Psyllid ID: psy4290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MTGTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKDRCTTTQAD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHccccccEEEEEEcEEEEEEccEEcHHHHHccccEEEEEEEEEEEEEEEEccccccccEEEEEEcEEEEEEEccHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccHHHcEEEEEcccEEEcccccHHHHHHHcccEEEEEEEEEEEEEEEEcHHcccccEEEEEcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHEEcccccccccc
Coil and Loop (DISEMBL)
mtgtsnqfCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESlvpfhfvsghinelrikvpwtslgsssVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLvpighsaptawcfkdrctttqad
Flexible Loop (DISEMBL)
mtgtsnqfcENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVpwtslgssSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGhsaptawcFKDRCTTTQAD
Low Complexity Region (SEG)
MTGTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKDRCTTTQAD
Disordered region (IsUnstruct)
********CENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKDRCT*****
Disordered Region (DISOPRED)
MTGTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGI***********************************************
Disordered Region (DISEMBL)
********CENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKD********
Disordered Region (DISPRO)
****SNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKDRCT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKDRCTTTQAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q80TY5	4013	Vacuolar protein sorting-	yes	N/A	0.496	0.016	0.492	3e-11
Q7Z7G8	4022	Vacuolar protein sorting-	no	N/A	0.496	0.016	0.492	3e-11
Q5H8C4	3166	Vacuolar protein sorting-	no	N/A	0.548	0.023	0.384	2e-07
Q96RL7	3174	Vacuolar protein sorting-	no	N/A	0.548	0.023	0.358	2e-06
Q54KX3	4246	Putative vacuolar protein	yes	N/A	0.496	0.015	0.347	5e-06
Q555C6	6061	Putative vacuolar protein	no	N/A	0.437	0.009	0.416	2e-05
O42926	3131	Vacuolar protein sorting-	yes	N/A	0.666	0.028	0.315	5e-05
P87319	3011	Vacuolar protein sorting-	no	N/A	0.459	0.020	0.359	6e-05
Q8BX70	3748	Vacuolar protein sorting-	no	N/A	0.533	0.019	0.328	6e-05
Q709C8	3753	Vacuolar protein sorting-	no	N/A	0.533	0.019	0.328	6e-05

>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
          ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18 IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74 SVEVVIDTI 82
           V + I+T+
Sbjct: 78 PVVITINTM 86

May be involved in protein sorting in post Golgi membrane traffic.
Mus musculus (taxid: 10090)

>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
          ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18 IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74 SVEVVIDTI 82
           V + I+T+
Sbjct: 78 PVVITINTM 86

May be involved in protein sorting in post Golgi membrane traffic.

Homo sapiens (taxid: 9606)

>sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 6  NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
          N+F  + V  L E   S L L +W+G     NL +   AL  L VPF    GHI  L++K
Sbjct: 12 NRFLGDYVVNLDE---SQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVGHIGSLKLK 68

Query: 65 VPWTSLGSSSVEVVIDTI 82
          +PW +L +  VE V++ I
Sbjct: 69 IPWKNLYTQPVEAVLEEI 86

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 6  NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
          N+F  + V +L     S L L +W+G     NL++   AL  L VPF    GHI  L++ 
Sbjct: 12 NRFLGDYVVDLDT---SQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLI 68

Query: 65 VPWTSLGSSSVEVVIDTI 82
          +PW +L +  VE V++ I
Sbjct: 69 IPWKNLYTQPVEAVLEEI 86

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 16 LQEFFRS----TLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSL 70
          L+E+ ++     L + +W G     NLEL   ALE   +PF    G + +L +K+PW +L
Sbjct: 14 LKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGFLGKLSLKIPWNNL 73

Query: 71 GSSSVEVVIDTI 82
           +  V VVID +
Sbjct: 74 KTEPVIVVIDQL 85

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Dictyostelium discoideum (taxid: 44689)

>sp|Q555C6|VP13B_DICDI Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 24 LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
          L+++++ G     NLE+  EAL+S  +P H   G I  L +K+PWT+L SS V   ID I
Sbjct: 26 LKINVFSGNVVLKNLEIKGEALQSFKLPLHVQKGIIGTLTLKIPWTNLKSSPVIFDIDCI 85

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Dictyostelium discoideum (taxid: 44689)

>sp|O42926|VP13B_SCHPO Vacuolar protein sorting-associated protein 13b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13b PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 1  MTGTSNQFCENEVAELQEFFRST-LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHI 58
          + G    F    + E  E F +T L++ +W G     NL+L   A   L +P     G +
Sbjct: 2  LEGLLANFLNRLLGEYIENFDATQLKVAVWNGDVTLRNLQLKRSAFRKLELPISVQYGLV 61

Query: 59 NELRIKVPWTSLGSSSVEVVIDTIGYLSGIFE 90
           EL +K+PW+SL +  VE+ I  I  L+ + E
Sbjct: 62 EELTLKIPWSSLKNKPVEIYIVGIRALASMEE 93

May be involved in recycling of membrane proteins between an endocytic compartment and the TGN.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P87319|VP13A_SCHPO Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 24 LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
          L + +W G    HNL +  EAL+ L +P    SG I    +++PW++L + S+ + I+ I
Sbjct: 26 LNIGVWGGHVSLHNLRIKPEALDKLGIPIEITSGLIGTFTLEIPWSNLRNKSLTINIEDI 85

Query: 83 GYLS 86
           YLS
Sbjct: 86 -YLS 88

May be involved in recycling of membrane proteins between an endocytic compartment and the TGN.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 6  NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
          N+F  + V  L    +S L+L +W G     NL++   AL  L VPF   +G I++L +K
Sbjct: 12 NRFLGDYVENLN---KSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQIDKLTLK 68

Query: 65 VPWTSLGSSSVEVVID 80
          +PW +L   +V   ++
Sbjct: 69 IPWKNLYGEAVVATLE 84

Mus musculus (taxid: 10090)

>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 6  NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
          N+F  + V  L    +S L+L +W G     NL++   AL  L VPF   +G I++L +K
Sbjct: 12 NRFLGDYVENLN---KSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQIDKLTLK 68

Query: 65 VPWTSLGSSSVEVVID 80
          +PW +L   +V   ++
Sbjct: 69 IPWKNLYGEAVVATLE 84

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
328716262	3698	PREDICTED: vacuolar protein sorting-asso	0.459	0.016	0.546	2e-12
195452432	3785	GK13201 [Drosophila willistoni] gi|19416	0.577	0.020	0.469	3e-11
321458134	296	hypothetical protein DAPPUDRAFT_217952 [	0.533	0.243	0.456	1e-10
431901767	1760	Vacuolar protein sorting-associated prot	0.659	0.050	0.428	2e-10
195113777	3743	GI10796 [Drosophila mojavensis] gi|19391	0.474	0.017	0.5	3e-10
189241022	3667	PREDICTED: similar to vacuolar protein s	0.607	0.022	0.417	3e-10
241568969	3547	vacuolar protein-sorting protein, putati	0.429	0.016	0.6	4e-10
432107636	1770	Vacuolar protein sorting-associated prot	0.659	0.050	0.417	6e-10
301609817	4023	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.496	0.016	0.507	6e-10
291388345	3980	PREDICTED: vacuolar protein sorting 13B	0.785	0.026	0.377	7e-10

>gi|328716262|ref|XP_001946415.2| PREDICTED: vacuolar protein sorting-associated protein 13B-like [Acyrthosiphon pisum]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 21 RSTLQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHINELRIKVPWTSLGSSSVEVV 78
          R   Q+ LW+G+  F NLELDL+ LE  +  PF  +SGHIN+L I+VPWT LGS +V++ 
Sbjct: 25 RQDAQVSLWDGEGLFQNLELDLDVLEKELNLPFIVISGHINQLLIRVPWTKLGSEAVKIT 84

Query: 79 IDTI 82
          IDTI
Sbjct: 85 IDTI 88

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195452432|ref|XP_002073351.1| GK13201 [Drosophila willistoni] gi|194169436|gb|EDW84337.1| GK13201 [Drosophila willistoni]

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 11 NEVAELQEFFRS-TLQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHINELRIKVPW 67
          N VA+  + FR    Q+ LWEG+  FHNL+L L+ LE  +  P   VSGHI+EL I+VPW
Sbjct: 14 NYVAKYVKNFRDEDAQVSLWEGEVTFHNLDLRLDVLEEELNLPVELVSGHIHELSIQVPW 73

Query: 68 TSLGSSSVEVVIDTIGYLSGI 88
          T L S  V++VI+TI +++ +
Sbjct: 74 TKLMSEPVKIVINTIEFVAKL 94

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458134|gb|EFX69207.1| hypothetical protein DAPPUDRAFT_217952 [Daphnia pulex]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 9/81 (11%)

Query: 25  QLHLWEGQACFHNLELDLEALESLV--PFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
           Q+ LW G A FHNL+L L+ LE+ +  PF F SGHI+ELRI VPWT L S S+ + I+TI
Sbjct: 29  QVSLWGGDAVFHNLDLRLDVLEAELHSPFTFSSGHIHELRIHVPWTKLASESIVITINTI 88

Query: 83  GYLSGIFECMAAIHALNGRYA 103
                  EC   + +   R +
Sbjct: 89  -------ECTLKLKSTEDRVS 102

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|431901767|gb|ELK08644.1| Vacuolar protein sorting-associated protein 13B [Pteropus alecto]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 16  LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
           ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18  IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74  SVEVVIDTIGYLSGIFECMAAIHALNGRYAT 104
           SV + I+T+  +  + + M   H   G  +T
Sbjct: 78  SVVITINTMECILKLKDGMQDDHESCGSNST 108

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195113777|ref|XP_002001444.1| GI10796 [Drosophila mojavensis] gi|193918038|gb|EDW16905.1| GI10796 [Drosophila mojavensis]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 25 QLHLWEGQACFHNLELDLEALESLV--PFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
          Q+ LWEG+A FHNL+L L+ LE  +  P   VSGHI+EL I+VPWT L S  V + I+TI
Sbjct: 29 QVSLWEGEASFHNLDLRLDVLEEELNLPIELVSGHIHELSIQVPWTKLTSEPVRIEINTI 88

Query: 83 GYLSGI 88
           +++ +
Sbjct: 89 EFVAKL 94

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241022|ref|XP_970618.2| PREDICTED: similar to vacuolar protein sorting-associated protein [Tribolium castaneum]

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 16  LQEFFRSTLQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHINELRIKVPWTSLGSS 73
           ++ F     Q+ LW G A FHNL+L LE LE  +  PF F+SGHI EL I VPWT L S 
Sbjct: 20  IKNFRLEDSQVSLWGGDASFHNLDLRLEVLEQELQSPFSFISGHIRELLIHVPWTKLTSE 79

Query: 74  SVEVVIDTIGYLSGIFECMAAIHALNGRYAT 104
            + + I+TI       EC+  +   N   A+
Sbjct: 80  PITITINTI-------ECVLKLKDANSSVAS 103

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241568969|ref|XP_002402615.1| vacuolar protein-sorting protein, putative [Ixodes scapularis] gi|215500056|gb|EEC09550.1| vacuolar protein-sorting protein, putative [Ixodes scapularis]

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 25 QLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
          QL LW G A F NL+L LEALE    +PF  V+GHI+ELRI VPWT L S  V V I+TI
Sbjct: 29 QLSLWGGDAVFSNLDLRLEALEQELRLPFRLVNGHIHELRIHVPWTKLTSEPVVVTINTI 88

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432107636|gb|ELK32869.1| Vacuolar protein sorting-associated protein 13B [Myotis davidii]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 16  LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
           ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18  IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74  SVEVVIDTIGYLSGIFECMAAIHALNGRYAT 104
            V + I+T+  +  + + M   H   G  +T
Sbjct: 78  PVVITINTMECILKLKDGMQDDHESCGSNST 108

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301609817|ref|XP_002934455.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like [Xenopus (Silurana) tropicalis]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
          ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18 IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74 SVEVVIDTI 82
          SV + I+T+
Sbjct: 78 SVVITINTM 86

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291388345|ref|XP_002710632.1| PREDICTED: vacuolar protein sorting 13B [Oryctolagus cuniculus]

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 8/114 (7%)

Query: 16  LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
           ++    S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS 
Sbjct: 18  IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77

Query: 74  SVEVVIDTIGYLSGIFECMAAIHALNGRYAT------ALQYAILLVPIGHSAPT 121
            V + I+T+  +  + + M   H   G  +T      + + +I    I  +APT
Sbjct: 78  PVVITINTMECILKLKDGMQDDHESCGSNSTNRSVNESTKSSIKPRRIQQAAPT 131

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
MGI|MGI:1916380	4013	Vps13b "vacuolar protein sorti	0.451	0.015	0.539	7.3e-10
UNIPROTKB|Q7Z7G8	4022	VPS13B "Vacuolar protein sorti	0.451	0.015	0.539	7.3e-10
UNIPROTKB|F1SIL5	3172	VPS13A "Uncharacterized protei	0.562	0.023	0.395	5e-07
UNIPROTKB|E1C549	3008	E1C549 "Uncharacterized protei	0.562	0.025	0.382	6.4e-07
MGI|MGI:2444304	3166	Vps13a "vacuolar protein sorti	0.548	0.023	0.384	1.4e-06
UNIPROTKB|Q96RL7	3174	VPS13A "Vacuolar protein sorti	0.562	0.023	0.370	1.6e-06
ASPGD|ASPL0000032755	3169	AN5579 [Emericella nidulans (t	0.525	0.022	0.347	2.9e-06
UNIPROTKB|G4N6L6	3223	MGG_06537 "Vacuolar protein so	0.525	0.022	0.333	1e-05
UNIPROTKB|D4A899	3062	Vps13a "Protein Vps13a" [Rattu	0.562	0.024	0.370	2e-05
DICTYBASE|DDB_G0287055	4246	vps13F "vacuolar protein sorti	0.518	0.016	0.342	3.6e-05

MGI|MGI:1916380 Vps13b "vacuolar protein sorting 13B (yeast)" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 34/63 (53%), Positives = 41/63 (65%)

Query:    22 STLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSSSVEVVI 79
             S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS  V + I
Sbjct:    24 SDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITI 83

Query:    80 DTI 82
             +T+
Sbjct:    84 NTM 86

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q7Z7G8 VPS13B "Vacuolar protein sorting-associated protein 13B" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 34/63 (53%), Positives = 41/63 (65%)

Query:    22 STLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSSSVEVVI 79
             S LQL LW G      LEL L+ LE    +PF F+SGHI+ELRI VPWT LGS  V + I
Sbjct:    24 SDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITI 83

Query:    80 DTI 82
             +T+
Sbjct:    84 NTM 86

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SIL5 VPS13A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 32/81 (39%), Positives = 42/81 (51%)

Query:     6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
             N+F  + V  L     S L L +W G     NLE+   AL  L VPF    GHI  L +K
Sbjct:    12 NRFLGDYVVNLDT---SQLTLGIWGGDVALKNLEIKENALSQLDVPFKIKVGHIGNLNLK 68

Query:    65 VPWTSLGSSSVEVVIDTIGYL 85
             +PW +L +  VE V++ I YL
Sbjct:    69 IPWKNLYTQPVEAVLEDI-YL 88

GO:0035176 "social behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

UNIPROTKB|E1C549 E1C549 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 31/81 (38%), Positives = 45/81 (55%)

Query:     6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
             N+F  + V  L     S L+L +W G     NLE+   AL  L VPF   +GHI +L ++
Sbjct:    12 NRFLGDYVVNLDS---SQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAGHIGQLNLQ 68

Query:    65 VPWTSLGSSSVEVVIDTIGYL 85
             +PW +L +  VE V+D + YL
Sbjct:    69 IPWQNLYTQPVEAVLDGV-YL 88

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

MGI|MGI:2444304 Vps13a "vacuolar protein sorting 13A (yeast)" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 30/78 (38%), Positives = 42/78 (53%)

Query:     6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
             N+F  + V  L E   S L L +W+G     NL +   AL  L VPF    GHI  L++K
Sbjct:    12 NRFLGDYVVNLDE---SQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVGHIGSLKLK 68

Query:    65 VPWTSLGSSSVEVVIDTI 82
             +PW +L +  VE V++ I
Sbjct:    69 IPWKNLYTQPVEAVLEEI 86

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0031045 "dense core granule" evidence=IDA

GO:0035176 "social behavior" evidence=IMP

UNIPROTKB|Q96RL7 VPS13A "Vacuolar protein sorting-associated protein 13A" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:     6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
             N+F  + V +L     S L L +W+G     NL++   AL  L VPF    GHI  L++ 
Sbjct:    12 NRFLGDYVVDLDT---SQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLI 68

Query:    65 VPWTSLGSSSVEVVIDTIGYL 85
             +PW +L +  VE V++ I YL
Sbjct:    69 IPWKNLYTQPVEAVLEEI-YL 88

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=NAS

GO:0008104 "protein localization" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000032755 AN5579 [Emericella nidulans (taxid:162425)]

 Score = 126 (49.4 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query:    16 LQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSS 74
             ++ F    L + +W G     NLEL  EAL+ L +P + V GH+ EL + +PW++L    
Sbjct:    18 VKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHVGELTLSIPWSNLRGKP 77

Query:    75 VEVVIDTIGYLS 86
             V+V I+ +  L+
Sbjct:    78 VKVDIEDVFLLA 89

GO:0045053 "protein retention in Golgi apparatus" evidence=IEA

GO:0006623 "protein targeting to vacuole" evidence=IEA

GO:0032120 "ascospore-type prospore membrane assembly" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005628 "prospore membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4N6L6 MGG_06537 "Vacuolar protein sorting-associated protein 13" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 121 (47.7 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 24/72 (33%), Positives = 43/72 (59%)

Query:    16 LQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSS 74
             +Q F  + L++ +W G     NL+L  EAL+ L +P + V GH+  L + +PW++L  + 
Sbjct:    18 VQNFDPAQLKVGIWSGDVNLKNLQLRREALDQLKLPLNVVEGHLGNLTLVIPWSNLRGAP 77

Query:    75 VEVVIDTIGYLS 86
             V+V I+ +  L+
Sbjct:    78 VKVYIEDVFLLA 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|D4A899 Vps13a "Protein Vps13a" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:     6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
             N+F  + V  L +   S L L +W+G     NL +   AL  L VPF    G I  L++K
Sbjct:    12 NRFLGDYVVNLDQ---SQLSLGIWKGAVVLKNLVIKENALHELDVPFKVKVGRIGSLQLK 68

Query:    65 VPWTSLGSSSVEVVIDTIGYL 85
             +PW +L +  VE V++ I YL
Sbjct:    69 IPWKNLYTQPVEAVLEEI-YL 88

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

DICTYBASE|DDB_G0287055 vps13F "vacuolar protein sorting-associated protein 13 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:    16 LQEFFRS----TLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSL 70
             L+E+ ++     L + +W G     NLEL   ALE   +PF    G + +L +K+PW +L
Sbjct:    14 LKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGFLGKLSLKIPWNNL 73

Query:    71 GSSSVEVVIDTIGYLS 86
              +  V VVID + Y++
Sbjct:    74 KTEPVIVVIDQL-YIT 88

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
pfam12624	117	pfam12624, Chorein_N, N-terminal region of Chorein	7e-20
COG5043	2552	COG5043, MRS6, Vacuolar protein sorting-associated	7e-09

>gnl|CDD|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM vesicle-mediated sorter

 Score = 78.4 bits (194), Expect = 7e-20
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 21 RSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVI 79
          +  L + +W G     NL L  +AL+ L +P    SGHI +L +K+PW SLGS  V + I
Sbjct: 22 KEQLSVSIWSGDVELENLRLKKDALDKLDLPIEVKSGHIGKLTLKIPWKSLGSEPVVITI 81

Query: 80 DTI 82
          D +
Sbjct: 82 DDV 84

Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Length = 117

>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 24 LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
          L + +W G    HNL +   AL+ L +P    SG I  L +++PW+SL +  VE+ I+ I
Sbjct: 26 LNVGVWGGDVSLHNLRIKPSALDKLGLPIEVTSGLIGTLTLEIPWSSLKNKPVEIYIEDI 85

Length = 2552

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF12624	118	Chorein_N: N-terminal region of Chorein, a TM vesi	99.94
COG5043	2552	MRS6 Vacuolar protein sorting-associated protein [	99.86
KOG1809|consensus	1827		99.73
KOG2955|consensus	1069		99.48

>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter

Probab=99.94  E-value=2.7e-27  Score=172.37  Aligned_cols=88  Identities=31%  Similarity=0.443  Sum_probs=82.9

Q ss_pred             HhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCceEEeeeec
Q psy4290          11 NEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIF   89 (135)
Q Consensus        11 ~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~V~I~l~~~   89 (135)
                      .||+||+|++.+|+++++|+|+++|+||+||+++|+.+ +|+++++|+||+++++|||++|+++|++|+|+||+++++|.
T Consensus        12 ~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~~~lP~~v~~g~i~~l~i~IPw~~l~~~pv~i~I~~v~l~~~~~   91 (118)
T PF12624_consen   12 YLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNNLGLPIEVKSGSIGKLRIKIPWTSLWSKPVVIEIEDVFLVLKPK   91 (118)
T ss_pred             HHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcCcCCCeEEeEEEeeeEEEEEEhHHhCCCCEEEEEeeEEEEEEEC
Confidence            44799999999999999999999999999999999999 99999999999999999999999999999999999999998


Q ss_pred             chhhhhHHh
Q psy4290          90 ECMAAIHAL   98 (135)
Q Consensus        90 ~~~~~~~~~   98 (135)
                      +...+..+.
T Consensus        92 ~~~~~~~~~  100 (118)
T PF12624_consen   92 DQDEWDNEE  100 (118)
T ss_pred             CccccChHH
Confidence            876665554

>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

Probab=99.86  E-value=6.3e-22  Score=190.97  Aligned_cols=87  Identities=29%  Similarity=0.515  Sum_probs=82.0

Q ss_pred             chhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCc
Q psy4290           3 GTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDT   81 (135)
Q Consensus         3 ~~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~   81 (135)
                      +++|+|+   |.||||+|..||++++|+|+|+|+||+||+++|+.| +|++|++|.||.|++.|||++|+.+||+|.|+|
T Consensus         8 nlLNRlL---GsYVENfD~~QLnvgvw~GdVsl~NLriK~saldkL~lpi~V~sgligtLtl~iPWsSLknKPVeIyIed   84 (2552)
T COG5043           8 NLLNRLL---GSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALDKLGLPIEVTSGLIGTLTLEIPWSSLKNKPVEIYIED   84 (2552)
T ss_pred             HHHHHHH---HHHHhhcCccceeEEEecceeEEEeeeecHHHHhhcCCCeEEeecceeeEEEEeehHHhcCCCeEEEEEe
Confidence            4566665   799999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             eEEeeeecchh
Q psy4290          82 IGYLSGIFECM   92 (135)
Q Consensus        82 V~I~l~~~~~~   92 (135)
                      +++.+.|+...
T Consensus        85 i~llis~~~~~   95 (2552)
T COG5043          85 IYLLISPQAKN   95 (2552)
T ss_pred             eEEEechhhcc
Confidence            99999887654

>KOG1809|consensus

Probab=99.73  E-value=7.7e-18  Score=165.71  Aligned_cols=92  Identities=32%  Similarity=0.489  Sum_probs=85.6

Q ss_pred             chhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCc
Q psy4290           3 GTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDT   81 (135)
Q Consensus         3 ~~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~   81 (135)
                      .++|+|+   |.|++|+|.+||++++|+|+|+|+||++|+++|+.| +|+++.+|.||++.++|||++|..+|+.+.++|
T Consensus         8 ~lLnr~L---G~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~L~~P~~v~~g~ig~l~L~IPw~sL~~~pv~~~i~~   84 (1827)
T KOG1809|consen    8 DLLNRFL---GDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSKLDLPFEVKSGLIGTLTLKIPWKSLYNKPVEINIED   84 (1827)
T ss_pred             HHHHHHh---hhcccCCCCCcceEEEecceeEeechhhCHHHHhccCCCeEEeeeeeeeEEEeccchhcccCceEEEEee
Confidence            4577777   699999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             eEEeeeecchhhhhHH
Q psy4290          82 IGYLSGIFECMAAIHA   97 (135)
Q Consensus        82 V~I~l~~~~~~~~~~~   97 (135)
                      ++++..|.....++.+
T Consensus        85 i~~l~~p~s~~~~~~~  100 (1827)
T KOG1809|consen   85 IYLLVVPLSNVKYDPE  100 (1827)
T ss_pred             eeeEeecccccccCch
Confidence            9999998887655443

>KOG2955|consensus

Probab=99.48  E-value=5.6e-14  Score=129.15  Aligned_cols=92  Identities=22%  Similarity=0.329  Sum_probs=85.8

Q ss_pred             CCc-hhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc--CC--eEEeEEEEeEEEEEEecCCCCCccE
Q psy4290           1 MTG-TSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL--VP--FHFVSGHINELRIKVPWTSLGSSSV   75 (135)
Q Consensus         1 ~~~-~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l--lP--~~v~~G~Ig~L~i~IPW~~L~s~pv   75 (135)
                      |+| .+||..+||++|.+||.+||++++.++|+.+|+||+|++++|...  ||  +.|+..++|++.|.|||++|.++|+
T Consensus         1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lPwtklkT~PI   80 (1069)
T KOG2955|consen    1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKGTAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLPWTKLKTEPI   80 (1069)
T ss_pred             CchHHHHHHHHHHHHHHhcCChhhEeeeeccccceecceecCHHHHHHhhcCCchheeeeeeecceEEeccchhccccce
Confidence            444 479999999999999999999999999999999999999999988  88  8999999999999999999999999


Q ss_pred             EEEeCceEEeeeecchh
Q psy4290          76 EVVIDTIGYLSGIFECM   92 (135)
Q Consensus        76 ~I~I~~V~I~l~~~~~~   92 (135)
                      +|.||.|.++++..++.
T Consensus        81 ~v~iDkl~l~le~~~e~   97 (1069)
T KOG2955|consen   81 VVQIDKLDLVLEENPEA   97 (1069)
T ss_pred             EEEeeeeeEEeecCccc
Confidence            99999999999776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00