Psyllid ID: psy4310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMGE
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEccEcHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
MLQIGYLMLChylnfplycgiccmgdiEGLIDKVnelklddnEELIEKIKHGQFTLRDMYEQFQNIMkmgpfsqimgmipgfsqdflskgseQESMARLKRLMTIMDsmndgeldnrdgaklfskqtgritrvaqgagvtEKEVKDLISQYTKFAAVVKKMGgikglfkggditKNVNQTQMMKLNQQMAKMmdprvlhqmge
Flexible Loop (DISEMBL)
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKlfskqtgritrvaqgagvtekevKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMGE
Low Complexity Region (SEG)
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMGE
Disordered region (IsUnstruct)
**QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS*********************************************RITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKN***************************
Disordered Region (DISOPRED)
*LQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELK**********IKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG*******************RLMTIMDSMNDGELDNRD*********GRITRVAQGAGVTEKEVKDLISQYT********************************************VLHQ***
Disordered Region (DISEMBL)
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMGE
Disordered Region (DISPRO)
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGI************VNQTQ***********MDP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q5R4R6	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
Q4R965	504	Signal recognition partic	N/A	N/A	0.921	0.371	0.791	2e-84
P61011	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
P61010	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
Q2T9U1	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
Q6AYB5	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
P14576	504	Signal recognition partic	yes	N/A	0.921	0.371	0.791	2e-84
Q8MZJ6	499	Signal recognition partic	N/A	N/A	0.921	0.374	0.732	3e-78
P49969	497	Signal recognition partic	N/A	N/A	0.871	0.356	0.421	3e-35
P49972	499	Signal recognition partic	N/A	N/A	0.871	0.354	0.421	3e-35

>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).
Pongo abelii (taxid: 9601)

>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Macaca fascicularis (taxid: 9541)

>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Homo sapiens (taxid: 9606)

>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Canis familiaris (taxid: 9615)

>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Bos taurus (taxid: 9913)

>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Rattus norvegicus (taxid: 10116)

>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Mus musculus (taxid: 10090)

>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1

 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/187 (73%), Positives = 166/187 (88%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGD+EGL++KV++LKLD+NEEL++K+KHGQFTLRDMYEQFQNIMKMGPF+QI
Sbjct: 288 PFVSKLLGMGDLEGLMEKVSDLKLDENEELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQI 347

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGFS DF+SKG+E+ESMA+LKRLMT+MDSMNDGELD+ +GAKLFSKQ GR  RVA+
Sbjct: 348 IGMIPGFSPDFMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVAR 407

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+G + +EV +L+ QY+ F+A VKKMGGIKGLFKGGD+ KNVN +QM KLNQQMAKMMDP
Sbjct: 408 GSGTSVREVNELLKQYSNFSATVKKMGGIKGLFKGGDLGKNVNPSQMAKLNQQMAKMMDP 467

Query: 196 RVLHQMG 202
           RVL QMG
Sbjct: 468 RVLQQMG 474

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Geodia cydonium (taxid: 6047)

>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1

 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 119/190 (62%), Gaps = 13/190 (6%)

Query: 16  PLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
           P    +  MGD+ GL+DK+ + +  D   EL+ K+  G FTLR +YEQFQN++KMGP  Q
Sbjct: 289 PFVSRLLGMGDLSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQ 348

Query: 75  IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
           +  M+PGFS + + KG E+E  A++KR MTIMDSM   ELD+ +  KL ++   RI R+A
Sbjct: 349 VFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTN-PKLMTE--SRIIRIA 405

Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
           +G+G   ++V D++ +Y + A +  KM G+K    G   D+++N+N        QQM K 
Sbjct: 406 RGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLN-------IQQMTKA 458

Query: 193 MDPRVLHQMG 202
           + P+VL QMG
Sbjct: 459 LPPQVLKQMG 468

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Hordeum vulgare (taxid: 4513)

>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 120/190 (63%), Gaps = 13/190 (6%)

Query: 16  PLYCGICCMGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
           P    +  MGD  G +DK++E+  +D   EL++K+  G FTLR MYEQFQNI+KMGP  Q
Sbjct: 289 PFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQ 348

Query: 75  IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
           +  M+PGFS + + KG E ES A++KR MT+MDSM + ELD+ +  KL +    RI R+A
Sbjct: 349 VFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSN-PKLMT--DSRIMRIA 405

Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
           +G+G    EV D++ +Y + A +  KM G+K   KG    +++N+N        Q M+K+
Sbjct: 406 RGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA-------QHMSKV 458

Query: 193 MDPRVLHQMG 202
           + P++L Q+G
Sbjct: 459 LPPQMLKQIG 468

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein).

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
242009196	501	Signal recognition particle 54 kDa prote	0.921	0.373	0.903	3e-93
332372642	505	unknown [Dendroctonus ponderosae]	0.921	0.370	0.871	3e-90
110763770	498	PREDICTED: signal recognition particle 5	0.921	0.375	0.860	3e-90
383847489	506	PREDICTED: signal recognition particle 5	0.921	0.369	0.866	8e-90
307199091	506	Signal recognition particle 54 kDa prote	0.921	0.369	0.866	1e-89
350423805	506	PREDICTED: signal recognition particle 5	0.921	0.369	0.855	1e-89
91079686	508	PREDICTED: similar to AGAP004610-PA [Tri	0.921	0.368	0.860	1e-89
307183983	506	Signal recognition particle 54 kDa prote	0.921	0.369	0.866	1e-89
340722086	506	PREDICTED: signal recognition particle 5	0.921	0.369	0.855	2e-89
332024403	506	Signal recognition particle 54 kDa prote	0.921	0.369	0.860	8e-89

>gi|242009196|ref|XP_002425377.1| Signal recognition particle 54 kDa protein, putative [Pediculus humanus corporis] gi|212509171|gb|EEB12639.1| Signal recognition particle 54 kDa protein, putative [Pediculus humanus corporis]

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 175/187 (93%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 284 PFISKLLGMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 343

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDFLSKGSEQESMARLKR+MTIMDSMNDGELDNRDGAKLF+KQ+ RI RVAQ
Sbjct: 344 MGMIPGFSQDFLSKGSEQESMARLKRVMTIMDSMNDGELDNRDGAKLFTKQSSRIVRVAQ 403

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGD+ KNVNQ QM KLNQQMA+MMDP
Sbjct: 404 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQAQMTKLNQQMARMMDP 463

Query: 196 RVLHQMG 202
           RVL QMG
Sbjct: 464 RVLQQMG 470

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372642|gb|AEE61463.1| unknown [Dendroctonus ponderosae]

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/187 (87%), Positives = 176/187 (94%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKL+DNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLEDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKGSEQESMARLK+LMTIMDSMNDGELD+RDGAK+FSKQ GRI RVAQ
Sbjct: 349 MGMIPGFSQDFMSKGSEQESMARLKKLMTIMDSMNDGELDSRDGAKVFSKQQGRIVRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTE+EVK+LI+QYTKFAAVVKKMGGIKGLFKGGD+ KNVNQ QM KLNQQMA+MMDP
Sbjct: 409 GSGVTEREVKELIAQYTKFAAVVKKMGGIKGLFKGGDMGKNVNQNQMAKLNQQMARMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763770|ref|XP_624497.2| PREDICTED: signal recognition particle 54 kDa protein-like [Apis mellifera]

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 173/187 (92%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQN+MKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNVMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKG+EQESMARLKR+MTIMDSMND ELDNRDGAKLFSKQ GRITRVAQ
Sbjct: 349 MGMIPGFSQDFMSKGTEQESMARLKRIMTIMDSMNDSELDNRDGAKLFSKQPGRITRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKD+I+QYTKFAAVVKKMGGIKGLFK GD++KNVN  QM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDVITQYTKFAAVVKKMGGIKGLFKAGDMSKNVNSIQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847489|ref|XP_003699385.1| PREDICTED: signal recognition particle 54 kDa protein-like [Megachile rotundata]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 171/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+ KG+EQES+ RLKRLMTIMDSMND ELDNRDGAKLFSKQ GRI RVAQ
Sbjct: 349 MGMIPGFSQDFMPKGTEQESVVRLKRLMTIMDSMNDSELDNRDGAKLFSKQPGRIVRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKDLI+QYTKFAAVVKKMGGIKGLFK GD++KNVN TQM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDLITQYTKFAAVVKKMGGIKGLFKAGDMSKNVNSTQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199091|gb|EFN79801.1| Signal recognition particle 54 kDa protein [Harpegnathos saltator]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 172/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKG+EQESMARLKRLMTIMDSMND ELD+RDGAKLFSKQ GRI RVA+
Sbjct: 349 MGMIPGFSQDFMSKGTEQESMARLKRLMTIMDSMNDSELDSRDGAKLFSKQPGRIVRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKDLI+QYTKFAAVVKKMGGIKGLFK GD+ KNVN TQM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDLITQYTKFAAVVKKMGGIKGLFKAGDMAKNVNPTQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423805|ref|XP_003493597.1| PREDICTED: signal recognition particle 54 kDa protein-like [Bombus impatiens]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/187 (85%), Positives = 172/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQN+MKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNVMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKG+EQESMARLKR+MTIMDSMND ELDNRDGAKLFSKQ GRI RVAQ
Sbjct: 349 MGMIPGFSQDFMSKGTEQESMARLKRIMTIMDSMNDSELDNRDGAKLFSKQPGRIVRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKD+I+QYTKFAAVVKKMGGIKGLFK GD++KNVN  QM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDVITQYTKFAAVVKKMGGIKGLFKAGDMSKNVNSIQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079686|ref|XP_967889.1| PREDICTED: similar to AGAP004610-PA [Tribolium castaneum] gi|270003347|gb|EEZ99794.1| hypothetical protein TcasGA2_TC002574 [Tribolium castaneum]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 174/187 (93%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKL+DNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFVSKLLGMGDIEGLIDKVNELKLEDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKGSEQESM+RLKRLMTIMDSMND ELD+RDGAK+FSKQ GR+ RVAQ
Sbjct: 349 MGMIPGFSQDFMSKGSEQESMSRLKRLMTIMDSMNDDELDSRDGAKIFSKQNGRVVRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTE+EVK+LI+QYTKFAAVVKKMGGIKGLFKGGD+ KNVN  QM KLNQQMAKMMDP
Sbjct: 409 GSGVTEREVKELITQYTKFAAVVKKMGGIKGLFKGGDMAKNVNPAQMAKLNQQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183983|gb|EFN70554.1| Signal recognition particle 54 kDa protein [Camponotus floridanus]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 172/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKG+EQESMARLKRLMTIMDSMND ELD+RDGAKLFSKQ GRI RVA+
Sbjct: 349 MGMIPGFSQDFMSKGTEQESMARLKRLMTIMDSMNDSELDSRDGAKLFSKQPGRIMRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKDLI+QYTKFAAVVKKMGGIKGLFK GD+ KNVN TQM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDLITQYTKFAAVVKKMGGIKGLFKAGDMAKNVNPTQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722086|ref|XP_003399441.1| PREDICTED: signal recognition particle 54 kDa protein-like [Bombus terrestris]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/187 (85%), Positives = 172/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQN+MKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNVMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           MGMIPGFSQDF+SKG+EQESMARLKR+MTIMDSMND ELDNRDGAKLFSKQ GRI RVAQ
Sbjct: 349 MGMIPGFSQDFMSKGTEQESMARLKRIMTIMDSMNDSELDNRDGAKLFSKQPGRIIRVAQ 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKD+I+QYTKFAAVVKKMGGIKGLFK GD++KNVN  QM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDVITQYTKFAAVVKKMGGIKGLFKAGDMSKNVNSIQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024403|gb|EGI64601.1| Signal recognition particle 54 kDa protein [Acromyrmex echinatior]

 Score =  332 bits (850), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 171/187 (91%)

Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNEL LDDNEEL+EKIKHGQFTLRDMYEQFQNIMKMGPFSQ+
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELNLDDNEELLEKIKHGQFTLRDMYEQFQNIMKMGPFSQL 348

Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           M MIPGFSQDF+SKG+EQESMARLKRLMTIMDSMND ELD+RDGAKLFSKQ GRI RVA+
Sbjct: 349 MNMIPGFSQDFMSKGTEQESMARLKRLMTIMDSMNDSELDSRDGAKLFSKQPGRIMRVAR 408

Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GVTEKEVKDLI+QYTKFAAVVKKMGGIKGLFK GD+ KNVN TQM KLN QMAKMMDP
Sbjct: 409 GSGVTEKEVKDLITQYTKFAAVVKKMGGIKGLFKAGDMAKNVNPTQMAKLNHQMAKMMDP 468

Query: 196 RVLHQMG 202
           RVLHQMG
Sbjct: 469 RVLHQMG 475

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
ZFIN|ZDB-GENE-040426-818	504	srp54 "signal recognition part	0.921	0.371	0.796	1.3e-77
UNIPROTKB|Q2T9U1	504	SRP54 "Signal recognition part	0.921	0.371	0.791	4.3e-77
UNIPROTKB|P61010	504	SRP54 "Signal recognition part	0.921	0.371	0.791	4.3e-77
UNIPROTKB|G3V4F7	440	SRP54 "Signal recognition part	0.921	0.425	0.791	4.3e-77
UNIPROTKB|P61011	504	SRP54 "Signal recognition part	0.921	0.371	0.791	4.3e-77
UNIPROTKB|F2Z5M9	504	SRP54 "Uncharacterized protein	0.921	0.371	0.791	4.3e-77
UNIPROTKB|Q4R965	504	SRP54 "Signal recognition part	0.921	0.371	0.791	4.3e-77
UNIPROTKB|Q5R4R6	504	SRP54 "Signal recognition part	0.921	0.371	0.791	4.3e-77
RGD|621390	504	Srp54 "signal recognition part	0.921	0.371	0.791	4.3e-77
UNIPROTKB|E1C6G6	504	SRP54 "Uncharacterized protein	0.921	0.371	0.786	1.1e-76

ZFIN|ZDB-GENE-040426-818 srp54 "signal recognition particle 54" [Danio rerio (taxid:7955)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 149/187 (79%), Positives = 168/187 (89%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNEELI+K+KHGQFTLRDMYEQFQNIMKMGPF QI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEELIDKLKHGQFTLRDMYEQFQNIMKMGPFGQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             MGMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELDN+DGAKLFSKQ  RI RVA+
Sbjct:   349 MGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDNKDGAKLFSKQPNRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV  ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNVN +QM KLNQQMAKMMDP
Sbjct:   409 GSGVATRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

UNIPROTKB|Q2T9U1 SRP54 "Signal recognition particle 54 kDa protein" [Bos taurus (taxid:9913)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0042493 "response to drug" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008144 "drug binding" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|P61010 SRP54 "Signal recognition particle 54 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0005829 "cytosol" evidence=TAS

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=ISS;IMP

GO:0042493 "response to drug" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS;IMP

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008144 "drug binding" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=IDA

GO:0006617 "SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" evidence=IMP

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|G3V4F7 SRP54 "Signal recognition particle 54 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   225 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 284

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   285 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 344

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   345 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 404

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   405 RVLHHMG 411

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|P61011 SRP54 "Signal recognition particle 54 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0016607 "nuclear speck" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0008144 "drug binding" evidence=IDA

GO:0006617 "SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" evidence=ISS

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IDA

GO:0008312 "7S RNA binding" evidence=IDA

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0045047 "protein targeting to ER" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IC;TAS

GO:0043021 "ribonucleoprotein complex binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|F2Z5M9 SRP54 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q4R965 SRP54 "Signal recognition particle 54 kDa protein" [Macaca fascicularis (taxid:9541)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0005525 "GTP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0008144 "drug binding" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|Q5R4R6 SRP54 "Signal recognition particle 54 kDa protein" [Pongo abelii (taxid:9601)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0005525 "GTP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0008144 "drug binding" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

RGD|621390 Srp54 "signal recognition particle 54A" [Rattus norvegicus (taxid:10116)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/187 (79%), Positives = 170/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0003674 "molecular_function" evidence=ND

GO:0003924 "GTPase activity" evidence=IEA;ISO

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008144 "drug binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008312 "7S RNA binding" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA;ISO

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA;ISO

GO:0045047 "protein targeting to ER" evidence=ISO

UNIPROTKB|E1C6G6 SRP54 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 147/187 (78%), Positives = 169/187 (90%)

Query:    16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
             P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct:   289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348

Query:    76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
             +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct:   349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408

Query:   136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
             G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNVN +Q+ KLNQQMAKMMDP
Sbjct:   409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQLAKLNQQMAKMMDP 468

Query:   196 RVLHQMG 202
             RVLH MG
Sbjct:   469 RVLHHMG 475

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4R6	SRP54_PONAB	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A
P14576	SRP54_MOUSE	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A
Q2T9U1	SRP54_BOVIN	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A
P61010	SRP54_CANFA	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A
P61011	SRP54_HUMAN	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A
Q6AYB5	SRP54_RAT	No assigned EC number	0.7914	0.9211	0.3710	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
TIGR01425	429	TIGR01425, SRP54_euk, signal recognition particle	6e-57
PRK00771	437	PRK00771, PRK00771, signal recognition particle pr	4e-35
COG0541	451	COG0541, Ffh, Signal recognition particle GTPase [	9e-35
pfam02978	101	pfam02978, SRP_SPB, Signal peptide binding domain	2e-26
PRK10867	433	PRK10867, PRK10867, signal recognition particle pr	1e-25
TIGR00959	428	TIGR00959, ffh, signal recognition particle protei	4e-24

>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54

 Score =  185 bits (470), Expect = 6e-57
 Identities = 90/133 (67%), Positives = 111/133 (83%), Gaps = 2/133 (1%)

Query: 24  MGDIEGLIDKVNELKLDDNE-ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGDIEGLIDKV +LKLDDNE  LIEK+K G FTLRDMYEQFQN++KMGP  QI+ MIPGF
Sbjct: 296 MGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGF 355

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
           S DF+SKG+E+ESMA++K+LMTIMDSM D ELD+    K+FSKQ  RI RVA+G+G + +
Sbjct: 356 STDFMSKGNEEESMAKIKKLMTIMDSMTDQELDS-TDGKVFSKQPSRIQRVARGSGRSIR 414

Query: 143 EVKDLISQYTKFA 155
           +V++L+ QY KFA
Sbjct: 415 DVQELLEQYKKFA 427

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429

>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54; Provisional

 Score =  128 bits (323), Expect = 4e-35
 Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 7/147 (4%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGD+E L++KV E L  ++ E+ +EK+  G+FTL+DMY+Q + + KMGP  QI+ M+PG 
Sbjct: 289 MGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGL 348

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
               L   + + +  +LK+   IMDSM + EL+N +          RI R+A+G+G T +
Sbjct: 349 GGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEIIN-----ASRIRRIARGSGTTVE 402

Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFK 169
           +V++L+  Y      +K++   KG   
Sbjct: 403 DVRELLKYYKMMKKAMKQLKKGKGKMG 429

Length = 437

>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular trafficking and secretion]

 Score =  127 bits (321), Expect = 9e-35
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 19/174 (10%)

Query: 24  MGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGD+  LI+K  E+   ++ E+L EK+K G+FTL D  EQ + + KMGP S+++ MIPG 
Sbjct: 296 MGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGM 355

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
                S    +    +LKR+  I+DSM   E +N D   + +    R  R+A+G+G + +
Sbjct: 356 GM-KDSDKDIELDEKKLKRIEAIIDSMTPEERENPD--IINAS---RKRRIARGSGTSVQ 409

Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPR 196
           +V  L+ Q+ +   ++KKM G  G  K            MM+  + M     P 
Sbjct: 410 DVNKLLKQFKQMKKMMKKMSGGGGKGK------------MMRGMKGMMGGKFPG 451

Length = 451

>gnl|CDD|202493 pfam02978, SRP_SPB, Signal peptide binding domain

 Score = 96.8 bits (242), Expect = 2e-26
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 53  QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDG 112
           +FTLRD  EQ Q I KMGP S+++ MIPG  +    + + +    +LKR+  I+DSM   
Sbjct: 1   KFTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLMPKEKNVELDEKKLKRIEAIIDSMTPK 60

Query: 113 ELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVV 158
           E DN +   + +    R  R+A+G+G + +EV  L+ Q+ +   ++
Sbjct: 61  ERDNPE---IINGS--RKRRIAKGSGTSVQEVNKLLKQFKQMKKMM 101

Length = 101

>gnl|CDD|236780 PRK10867, PRK10867, signal recognition particle protein; Provisional

 Score =  102 bits (256), Expect = 1e-25
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 11/147 (7%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGD+  LI+K  E +  +  E+L +K+K G+F L D  EQ Q + KMG    ++GM+PG 
Sbjct: 297 MGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGM 356

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
                 K    +    LKR+  I++SM   E   R    + +    R  R+A+G+G T +
Sbjct: 357 GN---MKAQLDDKE--LKRIEAIINSMTPKE---RANPDILNGS--RKRRIAKGSGTTVQ 406

Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFK 169
           EV  L+ Q+ +   ++KKM G  G+ K
Sbjct: 407 EVNRLLKQFEQMKKMMKKMKGKGGMKK 433

Length = 433

>gnl|CDD|233210 TIGR00959, ffh, signal recognition particle protein

 Score = 97.7 bits (244), Expect = 4e-24
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 6/138 (4%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGDI  L++K  E +  ++ ++L EK+K GQF L D  EQ + I KMGP S ++ MIPG 
Sbjct: 296 MGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGM 355

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
                S    +    + KR+  I+ SM   E   R   K+ +    R  R+A G+G T +
Sbjct: 356 GGVKPSLSDLELDEKQFKRIEAIISSMTPEE---RRNPKILNPS--RRKRIAAGSGTTVQ 410

Query: 143 EVKDLISQYTKFAAVVKK 160
           +V  LI ++ +   ++KK
Sbjct: 411 DVNKLIKRFEQMKKMMKK 428

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle [Protein fate, Protein and peptide secretion and trafficking]. Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	100.0
KOG0780|consensus	483		100.0
PRK00771	437	signal recognition particle protein Srp54; Provisi	100.0
PRK10867	433	signal recognition particle protein; Provisional	100.0
TIGR00959	428	ffh signal recognition particle protein. This mode	100.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	100.0
PF02978	104	SRP_SPB: Signal peptide binding domain; InterPro:	100.0

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.2e-57  Score=418.03  Aligned_cols=159  Identities=34%  Similarity=0.511  Sum_probs=146.0

Q ss_pred             ccccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCC
Q psy4310           3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG   81 (203)
Q Consensus         3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG   81 (203)
                      .+.++|||+|||+||||||||||||.||+||+++ +++++++++.+|+.+|+|||+|||+|+++++||||+++|++||||
T Consensus       275 GEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG  354 (451)
T COG0541         275 GEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPG  354 (451)
T ss_pred             CCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCC
Confidence            3678999999999999999999999999999999 588999999999999999999999999999999999999999999


Q ss_pred             CCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      ++ ...+....+.++++++||++||+|||++||+||+++     ++||++|||+||||+++|||+||+||++|++|||+|
T Consensus       355 ~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii-----~~SR~rRIA~GSG~sv~dVn~Llkq~~~m~~mmk~m  428 (451)
T COG0541         355 MG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDII-----NASRKRRIARGSGTSVQDVNKLLKQFKQMKKMMKKM  428 (451)
T ss_pred             CC-CCCchhhhhccHHHHHHHHHHHHcCCHHHhhCcccc-----ChHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            98 223334456789999999999999999999999854     799999999999999999999999999999999999


Q ss_pred             cCCCCC
Q psy4310         162 GGIKGL  167 (203)
Q Consensus       162 ~~~~g~  167 (203)
                      ++..|.
T Consensus       429 ~~~~~~  434 (451)
T COG0541         429 SGGGGK  434 (451)
T ss_pred             hCCCCc
Confidence            875433

>KOG0780|consensus

Probab=100.00  E-value=8.2e-57  Score=411.03  Aligned_cols=195  Identities=55%  Similarity=0.875  Sum_probs=182.0

Q ss_pred             ccccccccccCCchhHHhhcCCCCHHHHHHHHHhccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      .+.+||||+|+|++|||||||||||.||+||++++..++++++.++|.+|+|||+|||+|+++|.||||++++++|||||
T Consensus       276 GEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~~el~~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~  355 (483)
T KOG0780|consen  276 GEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDAKELVEKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGM  355 (483)
T ss_pred             CccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHHHHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCc
Confidence            36799999999999999999999999999999998788999999999999999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      +  .+++.++++++.++|||+++|||||++|||+|+   +|..++||+.||||||||+++||.+||.||++++.++++++
T Consensus       356 s--~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~---~f~~~p~R~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~  430 (483)
T KOG0780|consen  356 S--MMSKGNEEESSAKLKRMMTMMDSMTDEELDSPE---LFVEEPSRIMRVARGSGTSVQEVMELLAQYKKFAAMMKKIG  430 (483)
T ss_pred             c--cCCCcchhHHHHHHHHHHHHHHhcChhhccCcc---ccccCchHhhhhhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            9  478889999999999999999999999999995   56678999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CCcccCccHHHHHHHHHHHHhcCCHHHHhhcC
Q psy4310         163 GIKGLFKG-GDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG  202 (203)
Q Consensus       163 ~~~g~~~~-~~~~~~~~~~~~~~~~~qm~~~~~p~~~~~mg  202 (203)
                      +.+|.... |..+.++++.+++.+.+|+.++.+|.++++||
T Consensus       431 ~~~G~~~~lg~~~~~~~~~~~~~l~q~~~~~~~~~~~~~mg  471 (483)
T KOG0780|consen  431 GIKGIFGALGNPNKNMNPAPMAKLKQQMAKMGPQRLLQQMG  471 (483)
T ss_pred             CCCCcccccCCcccccCcCChHHHHHHHHhcccHHHHHHhc
Confidence            88887754 55456778878888899999999999999998

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=100.00  E-value=1.8e-52  Score=389.26  Aligned_cols=155  Identities=34%  Similarity=0.569  Sum_probs=142.2

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +.|||||+|||+|||+||||||||.+|+|++++ +++++++++.+|+.+|+|||+|||+|+++|+||||+++|++||||+
T Consensus       269 e~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~  348 (437)
T PRK00771        269 EKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGL  348 (437)
T ss_pred             CCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHhCcCc
Confidence            457999999999999999999999999999999 5878899999999999999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      ++. ++....+.+++++++|++||+|||++||+||++   |  ++||++|||+||||+++|||+||++|++|++||++|+
T Consensus       349 ~~~-~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~---~--~~sR~~Ria~GsG~~~~~v~~ll~~~~~~~~~~~~~~  422 (437)
T PRK00771        349 GGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEI---I--NASRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLK  422 (437)
T ss_pred             ccc-chhhhhcccHHHHHHHHHHHHcCCHHHHhCccc---c--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            852 222233567899999999999999999999974   3  7999999999999999999999999999999999998


Q ss_pred             CC
Q psy4310         163 GI  164 (203)
Q Consensus       163 ~~  164 (203)
                      +.
T Consensus       423 ~~  424 (437)
T PRK00771        423 KG  424 (437)
T ss_pred             CC
Confidence            63

>PRK10867 signal recognition particle protein; Provisional

Probab=100.00  E-value=2.8e-52  Score=387.51  Aligned_cols=151  Identities=34%  Similarity=0.518  Sum_probs=140.8

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +.++|||+|||+|||+||||||||.+|+|++++ +++++++++.+|+.+|+|||+|||+|+++|+||||+++|++||||+
T Consensus       277 e~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~  356 (433)
T PRK10867        277 EKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGM  356 (433)
T ss_pred             CccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCc
Confidence            568999999999999999999999999999999 6888899999999999999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      ++ +. .   +.+++++++|++||+|||++||+||++   |  ++||++|||+||||+++|||+||++|++|++||++|+
T Consensus       357 ~~-~~-~---~~~~~~~~~~~~ii~SMt~~Er~~p~~---~--~~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~  426 (433)
T PRK10867        357 GN-MK-A---QLDDKELKRIEAIINSMTPKERANPDI---L--NGSRKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMK  426 (433)
T ss_pred             cc-cc-c---cccHHHHHHHHHHHHcCCHHHHhCccc---c--chHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            85 22 1   356799999999999999999999974   3  7899999999999999999999999999999999998


Q ss_pred             CC
Q psy4310         163 GI  164 (203)
Q Consensus       163 ~~  164 (203)
                      +.
T Consensus       427 ~~  428 (433)
T PRK10867        427 GK  428 (433)
T ss_pred             CC
Confidence            73

>TIGR00959 ffh signal recognition particle protein

Probab=100.00  E-value=3.3e-51  Score=379.93  Aligned_cols=152  Identities=32%  Similarity=0.475  Sum_probs=137.6

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +.++|||+|+|+|||+||||||||.+|+|++++ +++++++++.+++.+|+|||+|||+|+++|+||||+++|++||||+
T Consensus       276 e~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~  355 (428)
T TIGR00959       276 EKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGM  355 (428)
T ss_pred             CChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCc
Confidence            457999999999999999999999999999999 5888899999999999999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKK  160 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kk  160 (203)
                      ++...+....+.+++++++|++||+|||++||+||++   |  ++||++|||+||||+++|||+||++|++|++||++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~---~--~~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~  428 (428)
T TIGR00959       356 GGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKI---L--NPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK  428 (428)
T ss_pred             cccccccccccccHHHHHHHHHHHHcCCHHHHhCccc---c--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            8521111122457899999999999999999999974   3  79999999999999999999999999999999864

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=100.00  E-value=6e-50  Score=371.51  Aligned_cols=151  Identities=56%  Similarity=0.878  Sum_probs=135.4

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +.++|||+|||++||+||||||||.+|+||+++ +++++++++.+|+.+|+|||+|||+|+++|+||||+++|++||||+
T Consensus       276 e~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~  355 (429)
T TIGR01425       276 EHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGF  355 (429)
T ss_pred             CChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCc
Confidence            568999999999999999999999999999999 5777899999999999999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcC--CccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDN--RDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAV  157 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~--p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km  157 (203)
                      ++.+.+....+.++++++||++||+|||++||+|  |+   +|..++||++|||+||||+++|||+||++|++|++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~---i~~~~~sR~~RIa~GSG~~~~~V~~ll~~~~~~~~~  429 (429)
T TIGR01425       356 STDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGK---VFSKQPSRIQRVARGSGRSIRDVQELLEQYKKFAQM  429 (429)
T ss_pred             chhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCc---cccCCccHHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence            8422122223567899999999999999999999  75   443368999999999999999999999999999874

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=7.2e-40  Score=252.44  Aligned_cols=101  Identities=43%  Similarity=0.691  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcc--ccc-ccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchh
Q psy4310          53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQD--FLS-KGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGR  129 (203)
Q Consensus        53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~--~~~-~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR  129 (203)
                      +|||+|||+|+++|.||||+++|++||||+++.  .++ ....+.+++++++|++||+|||++||+||++   |  +.||
T Consensus         1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~l---l--~~sR   75 (104)
T PF02978_consen    1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKL---L--NESR   75 (104)
T ss_dssp             SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGG---H--HHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccc---c--chHH
Confidence            699999999999999999999999999999863  123 3445678999999999999999999999974   4  6799


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q psy4310         130 ITRVAQGAGVTEKEVKDLISQYTKFAAVV  158 (203)
Q Consensus       130 ~~RIA~GSG~~~~eVn~Llkq~~~m~km~  158 (203)
                      ++|||+||||+++|||+||++|+++++||
T Consensus        76 ~~RIA~GSG~~~~eV~~ll~~f~~~~~mm  104 (104)
T PF02978_consen   76 RRRIARGSGTTVQEVNELLKQFKQMKKMM  104 (104)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999986

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2j37_W	504	Model Of Mammalian Srp Bound To 80s Rncs Length = 5		2e-85
1mfq_C	129	Crystal Structure Analysis Of A Ternary S-Domain Co		7e-51
1qb2_A	109	Crystal Structure Of The Conserved Subdomain Of Hum		3e-46
3dm5_A	443	Structures Of Srp54 And Srp19, The Two Proteins Ass		4e-21
2v3c_C	432	Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna C		3e-14
3ndb_B	454	Crystal Structure Of A Signal Sequence Bound To The		3e-14
2ffh_A	425	The Signal Sequence Binding Protein Ffh From Thermu		3e-10
2iy3_A	432	Structure Of The E. Coli Signal Recognition Particl		3e-10
1qzw_A	440	Crystal Structure Of The Complete Core Of Archaeal		4e-10
3kl4_A	433	Recognition Of A Signal Peptide By The Signal Recog		4e-10
2jqe_A	119	Soution Structure Of Af54 M-Domain Length = 119		8e-10
2j28_9	430	Model Of E. Coli Srp Bound To 70s Rncs Length = 430		3e-06
2xxa_A	433	The Crystal Structure Of The Signal Recognition Par		9e-06

>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs Length = 504

Iteration: 1
 Score =  311 bits (797), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16  PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           P    +  MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76  MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
           +GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
           G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
           RVLH MG
Sbjct: 469 RVLHHMG 475

>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex Of Human Signal Recognition Particle Length = 129

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 109/117 (93%)
Query: 52  GQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMND 111
           GQFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND
Sbjct: 13  GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMND 72
Query: 112 GELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLF 168
            ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VKKMGGIKGLF
Sbjct: 73  QELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLF 129

>pdb|1QB2|A Chain A, Crystal Structure Of The Conserved Subdomain Of Human Protein Srp54m At 2.1a Resolution: Evidence For The Mechanism Of Signal Peptide Binding Length = 109

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 101/109 (92%)
Query: 53  QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDG 112
           QFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND 
Sbjct: 1   QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQ 60
Query: 113 ELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161
           ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VKKM
Sbjct: 61  ELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109

>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling The Ribonucleic Core Of The Signal Recognition Particle From The Archaeon Pyrococcus Furiosus. Length = 443

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 21  ICCMGDIEGLIDKVNELK--LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
           +  +GDI+GL++K  EL+  ++  EE IE+   G+FTL+DMY Q + + KMGP  QI+ M
Sbjct: 293 LLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRM 352
Query: 79  IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
           IPG       D +S G E     RLK+   IMDSM + EL N +          RI R+A
Sbjct: 353 IPGLGYSLPDDVISIGEE-----RLKKFKVIMDSMTEEELLNPEII-----NYSRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
           +G+G + K+VK+L+ QY +   + K M
Sbjct: 403 RGSGTSTKDVKELLDQYRQMKKLFKSM 429

>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii Length = 432

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 21  ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
           +  MGD+E L++K  ++  +  EE I+ I  G+FTL ++  Q + I  MG   +I+ MIP
Sbjct: 292 LLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIP 351
Query: 81  GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
           GF    + K     + A++K+   I+ SM   E   R+  K+   +  RI R+A+G+G T
Sbjct: 352 GFG-GAMPKELSHLTEAKIKKYKVIISSMTKEE---RENPKII--KASRIRRIARGSGTT 405
Query: 141 EKEVKDLISQYTKFAAVVKKM 161
           E +V++++  Y      + K+
Sbjct: 406 ENDVREVLRYYETTKNAIDKL 426

>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal Recognition Particle Length = 454

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 21  ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
           +  MGD+E L++K  ++  +  EE I+ I  G+FTL ++  Q + I  MG   +I+ MIP
Sbjct: 292 LLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIP 351
Query: 81  GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
           GF    + K     + A++K+   I+ SM   E   R+  K+   +  RI R+A+G+G T
Sbjct: 352 GFG-GAMPKELSHLTEAKIKKYKVIISSMTKEE---RENPKII--KASRIRRIARGSGTT 405
Query: 141 EKEVKDLISQYTKFAAVVKKM 161
           E +V++++  Y      + K+
Sbjct: 406 ENDVREVLRYYETTKNAIDKL 426

>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus Length = 425

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 21  ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
           I  MGD+  L +KV    L+       K    + +L D  +Q QN+ ++GPFS+I+G++P
Sbjct: 291 ILGMGDVASLAEKVRAAGLEAEAPKSAK----ELSLEDFLKQMQNLKRLGPFSEILGLLP 346
Query: 81  GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
           G  Q    K  E+     +KRL  I+ SM     + R   ++ +    R  R+A+G+G +
Sbjct: 347 GVPQGL--KVDEKA----IKRLEAIVLSMTP---EERKDPRILN--GSRRKRIAKGSGTS 395
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKG 166
            +EV   I  + +  A++K +   KG
Sbjct: 396 VQEVNRFIKAFEEMKALMKSLEKKKG 421

>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound To A Translating Ribosome Length = 432

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 24/130 (18%)
Query: 21  ICCMGDIEGLIDKVNELKLDDN-----EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           I  MGDIE +++KV  L+  D      E+++E    G+ TLRD+Y Q   + KMGP S++
Sbjct: 291 ILGMGDIESILEKVKGLEEYDKIQKKMEDVMEG--KGKLTLRDVYAQIIALRKMGPLSKV 348
Query: 76  MGMIPGF-------SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTG 128
           +  IPG        S+D L  G E     +++R +  ++SM   EL+N +   +  K   
Sbjct: 349 LQHIPGLGIMLPTPSEDQLKIGEE-----KIRRWLAALNSMTYKELENPN---IIDKS-- 398
Query: 129 RITRVAQGAG 138
           R+ R+A+G+G
Sbjct: 399 RMRRIAEGSG 408

>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication Length = 440

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 24/130 (18%)
Query: 21  ICCMGDIEGLIDKVNELKLDDN-----EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           I  MGDIE +++KV  L+  D      E+++E    G+ TLRD+Y Q   + KMGP S++
Sbjct: 299 ILGMGDIESILEKVKGLEEYDKIQKKMEDVMEG--KGKLTLRDVYAQIIALRKMGPLSKV 356
Query: 76  MGMIPGF-------SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTG 128
           +  IPG        S+D L  G E     +++R +  ++SM   EL+N +   +  K   
Sbjct: 357 LQHIPGLGIMLPTPSEDQLKIGEE-----KIRRWLAALNSMTYKELENPN---IIDKS-- 406
Query: 129 RITRVAQGAG 138
           R+ R+A+G+G
Sbjct: 407 RMRRIAEGSG 416

>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition Particle Length = 433

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 24/130 (18%)
Query: 21  ICCMGDIEGLIDKVNELKLDDN-----EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
           I  MGDIE +++KV  L+  D      E+++E    G+ TLRD+Y Q   + KMGP S++
Sbjct: 292 ILGMGDIESILEKVKGLEEYDKIQKKMEDVMEG--KGKLTLRDVYAQIIALRKMGPLSKV 349
Query: 76  MGMIPGF-------SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTG 128
           +  IPG        S+D L  G E     +++R +  ++SM   EL+N +   +  K   
Sbjct: 350 LQHIPGLGIMLPTPSEDQLKIGEE-----KIRRWLAALNSMTYKELENPN---IIDKS-- 399
Query: 129 RITRVAQGAG 138
           R+ R+A+G+G
Sbjct: 400 RMRRIAEGSG 409

>pdb|2JQE|A Chain A, Soution Structure Of Af54 M-Domain Length = 119

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 49  IKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP---GFSQDFLSKGSEQESMARLKRLMTI 105
           ++ G FTL+D+Y+Q + + KMGP  +I  M+P   G   D       QE M   K+   I
Sbjct: 5   MEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKM---KKFRVI 61
Query: 106 MDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQY 151
           MDSM + EL N    K+    + RI R+A G+G + +EVK+L++ Y
Sbjct: 62  MDSMTEEELLN---PKIID--SSRIRRIAIGSGTSPQEVKELLNYY 102

>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs Length = 430

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 17  LYCGICCMGDIEGLIDKVNELKLD--DNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFS 73
           +   I  MGD+  LI+ + E K+D    E+L  K+K G  F L D  EQ + +  MG  +
Sbjct: 289 IASRILGMGDVLSLIEDI-ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMA 347
Query: 74  QIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRV 133
            +MG +PG  Q   +  S+ +    L R+  I++SM       ++ AK    +  R  R+
Sbjct: 348 SLMGKLPGMGQIPDNVKSQMDDKV-LVRMEAIINSMT-----MKERAKPEIIKGSRKRRI 401
Query: 134 AQGAGVTEKEVKDLISQYTKFAAVVKKM 161
           A G G+  ++V  L+ Q+     ++KKM
Sbjct: 402 AAGCGMQVQDVNRLLKQFDDMQRMMKKM 429

>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 433

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 17  LYCGICCMGDIEGLIDKVNELKLD--DNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFS 73
           +   I  MGD+  LI+ + E K+D    E+L  K+K G  F L D  EQ + +  MG  +
Sbjct: 290 IASRILGMGDVLSLIEDI-ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMA 348
Query: 74  QIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRV 133
            +MG +PG  Q   +  S+ +    L R+  I++SM       ++ AK    +  R  R+
Sbjct: 349 SLMGKLPGMGQIPDNVKSQMDDKV-LVRMEAIINSMT-----MKERAKPEIIKGSRKRRI 402
Query: 134 AQGAGVTEKEVKDLISQY 151
           A G+G+  ++V  L+ Q+
Sbjct: 403 AAGSGMQVQDVNRLLKQF 420

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-71
1mfq_C	129	SRP54, signal recognition particle 54KDA protein;	7e-47
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	1e-41
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	2e-39
1qb2_A	109	SRP54, human signal recognition particle 54 KD pro	7e-39
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	8e-35
2xxa_A	433	Signal recognition particle protein; protein trans	3e-20
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	1e-18
2jqe_A	119	SRP54, signal recognition 54 kDa protein; AF54, st	3e-18
1hq1_A	105	Signal recognition particle protein; protein-RNA c	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score =  223 bits (571), Expect = 2e-71
 Identities = 147/179 (82%), Positives = 168/179 (93%)

Query: 24  MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
           MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI+GMIPGF 
Sbjct: 297 MGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG 356

Query: 84  QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
            DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++
Sbjct: 357 TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRD 416

Query: 144 VKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202
           V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDPRVLH MG
Sbjct: 417 VQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMG 475

>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1 Length = 129

 Score =  149 bits (379), Expect = 7e-47
 Identities = 95/126 (75%), Positives = 111/126 (88%)

Query: 43  EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRL 102
                  KHGQFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+L
Sbjct: 4   SHHHHHHKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKL 63

Query: 103 MTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162
           MTIMDSMND ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VKKMG
Sbjct: 64  MTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMG 123

Query: 163 GIKGLF 168
           GIKGLF
Sbjct: 124 GIKGLF 129

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Length = 432

 Score =  144 bits (366), Expect = 1e-41
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 6/140 (4%)

Query: 24  MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
           MGD+E L++K  ++  +  EE I+ I  G+FTL ++  Q + I  MG   +I+ MIPGF 
Sbjct: 295 MGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFG 354

Query: 84  QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
              + K     + A++K+   I+ SM   E +N    K       RI R+A+G+G TE +
Sbjct: 355 GA-MPKELSHLTEAKIKKYKVIISSMTKEERENPKIIK-----ASRIRRIARGSGTTEND 408

Query: 144 VKDLISQYTKFAAVVKKMGG 163
           V++++  Y      + K+  
Sbjct: 409 VREVLRYYETTKNAIDKLHH 428

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Length = 443

 Score =  138 bits (350), Expect = 2e-39
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 10/152 (6%)

Query: 24  MGDIEGLIDKVNEL--KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
           +GDI+GL++K  EL  +++  EE IE+   G+FTL+DMY Q + + KMGP  QI+ MIPG
Sbjct: 296 LGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPG 355

Query: 82  FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
                L          RLK+   IMDSM + EL N +          RI R+A+G+G + 
Sbjct: 356 LGYS-LPDDVISIGEERLKKFKVIMDSMTEEELLNPEIIN-----YSRIKRIARGSGTST 409

Query: 142 KEVKDLISQYTKFAAVVKKM--GGIKGLFKGG 171
           K+VK+L+ QY +   + K M    +  L +  
Sbjct: 410 KDVKELLDQYRQMKKLFKSMNKRQLSRLARRF 441

>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W Length = 109

 Score =  128 bits (324), Expect = 7e-39
 Identities = 85/109 (77%), Positives = 101/109 (92%)

Query: 53  QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDG 112
           QFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND 
Sbjct: 1   QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQ 60

Query: 113 ELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161
           ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VKKM
Sbjct: 61  ELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Length = 433

 Score =  126 bits (319), Expect = 8e-35
 Identities = 41/143 (28%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIK--HGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
           MGDIE +++KV    + D  ++ +E +    G+ TLRD+Y Q   + KMGP S+++  IP
Sbjct: 295 MGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIP 354

Query: 81  GFSQDFLSKGSEQESMA--RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAG 138
           G      +   +Q  +   +++R +  ++SM   EL+N +          R+ R+A+G+G
Sbjct: 355 GLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIID-----KSRMRRIAEGSG 409

Query: 139 VTEKEVKDLISQYTKFAAVVKKM 161
           +  +EV++L+  Y     ++K +
Sbjct: 410 LEVEEVRELLEWYNNMNRLLKMV 432

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Length = 433

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
           MGD+  LI+ +   +     E+L  K+K G  F L D  EQ + +  MG  + +MG +PG
Sbjct: 297 MGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPG 356

Query: 82  FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
             Q        Q     L R+  I++SM   E   R   ++      R  R+A G+G+  
Sbjct: 357 MGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKE---RAKPEIIKGS--RKRRIAAGSGMQV 410

Query: 142 KEVKDLISQYTKFAAVVKKMGG 163
           ++V  L+ Q+     ++KKM  
Sbjct: 411 QDVNRLLKQFDDMQRMMKKMKK 432

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Length = 425

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 17/144 (11%)

Query: 24  MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
           MGD+  L +KV       +  +  ++      +L D  +Q QN+ ++GPFS+I+G++PG 
Sbjct: 294 MGDVASLAEKVRAAGLEAEAPKSAKE-----LSLEDFLKQMQNLKRLGPFSEILGLLPGV 348

Query: 83  SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
            Q    K  E+     +KRL  I+ SM   E   R   ++      R  R+A+G+G + +
Sbjct: 349 PQG--LKVDEKA----IKRLEAIVLSMTPEE---RKDPRIL--NGSRRKRIAKGSGTSVQ 397

Query: 143 EVKDLISQYTKFAAVVKKMGGIKG 166
           EV   I  + +  A++K +   KG
Sbjct: 398 EVNRFIKAFEEMKALMKSLEKKKG 421

>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus} Length = 119

 Score = 75.7 bits (187), Expect = 3e-18
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 47  EKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIM 106
             ++ G FTL+D+Y+Q + + KMGP  +I  M+P      +     + +  ++K+   IM
Sbjct: 3   GTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIM 62

Query: 107 DSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGG 163
           DSM + EL N          + RI R+A G+G + +EVK+L++ Y     ++KKM  
Sbjct: 63  DSMTEEELLNPKIID-----SSRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMKK 114

>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A Length = 105

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 54  FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGE 113
           F L D  EQ + +  MG  + +MG +PG  Q        Q     L R+  I++SM   E
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKE 60

Query: 114 LDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162
               +  K       R  R+A G+G+  ++V  L+ Q+     ++KKM 
Sbjct: 61  RAKPEIIK-----GSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMK 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 49/223 (21%)

Query: 19  CGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFSQIMG 77
            G   +  ++  +    + K+D     I  +      +   + E  Q +       QI  
Sbjct: 161 SGKTWVA-LDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLEMLQKL-----LYQIDP 211

Query: 78  M-IPGFSQDFLSKGSEQESMARLKRLMT---------IMDSMNDGE----LDN------- 116
                       K       A L+RL+          ++ ++ + +     +        
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 117 -RDGA---KLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAA-----VVKK-----MG 162
            R       L +  T  I+       +T  EVK L+ +Y           V       + 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 163 GIKGLFKGGDIT-KNVNQTQMMKLNQQMA---KMMDPRVLHQM 201
            I    + G  T  N       KL   +     +++P    +M
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	100.0
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	100.0
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	100.0
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	100.0
1mfq_C	129	SRP54, signal recognition particle 54KDA protein;	100.0
2jqe_A	119	SRP54, signal recognition 54 kDa protein; AF54, st	100.0
2xxa_A	433	Signal recognition particle protein; protein trans	100.0
1hq1_A	105	Signal recognition particle protein; protein-RNA c	100.0
1qb2_A	109	SRP54, human signal recognition particle 54 KD pro	100.0
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	100.0
1dul_A	69	Signal recognition particle protein (fifty-four ho	99.95

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-53  Score=395.03  Aligned_cols=154  Identities=36%  Similarity=0.547  Sum_probs=126.5

Q ss_pred             ccccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhh--HHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcC
Q psy4310           3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDD--NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMI   79 (203)
Q Consensus         3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~--~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~mi   79 (203)
                      .+|+||||+|||+|||+||||||||.+|+||+++ +++++  ++ +.+|+.+|+|||+|||+|+++++||||+++|++||
T Consensus       275 Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~  353 (443)
T 3dm5_A          275 GEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMI  353 (443)
T ss_dssp             SSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHTTCCCHHHHHHHHHHHHTTCC--------
T ss_pred             CCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHC
Confidence            3689999999999999999999999999999999 56555  54 99999999999999999999999999999999999


Q ss_pred             CCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4310          80 PGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVK  159 (203)
Q Consensus        80 PG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~k  159 (203)
                      ||+++ .+++...+.++++++||++||+|||++||+||++   |  ++||++|||+||||+++|||+||+||++|++|||
T Consensus       354 pg~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~  427 (443)
T 3dm5_A          354 PGLGY-SLPDDVISIGEERLKKFKVIMDSMTEEELLNPEI---I--NYSRIKRIARGSGTSTKDVKELLDQYRQMKKLFK  427 (443)
T ss_dssp             ------------CCCCHHHHHHHHHHHTTSCHHHHHCGGG---C--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchh-hcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchh---c--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99985 2344445678999999999999999999999974   4  8999999999999999999999999999999999


Q ss_pred             HhcC
Q psy4310         160 KMGG  163 (203)
Q Consensus       160 km~~  163 (203)
                      +|++
T Consensus       428 ~~~~  431 (443)
T 3dm5_A          428 SMNK  431 (443)
T ss_dssp             TCCS
T ss_pred             HHcC
Confidence            9975

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=100.00  E-value=2.4e-52  Score=386.12  Aligned_cols=154  Identities=28%  Similarity=0.495  Sum_probs=126.0

Q ss_pred             ccccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCChhHHhhcC
Q psy4310           3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHG--QFTLRDMYEQFQNIMKMGPFSQIMGMI   79 (203)
Q Consensus         3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G--~Ftl~Df~~Ql~~i~kMG~l~~i~~mi   79 (203)
                      .++++|||+|+|++||+|||||||+.+|+|++++ +++++++++++|+.+|  +|||+|||+|+++|+||||+++|++||
T Consensus       274 Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~  353 (433)
T 3kl4_A          274 GEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHI  353 (433)
T ss_dssp             CSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHCCSSSGGGGTT
T ss_pred             CCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCHHHHHHhC
Confidence            3689999999999999999999999999999999 6878889999999999  999999999999999999999999999


Q ss_pred             CCCCccccc---ccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHH
Q psy4310          80 PGFSQDFLS---KGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAA  156 (203)
Q Consensus        80 PG~~~~~~~---~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~k  156 (203)
                      ||+++ .++   +...+.++++++||++||+|||++||+||++   |  ++||++|||+||||+++|||+||+||++|++
T Consensus       354 pg~~~-~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~  427 (433)
T 3kl4_A          354 PGLGI-MLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNI---I--DKSRMRRIAEGSGLEVEEVRELLEWYNNMNR  427 (433)
T ss_dssp             TCCCC-CSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGG---C--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcc-ccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchh---c--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence            99985 233   1345677899999999999999999999974   4  8999999999999999999999999999999


Q ss_pred             HHHHhc
Q psy4310         157 VVKKMG  162 (203)
Q Consensus       157 m~kkm~  162 (203)
                      |||+|+
T Consensus       428 ~~~~~~  433 (433)
T 3kl4_A          428 LLKMVK  433 (433)
T ss_dssp             HHHTC-
T ss_pred             HHHhCC
Confidence            999874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=100.00  E-value=2.5e-45  Score=338.52  Aligned_cols=145  Identities=28%  Similarity=0.399  Sum_probs=124.5

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +.++|||+|+|++||+|||||||+.+|+|++++ ++.++++++.    + +|||+|||+|++++.||||++++++||||+
T Consensus       274 e~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~----~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~  348 (425)
T 2ffh_A          274 EKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA----K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGV  348 (425)
T ss_dssp             SSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------CCCHHHHHHHHHHHHHTCCCTTGGGTSCSC
T ss_pred             CChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH----H-hcCHHHHHHHHHHhhCcCChhhhhccCCCc
Confidence            347999999999999999999999999999998 4656665554    3 999999999999999999999999999999


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      +. .     .+.+++++++|++||+|||++||+||++   |  ++||++|||+||||+++|||+||+||++|++|||+|+
T Consensus       349 ~~-~-----~~~~~~~~~~~~~i~~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~  417 (425)
T 2ffh_A          349 PQ-G-----LKVDEKAIKRLEAIVLSMTPEERKDPRI---L--NGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLE  417 (425)
T ss_dssp             SC-C-----TTSCHHHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hh-h-----ccccHHHHHHHHHHHHcCCHHHhcCccc---c--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            73 1     1256899999999999999999999974   3  8999999999999999999999999999999999998


Q ss_pred             CC
Q psy4310         163 GI  164 (203)
Q Consensus       163 ~~  164 (203)
                      +.
T Consensus       418 ~~  419 (425)
T 2ffh_A          418 KK  419 (425)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=100.00  E-value=1.9e-47  Score=358.93  Aligned_cols=195  Identities=74%  Similarity=1.122  Sum_probs=170.9

Q ss_pred             ccccccccCCchhHHhhcCCCCHHHHHHHHHhccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCCCc
Q psy4310           5 GYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQ   84 (203)
Q Consensus         5 ~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~   84 (203)
                      .+++|++|+|.+|+|+++|+||+.+|+|++++.++++++++.+|+.+|+||++||++|++++.+||++++|++||||++.
T Consensus       278 ~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~  357 (504)
T 2j37_W          278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGT  357 (504)
T ss_dssp             STTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSC
T ss_pred             chhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccch
Confidence            47899999999999999999999999999998755556778899999999999999999999999999999999999985


Q ss_pred             ccccccchhhHHHHHHHHHHHHhCCChHhhcC---CccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          85 DFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        85 ~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      ..++....+.+++.++|+++||+|||++||+|   |.   +|..++||++|||+||||+++|||+||+||++|++|||+|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~---~~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~  434 (504)
T 2j37_W          358 DFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM  434 (504)
T ss_dssp             GGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHH---HHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCC
T ss_pred             hhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCc---ccCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            21233334567899999999999999999999   86   4434789999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccCccHHHHHHHHHHHHhcCCHHHHhhcC
Q psy4310         162 GGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG  202 (203)
Q Consensus       162 ~~~~g~~~~~~~~~~~~~~~~~~~~~qm~~~~~p~~~~~mg  202 (203)
                      ++.+++++++.++...+++++.+.++||++++||+++++||
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (504)
T 2j37_W          435 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMG  475 (504)
T ss_dssp             SCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHH
T ss_pred             cccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcC
Confidence            98776666666666666666667788999999999999986

>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1

Probab=100.00  E-value=1e-43  Score=281.97  Aligned_cols=115  Identities=77%  Similarity=1.218  Sum_probs=97.7

Q ss_pred             HHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcC---Ccccccccc
Q psy4310          49 IKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSK  125 (203)
Q Consensus        49 i~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~  125 (203)
                      -..|+|||+|||+|+++|+||||+++|++||||+++..++....+.+++++++|+|||+|||++||+|   |+   ||..
T Consensus        10 ~~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~---ii~~   86 (129)
T 1mfq_C           10 HKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSK   86 (129)
T ss_dssp             -CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHH---HHHH
T ss_pred             cccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcc---cccC
Confidence            35789999999999999999999999999999998521333445678999999999999999999999   96   4434


Q ss_pred             CchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy4310         126 QTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKG  166 (203)
Q Consensus       126 ~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~~~~g  166 (203)
                      ++||++|||+||||+|+|||+||+||++|++|||+|++.+|
T Consensus        87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~~~~  127 (129)
T 1mfq_C           87 QPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG  127 (129)
T ss_dssp             CTHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred             ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            78999999999999999999999999999999999987554

>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.7e-44  Score=283.25  Aligned_cols=112  Identities=34%  Similarity=0.615  Sum_probs=99.1

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCC-CCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccc
Q psy4310          46 IEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP-GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFS  124 (203)
Q Consensus        46 ~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miP-G~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~  124 (203)
                      ++|+.+|+|||+|||+|+++|+||||+++|++||| |++. .++..+.+.+++++++|+|||+|||++||+||++   | 
T Consensus         2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~-~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~i---i-   76 (119)
T 2jqe_A            2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGL-KVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKI---I-   76 (119)
T ss_dssp             ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCS-SCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGG---C-
T ss_pred             hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhh-ccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhh---c-
Confidence            36899999999999999999999999999999999 9975 2332334467899999999999999999999974   4 


Q ss_pred             cCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy4310         125 KQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGG  163 (203)
Q Consensus       125 ~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~~  163 (203)
                       ++||++|||+||||+|+|||+||+||+++++|||+|++
T Consensus        77 -~~SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~  114 (119)
T 2jqe_A           77 -DSSRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMKK  114 (119)
T ss_dssp             -CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             -CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence             89999999999999999999999999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=100.00  E-value=9.1e-43  Score=321.19  Aligned_cols=154  Identities=27%  Similarity=0.421  Sum_probs=131.1

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCChhHHhhcCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHG-QFTLRDMYEQFQNIMKMGPFSQIMGMIPG   81 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G-~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG   81 (203)
                      .++++|++|+|++||+||+|+||+.+|+|++++ +++++++++.+|+.+| +||++||++|++++.+|||++++++||||
T Consensus       277 e~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg  356 (433)
T 2xxa_A          277 EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPG  356 (433)
T ss_dssp             SSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC---
T ss_pred             CCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcC
Confidence            356999999999999999999999999999998 4777789999999999 89999999999999999999999999999


Q ss_pred             CCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      ++. ......+..++++++++++||+|||++||+||+++     ++||++|||+||||+++|||+||+||++|++|||+|
T Consensus       357 ~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~-----~~sr~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~  430 (433)
T 2xxa_A          357 MGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII-----KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM  430 (433)
T ss_dssp             -------------CHHHHHHHHHHHHTSCHHHHHCGGGC-----CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cch-hhhhhhccccHHHHHHHHHHHHcCCHHHhcCcccc-----CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            975 22122222578899999999999999999999743     899999999999999999999999999999999999


Q ss_pred             cC
Q psy4310         162 GG  163 (203)
Q Consensus       162 ~~  163 (203)
                      ++
T Consensus       431 ~~  432 (433)
T 2xxa_A          431 KK  432 (433)
T ss_dssp             C-
T ss_pred             cC
Confidence            75

>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A

Probab=100.00  E-value=2.1e-43  Score=271.70  Aligned_cols=105  Identities=29%  Similarity=0.481  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHH
Q psy4310          53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITR  132 (203)
Q Consensus        53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~R  132 (203)
                      +|||+|||+|+++|+||||+++|++||||+++ .......+.+++++++|+|||+|||++||+||++   |  ++||++|
T Consensus         1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~-~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~i---i--~~SR~~R   74 (105)
T 1hq1_A            1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEI---I--KGSRKRR   74 (105)
T ss_dssp             CCCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCc-ccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhh---c--CHHHHHH
Confidence            59999999999999999999999999999985 2222334567899999999999999999999974   3  8999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy4310         133 VAQGAGVTEKEVKDLISQYTKFAAVVKKMGG  163 (203)
Q Consensus       133 IA~GSG~~~~eVn~Llkq~~~m~km~kkm~~  163 (203)
                      ||+||||+|+|||+||+||+++++|||+|++
T Consensus        75 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~  105 (105)
T 1hq1_A           75 IAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK  105 (105)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999864

>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W

Probab=100.00  E-value=2.9e-42  Score=266.93  Aligned_cols=106  Identities=76%  Similarity=1.194  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcC---CccccccccCchh
Q psy4310          53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSKQTGR  129 (203)
Q Consensus        53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~~~SR  129 (203)
                      +|||+|||+|+++|+||||+++|++||||+++.+++....+.+++++++|+|||+|||++||+|   |+   ||..++||
T Consensus         1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~---ii~~~~SR   77 (109)
T 1qb2_A            1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSKQPGR   77 (109)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHH---HHHHSTHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCcc---ccccchHH
Confidence            5999999999999999999999999999998522133445678999999999999999999999   96   44222899


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310         130 ITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus       130 ~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      ++|||+||||+|+|||+||+||++|++|||+|
T Consensus        78 ~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m  109 (109)
T 1qb2_A           78 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKM  109 (109)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=100.00  E-value=3e-40  Score=304.38  Aligned_cols=151  Identities=30%  Similarity=0.518  Sum_probs=118.9

Q ss_pred             cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310           4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF   82 (203)
Q Consensus         4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~   82 (203)
                      +++++|++|+|.+|+|+++|+||+.+|+|++++ +++++ +++.+|+.+|+||++||++|++++.||||+++|++||||+
T Consensus       275 e~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~  353 (432)
T 2v3c_C          275 EGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF  353 (432)
T ss_dssp             SSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred             ccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence            467999999999999999999999999999998 56555 7889999999999999999999999999999999999998


Q ss_pred             CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      +. ..+....+.+++++++|++||+|||++||+||++   +  ++||++|||+|||++++|||+||+||++|++||+++
T Consensus       354 ~~-~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~---i--~~sr~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~  426 (432)
T 2v3c_C          354 GG-AMPKELSHLTEAKIKKYKVIISSMTKEERENPKI---I--KASRIRRIARGSGTTENDVREVLRYYETTKNAIDKL  426 (432)
T ss_dssp             -----------CCHHHHHHHHHHHTTSCHHHHSSCTT---C--CHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             cc-ccchhhhcccHHHHHHHHHHHHhCCHHHhhCccc---c--CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            74 2222223346789999999999999999999974   3  899999999999999999999999999999998765

>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C

Probab=99.95  E-value=7.3e-29  Score=177.77  Aligned_cols=64  Identities=27%  Similarity=0.401  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          93 QESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        93 ~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      +.+++++++|++||+||||+||+||++   |  ++||++|||+||||+++|||+||+||++|++|||+|
T Consensus         6 ~~~e~~lkr~~aII~SMT~~Er~nP~i---i--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m   69 (69)
T 1dul_A            6 FLEQKVLVRMEAIINSMTMKERAKPEI---I--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM   69 (69)
T ss_dssp             HHHCCHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHcCCHHHHhCccc---c--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            456889999999999999999999974   4  799999999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1qb2a_	107	a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId:	4e-27
d1qzxa2	138	a.36.1.1 (A:295-432) Signal sequence binding prote	4e-21
d1hq1a_	104	a.36.1.1 (A:) Signal sequence binding protein Ffh	1e-16
d2ffha2	100	a.36.1.1 (A:319-418) Signal sequence binding prote	1e-15
d1dula_	69	a.36.1.1 (A:) Signal sequence binding protein Ffh	3e-06

>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: SRP54M
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 4e-27
 Identities = 83/107 (77%), Positives = 99/107 (92%)

Query: 53  QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDG 112
           QFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND 
Sbjct: 1   QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQ 60

Query: 113 ELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVK 159
           ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VK
Sbjct: 61  ELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVK 107

>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 82.7 bits (204), Expect = 4e-21
 Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 25  GDIEGLIDKVNEL-KLDDNEELIEKIK--HGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
           GDIE +++KV  L + D  ++ +E +    G+ TLRD+Y Q   + KMGP S+++  IPG
Sbjct: 1   GDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPG 60

Query: 82  FSQDFLSKGSEQESMA--RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGV 139
                 +   +Q  +   +++R +  ++SM   EL+N +          R+ R+A+G+G+
Sbjct: 61  LGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIID-----KSRMRRIAEGSGL 115

Query: 140 TEKEVKDLISQYTKFAAVVKKM 161
             +EV++L+  Y     ++K +
Sbjct: 116 EVEEVRELLEWYNNMNRLLKMV 137

>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]} Length = 104

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

 Score = 69.9 bits (171), Expect = 1e-16
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 54  FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGE 113
           F L D  EQ + +  MG  + +MG +PG  Q        Q     L R+  I++SM   E
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKE 60

Query: 114 LDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161
                 AK    +  R  R+A G+G+  ++V  L+ Q+     ++KKM
Sbjct: 61  -----RAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103

>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 100

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 54  FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGE 113
            +L D  +Q QN+ ++GPFS+I+G++PG  Q        +     +KRL  I+ SM    
Sbjct: 2   LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL------KVDEKAIKRLEAIVLSMTP-- 53

Query: 114 LDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162
            + R   ++ +    R  R+A+G+G + +EV   I  + +  A++K + 
Sbjct: 54  -EERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLE 99

>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]} Length = 69

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 98  RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAV 157
            L R+  I++SM   E    +  K       R  R+A G+G+  ++V  L+ Q+     +
Sbjct: 11  VLVRMEAIINSMTMKERAKPEIIK-----GSRKRRIAAGSGMQVQDVNRLLKQFDDMQRM 65

Query: 158 VKKM 161
           +KKM
Sbjct: 66  MKKM 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1qzxa2	138	Signal sequence binding protein Ffh {Archaeon Sulf	100.0
d1qb2a_	107	SRP54M {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hq1a_	104	Signal sequence binding protein Ffh {Escherichia c	100.0
d2ffha2	100	Signal sequence binding protein Ffh {Thermus aquat	100.0
d1dula_	69	Signal sequence binding protein Ffh {Escherichia c	99.93

>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=8.6e-49  Score=312.57  Aligned_cols=133  Identities=29%  Similarity=0.575  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHh-ccHhhHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCChhHHhhcCCCCCccccc--ccchhhHHHHH
Q psy4310          25 GDIEGLIDKVNE-LKLDDNEELIEKIK--HGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLS--KGSEQESMARL   99 (203)
Q Consensus        25 GDi~~Liek~~~-v~~~~~~~l~~ki~--~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~--~~~~~~~~~~l   99 (203)
                      |||.||||+|++ +++++++++.+++.  +|+|||+|||+||++|.||||+++|++||||+++...+  ..+.+.+++++
T Consensus         1 GDv~sLvEk~~~~~~~e~~~~~~~~~~~~~G~Ftl~Df~~Q~~~i~kmG~l~~im~miPG~~~~~~~~~~~~~~~~e~~l   80 (138)
T d1qzxa2           1 GDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKI   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSTTHHHHHHHHHSCSSHHHHTTCCCSSCSCSCSTTSCSSCCSSTH
T ss_pred             CChHHHHHHHHHhhcHHHHHHHHHHHHhccCCccHHHHHHHHHHHHccCcHHHHHHHHHhhcccccchhhhcccccHHHH
Confidence            899999999999 47788888888886  69999999999999999999999999999999863222  12233468899


Q ss_pred             HHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310         100 KRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus       100 k~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      ++|++||||||++||+||++   |  ++||++|||+||||+++|||+||++|++|++|+|++.
T Consensus        81 k~~~~Ii~SMT~~Er~~P~i---l--~~SR~~RIA~GSG~~~~eV~~Llkqf~~m~kmmK~mk  138 (138)
T d1qzxa2          81 RRWLAALNSMTYKELENPNI---I--DKSRMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK  138 (138)
T ss_dssp             HHHTHHHHSCBHHHHHCGGG---C--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHccHHHHcCccc---c--chHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999974   4  7999999999999999999999999999999999874

>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: SRP54M
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-43  Score=266.93  Aligned_cols=107  Identities=78%  Similarity=1.212  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHH
Q psy4310          53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITR  132 (203)
Q Consensus        53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~R  132 (203)
                      +|||+|||+|+++|.||||+++|++||||+++...+....+.+++++++|++||+|||++||+||++++++..++||++|
T Consensus         1 qFtl~Df~~Q~~~i~KMG~l~~ll~miPG~~~~~~~~~~~~~~~~~lk~~~~ii~SMT~~Er~~p~~~~~~~~~~sR~~R   80 (107)
T d1qb2a_           1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR   80 (107)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhccHhhcCCCchhhhhccChHHHHH
Confidence            59999999999999999999999999999986455556667788999999999999999999999855555568999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4310         133 VAQGAGVTEKEVKDLISQYTKFAAVVK  159 (203)
Q Consensus       133 IA~GSG~~~~eVn~Llkq~~~m~km~k  159 (203)
                      ||+||||+++|||+||++|++|++|+|
T Consensus        81 IA~GSG~~~~eVn~Llkqf~~m~kmmK  107 (107)
T d1qb2a_          81 VARGSGVSTRDVQELLTQYTKFAQMVK  107 (107)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999975

>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-42  Score=264.84  Aligned_cols=103  Identities=29%  Similarity=0.491  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHh
Q psy4310          54 FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRV  133 (203)
Q Consensus        54 Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RI  133 (203)
                      |||+|||+|+++|.||||+++|++||||+++ ..+....+.+++++++|+|||+|||++||+||+++     ++||++||
T Consensus         2 Ftl~Df~~Q~~~i~kMG~l~~im~miPG~~~-~~~~~~~~~~e~~lk~~~aIi~SMT~~Er~~p~~l-----~~SR~~RI   75 (104)
T d1hq1a_           2 FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII-----KGSRKRRI   75 (104)
T ss_dssp             CCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC-----CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCHHHHHHHhhcccc-hhhhhhhhhHHHHHHHHHHHHHhcCHHHhhccccc-----cccHHHHH
Confidence            9999999999999999999999999999986 33444455668899999999999999999999743     89999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310         134 AQGAGVTEKEVKDLISQYTKFAAVVKKMG  162 (203)
Q Consensus       134 A~GSG~~~~eVn~Llkq~~~m~km~kkm~  162 (203)
                      |+||||+++|||+||++|++|++|+++|.
T Consensus        76 A~GSG~~~~eV~~Llkqf~~m~kmmk~mk  104 (104)
T d1hq1a_          76 AAGSGMQVQDVNRLLKQFDDMQRMMKKMK  104 (104)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HccCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999874

>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=2.3e-41  Score=256.48  Aligned_cols=100  Identities=31%  Similarity=0.589  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHH
Q psy4310          53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITR  132 (203)
Q Consensus        53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~R  132 (203)
                      .|||+|||+|++++.||||+++|++||||++...      ..+++++++|++||+|||++||+||++   |  ++||++|
T Consensus         1 eFtl~Df~~Ql~~i~kmG~l~~i~~miPG~~~~~------~~~e~~lkr~~~Ii~SMT~~Er~~p~l---l--~~sR~~R   69 (100)
T d2ffha2           1 ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL------KVDEKAIKRLEAIVLSMTPEERKDPRI---L--NGSRRKR   69 (100)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSCCT------TSCHHHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhcCHHHHHhhCcccchhh------hhhHHHHHHHHHHHHHcCHhhccCchh---c--cHHHHHH
Confidence            5999999999999999999999999999998521      245789999999999999999999974   3  8999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy4310         133 VAQGAGVTEKEVKDLISQYTKFAAVVKKMGG  163 (203)
Q Consensus       133 IA~GSG~~~~eVn~Llkq~~~m~km~kkm~~  163 (203)
                      ||+|||||++|||+||++|+++++|+++|++
T Consensus        70 IA~GSG~~~~eV~~Llkqf~~m~~mmk~m~K  100 (100)
T d2ffha2          70 IAKGSGTSVQEVNRFIKAFEEMKALMKSLEK  100 (100)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999975

>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2e-27  Score=168.42  Aligned_cols=64  Identities=27%  Similarity=0.401  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310          93 QESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM  161 (203)
Q Consensus        93 ~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm  161 (203)
                      ..+++.|++++|||+|||++||+||++   |  ++||++|||+||||+++|||+||+||+++++||++|
T Consensus         6 ~~dek~l~r~eaiI~SMT~~ER~~P~l---l--~~SR~~RIA~GSG~~~~eVn~Llkqf~~m~kmmk~m   69 (69)
T d1dula_           6 FLEQKVLVRMEAIINSMTMKERAKPEI---I--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM   69 (69)
T ss_dssp             HHHCCHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHhChHh---h--chhHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            356789999999999999999999974   3  799999999999999999999999999999999985