544432211          13334455677777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=141.89  Aligned_cols=133  Identities=20%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             EEEcCCCCCCCcCcccCCCCCCCcEEEccCC-cCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCC
Q psy4257         199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHN-LLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN  276 (419)
Q Consensus       199 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N  276 (419)
                      .++++++.+..+ +..+.++++|++|++++| .|+.++...|.++++|+.|+|++|+|+.|+ ..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            344444444443 333444455555555433 255555555555555555555555555553 33555555555555566


Q ss_pred             cccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257         277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS  341 (419)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~  341 (419)
                      +|+.++...+.        ..++..|+|++|||.|+|++.|+.+|++....... .....|..+.
T Consensus        91 ~l~~l~~~~~~--------~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~-~~~~~C~~p~  146 (156)
T d2ifga3          91 ALESLSWKTVQ--------GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVP-EQKLQCHGQG  146 (156)
T ss_dssp             CCSCCCSTTTC--------SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCG-GGCCCCSSSS
T ss_pred             CCcccChhhhc--------cccccccccCCCcccCCchHHHHHHHHHhccCccC-cCCcEECcCh
Confidence            65555554432        33577899999999999999999999986433222 2445665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.5e-20  Score=177.17  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=78.2

Q ss_pred             CCcEEeccccccccc--ccccccccccceeecccccCc-----cCccccccccccceeecccccccCc-----hhhhc-C
Q psy4257           4 DLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITSL-----DGLLR-G   70 (419)
Q Consensus         4 ~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~L~~n~l~-----~i~~~~~~~~~L~~L~l~~n~i~~l-----~~~~~-~   70 (419)
                      +|++||+++++++..  ...+..+++++.|+|++|.|+     .|...+..+++|++|+|++|.|...     ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            688899999998743  344566888999999999887     3344567888899999999988642     22222 2


Q ss_pred             CCCCCEEecCCCCCcccC----hhhhcCCCCCCEEEccCCcCc
Q psy4257          71 LTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQIT  109 (419)
Q Consensus        71 l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~  109 (419)
                      ..+|+.|++++|+++...    ...+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            347999999999887654    245667888999999888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.8e-20  Score=175.49  Aligned_cols=293  Identities=20%  Similarity=0.164  Sum_probs=172.2

Q ss_pred             cccceeecccccCccC--ccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccChhhhc-----
Q psy4257          26 SKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRRDEFQ-----   93 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~i--~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----   93 (419)
                      .+|+.||+++++++..  ...+..+++++.|+|++|.|+.     |..++..+++|+.|+|++|.|+......+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4799999999999953  4457888999999999999874     456788999999999999998754333332     


Q ss_pred             CCCCCCEEEccCCcCcc-----ccccccCCccCcEEecccccccccChh-------------------------------
Q psy4257          94 NLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFLLD-------------------------------  137 (419)
Q Consensus        94 ~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------------------  137 (419)
                      ...+|++|+|++|+++.     ++..+..+++|++|++++|.+......                               
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            23589999999999974     345678899999999999987532110                               


Q ss_pred             --hhcCCCCccEEEcCCCCCcccc-------------------CC--CC-------------------------------
Q psy4257         138 --DIRGLKRLRTVDLSYNKINKFG-------------------TR--NE-------------------------------  163 (419)
Q Consensus       138 --~~~~l~~L~~L~l~~n~l~~~~-------------------~~--~~-------------------------------  163 (419)
                        .+.....++.++++++.+....                   ..  ..                               
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence              1122344555665555432100                   00  00                               


Q ss_pred             -----CCCcccCcccccEEEcCCCCCcCch-----hhhcCCCCCcEEEcCCCCCCCcCccc-----CCCCCCCcEEEccC
Q psy4257         164 -----GKNQVQGVTNIFELKLQHNEIENLD-----GALMGIHGLSRLDLSHNKLRTISPDD-----FIGLDSLKMLDISH  228 (419)
Q Consensus       164 -----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~  228 (419)
                           ..........++.+++++|.+....     ..+...+.++.+++++|.+.......     ......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 0000112345666666666654321     22334555666666666653211111     12234566677776


Q ss_pred             CcCcccCchh----ccCCCCCceEeCcCCcccc-----cCccC-CCCCCcCEEecCCCcccccchhhhhhcccceecCCc
Q psy4257         229 NLLTTLEETS----KTFLPALEELFVSHNSLTR-----LDKDF-HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNS  298 (419)
Q Consensus       229 n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~-----l~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~  298 (419)
                      |.+.......    +....+|++|+|++|+|..     +.+.+ ...+.|++|+|++|+|+......+..   .+...++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~  398 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA---TLLANHS  398 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH---HHHHCCC
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH---HHhcCCC
Confidence            6665443222    2234567777777776653     22222 23456777777777766543332211   1223566


Q ss_pred             ceeEEecCCccccccchHHHHHHH
Q psy4257         299 TLRIYLEGNPVLCDDSMRAVIDAM  322 (419)
Q Consensus       299 l~~l~l~~Np~~c~~~~~~~~~~l  322 (419)
                      |++|++++|++. +.....+.+.+
T Consensus       399 L~~L~Ls~N~i~-~~g~~~l~~~l  421 (460)
T d1z7xw1         399 LRELDLSNNCLG-DAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSSCC-HHHHHHHHHHH
T ss_pred             CCEEECCCCcCC-HHHHHHHHHHH
Confidence            677777777653 23334444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.5e-18  Score=137.38  Aligned_cols=138  Identities=20%  Similarity=0.284  Sum_probs=109.6

Q ss_pred             ccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChh
Q psy4257          11 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD   90 (419)
Q Consensus        11 ~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~   90 (419)
                      +.+.|...+. +.++.+|+.|+|++|+|+.++..+..+++|+.|++++|.|..++. |..+++|+.|++++|++..+.+.
T Consensus         4 t~~~i~~~~~-~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_           4 TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             CHHHHHTSCE-EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSC
T ss_pred             CHHHHhhhHh-ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCcc
Confidence            3344444433 556778999999999999887667788899999999999988854 78889999999999999998887


Q ss_pred             hhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccccccccC---hhhhcCCCCccEEEc
Q psy4257          91 EFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDL  150 (419)
Q Consensus        91 ~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l  150 (419)
                      .+..+++|++|++++|+|..++.  .+..+++|++|++++|.++...   ...+..+++|+.||.
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            78888999999999999887753  5778888999999999887654   235667788887763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.2e-17  Score=126.26  Aligned_cols=104  Identities=25%  Similarity=0.321  Sum_probs=71.6

Q ss_pred             cEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCc
Q psy4257           6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT   85 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~   85 (419)
                      |+|+|++|+|+.++. +..+++|++|++++|.|+.+|..+..+++|+.|++++|.|+.+++ +..+++|+.|++++|+|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            467777777776653 666777777777777777776667777777777777777777654 666777777777777776


Q ss_pred             ccCh-hhhcCCCCCCEEEccCCcCccc
Q psy4257          86 MVRR-DEFQNLHNLDSISLQNNQITSM  111 (419)
Q Consensus        86 ~~~~-~~~~~~~~L~~L~L~~n~l~~i  111 (419)
                      .+.. ..+..+++|++|++++|.++.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            6543 4566666777777777766544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.6e-17  Score=133.57  Aligned_cols=125  Identities=21%  Similarity=0.311  Sum_probs=110.1

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD   80 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~   80 (419)
                      +.+|++|+|++|+|+.++..+..+++|+.|+|++|.|+.+ +.|..+++|++|++++|++..++ ..+..+++|+.|+++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            4579999999999999987667799999999999999998 46899999999999999999986 456789999999999


Q ss_pred             CCCCcccCh-hhhcCCCCCCEEEccCCcCccccc----cccCCccCcEEecc
Q psy4257          81 FNQITMVRR-DEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLS  127 (419)
Q Consensus        81 ~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~----~l~~l~~L~~L~l~  127 (419)
                      +|+|..+.. ..+..+++|++|++++|.++.++.    .+..+++|++||..
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            999988754 578999999999999999998763    47888999999843

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=3.4e-17  Score=151.38  Aligned_cols=246  Identities=18%  Similarity=0.164  Sum_probs=121.8

Q ss_pred             ccccccccceeecccccCc-----cCccccccccccceeecccccccC-----------chhhhcCCCCCCEEecCCCCC
Q psy4257          21 QLGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS-----------LDGLLRGLTKLQVFNMDFNQI   84 (419)
Q Consensus        21 ~~~~~~~L~~L~L~~n~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-----------l~~~~~~l~~L~~L~l~~n~l   84 (419)
                      .+.....|+.|+|++|.|.     .+...+...++|+.|+++++.+..           +...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3444566666777666654     223334555666666666554332           112344556666666666665


Q ss_pred             cccChh----hhcCCCCCCEEEccCCcCccc-----cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCC
Q psy4257          85 TMVRRD----EFQNLHNLDSISLQNNQITSM-----NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI  155 (419)
Q Consensus        85 ~~~~~~----~~~~~~~L~~L~L~~n~l~~i-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  155 (419)
                      ......    .+..+++|++|++++|.+...     ...+..+               .........+.|+.+++++|++
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---------------~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---------------AVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---------------HHHHHHHTCCCCCEEECCSSCC
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccccccc---------------ccccccccCcccceeecccccc
Confidence            554322    223455666666666655411     0000000               0000012233444444444444


Q ss_pred             ccccCCCCCCCcccCcccccEEEcCCCCCcC------chhhhcCCCCCcEEEcCCCCCCCcC----cccCCCCCCCcEEE
Q psy4257         156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLD  225 (419)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~  225 (419)
                      ...... .....+.....|++|++++|.+..      +...+..+++|+.|+|++|.++...    ...+..+++|++|+
T Consensus       171 ~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         171 ENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             TGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             cccccc-cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            321100 000112233445555555555442      1123445566777777776664321    23445566777777


Q ss_pred             ccCCcCcccCchhc----c--CCCCCceEeCcCCcccc-----cCccCC-CCCCcCEEecCCCcccccc
Q psy4257         226 ISHNLLTTLEETSK----T--FLPALEELFVSHNSLTR-----LDKDFH-GLPVLCKADLAHNNIKAIN  282 (419)
Q Consensus       226 L~~n~l~~~~~~~~----~--~l~~L~~L~L~~N~i~~-----l~~~~~-~l~~L~~L~L~~N~l~~~~  282 (419)
                      |++|.|.+.....+    .  ....|++|++++|+|..     +...+. .+++|++|+|++|.+...+
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            77777665322222    1  23567788888877754     223332 4677888888888886544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=2e-17  Score=152.97  Aligned_cols=270  Identities=17%  Similarity=0.133  Sum_probs=159.2

Q ss_pred             cCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccccc
Q psy4257          40 ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS  114 (419)
Q Consensus        40 ~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~  114 (419)
                      .+...+.....|+.|+|++|.|..     +...+...++|+.|+++++.+.........             .+..+...
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~-------------~~~~l~~~   88 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-------------ALRLLLQA   88 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-------------HHHHHHHH
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch-------------HHHHHHHH
Confidence            343445556666666666666543     233445556666666665543322100000             00011122


Q ss_pred             ccCCccCcEEecccccccccCh----hhhcCCCCccEEEcCCCCCccccCCCC--------CCCcccCcccccEEEcCCC
Q psy4257         115 LSGLTKLAYLYLSHNQLTEFLL----DDIRGLKRLRTVDLSYNKINKFGTRNE--------GKNQVQGVTNIFELKLQHN  182 (419)
Q Consensus       115 l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~~~~~~L~~L~l~~n  182 (419)
                      +..+++|+.|+|++|.+.....    ..+...++|+.|++++|.+........        ..........|+.+.+++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            3334455555555555443221    222344556666666555432110000        0001234567899999999


Q ss_pred             CCcC-----chhhhcCCCCCcEEEcCCCCCCCc-----CcccCCCCCCCcEEEccCCcCcccC----chhccCCCCCceE
Q psy4257         183 EIEN-----LDGALMGIHGLSRLDLSHNKLRTI-----SPDDFIGLDSLKMLDISHNLLTTLE----ETSKTFLPALEEL  248 (419)
Q Consensus       183 ~l~~-----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L  248 (419)
                      .+..     +...+.....|+.|+|++|.+...     ....+..+++|+.|+|++|.+....    ...+..+++|++|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            8863     334556788999999999998642     2345677899999999999987542    2345678999999


Q ss_pred             eCcCCcccccC-----ccCC--CCCCcCEEecCCCcccccchhhhhhccccee-cCCcceeEEecCCcccccc-chHHHH
Q psy4257         249 FVSHNSLTRLD-----KDFH--GLPVLCKADLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCDD-SMRAVI  319 (419)
Q Consensus       249 ~L~~N~i~~l~-----~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~-~~~~l~~l~l~~Np~~c~~-~~~~~~  319 (419)
                      +|++|.|....     ..+.  ....|++|++++|+|+.-....+..   .+. ..+.+++|+++||.+..+. .+.++.
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~---~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~  325 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VIDEKMPDLLFLELNGNRFSEEDDVVDEIR  325 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH---HHHccCCCCCEEECCCCcCCCcchHHHHHH
Confidence            99999987632     3333  3468999999999987654443322   121 3678999999999987654 344566


Q ss_pred             HHHHhh
Q psy4257         320 DAMETI  325 (419)
Q Consensus       320 ~~l~~~  325 (419)
                      ..+...
T Consensus       326 ~~~~~~  331 (344)
T d2ca6a1         326 EVFSTR  331 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.6e-16  Score=122.20  Aligned_cols=117  Identities=22%  Similarity=0.263  Sum_probs=85.0

Q ss_pred             ceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257          29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI  108 (419)
Q Consensus        29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  108 (419)
                      |.|+|++|+|+.++ .+..+.+|++|++++|.|+.+|..+..+++|+.|++++|+|+.++  .|..+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC--ccccccccCeEECCCCcc
Confidence            57888888888775 477888888888888888888777788888888888888888773  477788888888888888


Q ss_pred             cccc--ccccCCccCcEEecccccccccC---hhhhcCCCCccEE
Q psy4257         109 TSMN--SSLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTV  148 (419)
Q Consensus       109 ~~i~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L  148 (419)
                      ..++  ..+..+++|+.|++++|.+.+..   ...+..+++|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7765  35667777777777777765431   2233344555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-16  Score=141.97  Aligned_cols=219  Identities=19%  Similarity=0.172  Sum_probs=127.8

Q ss_pred             cEEeccccccccccccccc--ccccceeecccccCccCccccccccccceeecccccccC--chhhhcCCCCCCEEecCC
Q psy4257           6 NWLFLNNNRLKSLEGQLGT--LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         6 ~~L~l~~n~l~~l~~~~~~--~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~   81 (419)
                      +.||++++.+.  ++.+..  -..+..+.+++..+...........+|++|+++++.+..  +...+.++++|++|++++
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46888888764  111211  123455556555554332333445688889998888764  556778888899999988


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCC-cCcc--ccccccCCccCcEEeccccc-ccccC-hhhh-cCCCCccEEEcCCCC-
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNN-QITS--MNSSLSGLTKLAYLYLSHNQ-LTEFL-LDDI-RGLKRLRTVDLSYNK-  154 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~--i~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~-~~l~~L~~L~l~~n~-  154 (419)
                      |.+.......++.+++|++|++++| .++.  +......+++|++|++++|. +++.. ...+ ...++|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8887776777888888888888885 5652  22234566788888887753 33221 1122 223567777776542 


Q ss_pred             -CccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCC-CCCCcCcccCCCCCCCcEEEccCC-cC
Q psy4257         155 -INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSLKMLDISHN-LL  231 (419)
Q Consensus       155 -l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l  231 (419)
                       +...                           .+...+..+++|++|++++| .+++.....+..+++|++|+|++| .+
T Consensus       161 ~i~~~---------------------------~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         161 NLQKS---------------------------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             GSCHH---------------------------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ccccc---------------------------cccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence             2111                           11222334556666666654 344444445555666666666663 34


Q ss_pred             cccCchhccCCCCCceEeCcCC
Q psy4257         232 TTLEETSKTFLPALEELFVSHN  253 (419)
Q Consensus       232 ~~~~~~~~~~l~~L~~L~L~~N  253 (419)
                      ++.....++.+++|+.|+++++
T Consensus       214 ~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         214 IPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTS
T ss_pred             ChHHHHHHhcCCCCCEEeeeCC
Confidence            4433334455566666666555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.58  E-value=3.3e-17  Score=138.59  Aligned_cols=112  Identities=27%  Similarity=0.388  Sum_probs=53.4

Q ss_pred             ccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCC
Q psy4257          17 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH   96 (419)
Q Consensus        17 ~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~   96 (419)
                      .++..+..+++|++|+|++|+|+.++ .+..+++|+.|++++|.|..++..+..+++|+.|++++|+|+.+  ..+..++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccc--ccccccc
Confidence            33334444555555555555555442 34455555555555555555443333334455555555555443  2244444


Q ss_pred             CCCEEEccCCcCcccc--ccccCCccCcEEecccccc
Q psy4257          97 NLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQL  131 (419)
Q Consensus        97 ~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l  131 (419)
                      +|+.|++++|+|+.++  ..+..+++|+.|++++|.+
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCcc
Confidence            5555555555554443  2344444555555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.6e-15  Score=131.79  Aligned_cols=226  Identities=15%  Similarity=0.088  Sum_probs=147.1

Q ss_pred             CcEEecccccccccccccccccccceeecccccCcc--CccccccccccceeecccccccC-chhhhcCCCCCCEEecCC
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~--i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~   81 (419)
                      +..+.++...+...........+|++|+++++.+..  +...+..+++|++|++++|.+.. ....+..+++|+.|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344555555554332333446789999999988863  44457888999999999998875 345677889999999998


Q ss_pred             C-CCcccChhh-hcCCCCCCEEEccCC-cCcc--cccccc-CCccCcEEeccccc--ccccC-hhhhcCCCCccEEEcCC
Q psy4257          82 N-QITMVRRDE-FQNLHNLDSISLQNN-QITS--MNSSLS-GLTKLAYLYLSHNQ--LTEFL-LDDIRGLKRLRTVDLSY  152 (419)
Q Consensus        82 n-~l~~~~~~~-~~~~~~L~~L~L~~n-~l~~--i~~~l~-~l~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~  152 (419)
                      | .++...... +.++++|++|+++++ .++.  +...+. ..++|+.|+++++.  ++... ...+..+++|++|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            5 465432222 456889999999986 4542  222233 34689999998753  44322 22345678999999988


Q ss_pred             CC-CccccCCCCCCCcccCcccccEEEcCCC-CCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccC-CCCCCCcEEEccC
Q psy4257         153 NK-INKFGTRNEGKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSLKMLDISH  228 (419)
Q Consensus       153 n~-l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~  228 (419)
                      |. +++..     ...+..+++|++|++++| .++.- ...+..+++|+.|+++++ +.......+ ..+++|   ++..
T Consensus       185 ~~~itd~~-----~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~  255 (284)
T d2astb2         185 SVMLKNDC-----FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINC  255 (284)
T ss_dssp             CTTCCGGG-----GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESC
T ss_pred             ccCCCchh-----hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccC
Confidence            74 44322     224567889999999996 45532 245677899999999987 332222222 234554   4566


Q ss_pred             CcCcccCchhc
Q psy4257         229 NLLTTLEETSK  239 (419)
Q Consensus       229 n~l~~~~~~~~  239 (419)
                      +.++.+....+
T Consensus       256 ~~ls~~~~~~~  266 (284)
T d2astb2         256 SHFTTIARPTI  266 (284)
T ss_dssp             CCSCCTTCSSC
T ss_pred             ccCCCCCCCcc
Confidence            77776654443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=6.9e-16  Score=130.29  Aligned_cols=108  Identities=25%  Similarity=0.398  Sum_probs=96.8

Q ss_pred             CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257           2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF   81 (419)
Q Consensus         2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~   81 (419)
                      +++|++|+|++|+|+.++ .+..+++|+.|+|++|.|+.++..+..+++|+.|++++|.|+.++. +..+++|+.|++++
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~  124 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEEESE
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            678999999999999986 4888999999999999999998666667889999999999999865 77889999999999


Q ss_pred             CCCcccCh-hhhcCCCCCCEEEccCCcCccc
Q psy4257          82 NQITMVRR-DEFQNLHNLDSISLQNNQITSM  111 (419)
Q Consensus        82 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i  111 (419)
                      |+|..+.. ..|..+++|+.|++++|.+...
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             chhccccccccccCCCccceeecCCCccccC
Confidence            99998754 5789999999999999988755

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-13  Score=109.34  Aligned_cols=106  Identities=23%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             ccceeecccccCccCccccccccccceeecccc-cccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257          27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN-RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ  104 (419)
Q Consensus        27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n-~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  104 (419)
                      ..+.++++++.+.++|..+..+++|++|++.+| .|+.++ ..|.++++|+.|++++|+|+.+.+.+|.++++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344566666666666666666666666666544 466664 456666777777777777777766667777777777777


Q ss_pred             CCcCccccccccCCccCcEEeccccccc
Q psy4257         105 NNQITSMNSSLSGLTKLAYLYLSHNQLT  132 (419)
Q Consensus       105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~  132 (419)
                      +|+|+.++.......+|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            7777666554444445666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.5e-10  Score=92.28  Aligned_cols=121  Identities=18%  Similarity=0.171  Sum_probs=81.6

Q ss_pred             cccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccCh--hhhcCCCCCCEEEc
Q psy4257          26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISL  103 (419)
Q Consensus        26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L  103 (419)
                      ...+.|++++....   ..+..+..+..++..++.+..++..+..+++|+.|++++|+|+.+.+  ..+..+++|+.|+|
T Consensus        22 ~~~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          22 GSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SSSCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hhhCeeecccCCCC---chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            34566777654422   12344445555566566555566666778899999999999888753  45677889999999


Q ss_pred             cCCcCccccc-cccCCccCcEEecccccccccCh-------hhhcCCCCccEEE
Q psy4257         104 QNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLL-------DDIRGLKRLRTVD  149 (419)
Q Consensus       104 ~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~  149 (419)
                      ++|.|+.+++ .+....+|+.|++.+|.+.....       ..+..+++|+.||
T Consensus        99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          99 SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999888754 23344578888888888875432       2355677777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.1e-09  Score=88.42  Aligned_cols=118  Identities=20%  Similarity=0.140  Sum_probs=85.0

Q ss_pred             CcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCch---hhhcCCCCCCEEecCC
Q psy4257           5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD---GLLRGLTKLQVFNMDF   81 (419)
Q Consensus         5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~---~~~~~l~~L~~L~l~~   81 (419)
                      .+.|++++...  . ..+..+..+..++..++....++..+..+++|++|+|++|+|+.++   ..+..+++|+.|++++
T Consensus        24 ~~~Ldls~l~~--~-~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          24 QQALDLKGLRS--D-PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             SCCBCCCCCSS--C-TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hCeeecccCCC--C-chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            44555555432  1 1233344555555555555555545677899999999999999764   4577899999999999


Q ss_pred             CCCcccChhhhcCCCCCCEEEccCCcCcccc--------ccccCCccCcEEe
Q psy4257          82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN--------SSLSGLTKLAYLY  125 (419)
Q Consensus        82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~--------~~l~~l~~L~~L~  125 (419)
                      |.|..+..-.+....+|+.|++++|.+....        ..+..+|+|+.||
T Consensus       101 N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         101 NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999987766666678999999999987431        2356789999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=5.3e-07  Score=72.55  Aligned_cols=107  Identities=14%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             ccccceeecccc-cCc-----cCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccCh----
Q psy4257          25 LSKLQLLVIEQN-QLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----   89 (419)
Q Consensus        25 ~~~L~~L~L~~n-~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~----   89 (419)
                      .+.|+.|+|+++ .++     .+-..+.....|++|+|++|.+..     +...+...+.|+.|++++|.|.....    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            566777777653 354     122345566677777777776653     33455666777777777777765432    


Q ss_pred             hhhcCCCCCCEEEccCCcCccc--------cccccCCccCcEEecccccc
Q psy4257          90 DEFQNLHNLDSISLQNNQITSM--------NSSLSGLTKLAYLYLSHNQL  131 (419)
Q Consensus        90 ~~~~~~~~L~~L~L~~n~l~~i--------~~~l~~l~~L~~L~l~~n~l  131 (419)
                      .++...+.|++|++++|.+..+        ...+...+.|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            2445566778888877755433        33445567788887766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.14  E-value=2.2e-06  Score=68.82  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             cccccceeecccc-cccC-----chhhhcCCCCCCEEecCCCCCcccCh----hhhcCCCCCCEEEccCCcCcc-----c
Q psy4257          47 LFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS-----M  111 (419)
Q Consensus        47 ~~~~L~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~-----i  111 (419)
                      +.+.|++|+|+++ .+..     +-..+.....|+.|++++|.+.....    ..+...+.|++|+|++|.|+.     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4467777888764 3542     23456666777777777777754322    234455667777777777663     2


Q ss_pred             cccccCCccCcEEecccccccccC-------hhhhcCCCCccEEEcCCC
Q psy4257         112 NSSLSGLTKLAYLYLSHNQLTEFL-------LDDIRGLKRLRTVDLSYN  153 (419)
Q Consensus       112 ~~~l~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n  153 (419)
                      -..+...+.|++|++++|.+..+.       ...+...+.|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            234555566777777666544321       223333455666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.91  E-value=3.9e-06  Score=67.18  Aligned_cols=109  Identities=14%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             ccccccceeeccc-ccCc-----cCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccCh--
Q psy4257          23 GTLSKLQLLVIEQ-NQLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRR--   89 (419)
Q Consensus        23 ~~~~~L~~L~L~~-n~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~--   89 (419)
                      ...+.|+.|+|++ +.++     .+...+..+++|++|++++|.+..     +...+.....++.+++++|.+.....  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3467788888876 4465     233345667788888888887764     33456667788888888887765432  


Q ss_pred             --hhhcCCCCCCEEEcc--CCcCcc-----ccccccCCccCcEEecccccc
Q psy4257          90 --DEFQNLHNLDSISLQ--NNQITS-----MNSSLSGLTKLAYLYLSHNQL  131 (419)
Q Consensus        90 --~~~~~~~~L~~L~L~--~n~l~~-----i~~~l~~l~~L~~L~l~~n~l  131 (419)
                        ..+...+.|+.++|.  +|.+..     +...+...++|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              345667778876654  556652     345566778888888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.79  E-value=6.4e-06  Score=65.86  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             ccccccceeeccc-ccccC-----chhhhcCCCCCCEEecCCCCCcccCh----hhhcCCCCCCEEEccCCcCcc-----
Q psy4257          46 QLFSQLGSLYANN-NRITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS-----  110 (419)
Q Consensus        46 ~~~~~L~~L~l~~-n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~-----  110 (419)
                      .+.+.|++|++++ +.|+.     +-.++...++|+.|++++|.+.....    ..+.....++.+++++|.+..     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567888888886 44653     33456677888888888888765433    344556788888888887762     


Q ss_pred             ccccccCCccCcEEec--cccccccc----ChhhhcCCCCccEEEcCCCCC
Q psy4257         111 MNSSLSGLTKLAYLYL--SHNQLTEF----LLDDIRGLKRLRTVDLSYNKI  155 (419)
Q Consensus       111 i~~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l  155 (419)
                      +...+...++|+.++|  ++|.+...    ....+...+.|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3355666777876555  45566542    334455677888888876644