Psyllid ID: psy4316

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MQVGIRFDNELDYFSSGVGTESVNGKTENRIKDDDNEDEEEKQNYMERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIPN
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHcccccccEEEEEEEcccccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHccccHHHHHHHHcccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccEEEEEccccccccccccccccccccccHHHHHHcccccccHHcccHHHHcEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHccccccccccHHHHHccccEEEEEEccccHHHHHHHHHccccHHHHHHcccccEEcccEEEccccEEEccccHHHHHHHHHHHccHHHccccccccccccEcccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccEEEccc
Coil and Loop (DISEMBL)
mqvgirfdneldyfssgvgtesvngktenrikdddnedeeekqnymergphsfsktgawsadnfdgdvadlRHSEFRSWFYRQCLCMYHGieyvynglnpikvskwplppplpiwslsgsssgsvtlpdstpnivqerseaesvkldgdevpapivqnlhCYEYTLAlvkphafrhvEDIEQTIQEKGFTIVKkktfkftpeQAAEFFITreerdpvkvprLVCYMVSGPVRVMVLAKQKAIRRWLHlmgpvdpdkakriyplslrakygvNDIMNAIYGSRNEEEAARDIRFFFKDiiiepsnamesdiscepssnsflahKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLlendpfspklkpcdlvkipn
Flexible Loop (DISEMBL)
mqvgirfdneldyfssgvgtesvngktenrikdddnedEEEKQNYMERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEffitreerdpvkvpRLVCYMVSGPVRVMVLAKQKAIRRWlhlmgpvdpdkakRIYPLslrakygvnDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLEndpfspklkpcdlvkipn
Low Complexity Region (SEG)
MQVGIRFDNELDYFSSGVGTESVNGKTENRIKdddnedeeeKQNYMERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIkvskwplppplpiwslsgsssgsvtlpdstPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEkgftivkkktfkftPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAArdirfffkdiiiEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIPN
Disordered region (IsUnstruct)
**********************************************************WSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWS**********************************VPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII******************FLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSP*L**********
Disordered Region (DISOPRED)
***GIRFDNELDYFSSGVGTESVNGKTENRIKDDDNEDEEEKQNYMERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSG***************************************LHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPC*LVK***
Disordered Region (DISEMBL)
MQVGIRFDNELDYFSSGVGT**************************ERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSG***********TPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIPN
Disordered Region (DISPRO)
MQVGIRFDNELDYFS********************NEDEE*KQ*Y**R*PHSF*********NFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSG******************************EVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPCDLVK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVGIRFDNELDYFSSGVGTESVNGKTENRIKDDDNEDEEEKQNYMERGPHSFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
P56597	212	Nucleoside diphosphate ki	yes	N/A	0.503	0.896	0.404	1e-36
Q99MH5	211	Nucleoside diphosphate ki	yes	N/A	0.503	0.900	0.390	6e-35
P90666	837	Thioredoxin domain-contai	N/A	N/A	0.435	0.195	0.336	3e-18
O75414	186	Nucleoside diphosphate ki	no	N/A	0.381	0.774	0.348	2e-17
Q95YJ5	653	Thioredoxin domain-contai	no	N/A	0.352	0.203	0.368	2e-17
O88426	175	Nucleoside diphosphate ki	yes	N/A	0.355	0.765	0.374	3e-17
Q8N427	588	Thioredoxin domain-contai	no	N/A	0.371	0.238	0.342	3e-17
Q715S9	587	Thioredoxin domain-contai	no	N/A	0.344	0.221	0.377	4e-17
Q715T0	586	Thioredoxin domain-contai	no	N/A	0.344	0.221	0.392	5e-17
O88425	189	Nucleoside diphosphate ki	no	N/A	0.374	0.746	0.356	6e-17

>sp|P56597|NDK5_HUMAN Nucleoside diphosphate kinase homolog 5 OS=Homo sapiens GN=NME5 PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 119/205 (58%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP      E+I+  I   GFTIV+++  + +PEQ + F++  E+   +  P L
Sbjct: 13  EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYV--EKYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  WL L+GP +   AK  +P SLRA YG +D+ NA++GS 
Sbjct: 71  TAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSN 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A R+IRF F ++I+EP    +             A K YL   + PTL +GL EL 
Sbjct: 131 DFAAAEREIRFMFPEVIVEPIPIGQ-------------AAKDYLNLHIMPTLLEGLTELC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA    W  +WLL+N+P  PKL
Sbjct: 178 KQKPADPLIWLADWLLKNNPNKPKL 202

Does not seem to have NDK kinase activity. Confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes including Gpx5. May play a role in spermiogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species.
Homo sapiens (taxid: 9606)

>sp|Q99MH5|NDK5_MOUSE Nucleoside diphosphate kinase homolog 5 OS=Mus musculus GN=Nme5 PE=2 SV=2

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP      E+I+  I   GFTI++++    +PE  + F++  E+   +  P L
Sbjct: 13  EKTLALIKPDVVDKEEEIQDIILGSGFTIIQRRKLHLSPEHCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  W  LMGP +   AK  +P SLRA YG +++ NA++GS 
Sbjct: 71  TAYMSSGPLVAMILARHKAISYWKELMGPSNSLVAKETHPDSLRAIYGTDELRNALHGSN 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   + R+IRF F  +IIEP    +             A K Y+  +V PTL +GL EL 
Sbjct: 131 DFAASEREIRFMFPAVIIEPIPIGQ-------------AAKDYINLYVAPTLLQGLTELC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KP   Y W  +WL++N+P  PKL
Sbjct: 178 KEKPPDPYLWLADWLMKNNPNKPKL 202

Does not seem to have NDK kinase activity. Confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes including Gpx5. May play a role in spermiogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species.

Mus musculus (taxid: 10090)

>sp|P90666|TXND3_HELCR Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris crassispina GN=NME8 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 23/187 (12%)

Query: 161 CYEYTLALVKPHAFR-HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
             E TLAL++P A + H +++ Q IQE GF +  +K  + T +QA EF+  +E+      
Sbjct: 354 TIEKTLALIRPSALKDHKDEMLQKIQEAGFEVCLQKMVQLTEDQAKEFY--KEQEGTPHF 411

Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDI-MNAI 278
             L+  M SG V  + LAK+ AI+ W   +GP   D+AK   P SLRA+Y + D  +N +
Sbjct: 412 EDLIREMTSGEVLALGLAKESAIQSWREFIGPTTIDEAKEKAPDSLRAQYSIPDTQVNVV 471

Query: 279 YGSRNEEEAARDIRFFF-----------------KDIIIEPSNAMESDISCEPSS--NSF 319
           +GS + + A +++ FFF                 K+ IIE       +IS +     N  
Sbjct: 472 HGSDSVDTAEKELGFFFPKQTTLAVIKPDAAGEHKEAIIEKIKEAGFNISLQRDVELNKE 531

Query: 320 LAHKIYL 326
           LA K+YL
Sbjct: 532 LASKLYL 538

May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components.

Anthocidaris crassispina (taxid: 7629)

>sp|O75414|NDK6_HUMAN Nucleoside diphosphate kinase 6 OS=Homo sapiens GN=NME6 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 5/149 (3%)

Query: 153 APIVQNLHCYEYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 209
           A I+++    + TLAL+KP A  H   +E + Q I    F IV+ +   +  E    F+ 
Sbjct: 2   ASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFY- 60

Query: 210 TREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKY 269
            RE        RLV +M SGP+R  +LA + AI+ W  LMGP    +A+ + P S+R  +
Sbjct: 61  -REHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSF 119

Query: 270 GVNDIMNAIYGSRNEEEAARDIRFFFKDI 298
           G+ D  N  +GS +   A+R+I  FF D 
Sbjct: 120 GLTDTRNTTHGSDSVVSASREIAAFFPDF 148

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Inhibitor of p53-induced apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|Q95YJ5|TXND3_CIOIN Thioredoxin domain-containing protein 3 homolog OS=Ciona intestinalis GN=CiIC3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 8/141 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           + T+AL+KP   +   V++I Q I E G  ++  +    T E+A +F+  +EE +     
Sbjct: 156 QITVALIKPDVVQNGQVDEILQKISEAGIEVLADEERMLTVEEARDFYKNKEEEE--YFD 213

Query: 221 RLVCYMVSGPVRVMVLAK----QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 276
           +L+ Y+ SGP RV+VL K    +  +  W  ++GP D   AK   P SLRA YG +   N
Sbjct: 214 QLIDYVTSGPCRVLVLTKGESGEGVVTLWRDIIGPFDAAVAKEENPDSLRAIYGTDATSN 273

Query: 277 AIYGSRNEEEAARDIRFFFKD 297
           A++GS + EEA R++ FFF D
Sbjct: 274 ALHGSSSTEEAVRELGFFFPD 294

May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components.

Ciona intestinalis (taxid: 7719)

>sp|O88426|NDK6_RAT Nucleoside diphosphate kinase 6 (Fragment) OS=Rattus norvegicus GN=Nme6 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 163 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
           + TLAL+KP A  H   +E + Q I    F IV+ +   + PE    F+  RE       
Sbjct: 1   QLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWKPEDCRRFY--REHEGRFFY 58

Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
            RLV +M SGP+R  +LA + AI+ W  LMGP    +A+ I P S+R   G+ D  N  +
Sbjct: 59  QRLVEFMTSGPIRAYILAHKDAIQLWRTLMGPTRVFRARHIAPDSIRGSLGLTDTRNTTH 118

Query: 280 GSRNEEEAARDIRFFFKDI 298
           GS +   A+R+I  FF D 
Sbjct: 119 GSDSVVSASREIAAFFPDF 137

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|Q8N427|TXND3_HUMAN Thioredoxin domain-containing protein 3 OS=Homo sapiens GN=NME8 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 3/143 (2%)

Query: 156 VQNLHCYEYTLALVKPHAF-RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREER 214
           +Q+    + TL L+KPHA     E I + ++E GF + + K    TPEQ  + +     +
Sbjct: 444 IQHFFPLQSTLGLIKPHATSEQREQILKIVKEAGFDLTQVKKMFLTPEQIEKIYPKVTGK 503

Query: 215 DPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDI 274
           D  K   L+  +  GP  VM+L K  A+  W  LMGP DP++AK + P S+RA++G++ +
Sbjct: 504 DFYK--DLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKL 561

Query: 275 MNAIYGSRNEEEAARDIRFFFKD 297
            N ++G+ N  EA   +   F+D
Sbjct: 562 KNIVHGASNAYEAKEVVNRLFED 584

Probably required during the final stages of sperm tail maturation in the testis and/or epididymis, where extensive disulfide bonding of fibrous sheath (FS) proteins occurs. May be involved in the reduction of disulfide bonds within the sperm FS components. In vitro, it has neither NDP kinase nor reducing activity on disulfide bonds.

Homo sapiens (taxid: 9606)

>sp|Q715S9|TXND3_RAT Thioredoxin domain-containing protein 3 OS=Rattus norvegicus GN=Nme8 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 5/135 (3%)

Query: 165 TLALVKPHAFRHVEDIE--QTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           TLAL+KPH   H E +E  + I++  F + + K    TPE A++ +     +D  K   +
Sbjct: 451 TLALIKPHV-SHKERMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDFYK--NV 507

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           +  + SG   VM+L K  A+  W  +MGPVDP++AK + P SLRA+YG++ + NA++G+ 
Sbjct: 508 LDVLSSGMSVVMILTKWNAVGEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVHGAS 567

Query: 283 NEEEAARDIRFFFKD 297
           N  EAA  I   F +
Sbjct: 568 NMSEAATAISNVFTE 582

Probably required during the final stages of sperm tail maturation in the testis and/or epididymis, where extensive disulfide bonding of fibrous sheath (FS) proteins occurs. May be involved in the reduction of disulfide bonds within the sperm FS components. In vitro, it has neither NDP kinase nor reducing activity on disulfide bonds.

Rattus norvegicus (taxid: 10116)

>sp|Q715T0|TXND3_MOUSE Thioredoxin domain-containing protein 3 OS=Mus musculus GN=Nme8 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 5/135 (3%)

Query: 165 TLALVKPHAFRHVEDIE--QTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           TLAL+KPH   H E +E  +TI+E GF +   K    TPE A + +     +D  K   +
Sbjct: 450 TLALIKPHV-THKERMEILKTIKEAGFELTLMKEMHLTPEHANKIYFKITGKDFYK--NV 506

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           +  +  G   VMVL K  A+  W  ++GPVDP++AK + P SLRAKYG++ + NA++G+ 
Sbjct: 507 LEVLSLGMSLVMVLTKWNAVAEWRRMVGPVDPEEAKLLSPESLRAKYGLDILRNAVHGAS 566

Query: 283 NEEEAARDIRFFFKD 297
           N  EA+  I   F +
Sbjct: 567 NFSEASEIISNVFTE 581

Probably required during the final stages of sperm tail maturation in the testis and/or epididymis, where extensive disulfide bonding of fibrous sheath (FS) proteins occurs. May be involved in the reduction of disulfide bonds within the sperm FS components. In vitro, it has neither NDP kinase nor reducing activity on disulfide bonds.

Mus musculus (taxid: 10090)

>sp|O88425|NDK6_MOUSE Nucleoside diphosphate kinase 6 OS=Mus musculus GN=Nme6 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 5/146 (3%)

Query: 155 IVQNLHCYEYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITR 211
           I+++    + TLAL+KP A  H   +E + Q I    F IV+ +  ++  E    F+  R
Sbjct: 4   ILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRTRELQWKLEDCRRFY--R 61

Query: 212 EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV 271
           E        RLV +M SGP+R  +LA + AI+ W  LMGP    +A+ I P S+R   G+
Sbjct: 62  EHEGRFFYQRLVEFMTSGPIRAYILAHKDAIQLWRTLMGPTRVFRARYIAPDSIRGSLGL 121

Query: 272 NDIMNAIYGSRNEEEAARDIRFFFKD 297
            D  N  +GS +   A+R+I  FF D
Sbjct: 122 TDTRNTTHGSDSVVSASREIAAFFPD 147

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
395504589	218	PREDICTED: nucleoside diphosphate kinase	0.503	0.871	0.434	4e-38
126290644	217	PREDICTED: nucleoside diphosphate kinase	0.503	0.875	0.414	5e-37
291387400	211	PREDICTED: non-metastatic cells 5, prote	0.503	0.900	0.404	1e-35
443731813	217	hypothetical protein CAPTEDRAFT_177417 [	0.506	0.880	0.412	1e-35
260803201	207	hypothetical protein BRAFLDRAFT_61845 [B	0.506	0.922	0.412	2e-35
345318779	220	PREDICTED: nucleoside diphosphate kinase	0.527	0.904	0.397	2e-35
296192829	212	PREDICTED: nucleoside diphosphate kinase	0.503	0.896	0.414	2e-35
50540094	217	nucleoside diphosphate kinase homolog 5	0.503	0.875	0.395	2e-35
209735268	217	Nucleoside diphosphate kinase homolog 5	0.503	0.875	0.385	2e-35
403285359	212	PREDICTED: nucleoside diphosphate kinase	0.503	0.896	0.409	3e-35

>gi|395504589|ref|XP_003756630.1| PREDICTED: nucleoside diphosphate kinase homolog 5 [Sarcophilus harrisii]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 123/205 (60%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP      E+IE  I + GFTIV+++  +F+PEQ + F++  E+   +  P L
Sbjct: 13  ERTLALIKPDIVDKEEEIEDIILKSGFTIVQRRKLRFSPEQCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+  AI  WL LMGP +  KAK  +P SLRA YG +D+ NA++GS+
Sbjct: 71  TAYMSSGPLVAMILARHNAISYWLDLMGPFNSFKAKETHPDSLRAIYGTDDLRNALHGSK 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           N   A R+IRF F ++IIEP           P      A K YL  +V PTL  GL+EL 
Sbjct: 131 NFAAAEREIRFMFPEVIIEPI----------PIGG---AAKDYLNMYVNPTLLAGLSELC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA  + W  +WLL+N+P  P+ 
Sbjct: 178 KHKPADPFIWLADWLLKNNPNKPRF 202

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126290644|ref|XP_001375993.1| PREDICTED: nucleoside diphosphate kinase homolog 5-like [Monodelphis domestica]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 121/205 (59%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP      E+IE  I   GFTIV+++  +F+PEQ + F++  E+   +  P L
Sbjct: 13  ERTLAIIKPDIVDKEEEIEDIILNSGFTIVQRRKLRFSPEQCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+  AI  WL LMGP +  KAK  +P SLRA YG +++ NA++GS+
Sbjct: 71  TAYMSSGPLVAMILARHNAIPYWLDLMGPSNSFKAKETHPDSLRAIYGTDELRNALHGSK 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           N   A R+IRF F +++IEP  + E               + YL  +V PTL  GL EL 
Sbjct: 131 NFTAAEREIRFMFPEVVIEPIPSGE-------------GARDYLELYVNPTLLAGLTELC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA  + W  +WLL N+P  P+L
Sbjct: 178 KQKPADPFIWLADWLLTNNPNKPRL 202

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291387400|ref|XP_002710156.1| PREDICTED: non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) [Oryctolagus cuniculus]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP      E+I+  I   GFTIV+++  +F+PEQ + F++  E+   +  P L
Sbjct: 13  EKTLAIIKPDVVDKEEEIQDIILRSGFTIVQRRKLRFSPEQCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  W  L+GP +   AK  +P SLRA YG +D+ NA++GS 
Sbjct: 71  TVYMSSGPLVAMILARHKAISYWKELLGPSNSLIAKETHPDSLRAIYGTDDLRNALHGSN 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A R+IRF F  +I+EP    +             A K YL  +V PTL +GL +L 
Sbjct: 131 DFAAAEREIRFMFPKVIVEPIPVGQ-------------AAKDYLNLYVIPTLLEGLTKLC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA  + W  +WLL+N+P  PKL
Sbjct: 178 KQKPADPFIWLADWLLKNNPNKPKL 202

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443731813|gb|ELU16784.1| hypothetical protein CAPTEDRAFT_177417 [Capitella teleta]

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 15/206 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP A +H E+IE  I   GFTI++K+    TPEQA+EF++  E    +  P L
Sbjct: 19  ERTLAIIKPDAVKHAEEIEDIILNSGFTILQKRRVHLTPEQASEFYV--EHYGKLFFPSL 76

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           V YM SGPV  + LA++ AI  W  L+GP    +AK  +P SLRA YG +   N ++GS 
Sbjct: 77  VAYMSSGPVIALALARENAISHWRMLVGPTSVTEAKETHPDSLRALYGTDQQRNGLHGSD 136

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A  ++RFFF D I+EP    +             A + YL   V PTL KGL +L 
Sbjct: 137 SYTSAEWEVRFFFPDSIVEPIAVGQ-------------AARDYLARSVNPTLLKGLTQLC 183

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKLK 368
           + KP     W  +WLLEN+P  P++K
Sbjct: 184 KKKPDDPVVWLADWLLENNPNKPRVK 209

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260803201|ref|XP_002596479.1| hypothetical protein BRAFLDRAFT_61845 [Branchiostoma floridae] gi|229281736|gb|EEN52491.1| hypothetical protein BRAFLDRAFT_61845 [Branchiostoma floridae]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 15/206 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP A    E+IE  I   GFTI++K+    TPEQA++F+   E    +  P L
Sbjct: 9   ERTLALIKPDAIDKAEEIEDIILRSGFTILQKRKVHLTPEQASDFYA--EHYGKMFFPSL 66

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           V YM SGP+  MVLA+ K I  W  L+GP +  KA+  +P SLRA YG +D  NA++GS 
Sbjct: 67  VGYMSSGPIVAMVLARDKCIGYWRDLIGPTNTYKARETHPDSLRAIYGTDDQRNAVHGSD 126

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   + R++RF F D +IEP  A +             A + YL   V PTL  GL EL 
Sbjct: 127 SYSSSEREVRFMFPDSVIEPIPAGQ-------------AARDYLARHVNPTLLGGLTELC 173

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKLK 368
           + KP     W  +W++EN+P  PK++
Sbjct: 174 KQKPEDPVTWLADWMIENNPNKPKIR 199

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345318779|ref|XP_003430066.1| PREDICTED: nucleoside diphosphate kinase homolog 5-like isoform 2 [Ornithorhynchus anatinus] gi|345318781|ref|XP_001521837.2| PREDICTED: nucleoside diphosphate kinase homolog 5-like isoform 1 [Ornithorhynchus anatinus] gi|345318783|ref|XP_003430067.1| PREDICTED: nucleoside diphosphate kinase homolog 5-like isoform 3 [Ornithorhynchus anatinus]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 15/214 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP A    E+IE  I   GFTI++++  + +PEQ + F+     +  +  P L
Sbjct: 16  ERTLAVIKPDAVDKEEEIEDIILRSGFTIIQRRKLQLSPEQCSNFYAKLYGK--MFFPNL 73

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  W  LMGP D  +AK  +P SLRA YG +D+ NA++GS 
Sbjct: 74  TAYMSSGPLVAMILARDKAISYWKELMGPRDSFRAKETHPGSLRAIYGTDDLRNAVHGSD 133

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
               A ++IRF F   +IEP              ++  A + YL  +V PTL KGL EL 
Sbjct: 134 TFAAAEKEIRFMFPAAVIEP-------------ISTGAAARDYLNLYVNPTLLKGLTELC 180

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIP 376
           + KPA  + W  +WLL+N+P  P++ P   V+ P
Sbjct: 181 KHKPADPFTWLADWLLKNNPNKPRVHPQITVEEP 214

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296192829|ref|XP_002744241.1| PREDICTED: nucleoside diphosphate kinase homolog 5 [Callithrix jacchus]

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP      E+I   I   GFTIV+++    +PEQ + F++  E+   +  P L
Sbjct: 13  EKTLAVIKPDIVDKEEEIRDIILRSGFTIVQRRKLHLSPEQCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  WL L+GP +   AK  YP SLRA YG +D+ NA++GS 
Sbjct: 71  TAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETYPDSLRAIYGTDDLRNALHGSS 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A R+IRF F ++I+EP    +             A K YL  +V PTL +GL EL 
Sbjct: 131 DFAAAEREIRFMFPEVIVEPIPIGQ-------------AAKDYLNLYVMPTLLEGLTELC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA    W  +WLL+N+P  PKL
Sbjct: 178 KQKPADPLIWLADWLLKNNPNKPKL 202

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50540094|ref|NP_001002516.1| nucleoside diphosphate kinase homolog 5 [Danio rerio] gi|49903033|gb|AAH76282.1| Zgc:92812 [Danio rerio]

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 115/205 (56%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP A    ++IE  I + GFTI++K+  + +PEQ ++F+   E    +  P L
Sbjct: 18  ERTLALIKPDAIHKTDEIEDIILQSGFTILQKRRLQLSPEQCSDFYA--EHYGKLHFPHL 75

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             +M SGPV  + LA+ +AI  W  +MGPV   KA+  +P  LRA++G  D+ NA++GS 
Sbjct: 76  TAFMSSGPVVALALARDQAIATWKAIMGPVSSIKARETHPDCLRARFGTCDLRNAVHGSE 135

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
               A R+IRF F   +IEP    E             A K YL  F+ PTL  GL EL 
Sbjct: 136 TFSAAEREIRFMFPHSVIEPIPMGE-------------AAKDYLSRFINPTLLVGLTELC 182

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           ++KP   Y W  +WL+ N+P  PK+
Sbjct: 183 KIKPEDPYTWLADWLMNNNPNKPKV 207

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|209735268|gb|ACI68503.1| Nucleoside diphosphate kinase homolog 5 [Salmo salar]

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP A    E+IE  I   GFTI++K+  + +PEQ ++F+   E+   +  P L
Sbjct: 18  ERTLALIKPDAIHQAEEIEDVILRSGFTILQKRKLQLSPEQCSDFYA--EQYGKLFFPSL 75

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             +M SGP+  + LA+ +AI  W  ++GPV+  KA+  +P  LRAKYG +D+ NA++GS 
Sbjct: 76  TAFMSSGPIIALALARDQAIAHWKTVIGPVNCTKARETHPECLRAKYGTSDLRNAVHGSD 135

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A R+++F F + +IEP    E             A K YL  FV PTL  GL EL 
Sbjct: 136 SFSSAERELKFMFPNSVIEPIPMGE-------------AAKDYLGRFVSPTLLSGLTELC 182

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KP   + W  +WL+ N+P  P++
Sbjct: 183 KQKPVDPFTWLADWLVRNNPNKPQI 207

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403285359|ref|XP_003933998.1| PREDICTED: nucleoside diphosphate kinase homolog 5 [Saimiri boliviensis boliviensis]

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 118/205 (57%), Gaps = 15/205 (7%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP      E+I   I   GFTIV+++    +PEQ + F++  E+   +  P L
Sbjct: 13  EKTLAIIKPDIVDREEEIRDIILRSGFTIVQRRKLHLSPEQCSNFYV--EQYGKMFFPNL 70

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             YM SGP+  M+LA+ KAI  WL L+GP +   AK  YP SLRA YG +D+ NA++GS 
Sbjct: 71  TAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETYPDSLRAIYGTDDLRNALHGSS 130

Query: 283 NEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
           +   A R+IRF F ++I+EP    +             A K YL  +V PTL +GL +L 
Sbjct: 131 DFAAAEREIRFMFPEVIVEPIPVGQ-------------AAKDYLNLYVMPTLLEGLTKLC 177

Query: 343 RMKPAHSYEWFVNWLLENDPFSPKL 367
           + KPA    W  +WLL+N+P  PKL
Sbjct: 178 KQKPADPLIWLADWLLKNNPNKPKL 202

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
UNIPROTKB|P56597	212	NME5 "Nucleoside diphosphate k	0.527	0.938	0.359	8.4e-26
ZFIN|ZDB-GENE-040718-221	217	nme5 "non-metastatic cells 5,	0.503	0.875	0.341	8.4e-26
UNIPROTKB|E2RLI0	211	BRD8 "Uncharacterized protein"	0.503	0.900	0.360	3.6e-25
UNIPROTKB|E1BDQ6	209	NME5 "Uncharacterized protein"	0.503	0.909	0.346	2e-24
UNIPROTKB|I3LN92	212	NME5 "Uncharacterized protein"	0.503	0.896	0.351	2e-24
MGI|MGI:1922783	211	Nme5 "NME/NM23 family member 5	0.533	0.952	0.339	2e-24
UNIPROTKB|E1C8A0	210	NME5 "Uncharacterized protein"	0.506	0.909	0.325	4.3e-22
UNIPROTKB|E1BXX8	592	TXNDC3 "Uncharacterized protei	0.326	0.207	0.373	5.5e-15
TAIR|locus:2018832	181	AT1G17410 [Arabidopsis thalian	0.326	0.679	0.362	2e-14
RGD|735069	587	Nme8 "NME/NM23 family member 8	0.320	0.206	0.365	3.2e-13

UNIPROTKB|P56597 NME5 "Nucleoside diphosphate kinase homolog 5" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 77/214 (35%), Positives = 107/214 (50%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLA++KP      E+I+  I                PEQ + F++  E+   +  P L
Sbjct:    13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYV--EKYGKMFFPNL 70

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               YM SGP+  M+LA+ KAI  WL L+GP +   AK  +P SLRA YG +D+ NA++GS 
Sbjct:    71 TAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGS- 129

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
             N+  AA                 M  ++  EP      A K YL   + PTL +GL EL 
Sbjct:   130 NDFAAAEREIRF-----------MFPEVIVEPIPIGQAA-KDYLNLHIMPTLLEGLTELC 177

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKLKPCDLVKIP 376
             + KPA    W  +WLL+N+P  PKL    +V+ P
Sbjct:   178 KQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEP 211

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0009296 "flagellum assembly" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0007286 "spermatid development" evidence=ISS

GO:0007283 "spermatogenesis" evidence=TAS

GO:0009116 "nucleoside metabolic process" evidence=TAS

ZFIN|ZDB-GENE-040718-221 nme5 "non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 70/205 (34%), Positives = 97/205 (47%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLAL+KP A    ++IE  I +              PEQ ++F+   E    +  P L
Sbjct:    18 ERTLALIKPDAIHKTDEIEDIILQSGFTILQKRRLQLSPEQCSDFYA--EHYGKLHFPHL 75

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               +M SGPV  + LA+ +AI  W  +MGPV   KA+  +P  LRA++G  D+ NA++GS 
Sbjct:    76 TAFMSSGPVVALALARDQAIATWKAIMGPVSSIKARETHPDCLRARFGTCDLRNAVHGSE 135

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
                 A             EP    E             A K YL  F+ PTL  GL EL 
Sbjct:   136 TFSAAEREIRFMFPHSVIEPIPMGE-------------AAKDYLSRFINPTLLVGLTELC 182

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKL 367
             ++KP   Y W  +WL+ N+P  PK+
Sbjct:   183 KIKPEDPYTWLADWLMNNNPNKPKV 207

GO:0005524 "ATP binding" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RLI0 BRD8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 74/205 (36%), Positives = 102/205 (49%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLA++KP      E+I+  I                PE  + F++  E+   +  P L
Sbjct:    13 EKTLAIIKPDIADKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYV--EQYGKMFFPNL 70

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               YM SGP+  M+LA+ KAI  W  L+GP +   AK  +P SLRA YG +D+ NA++GS 
Sbjct:    71 TAYMSSGPLVAMILARHKAISYWKELLGPTNTLVAKETHPDSLRAIYGTDDLRNALHGS- 129

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
             N+  AA                 M  D+  EP      A K YL  +V PTL +GL  L 
Sbjct:   130 NDFAAAEREIQF-----------MFPDVIIEPIPVGQAA-KDYLNLYVTPTLLQGLTTLC 177

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKL 367
             + KPA  + W  +WLL+N+P  PKL
Sbjct:   178 KEKPADPFIWLADWLLKNNPNKPKL 202

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

UNIPROTKB|E1BDQ6 NME5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 71/205 (34%), Positives = 98/205 (47%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLA++KP      E+I+  I                PE  + F++  E+   +  P L
Sbjct:    13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYV--EQYGKMFFPNL 70

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               YM SGP+  M+LA+  AI  W  L+GP +   AK  +P SLRA YG +++ NA++GS 
Sbjct:    71 TAYMSSGPLVAMILARYNAISYWKELLGPSNSLVAKETHPDSLRAIYGTDELRNALHGSN 130

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
             +   A             EP           P      A K YL  +V PTL KGL EL 
Sbjct:   131 DFAAAEREIRFMFPAVIVEPI----------PVGQ---AAKDYLNLYVTPTLLKGLTELC 177

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKL 367
             + KPA  + W  +WLL+N+P  PKL
Sbjct:   178 KQKPADPFIWLADWLLKNNPNKPKL 202

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0009296 "flagellum assembly" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

UNIPROTKB|I3LN92 NME5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 72/205 (35%), Positives = 98/205 (47%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLA++KP      E+I+  I                PE  + F++  E+   +  P L
Sbjct:    13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYV--EQYGKMFFPNL 70

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               YM SGP+  MVLA+ KAI  W  L+GP +   AK  +P SLRA YG +++ NA++GS 
Sbjct:    71 TAYMSSGPLVAMVLARHKAISYWKELLGPSNSLIAKETHPDSLRAIYGTDELRNALHGSN 130

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
             +   A             EP           P      A K YL  +V PTL +GL EL 
Sbjct:   131 DFAAAEREIRFMFPAVITEPI----------PVGQ---AAKDYLNLYVIPTLLEGLTELC 177

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKL 367
             + KPA    W  +WLL+N+P  PKL
Sbjct:   178 KQKPADPLIWLADWLLKNNPNKPKL 202

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0009296 "flagellum assembly" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

MGI|MGI:1922783 Nme5 "NME/NM23 family member 5" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 74/218 (33%), Positives = 105/218 (48%)

Query:   150 EVPAPIVQNLHCYEYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFI 209
             EV  P+ Q ++  E TLAL+KP      E+I+  I                PE  + F++
Sbjct:     2 EVSMPLPQ-IYV-EKTLALIKPDVVDKEEEIQDIILGSGFTIIQRRKLHLSPEHCSNFYV 59

Query:   210 TREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKY 269
               E+   +  P L  YM SGP+  M+LA+ KAI  W  LMGP +   AK  +P SLRA Y
Sbjct:    60 --EQYGKMFFPNLTAYMSSGPLVAMILARHKAISYWKELMGPSNSLVAKETHPDSLRAIY 117

Query:   270 GVNDIMNAIYGSRNEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREF 329
             G +++ NA++GS +   +             EP           P      A K Y+  +
Sbjct:   118 GTDELRNALHGSNDFAASEREIRFMFPAVIIEPI----------PIGQ---AAKDYINLY 164

Query:   330 VYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSPKL 367
             V PTL +GL EL + KP   Y W  +WL++N+P  PKL
Sbjct:   165 VAPTLLQGLTELCKEKPPDPYLWLADWLMKNNPNKPKL 202

GO:0000302 "response to reactive oxygen species" evidence=NAS

GO:0003351 "epithelial cilium movement" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007286 "spermatid development" evidence=IMP;IDA

GO:0009296 "flagellum assembly" evidence=IMP

GO:0021591 "ventricular system development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0036126 "sperm flagellum" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0048515 "spermatid differentiation" evidence=IEA

UNIPROTKB|E1C8A0 NME5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 67/206 (32%), Positives = 96/206 (46%)

Query:   163 EYTLALVKPHAFRHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             E TLAL+KP      E+IE  I                PEQ + F+   ++   +  P L
Sbjct:    13 EKTLALIKPDVVAKEEEIEDLILRSGFMIVQKRKLQLSPEQCSIFYA--DQYGKMFFPNL 70

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
               YM SGP   M+LA+ +A+  W  L+GP +  KA+  +P SLRA YG +D+ N ++GS 
Sbjct:    71 AAYMSSGPSVAMILARHRAVSYWKELLGPSNSIKARMTHPHSLRAIYGTDDLRNGLHGSL 130

Query:   283 NEEEAAXXXXXXXXXXXXEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELV 342
             +   A                  M  ++  EP      A   YL   V PTL  GL  L 
Sbjct:   131 STSSAEREIRF------------MFPEVISEPIPAGQRARD-YLNLHVNPTLLAGLTALC 177

Query:   343 RMKPAHSYEWFVNWLLENDPFSPKLK 368
             + KPA    W  +WL+E++P  P+L+
Sbjct:   178 KEKPADPMTWLADWLMEHNPNKPRLQ 203

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0009296 "flagellum assembly" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

UNIPROTKB|E1BXX8 TXNDC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 47/126 (37%), Positives = 69/126 (54%)

Query:   163 EYTLALVKPHAFR-HVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPR 221
             E+TLAL+KP A + H ++I Q +++               E A +F+   E + P     
Sbjct:   455 EHTLALIKPDAAKNHKDEIMQKVKDAGFTISKVKEEALTREMATQFYKDHEGK-PF-FEE 512

Query:   222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
             LV  M  GP  +MVL K+ A++ W  LMGP DP+ AK   P S+RA++  N + NA++GS
Sbjct:   513 LVSCMTEGPSVIMVLTKENAVQEWRKLMGPTDPEVAKESCPESIRAQFAQNILSNAVHGS 572

Query:   282 RNEEEA 287
              N E A
Sbjct:   573 SNREHA 578

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

TAIR|locus:2018832 AT1G17410 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 46/127 (36%), Positives = 63/127 (49%)

Query:   163 EYTLALVKPHAF--RHVEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
             E TLA++KP      + E+I+  + E               E A+ F+     R     P
Sbjct:    33 ERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRS--FFP 90

Query:   221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
              LV YM SGPV VMVL K+ A+  W  L+GP D +KAK  +P S+RA  G N   N ++G
Sbjct:    91 HLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHG 150

Query:   281 SRNEEEA 287
             S +   A
Sbjct:   151 SDSTSSA 157

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

RGD|735069 Nme8 "NME/NM23 family member 8" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 46/126 (36%), Positives = 71/126 (56%)

Query:   165 TLALVKPHAFRHVEDIE--QTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
             TLAL+KPH   H E +E  + I++              PE A++ +     +D  K   +
Sbjct:   451 TLALIKPHV-SHKERMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDFYK--NV 507

Query:   223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             +  + SG   VM+L K  A+  W  +MGPVDP++AK + P SLRA+YG++ + NA++G+ 
Sbjct:   508 LDVLSSGMSVVMILTKWNAVGEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVHGAS 567

Query:   283 NEEEAA 288
             N  EAA
Sbjct:   568 NMSEAA 573

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007286 "spermatid development" evidence=NAS

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.4.6	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	377
cd04418	132	cd04418, NDPk5, Nucleoside diphosphate kinase homo	2e-41
smart00562	135	smart00562, NDK, Enzymes that catalyze nonsubstrat	2e-41
cd00595	133	cd00595, NDPk, Nucleoside diphosphate kinases (NDP	4e-41
cd04416	132	cd04416, NDPk_TX, NDP kinase domain of thioredoxin	4e-39
pfam00334	135	pfam00334, NDK, Nucleoside diphosphate kinase	1e-37
cd04414	135	cd04414, NDPk6, Nucleoside diphosphate kinase 6 (N	2e-34
PLN02931	177	PLN02931, PLN02931, nucleoside diphosphate kinase	2e-29
cd04413	130	cd04413, NDPk_I, Nucleoside diphosphate kinase Gro	5e-28
cd04412	134	cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d	2e-27
cd04415	131	cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d	4e-25
PRK00668	134	PRK00668, ndk, mulitfunctional nucleoside diphosph	1e-24
COG0105	135	COG0105, Ndk, Nucleoside diphosphate kinase [Nucle	9e-24
PRK14542	137	PRK14542, PRK14542, nucleoside diphosphate kinase;	2e-17
PRK14544	183	PRK14544, PRK14544, nucleoside diphosphate kinase;	2e-16
PRK14540	134	PRK14540, PRK14540, nucleoside diphosphate kinase;	2e-15
PRK14541	140	PRK14541, PRK14541, nucleoside diphosphate kinase;	3e-13
PRK14545	139	PRK14545, PRK14545, nucleoside diphosphate kinase;	2e-12
PTZ00093	149	PTZ00093, PTZ00093, nucleoside diphosphate kinase,	2e-10
pfam05186	42	pfam05186, Dpy-30, Dpy-30 motif	2e-05
PLN02619	238	PLN02619, PLN02619, nucleoside-diphosphate kinase	2e-04

>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species

 Score =  141 bits (358), Expect = 2e-41
 Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 2/134 (1%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLA++KP A    E+IE  I E GFTIV+K+  + +PEQ ++F+   E    +  P L
Sbjct: 1   ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHL 58

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           V YM SGP+  MVLA+  AI  W  L+GP +  KAK  +P SLRA YG +D+ NA++GS 
Sbjct: 59  VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSD 118

Query: 283 NEEEAARDIRFFFK 296
           +   A R+IRF F 
Sbjct: 119 SFSSAEREIRFMFP 132

It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5). Length = 132

>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

 Score =  141 bits (358), Expect = 2e-41
 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 7/140 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TLA++KP A +   + +I    + KGF IV  K  + T EQA EF+   E +      
Sbjct: 1   ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKP--FFN 58

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV  MVL  + A++ W  LMGP DP +A    P ++R  +G++   NA++G
Sbjct: 59  DLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAA---PGTIRGDFGLDIGRNAVHG 115

Query: 281 SRNEEEAARDIRFFFKDIII 300
           S + E A R+I  FF +  I
Sbjct: 116 SDSPESAEREIALFFPESEI 135

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity. Length = 135

>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

 Score =  140 bits (356), Expect = 4e-41
 Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TLAL+KP A     + +I   I++ GF IV  K    T EQA EF++  + R     P
Sbjct: 1   ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRP--FFP 58

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV  M+L K  A+  W  ++GP +P+ A+ + P SLRA +G + + NA++G
Sbjct: 59  DLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHG 118

Query: 281 SRNEEEAARDIRFFF 295
           S + E AAR+I FFF
Sbjct: 119 SDSVESAAREIAFFF 133

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic activity but also multiple divergent paralogous genes. The human genome codes for at least nine NDP kinases and can be classified into two groups, Groups I and II, according to their genomic architecture and distinct enzymatic activity. Group I isoforms (A-D) are well-conserved, catalytically active, and share 58-88% identity between each other, while Group II are more divergent, with only NDPk6 shown to be active. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. The hexamer can be viewed as trimer of dimers, while tetramers are dimers of dimers, with the dimerization interface conserved. Length = 133

>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively

 Score =  135 bits (343), Expect = 4e-39
 Identities = 60/134 (44%), Positives = 85/134 (63%), Gaps = 3/134 (2%)

Query: 163 EYTLALVKPHAFR-HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPR 221
           EYTLAL+KP A     ++I + I+E GF I+ +K    T EQA EF+   EE D      
Sbjct: 1   EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEED--YFED 58

Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
           LV +M SGP  ++VL+K+ A+  W  LMGP DP++AK   P SLRA++  + + NA++GS
Sbjct: 59  LVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGS 118

Query: 282 RNEEEAARDIRFFF 295
            + EEA ++I FFF
Sbjct: 119 SSAEEAEKEIDFFF 132

Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance. Length = 132

>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase

 Score =  131 bits (333), Expect = 1e-37
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL ++KP A     + +I    ++KGF IV  K  + T EQA E +   + + P   P
Sbjct: 1   ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGK-PF-FP 58

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV  MVL  + A+     LMG  +P +A    P ++R  + V+   NA++G
Sbjct: 59  GLVEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAA---PGTIRGDFAVSIGRNAVHG 115

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  FF +
Sbjct: 116 SDSPESAEREIALFFPE 132

Length = 135

>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues

 Score =  123 bits (310), Expect = 2e-34
 Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 5/136 (3%)

Query: 163 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
           + TLAL+KP A  H   +E + Q I   GFTIV+KK  ++T E A  F+   E +     
Sbjct: 1   QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFY--AEHKGKFFY 58

Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
            RLV +M SGP   ++LA + AI+ W  LMGP    +A+   P S+R  YG+ D  NA +
Sbjct: 59  DRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATH 118

Query: 280 GSRNEEEAARDIRFFF 295
           GS +   A R+I  FF
Sbjct: 119 GSDSPASAQREIALFF 134

NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors. Length = 135

>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein

 Score =  111 bits (279), Expect = 2e-29
 Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TLA++KP      + E I++ I E GF+IVK+ T +   ++A+ F+     R     P
Sbjct: 30  ERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRS--FFP 87

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV YM SGPV VMVL K+ A+  W  L+GP D  KAK  +P S+RA  G++   N ++G
Sbjct: 88  SLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHG 147

Query: 281 SRNEEEAARDIRFFFKDI 298
           S + E A R+I FFF D+
Sbjct: 148 SDSPESAEREISFFFGDV 165

Length = 177

>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

 Score =  106 bits (267), Expect = 5e-28
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL ++KP   +   + +I    + KG  IV  K  + T E A E +   + + P   P
Sbjct: 1   ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGK-PFF-P 58

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV  MVL  + A++    LMG  +P  A    P ++R  + ++   N ++G
Sbjct: 59  ELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA---PGTIRGDFALSIGRNIVHG 115

Query: 281 SRNEEEAARDIRFFF 295
           S + E A R+I  +F
Sbjct: 116 SDSVESAEREIALWF 130

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis. Length = 130

>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

 Score =  105 bits (263), Expect = 2e-27
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 165 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV-PR 221
           T+ ++KPHA  H  + +I Q I ++GF I   + F  T   A EF      +  V   P 
Sbjct: 3   TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVY--KGVVPELPA 60

Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
           +V  + SGP   + +A + A++ +    GP DP+ AK++ P +LRA+YG + + NA++ +
Sbjct: 61  MVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCT 120

Query: 282 RNEEEAARDIRFFF 295
              E+   +++FFF
Sbjct: 121 DLPEDGPLELKFFF 134

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 134

>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

 Score = 98.7 bits (246), Expect = 4e-25
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           E TLAL+KP A+  +  I Q I++ GFTI K K  K + ++A +F+   E +       L
Sbjct: 1   EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNEL 58

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           V +M SGP+  M L    AI  W  L+GP +   A+   P S+RA +G +   NA +GS 
Sbjct: 59  VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSD 118

Query: 283 NEEEAARDIRFFF 295
           +   AAR++ FFF
Sbjct: 119 SVASAARELEFFF 131

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 131

>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

 Score = 97.5 bits (244), Expect = 1e-24
 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T +++KP A +   + +I    ++KG  IV  K  + + E A   +   +E+ P    
Sbjct: 2   ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEK-PF-FG 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV VMVL  + AI +   LMG  +P +A    P ++R  + ++   N ++G
Sbjct: 60  ELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAA---PGTIRGDFALSIGENVVHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E AAR+I  FF +
Sbjct: 117 SDSPESAAREIALFFSE 133

Length = 134

>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

 Score = 94.9 bits (237), Expect = 9e-24
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL+++KP A +   + +I    ++KG  IV  K  + + E A   +   + + P    
Sbjct: 3   ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGK-PFF-G 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MVL  + AI     LMG  +P  A    P ++R  + ++   N ++G
Sbjct: 61  ELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAA---PGTIRGDFALSVGENVVHG 117

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  FF  
Sbjct: 118 SDSPESAEREIALFFSK 134

Length = 135

>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional

 Score = 77.8 bits (191), Expect = 2e-17
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
             T  ++KP   +  HV +I Q I+++GF I+  K  K + E A +F+     R P    
Sbjct: 2   SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSAR-PF-YN 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  YM SGP+    L +  A+  W  ++G  DP +A      ++RA Y  +   NA++G
Sbjct: 60  DLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAA---AGTIRALYAESKEANAVHG 116

Query: 281 SRNEEEAARDIRFFFK 296
           S ++  AA +I FFFK
Sbjct: 117 SDSDANAALEISFFFK 132

Length = 137

>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 46/178 (25%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREE------- 213
           E TL ++KP A +   V +I    ++ G  IV  K  K TPEQ   F+ + EE       
Sbjct: 4   ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGN 63

Query: 214 -------------------RDPVKVPR-----LVCYMVSGPVRVMVLAKQKAIRRWLHLM 249
                               DPV+V +     LV YM SGP+  MVL   +A+     L+
Sbjct: 64  KLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLV 123

Query: 250 GPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKD 297
           GP  P KA    P ++R  Y ++           + N ++ S + EEA R+I+F+F++
Sbjct: 124 GPTSPHKAP---PGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFRE 178

Length = 183

>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP A     +  I Q  + KGF IV+ K  K T E A E++   E +      
Sbjct: 3   ERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYY--EEHKGKEFYE 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
           RL+ +M SG +  MV+  + AI     ++G  +P +A+   P ++R  +G+    N I+ 
Sbjct: 61  RLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAE---PGTIRGDFGLYTPANIIHA 117

Query: 281 SRNEEEAARDIRFFFKD 297
           S ++E A R+I+ FF +
Sbjct: 118 SDSKESAEREIKLFFGE 134

Length = 134

>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL ++KP   R   +  +   I+  GF +V  K  + T E A EF+    ER P    
Sbjct: 2   ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRER-PF-YG 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGP   M+L K+ A+  +  L+G  DP +A      ++R  Y  +   N ++G
Sbjct: 60  ELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAE---GTVRKLYADSKGENIVHG 116

Query: 281 SRNEEEAARDIRFFF 295
           S + E AA +  FFF
Sbjct: 117 SDSAENAAIEAGFFF 131

Length = 140

>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 165 TLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           T  ++KP A    H+  I   I   GF IV  K  + T   A  F+    ER P     L
Sbjct: 6   TFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAER-PF-YGEL 63

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
           V +M  GP+   +L K+ A+  +  L+G  +P  A      ++R KY  +   NA++GS 
Sbjct: 64  VEFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAE---GTIRKKYAKSIGENAVHGSD 120

Query: 283 NEEEAARDIRFFF 295
           ++E A  +  F F
Sbjct: 121 SDENAQIEGAFHF 133

Length = 139

>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   V +I +  ++KG+ +V  K  + TPE A E +   + + P   P
Sbjct: 3   ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGK-PF-FP 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y+ SGPV  MV   +  +++   L+G  +P ++    P ++R  + V+   N I+G
Sbjct: 61  GLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESA---PGTIRGDFCVDVGRNVIHG 117

Query: 281 SRNEEEAARDIRFFFK 296
           S + E A R+I  +FK
Sbjct: 118 SDSVESAKREIALWFK 133

Length = 149

>gnl|CDD|147395 pfam05186, Dpy-30, Dpy-30 motif

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 323 KIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362
           + YL + V P L +GL EL + +P    E+   +LL+N  
Sbjct: 3   RQYLNDTVAPILLQGLTELAKERPEDPIEFLAEYLLKNRS 42

This motif is found in a wide variety of domain contexts. It is found in the Dpy-30 proteins hence the motifs name. It is about 40 residues long and is probably fomed of two alpha-helices. It may be a dimerisation motif analogous to pfam02197 (Bateman A pers obs). Length = 42

>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP   +   + +I    + KGF +V  K    + E A + +   +ER P    
Sbjct: 89  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKER-PF-FN 146

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  ++ SGPV  MV   +  I+    L+G  DP K++   P ++R    V    N I+G
Sbjct: 147 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE---PGTIRGDLAVVVGRNIIHG 203

Query: 281 SRNEEEAARDIRFFFK 296
           S   E A  +I  +FK
Sbjct: 204 SDGPETAKDEINLWFK 219

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
cd04415	131	NDPk7A Nucleoside diphosphate kinase 7 domain A (N	100.0
cd04418	132	NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP	100.0
PLN02931	177	nucleoside diphosphate kinase family protein	100.0
PRK14542	137	nucleoside diphosphate kinase; Provisional	100.0
PRK14541	140	nucleoside diphosphate kinase; Provisional	100.0
cd04414	135	NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase	100.0
PRK14545	139	nucleoside diphosphate kinase; Provisional	100.0
PTZ00093	149	nucleoside diphosphate kinase, cytosolic; Provisio	100.0
COG0105	135	Ndk Nucleoside diphosphate kinase [Nucleotide tran	100.0
PRK14540	134	nucleoside diphosphate kinase; Provisional	100.0
cd04412	134	NDPk7B Nucleoside diphosphate kinase 7 domain B (N	100.0
cd04416	132	NDPk_TX NDP kinase domain of thioredoxin domain-co	100.0
cd00595	133	NDPk Nucleoside diphosphate kinases (NDP kinases,	100.0
PRK00668	134	ndk mulitfunctional nucleoside diphosphate kinase/	100.0
PRK14543	169	nucleoside diphosphate kinase; Provisional	100.0
cd04413	130	NDPk_I Nucleoside diphosphate kinase Group I (NDPk	100.0
PF00334	135	NDK: Nucleoside diphosphate kinase; InterPro: IPR0	100.0
PLN02619	238	nucleoside-diphosphate kinase	100.0
smart00562	135	NDK These are enzymes that catalyze nonsubstrate s	100.0
PRK14544	183	nucleoside diphosphate kinase; Provisional	100.0
KOG0888|consensus	156		100.0
PF05186	42	Dpy-30: Dpy-30 motif; InterPro: IPR007858 This mot	99.66
KOG4109|consensus	116		99.09
KOG0888|consensus	156		98.5
COG0105	135	Ndk Nucleoside diphosphate kinase [Nucleotide tran	98.03
PRK14542	137	nucleoside diphosphate kinase; Provisional	97.9
PRK14541	140	nucleoside diphosphate kinase; Provisional	97.78
PLN02619	238	nucleoside-diphosphate kinase	97.75
cd04415	131	NDPk7A Nucleoside diphosphate kinase 7 domain A (N	97.66
PRK14540	134	nucleoside diphosphate kinase; Provisional	97.65
PRK14545	139	nucleoside diphosphate kinase; Provisional	97.61
PTZ00093	149	nucleoside diphosphate kinase, cytosolic; Provisio	97.53
PRK00668	134	ndk mulitfunctional nucleoside diphosphate kinase/	97.38
cd04418	132	NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP	97.34
cd04413	130	NDPk_I Nucleoside diphosphate kinase Group I (NDPk	97.28
PRK14543	169	nucleoside diphosphate kinase; Provisional	97.14
cd04414	135	NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase	97.02
PLN02931	177	nucleoside diphosphate kinase family protein	96.96
cd00595	133	NDPk Nucleoside diphosphate kinases (NDP kinases,	96.92
cd04412	134	NDPk7B Nucleoside diphosphate kinase 7 domain B (N	96.88
PRK14544	183	nucleoside diphosphate kinase; Provisional	96.79
cd04416	132	NDPk_TX NDP kinase domain of thioredoxin domain-co	96.75
smart00562	135	NDK These are enzymes that catalyze nonsubstrate s	96.28
PF02197	38	RIIa: Regulatory subunit of type II PKA R-subunit;	95.93
PF00334	135	NDK: Nucleoside diphosphate kinase; InterPro: IPR0	95.44
smart00394	38	RIIa RIIalpha, Regulatory subunit portion of type	94.74
PTZ00378	518	hypothetical protein; Provisional	87.49
KOG4109|consensus	116		84.17

>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=100.00  E-value=5.7e-44  Score=311.22  Aligned_cols=131  Identities=39%  Similarity=0.638  Sum_probs=129.6

Q ss_pred             ceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccHH
Q psy4316         163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI  242 (377)
Q Consensus       163 ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV  242 (377)
                      |+||+|||||+++++|+||++|+++||.|+++||++||+++|++||.  +|+|++||++|+++|+|||++||+|.|+|||
T Consensus         1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav   78 (131)
T cd04415           1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNELVQFMTSGPIVAMELVGDDAI   78 (131)
T ss_pred             CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence            68999999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316         243 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF  295 (377)
Q Consensus       243 ~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF  295 (377)
                      ++||++|||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.|||
T Consensus        79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF  131 (131)
T cd04415          79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF  131 (131)
T ss_pred             HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999998

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species

Probab=100.00  E-value=1.7e-43  Score=308.27  Aligned_cols=132  Identities=47%  Similarity=0.782  Sum_probs=130.4

Q ss_pred             ceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccHH
Q psy4316         163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI  242 (377)
Q Consensus       163 ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV  242 (377)
                      |+||+||||||++++|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|+++|+|||++||+|.|+|||
T Consensus         1 e~Tl~iIKPda~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV   78 (132)
T cd04418           1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHLVAYMSSGPIVAMVLARHNAI   78 (132)
T ss_pred             CeEEEEECcHHHhhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence            68999999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC
Q psy4316         243 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK  296 (377)
Q Consensus       243 ~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp  296 (377)
                      ++||++|||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.||||
T Consensus        79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~  132 (132)
T cd04418          79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP  132 (132)
T ss_pred             HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999997

It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).

>PLN02931 nucleoside diphosphate kinase family protein

Probab=100.00  E-value=2.3e-43  Score=321.86  Aligned_cols=144  Identities=40%  Similarity=0.616  Sum_probs=140.0

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ...|+||||||||++.+  +|+||++|+++||.|+++||++||+++|++||.  +|.|++||++|++||+||||+||+|.
T Consensus        27 ~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~--~h~gk~ff~~Lv~~mtSGP~vam~L~  104 (177)
T PLN02931         27 SEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYA--EHSSRSFFPSLVKYMTSGPVLVMVLE  104 (177)
T ss_pred             CcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHHhCCeEEEEEe
Confidence            44799999999999954  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |+|||++||++|||+||..|+..+|+|||++||.+.++|+|||||++++|++|++|||+....+||.+
T Consensus       105 g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~~~~~~  172 (177)
T PLN02931        105 KENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSGDVAS  172 (177)
T ss_pred             cCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999986

>PRK14542 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=3.1e-43  Score=309.10  Aligned_cols=133  Identities=32%  Similarity=0.539  Sum_probs=128.2

Q ss_pred             cceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+.  ++|+||++|+++||.|+++||++||+++|++||.  +|++++||++|++||+|||++||+|.|+
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~Lv~~m~sGp~va~~l~g~   78 (137)
T PRK14542          1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYK--VHSARPFYNDLCNYMSSGPIVAAALERD   78 (137)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCC
Confidence            48999999999995  4899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      |||+.||++|||+||..|   .|+|||++||.+.++|+|||||++++|.+|+.|||++..
T Consensus        79 nav~~~R~l~Gpt~p~~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~  135 (137)
T PRK14542         79 NAVLHWREVIGATDPKEA---AAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNE  135 (137)
T ss_pred             CHHHHHHHHhCCCCchhC---CCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhh
Confidence            999999999999999999   599999999999999999999999999999999998643

>PRK14541 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=7.6e-43  Score=307.48  Aligned_cols=134  Identities=32%  Similarity=0.498  Sum_probs=129.0

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+.+  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++|++||+||||++|+|.|+
T Consensus         1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~ff~~Lv~~m~sgp~va~~l~g~   78 (140)
T PRK14541          1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYA--VHRERPFYGELVEFMSSGPCVPMILEKE   78 (140)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEecC
Confidence            489999999999954  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |||++||++|||+||..|   .|+|||++||++.++|+|||||++++|.+|+.|||++..+
T Consensus        79 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~  136 (140)
T PRK14541         79 NAVADFRTLIGATDPAEA---AEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEV  136 (140)
T ss_pred             cHHHHHHHHhCCCCchhC---CCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhh
Confidence            999999999999999999   5999999999999999999999999999999999987543

>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues

Probab=100.00  E-value=9.5e-43  Score=304.61  Aligned_cols=132  Identities=42%  Similarity=0.697  Sum_probs=128.9

Q ss_pred             ceEEEEEcCccccc---hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         163 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       163 ErTLaLIKPDAv~~---~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      |+||+||||||+++   .|.|++.|+++||.|+++||++||+++|++||.  +|.+++||+.|++||+||||+||+|.|+
T Consensus         1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~f~~~Lv~~m~sgp~val~l~~~   78 (135)
T cd04414           1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYA--EHKGKFFYDRLVSFMTSGPSWALILAHE   78 (135)
T ss_pred             CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEEcC
Confidence            68999999999988   588888899999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK  296 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp  296 (377)
                      |||++||++|||+||..|+...|+|||++||++.++|+|||||++++|.+||.||||
T Consensus        79 naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~  135 (135)
T cd04414          79 NAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP  135 (135)
T ss_pred             CHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999997

NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.

>PRK14545 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=2.6e-42  Score=303.62  Aligned_cols=133  Identities=28%  Similarity=0.409  Sum_probs=128.6

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|.+++||++|+++|+||||+||+|.|+
T Consensus         3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~ff~~Lv~~m~sGp~va~~l~g~   80 (139)
T PRK14545          3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYA--VHAERPFYGELVEFMSRGPIVAAILEKE   80 (139)
T ss_pred             cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCEEEEEEecC
Confidence            589999999999964  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      |||++||++|||+||..|   .|+|||++||.+.++|+|||||++++|.+|+.|||+...
T Consensus        81 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~  137 (139)
T PRK14545         81 NAVEDFRTLIGATNPADA---AEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGRE  137 (139)
T ss_pred             CHHHHHHHHhCCCCcccC---CCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCccc
Confidence            999999999999999999   599999999999999999999999999999999998743

>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional

Probab=100.00  E-value=2.6e-42  Score=306.90  Aligned_cols=134  Identities=32%  Similarity=0.502  Sum_probs=129.2

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+||||||+.+  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~gk~ff~~Lv~~m~sGp~val~l~g~   79 (149)
T PTZ00093          2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYK--EHKGKPFFPGLVKYISSGPVVCMVWEGK   79 (149)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCEEEEEEeCC
Confidence            589999999999964  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |||++||++|||+||..|   .|+|||++||++.++|+|||||++++|.+|+.|||+...+
T Consensus        80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~  137 (149)
T PTZ00093         80 NVVKQGRKLLGATNPLES---APGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEEL  137 (149)
T ss_pred             CHHHHHHHHhCCCCcccc---CCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhc
Confidence            999999999999999987   7999999999999999999999999999999999987544

>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=4.3e-42  Score=298.68  Aligned_cols=131  Identities=32%  Similarity=0.519  Sum_probs=128.8

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +||||+|||||++++  +|+||++++++||+|+++||+++++++|++||.  +|+++|||..||+||||||+++|+|+|+
T Consensus         2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~--~h~~kpFf~~Lv~fitSgPvv~~VleGe   79 (135)
T COG0105           2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYA--EHKGKPFFGELVEFITSGPVVAMVLEGE   79 (135)
T ss_pred             cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHH--HHcCCCccHHHHhheecCcEEEEEEecH
Confidence            689999999999998  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD  297 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~  297 (377)
                      |||+.+|+++|+|||..|   .|+|||++||.+..+|+||||||+++|+|||.|||++
T Consensus        80 ~ai~~~R~l~GaTnp~~A---~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~  134 (135)
T COG0105          80 NAISVVRKLMGATNPANA---APGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK  134 (135)
T ss_pred             hHHHHHHHHHCCCCcccC---CCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence            999999999999999999   8999999999999999999999999999999999985

>PRK14540 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=5.7e-42  Score=299.56  Aligned_cols=131  Identities=33%  Similarity=0.544  Sum_probs=127.4

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|.+++||+.|++||+|||++||+|.|+
T Consensus         2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~L~~~m~sgp~val~l~g~   79 (134)
T PRK14540          2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYE--EHKGKEFYERLINFMTSGRIVAMVIEGE   79 (134)
T ss_pred             ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHccCCeEEEEEeCC
Confidence            589999999999954  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD  297 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~  297 (377)
                      |||++||++|||+||..|   +|+|||++||.+.++|+|||||++++|.+|+.|||++
T Consensus        80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~  134 (134)
T PRK14540         80 NAISTVRKMIGKTNPAEA---EPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE  134 (134)
T ss_pred             ChHHHHHHHhCCCCcccC---CCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence            999999999999999988   6999999999999999999999999999999999984

>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=100.00  E-value=7e-42  Score=298.43  Aligned_cols=131  Identities=32%  Similarity=0.612  Sum_probs=129.1

Q ss_pred             ceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCC-CCcccccceeecCcEEEEEEeec
Q psy4316         163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDP-VKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       163 ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk-~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      ++||+|||||++.+  +|+||++|+++||.|+++||++||+++|++||.  +|.++ +||+.|+++|+|||+++|+|.|+
T Consensus         1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~~l~~~m~sGp~val~l~g~   78 (134)
T cd04412           1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLE--VYKGVVPELPAMVDELTSGPCIALEIAGE   78 (134)
T ss_pred             CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HHcCccchHHHHHHHHhcCCeEEEEEECC
Confidence            58999999999998  999999999999999999999999999999999  99999 99999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF  295 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF  295 (377)
                      |||++||+++||+||..|+...|+|||++||++.++|+|||||++++|.+|+.|||
T Consensus        79 nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF  134 (134)
T cd04412          79 NAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF  134 (134)
T ss_pred             cHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999998

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively

Probab=100.00  E-value=5.9e-42  Score=297.78  Aligned_cols=131  Identities=44%  Similarity=0.749  Sum_probs=128.6

Q ss_pred             ceEEEEEcCccccc-hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccH
Q psy4316         163 EYTLALVKPHAFRH-VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKA  241 (377)
Q Consensus       163 ErTLaLIKPDAv~~-~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NA  241 (377)
                      |+||+|||||++.+ +|+|+++|+++||.|+++||++||+++|++||.  +|.+++||++|+++|+|||+++|+|.|+||
T Consensus         1 e~Tl~iIKPdav~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~~~~~~~~lv~~m~sgp~v~l~l~~~~a   78 (132)
T cd04416           1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYK--EHEEEDYFEDLVEFMTSGPSLILVLSKENA   78 (132)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence            68999999999965 899999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316         242 IRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF  295 (377)
Q Consensus       242 V~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF  295 (377)
                      |++||+++||+||..|+...|+|||++||.+.++|+|||||++++|.+||.|||
T Consensus        79 v~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF  132 (132)
T cd04416          79 VEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF  132 (132)
T ss_pred             HHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999998

Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.

>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

Probab=100.00  E-value=9.5e-42  Score=296.32  Aligned_cols=131  Identities=44%  Similarity=0.740  Sum_probs=128.7

Q ss_pred             ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316         163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK  240 (377)
Q Consensus       163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N  240 (377)
                      |+||+|||||+++  ++|+||++|+++||.|+++||++||+++|++||.  +|.+++||++|+++|+|||+++|+|.|+|
T Consensus         1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~~~~~lv~~m~sGp~v~l~l~g~~   78 (133)
T cd00595           1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYV--EHKGRPFFPDLVQFMSSGPVVAMILEKDN   78 (133)
T ss_pred             CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEecCC
Confidence            6899999999998  5899999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316         241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF  295 (377)
Q Consensus       241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF  295 (377)
                      ||++||+++||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.|||
T Consensus        79 av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F  133 (133)
T cd00595          79 AVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF  133 (133)
T ss_pred             hHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999998

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a

>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

Probab=100.00  E-value=1.2e-41  Score=296.75  Aligned_cols=131  Identities=34%  Similarity=0.550  Sum_probs=127.0

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++.+  +|+||++|+++||.|+++||++||+++|++||.  +|.+++||+.|+++|+|||++||+|.|+
T Consensus         1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~--~~~~k~f~~~Lv~~m~sgp~~al~l~g~   78 (134)
T PRK00668          1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYA--EHKEKPFFGELVEFMTSGPVVVMVLEGE   78 (134)
T ss_pred             CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHhccCCeEEEEEeCc
Confidence            479999999999954  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD  297 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~  297 (377)
                      |||++||++|||+||..|   .|+|||++||.+.++|+|||||++++|.+|+.||||+
T Consensus        79 nav~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~  133 (134)
T PRK00668         79 NAIAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE  133 (134)
T ss_pred             hHHHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence            999999999999999876   7999999999999999999999999999999999986

>PRK14543 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=4.6e-41  Score=304.81  Aligned_cols=139  Identities=24%  Similarity=0.409  Sum_probs=129.7

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhccc---ccccCCCCcccccceeecCcEEEEE
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT---REERDPVKVPRLVCYMVSGPVRVMV  235 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~---~e~~gk~ff~~LV~~MtSGPvVaL~  235 (377)
                      ..|+||+||||||+++  +|+||++|+++||+|+++||++||+++|++||.+   .+|++++||++|++||+|||++||+
T Consensus         4 ~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valv   83 (169)
T PRK14543          4 LIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFV   83 (169)
T ss_pred             ccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEE
Confidence            4799999999999964  8999999999999999999999999999999942   2689999999999999999999999


Q ss_pred             EeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCC----------CccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316         236 LAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN----------DIMNAIYGSRNEEEAARDIRFFFKDIIIEP  302 (377)
Q Consensus       236 L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d----------~~rNaVHgSDs~esA~rEi~fFFp~~~~ep  302 (377)
                      |.|+|||+.||++||||||..|   .|+|||++||.+          .++|+||||||+++|.|||+||||+..+-+
T Consensus        84 l~g~naI~~~R~l~Gpt~p~~a---~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~  157 (169)
T PRK14543         84 VEGVESVEVVRKFCGSTEPKLA---IPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILT  157 (169)
T ss_pred             EECCCHHHHHHHHhCCCCcccc---CCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccccc
Confidence            9999999999999999999877   799999999987          789999999999999999999999866543

>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

Probab=100.00  E-value=6.3e-41  Score=290.85  Aligned_cols=128  Identities=34%  Similarity=0.547  Sum_probs=124.7

Q ss_pred             ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316         163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK  240 (377)
Q Consensus       163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N  240 (377)
                      |+||+|||||++.  ++|+||++|.++||.|+++||++|++++|++||.  +|.+++||+.|+++|+||||+||+|.|+|
T Consensus         1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~--~~~~k~~~~~l~~~m~sgp~~al~l~~~n   78 (130)
T cd04413           1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYA--EHKGKPFFPELVEFMTSGPVVAMVLEGEN   78 (130)
T ss_pred             CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhh--hhcCCchHHHHHHHHhcCCEEEEEEeCCc
Confidence            6899999999995  4899999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316         241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF  295 (377)
Q Consensus       241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF  295 (377)
                      ||++||++|||+||+.|   .|+|||++||++.++|+|||||++++|.+|+.|||
T Consensus        79 av~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF  130 (130)
T cd04413          79 AVKTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSVESAEREIALWF  130 (130)
T ss_pred             HHHHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence            99999999999999977   79999999999999999999999999999999998

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that

>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2

Probab=100.00  E-value=1.6e-40  Score=288.15  Aligned_cols=132  Identities=43%  Similarity=0.707  Sum_probs=121.0

Q ss_pred             ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316         163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK  240 (377)
Q Consensus       163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N  240 (377)
                      |+||+||||||+.  ++|+||++|+++||.|+++||++|++++|++||.  ++.++++|+.|+++|+||||+||+|.|+|
T Consensus         1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~--~~~~~~~~~~lv~~m~sgp~v~l~l~g~~   78 (135)
T PF00334_consen    1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYE--EHKGKPFFDALVDFMSSGPSVALVLEGEN   78 (135)
T ss_dssp             EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTG--GGTTSTTHHHHHHHHTSSEEEEEEEESTT
T ss_pred             CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEE--eecCCcceecccceeecCCcEEEEeecch
Confidence            6999999999997  4899999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      ||++||+++||+||+.|   .|+|||++||.+.++|+|||||++++|.||+.||||+..
T Consensus        79 av~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~  134 (135)
T PF00334_consen   79 AVEKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFE  134 (135)
T ss_dssp             HHHHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGG
T ss_pred             hhHHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCccc
Confidence            99999999999999999   899999999999999999999999999999999999754

7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....

>PLN02619 nucleoside-diphosphate kinase

Probab=100.00  E-value=2.1e-40  Score=313.37  Aligned_cols=136  Identities=27%  Similarity=0.381  Sum_probs=130.9

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ...|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+|||+++|+|.
T Consensus        86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~--ehkgKpFf~~Lv~fMtSGPvvamvL~  163 (238)
T PLN02619         86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYH--DLKERPFFNGLCDFLSSGPVVAMVWE  163 (238)
T ss_pred             chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHH--HhcCCCcHHHHHHHHhcCCeEEEEEE
Confidence            35799999999999998  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |+|||+.||++||||||..|   .|+|||++||++.++|+|||||++++|.+||.|||++..+
T Consensus       164 GenaV~~~R~LiGpTdP~~A---~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei  223 (238)
T PLN02619        164 GEGVIKYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEEL  223 (238)
T ss_pred             CCcHHHHHHHHhCCCCcccc---CCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhc
Confidence            99999999999999999977   7999999999999999999999999999999999987544

>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

Probab=100.00  E-value=1.9e-39  Score=281.70  Aligned_cols=131  Identities=40%  Similarity=0.661  Sum_probs=125.9

Q ss_pred             ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316         163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK  240 (377)
Q Consensus       163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N  240 (377)
                      |+||+|||||++.  ++|+||++|+++||.|+++||++|++++|++||.  +|.+++||+.|+++|+|||+++|+|.|+|
T Consensus         1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~lv~~m~sgp~~~l~l~g~n   78 (135)
T smart00562        1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYA--EHKGKPFFNDLVEFMTSGPVVAMVLEGED   78 (135)
T ss_pred             CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HhcCCchHHHHHHHhhcCCeEEEEEecCC
Confidence            6899999999995  4899999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCC
Q psy4316         241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDI  298 (377)
Q Consensus       241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~  298 (377)
                      ||++||++|||+||..+   .|+|||++||.+.++|+|||||++++|.+|+.||||..
T Consensus        79 av~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~  133 (135)
T smart00562       79 AVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPES  133 (135)
T ss_pred             HHHHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCcc
Confidence            99999999999998555   79999999999999999999999999999999999874

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.

>PRK14544 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=4.2e-38  Score=288.58  Aligned_cols=133  Identities=35%  Similarity=0.579  Sum_probs=125.5

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccc--------------------------
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREE--------------------------  213 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~--------------------------  213 (377)
                      .|+||+|||||++.+  +|+||++|.++||.|+++||++||+++|++||.  +|                          
T Consensus         3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~   80 (183)
T PRK14544          3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYP--SSEEWYRSVGNKLLKAYQELGIDPRARL   80 (183)
T ss_pred             cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHH--Hhhhhhhhhhhhhhhhhhhccccccccc
Confidence            689999999999964  899999999999999999999999999999997  43                          


Q ss_pred             -------cCCCCcccccceeecCcEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCC----------ccc
Q psy4316         214 -------RDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMN  276 (377)
Q Consensus       214 -------~gk~ff~~LV~~MtSGPvVaL~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~----------~rN  276 (377)
                             .+++||+.|++||+||||+||+|.|+|||++||++|||++|..|   .|+|||++||.+.          ++|
T Consensus        81 ~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~N  157 (183)
T PRK14544         81 GTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYN  157 (183)
T ss_pred             ccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceee
Confidence                   67899999999999999999999999999999999999999888   7999999999874          799


Q ss_pred             eEEcCCCHHHHHHHHHhccCCCc
Q psy4316         277 AIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       277 aVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      +|||||++++|.+|+.|||++..
T Consensus       158 avH~Sds~e~A~rEi~~fF~~~~  180 (183)
T PRK14544        158 LVHASDSPEEAEREIKFWFREEE  180 (183)
T ss_pred             EEECCCCHHHHHHHHHHhCChhh
Confidence            99999999999999999998743

>KOG0888|consensus

Probab=100.00  E-value=8.8e-39  Score=286.15  Aligned_cols=139  Identities=34%  Similarity=0.593  Sum_probs=134.1

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||++||||++++  +++||.+++++||.|++.++++++++++++||.  +|++++||+.||.||+|||++||+|.|.
T Consensus         5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~--~~~~~~Ff~~Lv~~m~SGPvvamv~~g~   82 (156)
T KOG0888|consen    5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYS--DLKSKPFFPGLVEYMSSGPVVAMVLEGD   82 (156)
T ss_pred             hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCcceehhhcCC
Confidence            689999999999977  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP  302 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep  302 (377)
                      |||+.||+++|||+|..|+..+|+|||++||++.++|++|||||.++|+|||.+||+...+..
T Consensus        83 ~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~  145 (156)
T KOG0888|consen   83 NVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVV  145 (156)
T ss_pred             CHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhhee
Confidence            999999999999999999999999999999999999999999999999999999999854433

>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices

Probab=99.66  E-value=6.7e-17  Score=116.21  Aligned_cols=42  Identities=38%  Similarity=0.752  Sum_probs=37.6

Q ss_pred             hHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316         321 AHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP  362 (377)
Q Consensus       321 ~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP  362 (377)
                      |+|+||+++|+|+|++||++|||+||+||++|||+||++|||
T Consensus         1 p~r~YL~~~v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~~~p   42 (42)
T PF05186_consen    1 PARQYLKETVGPVLTEGLAELAKERPEDPIEFLAEYLLKHNP   42 (42)
T ss_dssp             -HHHHHHHHTHHHHHHHHHHHHHH--SSHHHHHHHHHHHHG-
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCc
Confidence            579999999999999999999999999999999999999998

It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.

>KOG4109|consensus

Probab=99.09  E-value=6.6e-11  Score=101.42  Aligned_cols=45  Identities=27%  Similarity=0.569  Sum_probs=42.7

Q ss_pred             chhhHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316         318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP  362 (377)
Q Consensus       318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP  362 (377)
                      ++.++|+||+++|.|.|++||.+|+|+||.||++|||.||++|.-
T Consensus        62 ~~~ptRqYLdqtVaPiLL~Gm~~lA~~rP~nPi~~LatyLlk~sn  106 (116)
T KOG4109|consen   62 NSMPTRQYLDQTVAPILLQGMAALAKERPSNPISFLATYLLKNSN  106 (116)
T ss_pred             cCCchhhhcccchhHHHHHHHHHHHhhCCCCHHHHHHHHHhcccc
Confidence            588999999999999999999999999999999999999999753

>KOG0888|consensus

Probab=98.50  E-value=1.3e-08  Score=92.13  Aligned_cols=55  Identities=24%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL  112 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  112 (377)
                      |-=.+|...+.+||.|++++||   |-++|.||.||  ++|||+|.|+|+++|-++|+++
T Consensus        40 k~~~~s~~~~e~~Y~~~~~~~F---f~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~   96 (156)
T KOG0888|consen   40 KLVQLSKELLEEHYSDLKSKPF---FPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTN   96 (156)
T ss_pred             eeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCC
Confidence            5557899999999999999999   99999999999  9999999999999999999988

>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

Probab=98.03  E-value=5.4e-07  Score=79.56  Aligned_cols=56  Identities=20%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             CCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCccc
Q psy4316          58 AWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWS  116 (377)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (377)
                      -.|.++..+||+..|++||   |..++-||.||  +.|||||.|.|++.|.|+|.|+|.=+
T Consensus        40 ~~~~e~Ae~~Y~~h~~kpF---f~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~~A   97 (135)
T COG0105          40 QLSRELAENHYAEHKGKPF---FGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANA   97 (135)
T ss_pred             ccCHHHHHHHHHHHcCCCc---cHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcccC
Confidence            4577888999999999999   99999999999  99999999999999999999994433

>PRK14542 nucleoside diphosphate kinase; Provisional

Probab=97.90  E-value=1.4e-06  Score=77.18  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...+||.+.++.||   |..++.+|.+|  |+|+++|.|+|++.|-++|++.|
T Consensus        35 ~k~~~lt~~~a~~~Y~~~~~k~f---~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p   93 (137)
T PRK14542         35 LKYLKLSLEDAKQFYKVHSARPF---YNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDP   93 (137)
T ss_pred             eeeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCc
Confidence            46667889999999999999999   99999999999  99999999999999999999983

>PRK14541 nucleoside diphosphate kinase; Provisional

Probab=97.78  E-value=3e-06  Score=75.28  Aligned_cols=57  Identities=14%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..+.+...+||.+.++.||   |..++.+|.+|  |+||+.|.|+|++-|-++|++.+
T Consensus        35 ~k~~~lt~e~a~~~Y~~~~~k~f---f~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p   93 (140)
T PRK14541         35 MKKTRLTKETAGEFYAVHRERPF---YGELVEFMSSGPCVPMILEKENAVADFRTLIGATDP   93 (140)
T ss_pred             eeeecCCHHHHHHHHHHHcCCcc---HHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCc
Confidence            46667888899999999999999   99999999999  99999999999999999998883

>PLN02619 nucleoside-diphosphate kinase

Probab=97.75  E-value=3.9e-06  Score=80.62  Aligned_cols=85  Identities=22%  Similarity=0.246  Sum_probs=64.4

Q ss_pred             ccccccCCCCChh---HHHHhhhhhhCCC-ccccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCC
Q psy4316          26 KTENRIKDDDNED---EEEKQNYMERGPH-SFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLN   99 (377)
Q Consensus        26 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   99 (377)
                      +|---||-|--..   .+-.+...+.|=+ .-.|.-..+.+..++||.+.++.||   |..+|.||.+|  |+||++|.|
T Consensus        90 rTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpF---f~~Lv~fMtSGPvvamvL~Gen  166 (238)
T PLN02619         90 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPF---FNGLCDFLSSGPVVAMVWEGEG  166 (238)
T ss_pred             eEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCc---HHHHHHHHhcCCeEEEEEECCc
Confidence            3444466554222   2333333344432 2256777899999999999999999   99999999999  999999999


Q ss_pred             ceeeecccCCCCCC
Q psy4316         100 PIKVSKWPLPPPLP  113 (377)
Q Consensus       100 ~~~~~~~~~~~~~~  113 (377)
                      +|+..|-++|+++|
T Consensus       167 aV~~~R~LiGpTdP  180 (238)
T PLN02619        167 VIKYGRKLIGATDP  180 (238)
T ss_pred             HHHHHHHHhCCCCc
Confidence            99999999999984

>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=97.66  E-value=4.7e-06  Score=73.16  Aligned_cols=57  Identities=18%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...+||.+.++.||   |.+++.+|.+|  ++|++.|.|+|++.|-++|+++|
T Consensus        32 ~k~~~lt~~~a~~~y~~~~gk~f---~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p   90 (131)
T cd04415          32 AKMTKLSRKEAQDFYAEHQSKPF---YNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNS   90 (131)
T ss_pred             eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCh
Confidence            46667899999999999999999   99999999999  99999999999999999999883

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>PRK14540 nucleoside diphosphate kinase; Provisional

Probab=97.65  E-value=7.2e-06  Score=72.16  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...+||.+.++.||   |..++.+|.+|  |+|++.|.|+|+..|.++|++.+
T Consensus        36 ~k~~~lt~~~a~~~Y~~~~~k~f---~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p   94 (134)
T PRK14540         36 MKMLKLTREMAEEYYEEHKGKEF---YERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNP   94 (134)
T ss_pred             eeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCc
Confidence            45667899999999999999999   99999999999  99999999999999999999884

>PRK14545 nucleoside diphosphate kinase; Provisional

Probab=97.61  E-value=7.8e-06  Score=72.47  Aligned_cols=57  Identities=12%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...+||.+.++.||   |..++.+|.+|  |+|++.|.|+|+..|-++|++.+
T Consensus        37 ~k~~~lt~~~a~~~Y~~~~~k~f---f~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p   95 (139)
T PRK14545         37 MKLTQLTVADAETFYAVHAERPF---YGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNP   95 (139)
T ss_pred             eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence            36677899999999999999999   99999999999  99999999999999999999883

>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional

Probab=97.53  E-value=1.2e-05  Score=72.08  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...++|.+.+..||   |..++.+|.+|  |+|+++|.|+|++-|.++|++.+
T Consensus        36 ~k~~~lt~~~a~~fY~~~~gk~f---f~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p   94 (149)
T PTZ00093         36 LKMLQPTPEIAEEHYKEHKGKPF---FPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNP   94 (149)
T ss_pred             eEeecCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCc
Confidence            46677899999999999999999   99999999999  99999999999999999998884

>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

Probab=97.38  E-value=2.6e-05  Score=68.38  Aligned_cols=57  Identities=23%  Similarity=0.236  Sum_probs=53.2

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.+|.+...++|.+.++.||   |..++.+|.+|  ++|++.|.|.|+..|.++|++.+
T Consensus        35 ~k~~~ls~~~a~~fy~~~~~k~f---~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p   93 (134)
T PRK00668         35 LKMMQLSRELAEGHYAEHKEKPF---FGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNP   93 (134)
T ss_pred             eeeecCCHHHHHHHHHHhcCCch---HHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCc
Confidence            46667999999999999999999   99999999999  99999999999999999999885

>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species

Probab=97.34  E-value=2.3e-05  Score=68.76  Aligned_cols=56  Identities=21%  Similarity=0.141  Sum_probs=52.4

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL  112 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  112 (377)
                      .|.-.+|.....+||.+.++.+|   |..+|.+|.+|  |+|++.|.|+|++-|-++|+++
T Consensus        32 ~k~~~lt~~~a~~~y~~~~~~~~---~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~   89 (132)
T cd04418          32 KRKLQLSPEQCSDFYAEHYGKMF---FPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTN   89 (132)
T ss_pred             eeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCC
Confidence            46677899999999999999999   99999999999  9999999999999999999888

It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).

>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

Probab=97.28  E-value=4.6e-05  Score=66.53  Aligned_cols=57  Identities=19%  Similarity=0.223  Sum_probs=52.9

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.+|.+..+++|.+.++.||   |..++.+|.+|  ++|++.|.|+|++-|-++|++.+
T Consensus        34 ~k~~~ls~~~a~~~y~~~~~k~~---~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~   92 (130)
T cd04413          34 LKMLQLTEELAEEHYAEHKGKPF---FPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNP   92 (130)
T ss_pred             eeeccCCHHHHHHHhhhhcCCch---HHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCc
Confidence            46678999999999999999999   99999999999  99999999999999999998884

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that

>PRK14543 nucleoside diphosphate kinase; Provisional

Probab=97.14  E-value=8.7e-05  Score=68.16  Aligned_cols=57  Identities=9%  Similarity=0.022  Sum_probs=51.0

Q ss_pred             ccCCCCccccCCcccc-----ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVA-----DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..+.....+||+     +.+..||   |..++.+|.+|  |+||+.|.|+|+.-|-++|++.+
T Consensus        39 ~k~~~lt~e~a~~fY~~~~~~~h~gk~f---f~~Lv~~mtsGP~valvl~g~naI~~~R~l~Gpt~p  102 (169)
T PRK14543         39 AKMLLVDRSMAEKHYLYDDIAVRHGEAV---WKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEP  102 (169)
T ss_pred             eeeccCCHHHHHHHhccCccccccCCch---HHHHHHHHccCCeEEEEEECCCHHHHHHHHhCCCCc
Confidence            4556677788888885     8899999   99999999999  99999999999999999999985

>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues

Probab=97.02  E-value=6.6e-05  Score=66.13  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=52.7

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...++|.+.+..+|   |..++.+|.+|  |+|+..|.|+|++.|-++|++.+
T Consensus        35 ~k~~~lt~~~a~~~Y~~~~~~~f---~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p   93 (135)
T cd04414          35 KKELRWTTEDAERFYAEHKGKFF---YDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKV   93 (135)
T ss_pred             eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCCh
Confidence            46667888999999999999999   99999999999  99999999999999999998884

NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.

>PLN02931 nucleoside diphosphate kinase family protein

Probab=96.96  E-value=8.8e-05  Score=68.62  Aligned_cols=94  Identities=20%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CCccccccCccccccCCCCCh---hHHHHhhhhhhCCCc-cccCCCCccccCCccccccCCchhhhhhhhhhhheeec--
Q psy4316          17 GVGTESVNGKTENRIKDDDNE---DEEEKQNYMERGPHS-FSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--   90 (377)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   90 (377)
                      |.|..+--.+|---||-|--+   -.+--+...+.|=+- -.|.-.++.+...++|.+.+..||   |.+++.+|.+|  
T Consensus        22 ~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~f---f~~Lv~~mtSGP~   98 (177)
T PLN02931         22 SSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSF---FPSLVKYMTSGPV   98 (177)
T ss_pred             CCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHHhCCe
Confidence            445556666777778876532   223333344444332 257778899999999999999999   99999999999  


Q ss_pred             hheeecCCCceeeecccCCCCCC
Q psy4316          91 IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |+|++.|.|+|++.|-++|++.+
T Consensus        99 vam~L~g~naV~~~R~liGptdp  121 (177)
T PLN02931         99 LVMVLEKENAVSDWRTLIGPTDA  121 (177)
T ss_pred             EEEEEecCCHHHHHHHHhCCCCh
Confidence            99999999999999999998883

>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

Probab=96.92  E-value=9.9e-05  Score=64.44  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=52.5

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+..+++|.+.++.||   |..++.+|.+|  ++|++.|.|+|++.|-++|++.+
T Consensus        34 ~k~~~lt~~~a~~~Y~~~~~~~~---~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p   92 (133)
T cd00595          34 MKELHLTEEQAEEFYVEHKGRPF---FPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNP   92 (133)
T ss_pred             eeeecCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCCh
Confidence            46667888899999999999999   99999999999  99999999999999999998883

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a

>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=96.88  E-value=9.8e-05  Score=64.83  Aligned_cols=57  Identities=14%  Similarity=-0.021  Sum_probs=52.4

Q ss_pred             ccCCCCccccCCccccccCCc-hhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHS-EFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...++|.+.++. ||   |..++.+|.+|  |+|++.|.|+|++.|-++|++.|
T Consensus        34 ~k~~~lt~~~a~~~y~~~~~~~~~---~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p   93 (134)
T cd04412          34 LQMFNLTRANAEEFLEVYKGVVPE---LPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDP   93 (134)
T ss_pred             eEeecCCHHHHHHHHHHHcCccch---HHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCh
Confidence            466678889999999999999 99   99999999999  99999999999999999998883

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>PRK14544 nucleoside diphosphate kinase; Provisional

Probab=96.79  E-value=0.00021  Score=66.53  Aligned_cols=45  Identities=18%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             ccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          66 GDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|+-+.++.+|   |..++.||.+|  ++||+.|.|+|+.-|.++|++.+
T Consensus        82 ~~~~~~~gk~~---~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p  128 (183)
T PRK14544         82 TDDPVEVGKKV---KESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSP  128 (183)
T ss_pred             cccccccCCch---hHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCc
Confidence            44445577888   99999999999  99999999999999999999884

>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively

Probab=96.75  E-value=0.00017  Score=63.09  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++....+++|.+.++.||   |..++.+|.+|  |+|++.|.|+|+.-|-++|++.+
T Consensus        33 ~k~~~lt~~~a~~fY~~~~~~~~---~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p   91 (132)
T cd04416          33 QKEMVLTEEQAREFYKEHEEEDY---FEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDP   91 (132)
T ss_pred             eeeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCh
Confidence            46678899999999999999999   99999999999  99999999999999999998873

Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.

>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

Probab=96.28  E-value=0.00049  Score=60.00  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.=.++.+..+++|.+.++.||   |..++.+|.+|  ++|+.+|.|+|++.|-++|++.+
T Consensus        35 k~~~lt~~~a~~~y~~~~~~~~---~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~   92 (135)
T smart00562       35 KMLQLTEELAEEFYAEHKGKPF---FNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDP   92 (135)
T ss_pred             eeecCCHHHHHHHHHHhcCCch---HHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCCh
Confidence            4456788888899999999999   99999999999  99999999999999999999873

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.

>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.93  E-value=0.011  Score=41.70  Aligned_cols=27  Identities=19%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             hHHHHHH-HHHHHhCCCChHHHHHHHHH
Q psy4316         332 PTLQKGL-AELVRMKPAHSYEWFVNWLL  358 (377)
Q Consensus       332 P~L~~gL-~el~k~rP~dPv~~La~~Ll  358 (377)
                      +.|++++ .++++++|.|++.|.|+|.-
T Consensus         4 ~~lL~~~~~~vl~~qP~Di~~F~a~yF~   31 (38)
T PF02197_consen    4 QELLKEFTREVLREQPDDILQFAADYFE   31 (38)
T ss_dssp             HHHHHHHHHHHHHH--S-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            4566665 78999999999999999983

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....

>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2

Probab=95.44  E-value=0.0011  Score=57.64  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=48.4

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL  112 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  112 (377)
                      |.-..+.+..+++|.+.++.+|   |..++.+|.+|  +.|+.+|.|.|.+-|-++|++.
T Consensus        35 k~~~lt~e~a~~~y~~~~~~~~---~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~d   91 (135)
T PF00334_consen   35 KMVQLTREEAREFYEEHKGKPF---FDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTD   91 (135)
T ss_dssp             EEEEETHHHHHHHTGGGTTSTT---HHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SS
T ss_pred             hhhhhhHHHHheEEEeecCCcc---eecccceeecCCcEEEEeecchhhHHHHHhcCCcc
Confidence            4556777888899999999998   99999999999  9999999999999999999887

7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....

>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit

Probab=94.74  E-value=0.051  Score=37.94  Aligned_cols=30  Identities=13%  Similarity=0.260  Sum_probs=23.4

Q ss_pred             hhHHHHHHHHHHHhCCCChHHHHHHHHHHc
Q psy4316         331 YPTLQKGLAELVRMKPAHSYEWFVNWLLEN  360 (377)
Q Consensus       331 ~P~L~~gL~el~k~rP~dPv~~La~~Ll~n  360 (377)
                      .+.|..-..++++.+|.||++|.|+|+-+-
T Consensus         4 ~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL   33 (38)
T smart00394        4 QALLEDLTVEVLRAQPSDLVQFAADYFEKL   33 (38)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            344455556799999999999999999543

RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).

>PTZ00378 hypothetical protein; Provisional

Probab=87.49  E-value=0.7  Score=49.47  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=38.0

Q ss_pred             hhHhhhhhh-cchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316         320 LAHKIYLRE-FVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP  362 (377)
Q Consensus       320 ~~~r~YL~~-~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP  362 (377)
                      ..-++|+++ .+--+|.+++.+|.+.||.||..+||.|+.+.-.
T Consensus         4 ~~~~~y~~~~~~~~~l~ea~~~~v~~~~~d~~~~l~~~f~~~~~   47 (518)
T PTZ00378          4 VSWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCS   47 (518)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcC
Confidence            456889988 7889999999999999999999999999987643

>KOG4109|consensus

Probab=84.17  E-value=0.5  Score=41.27  Aligned_cols=51  Identities=24%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             chhhHhhhhhhcchhHHHHHHHHHHHhCCCCh-----HHHHHHHHHHcCCCCCCCC
Q psy4316         318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHS-----YEWFVNWLLENDPFSPKLK  368 (377)
Q Consensus       318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dP-----v~~La~~Ll~nNP~~p~~~  368 (377)
                      +..++++|+.+..-|.|+.|...+++.+|..|     +.+|+..+...+-+..+..
T Consensus         3 ~~~pa~~~~~~~et~~l~ng~s~~a~n~~~~~~~t~sv~~l~q~~~~~~a~~~k~k   58 (116)
T KOG4109|consen    3 SSSPARQYLPEAETPVLLNGMSIAARNPPEEPGSTQSVNFLSQNLKIANANQQKPK   58 (116)
T ss_pred             ccccccccCccccchhhhhhhhhhccCCccccccccchHHhhhhhhhhhhhhcCcc
Confidence            46789999999999999999999999999998     9999999988876655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
3ztq_A	142	Hexagonal Crystal Form P61 Of The Aquifex Aeolicus		6e-11
3vgs_A	141	Wild-Type Nucleoside Diphosphate Kinase Derived Fro		3e-07
3vgu_A	141	E134a Mutant Nucleoside Diphosphate Kinase Derived		3e-07
2zua_A	174	Crystal Structure Of Nucleoside Diphosphate Kinase		4e-07
3pj9_A	140	Crystal Structure Of A Nucleoside Diphosphate Kinas		1e-06
4dut_A	145	The Structure Of Nucleoside Diphosphate Kinase (Ndk		8e-06
2az3_A	164	Structure Of A Halophilic Nucleoside Diphosphate Ki		1e-05
2az1_A	181	Structure Of A Halophilic Nucleoside Diphosphate Ki		1e-05
2hur_A	142	Escherichia Coli Nucleoside Diphosphate Kinase Leng		5e-04
2vu5_A	148	Crystal Structure Of Pndk From Bacillus Anthracis L		9e-04

>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 161 CYEYTLALVKPHAFRHV---EDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPV 217
             E TL +VKP A       + +++ IQE              PE+A EF+    ER   
Sbjct: 2   AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFT-PEKAGEFYYVHRERPFF 60
Query: 218 KVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNA 277
           +   LV +M SGPV   VL  + AI+R   ++GP D ++A+++ P S+RA++G +   NA
Sbjct: 61  Q--ELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNA 118
Query: 278 IYGSRNEEEA 287
           I+ S + E A
Sbjct: 119 IHASDSPESA 128

>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
           E TL+++KP A     + +IE   ++               EQA  F+   +ER P    
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKER-PF-FG 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV V VL  + AI     LMG  +P +A+     ++RA Y  +   NA++G
Sbjct: 62  DLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAE---AGTIRADYAQSIDANAVHG 118
Query: 281 SRNEEEAA 288
           S + E AA
Sbjct: 119 SDSPESAA 126

>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
           E TL+++KP A     + +IE   ++               EQA  F+   +ER P    
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKER-PF-FG 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV V VL  + AI     LMG  +P +A+     ++RA Y  +   NA++G
Sbjct: 62  DLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAE---AGTIRADYAQSIDANAVHG 118
Query: 281 SRNEEEAA 288
           S + E AA
Sbjct: 119 SDSPESAA 126

>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Haloarcula Quadrata Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 153 APIVQNLHCYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFIT 210
            P   ++  +E T  +VKP   +   + DI    ++               E A E +  
Sbjct: 15  VPRGSHMSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHY-- 72
Query: 211 REERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYG 270
            E  D      LV ++ SGPV  MV   Q A R+   +MG  DP ++    P ++R  YG
Sbjct: 73  GEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESA---PGTIRGDYG 129
Query: 271 VNDIMNAIYGSRNEEEAA 288
           ++   N I+GS +E+E A
Sbjct: 130 LDLGRNVIHGSDHEDEGA 147

>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From Campylobacter Jejuni Length = 140

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 161 CYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVK 218
             E TL+++KP A +   +  I    +                EQA  F+   +ER   K
Sbjct: 3   AMEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFK 62
Query: 219 VPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAI 278
              LV +M+SGPV V +L  + A+ +   LMG  +P +AK     ++RA +  +   NA+
Sbjct: 63  --DLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAK---AGTIRADFAESIDANAV 117
Query: 279 YGSRNEEEA 287
           +GS + E A
Sbjct: 118 HGSDSLENA 126

>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis Length = 145

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 161 CYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVK 218
             E TL+++KP A     +  I    +                  A +F+    ER   K
Sbjct: 6   ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFK 65
Query: 219 VPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAI 278
              LV +M+SGPV + VL  + AI +   LMG  DP KA++    ++RA +  +   NA+
Sbjct: 66  --DLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEK---GTIRADFADSIDANAV 120
Query: 279 YGSRNEEEA 287
           +GS   E A
Sbjct: 121 HGSDAPETA 129

>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum In Complex With Cdp Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   + DI   ++                E A E +   E++ P    
Sbjct: 9   ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK-PF-FD 66
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV     A R+   LMG  D   A+   P ++R  YG +   N I+G
Sbjct: 67  GLVSFITSGPVFAMVWEGADATRQVRQLMGATD---AQDAAPGTIRGDYGNDLGHNLIHG 123
Query: 281 SRNEEEAA 288
           S +E+E A
Sbjct: 124 SDHEDEGA 131

>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   + DI   ++                E A E +   E++ P    
Sbjct: 26  ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK-PF-FD 83
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV     A R+   LMG  D   A+   P ++R  YG +   N I+G
Sbjct: 84  GLVSFITSGPVFAMVWEGADATRQVRQLMGATD---AQDAAPGTIRGDYGNDLGHNLIHG 140
Query: 281 SRNEEEAA 288
           S +E+E A
Sbjct: 141 SDHEDEGA 148

>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
           LV +M SGP+ V VL  + A++R   L+G  +P  A      +LRA Y  +   N  +GS
Sbjct: 62  LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGS 118
Query: 282 RNEEEAA 288
            + E AA
Sbjct: 119 DSVESAA 125

>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis Length = 148

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   + +I    ++              PE A + +   EE+ P    
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEK-PF-FG 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV   +  +    ++MG   P +A    P ++R  +GV    N I+G
Sbjct: 60  ELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHG 116
Query: 281 SRNEEEA 287
           S + E A
Sbjct: 117 SDSLESA 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	2e-28
4ek2_A	145	Nucleoside diphosphate kinase; seattle structural	5e-26
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	8e-26
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	2e-25
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	3e-25
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	9e-25
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	1e-24
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	2e-24
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	2e-24
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	2e-24
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	2e-24
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	3e-24
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	3e-24
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	3e-24
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	3e-24
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	5e-24
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	5e-24
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	6e-24
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	6e-24
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	7e-24
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	7e-24
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	8e-24
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	1e-23
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	2e-23
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	2e-23
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	2e-23
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	3e-23
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	2e-22
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	7e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3g36_A	55	Protein DPY-30 homolog; X-type four-helix bundle,	5e-07

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Length = 142

 Score =  106 bits (268), Expect = 2e-28
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL +VKP A     +  I     ++GF I   K F+FTPE+A EF+    ER P    
Sbjct: 4   ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRER-PF-FQ 61

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGPV   VL  + AI+R   ++GP D ++A+++ P S+RA++G +   NAI+ 
Sbjct: 62  ELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHA 121

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A  +I F F  
Sbjct: 122 SDSPESAQYEICFIFSG 138

>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center for infectious disease, S DAMP, niaid; HET: DA; 2.00A {Burkholderia thailandensis} PDB: 4dut_A* Length = 145

 Score =  101 bits (253), Expect = 5e-26
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL+++KP A     +  I    +  G  IV  +    +   A +F+    ER P    
Sbjct: 8   ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAER-PF-FK 65

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M+SGPV + VL  + AI +   LMG  DP KA+     ++RA +  +   NA++G
Sbjct: 66  DLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAE---KGTIRADFADSIDANAVHG 122

Query: 281 SRNEEEAARDIRFFFKD 297
           S   E A  +I FFF +
Sbjct: 123 SDAPETARVEIAFFFPE 139

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142

 Score =  100 bits (251), Expect = 8e-26
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T +++KP+A     + +I    +  GF IV  K    T EQA  F+   + + P    
Sbjct: 3   ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGK-PF-FD 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M SGP+ V VL  + A++R   L+G  +P  A      +LRA Y  +   N  +G
Sbjct: 61  GLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANAL---AGTLRADYADSLTENGTHG 117

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E AAR+I +FF +
Sbjct: 118 SDSVESAAREIAYFFGE 134

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Length = 144

 Score = 99.1 bits (248), Expect = 2e-25
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL+++KP       +  I    +EKG   V  +    +  QA  F+   + R P    
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKAR-PF-FK 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M+SGPV +MVL  + A+     +MG  +P +A      ++R  +  +   N ++G
Sbjct: 61  DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAA---EGTIRKDFATSIDKNTVHG 117

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A  +I +FF++
Sbjct: 118 SDSLENAKIEIAYFFRE 134

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151

 Score = 98.8 bits (247), Expect = 3e-25
 Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP A   R +  I Q  +EKG  +   K      E     +       P    
Sbjct: 6   ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSM-PF-FS 63

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            +V  M+SG V  MV   + A+     L+G  +P  A      ++R  YGV+   N I+G
Sbjct: 64  EMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAAS---VGTIRGDYGVSTGKNIIHG 120

Query: 281 SRNEEEAARDIRFFFKDIIIEPSNAMESDI 310
           S   E A ++I+ +  D +   S   +  I
Sbjct: 121 SDCVENAEKEIKLWIGDDVQPVSFFDKEWI 150

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137

 Score = 97.2 bits (243), Expect = 9e-25
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP       V +I    + KGF I   K  + + E A   +    E+ P   P
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREK-PF-FP 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MVL     +     +MG   P  A    P ++R  +      N I+G
Sbjct: 60  GLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S   E+A R+I  FF+ 
Sbjct: 117 SATLEDAQREIALFFRP 133

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149

 Score = 97.2 bits (243), Expect = 1e-24
 Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP       + ++    ++KGFT+   K        A + +     +      
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSK-SF-FS 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y+VSGPV  M+   +  +     ++G  +P  ++   P ++R  + ++   N I+G
Sbjct: 60  GLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHG 116

Query: 281 SRNEEEAARDIRFFFKDIIIEPSNAMESDI 310
           S + E A ++I  +F D  +   +++   +
Sbjct: 117 SDSVESARKEIALWFPDGPVNWQSSVHPWV 146

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   VKP     R V +I +  + KGF +V  K  + + E   E +    ER P    
Sbjct: 22  ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRER-PF-YG 79

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
           RLV YM SGPV  MV      +R    L+G  +P  A    P ++R  + +    N I+G
Sbjct: 80  RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHG 136

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  +F+ 
Sbjct: 137 SDSVESARREIALWFRA 153

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL ++KP A     + +I    ++KG  IV  K      E A + +    E+ P    
Sbjct: 8   ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREK-PF-FK 65

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN---DIMNA 277
            L+ Y+   PV VMVL  + A+     + G  DP  A    P ++R  +G+     I N 
Sbjct: 66  ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNV 122

Query: 278 IYGSRNEEEAARDIRFFFKD 297
           I+ S ++E A R+I  FFK 
Sbjct: 123 IHASDSKESAEREISLFFKP 142

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL  VKP     R V D+ Q  + +GFT+V  K  +      AE +     + P   P
Sbjct: 25  ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRK-PF-YP 82

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ YM SGPV  MV      +R    ++G  D  +A    P ++R  + V+   N I+ 
Sbjct: 83  ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHA 139

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I+ +F+ 
Sbjct: 140 SDSVEGAQREIQLWFQS 156

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Length = 161

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   VKP       V +I +  + KG+ +V  K  + T EQA + +I    + P    
Sbjct: 12  ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASK-PF-YS 69

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y  SGP+  MV      ++    L+G  +P  +    P ++R  + V+   N  +G
Sbjct: 70  GLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSL---PGTIRGDFAVDVGRNVCHG 126

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I F+FK 
Sbjct: 127 SDSVESAKREIAFWFKA 143

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150

 Score = 96.5 bits (241), Expect = 3e-24
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E +  ++KP       + DI    ++KGF +   K        A + +    ++ P   P
Sbjct: 3   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDK-PF-FP 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y++SGPV  MV   +  +     ++G   P +A    P ++RA Y V    N I+G
Sbjct: 61  GLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHG 117

Query: 281 SRNEEEAARDIRFFFKDIIIEPSNAMESDI 310
           S + +   ++I  +F + + E  + +   I
Sbjct: 118 SDSVDNGKKEIALWFPEGLAEWRSNLHPWI 147

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151

 Score = 96.4 bits (241), Expect = 3e-24
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP       V +I +  ++KGF +V  K  + + E   + +I  ++R P   P
Sbjct: 4   ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDR-PF-FP 61

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV YM SGPV  MV      ++    ++G  +P  +K   P ++R  + +    N I+G
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHG 118

Query: 281 SRNEEEAARDIRFFFKD 297
           S + + A ++I  +FK 
Sbjct: 119 SDSVKSAEKEISLWFKP 135

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Length = 190

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           + TL +VKP       + D+    +  G  +V  K        A + ++  +        
Sbjct: 27  QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEA 86

Query: 221 ---RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN----- 272
               L+ ++ + PV   V+   ++I     L G  +P  A    P ++R  +  +     
Sbjct: 87  VWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAI---PGTIRGDFSYHSFKYS 143

Query: 273 -----DIMNAIYGSRNEEEAARDIRFFFKD 297
                 I N I+ S NE +A R+I  +FKD
Sbjct: 144 NEKGFSIYNVIHASANEADAMREIPIWFKD 173

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       + +I    ++KGF +V  K  + TPE A + +   EE+ P    
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEK-PF-FG 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV   +  +    ++MG   P +A    P ++R  +GV    N I+G
Sbjct: 60  ELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  FFK+
Sbjct: 117 SDSLESAEREIGIFFKE 133

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} Length = 155

 Score = 95.7 bits (239), Expect = 5e-24
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       V +I    + +GF +V  K F  +     E +     R P    
Sbjct: 8   ERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAAR-PF-FA 65

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  ++ SGPV  MV      +     +MG   P ++    P ++R  +G++   N I+G
Sbjct: 66  GLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESA---PGTIRGDFGIDVGRNIIHG 122

Query: 281 SRNEEEAARDIRFFFKD 297
           S N ++AAR+I  +FK 
Sbjct: 123 SANLDDAAREIALWFKP 139

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136

 Score = 95.3 bits (238), Expect = 5e-24
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL L+KP     + + +I   I+ KG TI   +    + E A++ +   E + P    
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGK-PF-FG 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ ++ SGPV   ++   +AI     L G  DP +A    P ++R  + +    N ++G
Sbjct: 61  SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAA--PGTIRGDFALETQFNLVHG 118

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  +F  
Sbjct: 119 SDSAESAQREIALWFPG 135

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155

 Score = 95.7 bits (239), Expect = 6e-24
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   VKP       V +I    ++KGF +V  K    T + A   +   +ER P    
Sbjct: 9   ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKER-PF-FG 66

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV   +  +     ++G  +P  +    P S+R  +GV+   N I G
Sbjct: 67  GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIGG 123

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  +FK 
Sbjct: 124 SDSVESANREIALWFKP 140

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP       V +I +  ++KGF +V  K  + + +   E ++  ++R P    
Sbjct: 25  ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDR-PF-FA 82

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV YM SGPV  MV      ++    ++G  +P  +K   P ++R  + +    N I+G
Sbjct: 83  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHG 139

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A ++I  +F  
Sbjct: 140 SDSVESAEKEIGLWFHP 156

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP       + +I    + KGF +V  K    T + A + +   +ER P    
Sbjct: 33  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKER-PF-FN 90

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  ++ SGPV  MV   +  I     L+G  DP K+    P ++R    V    N I+G
Sbjct: 91  GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHG 147

Query: 281 SRNEEEAARDIRFFFKD 297
           S   E A  +I+ +FK 
Sbjct: 148 SDGPETAKDEIKLWFKP 164

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} Length = 156

 Score = 95.3 bits (238), Expect = 7e-24
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       + +I +  + KG  ++  K    T +  A+ +   +++ P    
Sbjct: 10  ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDK-PF-FK 67

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  ++  GPV  M+    +AI+   +L+G   P ++      ++R  +GV    N ++ 
Sbjct: 68  DLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESA---AGTIRGDFGVVKNFNIVHA 124

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E+AAR+   +F  
Sbjct: 125 SSSAEDAARECALWFTP 141

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153

 Score = 95.3 bits (238), Expect = 8e-24
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       V +I    ++KGF ++  K F+   E A E +     +     P
Sbjct: 6   EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAK-SF-FP 63

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ Y+ SGPV  M       +     L+G  DP +A+   P ++R    V    N ++G
Sbjct: 64  NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHG 120

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E   R+I  +FK+
Sbjct: 121 SDSPENGKREIGLWFKE 137

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   VKP       V  I    ++KG+ +V  K  K   +   + +     + P   P
Sbjct: 14  ERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGK-PF-FP 71

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
           ++V +M SGP+   V   +  +R+   ++G  +P  +    P ++R  +G++   N  +G
Sbjct: 72  KMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA---PGTIRGDFGIDLGRNVCHG 128

Query: 281 SRNEEEAARDIRFFFKD 297
           S + + A R+I  +FK 
Sbjct: 129 SDSVDSAEREINLWFKK 145

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVK-KKTFKFTPEQAAEFFITREERDPVKV 219
           + TL L+KP AF    V +I   I++K F IV  K   K       + +    E+     
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQ-SY-F 64

Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
                +MVSGP+  +V     AI +   L G  +P  +    P ++R     +   N I+
Sbjct: 65  NDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASA---PGTIRGDLANDIRENLIH 121

Query: 280 GSRNEEEAARDIRFFFKD 297
            S +E+ A  +I  +F +
Sbjct: 122 ASDSEDSAVDEISIWFPE 139

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Length = 157

 Score = 94.6 bits (236), Expect = 2e-23
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP A     + ++   I+ KG  +V  K  +   E A   +   + + P    
Sbjct: 2   ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGK-PF-YN 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ ++ S PV  MV+  + A+    H++G  +P +A    P S+R   G+    N I+G
Sbjct: 60  DLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  +F +
Sbjct: 117 SDSLESAEREINLWFNE 133

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       V ++ +  + KG  +   K    + + AA  +       P    
Sbjct: 3   ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGG-PF-FG 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV    SGPV  MV     A      ++G  +P  A    P ++R  +GV+   NAI+G
Sbjct: 61  GLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHG 117

Query: 281 SRNEEEAARDIRFFFKD 297
           S +   AA++I  FF  
Sbjct: 118 SDSAGSAAKEIGAFFGG 134

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Length = 157

 Score = 93.8 bits (234), Expect = 3e-23
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E +  ++KP       V  I +  ++KG+ ++  K    T E   E +    ++ P    
Sbjct: 10  EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQ-PF-FK 67

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y+  GPV  MV      +++   L+G  +P  +      ++R  + +    N I+G
Sbjct: 68  NLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHG 124

Query: 281 SRNEEEAARDIRFFFKD 297
           S +   A ++I  +FK 
Sbjct: 125 SDSVASANKEINIWFKA 141

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP       + DI   ++ KG  +V  K  +   E A E +   E++ P    
Sbjct: 9   ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK-PF-FD 66

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV     A R+   LMG  D   A    P ++R  YG +   N I+G
Sbjct: 67  GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHG 123

Query: 281 SRNEEEAA--RDIRFFFKD 297
           S +E+E A  R+I  FF D
Sbjct: 124 SDHEDEGANEREIALFFDD 142

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195

 Score = 83.0 bits (205), Expect = 7e-19
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 46/178 (25%)

Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV- 219
           E TL ++KP A     V++I    ++ G  IV  K  K +PE+   F+ + EE       
Sbjct: 16  EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 75

Query: 220 ------------------------------PRLVCYMVSGPVRVMVLAKQKAIRRWLHLM 249
                                           LV YM SGP  VMVL   +A+     L+
Sbjct: 76  KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 135

Query: 250 GPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKD 297
           GP  P  A    P ++R  Y ++           + N ++ S +  EA R+IRF+F++
Sbjct: 136 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 58/408 (14%), Positives = 113/408 (27%), Gaps = 108/408 (26%)

Query: 26  KTENRIKDDDNEDEEEKQNYMERGPHSFSKTGAWSADNFDG---DVADLRHSEF------ 76
           KTE R          E+++ +      F+K        +      + +LR ++       
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 77  ----RSW-------FYRQCLCMYHGIEYVYNGLNPIKVSKWPLPPPL--PIWSLSGSSSG 123
               ++W        Y+    M   I +       + +     P  +   +  L      
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 124 SVT-LPDSTPNIVQERSEAESVK-------------LDGDEVPAP-IVQ--NLHCYEYTL 166
           + T   D + NI       ++               L    V         NL C    L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KIL 269

Query: 167 ALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYM 226
              +   F+ V D          ++        TP++     +   +  P  +PR V   
Sbjct: 270 LTTR---FKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVL-- 323

Query: 227 VSGPVRVMVLA---KQKAIR--RWLHLMGPVDPDKAKRI--------YPLSLRAKY---- 269
            + P R+ ++A   +        W H    V+ DK   I         P   R  +    
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 270 ----GVN---DIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAH 322
                 +    +++ I+    + +    +    K           S +  +P  ++    
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK----------YSLVEKQPKESTISIP 429

Query: 323 KIYLREFVYPTLQKGLAELVRMKPAH-----SYEWFVNWLLENDPFSP 365
            IYL       L+  L     +   H      Y     +  ++D   P
Sbjct: 430 SIYLE------LKVKLENEYAL---HRSIVDHYNIPKTF--DSDDLIP 466

>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} Length = 55

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 325 YLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362
           YL + V P L +G+A L + +P +  E+  ++LL+N  
Sbjct: 12  YLDQTVVPILLQGMAVLAKERPPNPIEFLASYLLKNKA 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
4hr2_A	145	Nucleoside diphosphate kinase; ssgcid, seattle str	100.0
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	100.0
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	100.0
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	100.0
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	100.0
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	100.0
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	100.0
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	100.0
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	100.0
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	100.0
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	100.0
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	100.0
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	100.0
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	100.0
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	100.0
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	100.0
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	100.0
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	100.0
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	100.0
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	100.0
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	100.0
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	100.0
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	100.0
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	100.0
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	100.0
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	100.0
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	100.0
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	100.0
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	100.0
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	99.96
3g36_A	55	Protein DPY-30 homolog; X-type four-helix bundle,	99.71
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	98.41
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	98.36
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	98.34
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	98.32
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	98.3
4hr2_A	145	Nucleoside diphosphate kinase; ssgcid, seattle str	98.3
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	98.28
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	98.27
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	98.27
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	98.25
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	98.25
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	98.23
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	98.22
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	98.21
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	98.2
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	98.2
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	98.2
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	98.19
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	98.19
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	98.18
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	98.17
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	98.16
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	98.16
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	98.13
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	98.12
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	98.12
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	98.12
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	98.01
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	97.48
4f9k_A	95	CAMP-dependent protein kinase type I-beta regulat	96.77
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	96.34
2izx_A	41	CAMP-dependent protein kinase type II-alpha regula	94.15
2kyg_A	50	CAMP-dependent protein kinase type II-alpha regul	93.79
2izy_A	54	CAMP-dependent protein kinase regulatory subunit I	93.61
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	85.23

>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*

Probab=100.00  E-value=2.3e-46  Score=330.71  Aligned_cols=136  Identities=31%  Similarity=0.477  Sum_probs=131.6

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++|++||+||||+||+|+
T Consensus         5 m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvva~vle   82 (145)
T 4hr2_A            5 MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYA--VHAERPFFKDLVEFMISGPVMIQVLE   82 (145)
T ss_dssp             CCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             chHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HHhcCchHHHHHHHhcCCCEEEEEEE
Confidence            34799999999999987  799999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |+|||+.||+|+|||||..|   .|+|||++||.+..+|+||||||+++|++||.||||+..+
T Consensus        83 g~~aV~~~R~l~G~tdp~~A---~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei  142 (145)
T 4hr2_A           83 GEDAILKNRDLMGATDPKKA---EKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNV  142 (145)
T ss_dssp             EETHHHHHHHHHCCSSTTTS---CTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGC
T ss_pred             cCCcHhHHhhccCCCCcccC---CCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhc
Confidence            99999999999999999999   6999999999999999999999999999999999998655

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A

Probab=100.00  E-value=2.5e-46  Score=329.18  Aligned_cols=136  Identities=38%  Similarity=0.605  Sum_probs=132.9

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++|++||+||||+||+|+|+
T Consensus         3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~--~~~~kpff~~Lv~~mtSGPvva~vl~g~   80 (142)
T 3ztp_A            3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYY--VHRERPFFQELVEFMSSGPVVAAVLEGE   80 (142)
T ss_dssp             EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEeCC
Confidence            699999999999986  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      |||+.||+++|||||..|+..+|+|||++||.+..+|+||||||+++|.+||.||||+..
T Consensus        81 naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e  140 (142)
T 3ztp_A           81 DAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLE  140 (142)
T ss_dssp             THHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCccc
Confidence            999999999999999999999999999999999999999999999999999999999754

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...

Probab=100.00  E-value=1.1e-45  Score=326.58  Aligned_cols=137  Identities=27%  Similarity=0.395  Sum_probs=128.2

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeec-CHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKF-TPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~L-s~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++| |+++|++||.  +|++++||+.|++||+||||+||+|+
T Consensus         5 ~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vle   82 (146)
T 3evo_A            5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYK--EHSEQSYFNDNCDFMVSGPIISIVYE   82 (146)
T ss_dssp             -CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             cceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEe
Confidence            4799999999999986  79999999999999999999999 9999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP  302 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep  302 (377)
                      |+|||+.||+|||||||..|   +|+|||++||.+..+|+||||||+++|.+||.||||...++|
T Consensus        83 g~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~  144 (146)
T 3evo_A           83 GTDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMET  144 (146)
T ss_dssp             ETTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC------
T ss_pred             CCCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcCC
Confidence            99999999999999999999   899999999999999999999999999999999999887765

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...

Probab=100.00  E-value=9.6e-45  Score=323.48  Aligned_cols=141  Identities=28%  Similarity=0.379  Sum_probs=134.4

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++|++||+||||+||+|+
T Consensus         6 ~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvle   83 (155)
T 3fkb_A            6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYA--EHKERPFFGGLVSFITSGPVVAMVFE   83 (155)
T ss_dssp             CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             cccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEe
Confidence            34799999999999986  799999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |+|||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.|||.+||++..+.+...
T Consensus        84 g~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~  148 (155)
T 3fkb_A           84 GKGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVK  148 (155)
T ss_dssp             STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCC
T ss_pred             CCCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccc
Confidence            99999999999999999988   899999999999999999999999999999999999876655543

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*

Probab=100.00  E-value=9.4e-45  Score=324.16  Aligned_cols=139  Identities=27%  Similarity=0.434  Sum_probs=133.6

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+|+
T Consensus         1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~   78 (157)
T 3q8u_A            1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYG--EHQGKPFYNDLISFITSAPVFAMVVEGE   78 (157)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHCCCccHHHHHHHhcCCCEEEEEEeCC
Confidence            489999999999986  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.|||++..+.....
T Consensus        79 naV~~~R~l~GpTdp~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~  141 (157)
T 3q8u_A           79 DAVNVSRHIIGSTNPSEA---SPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYAS  141 (157)
T ss_dssp             THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred             CHHHHHHHHcCCCChhhc---CCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhccccc
Confidence            999999999999999999   799999999999999999999999999999999999877765544

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0

Probab=100.00  E-value=9.9e-45  Score=322.13  Aligned_cols=135  Identities=27%  Similarity=0.354  Sum_probs=129.8

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|+|
T Consensus         4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg   81 (151)
T 3mpd_A            4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYS--HLSSMPFFSEMVEDMMSGMVLAMVWVG   81 (151)
T ss_dssp             -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHH--HHcCCccHHHHHHHhcCCCEEEEEEeC
Confidence            3799999999999986  899999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC-CCcc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK-DIII  300 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp-~~~~  300 (377)
                      +|||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.|||+ +..+
T Consensus        82 ~naV~~~R~l~G~t~p~~a---~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~  141 (151)
T 3mpd_A           82 KDAVSIGRKLIGETNPQAA---SVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQP  141 (151)
T ss_dssp             TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCC
T ss_pred             CcHHHHHHHHhCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchh
Confidence            9999999999999999988   899999999999999999999999999999999998 5444

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*

Probab=100.00  E-value=8.7e-45  Score=317.53  Aligned_cols=133  Identities=32%  Similarity=0.509  Sum_probs=129.4

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtsGPvva~vl~g~   78 (137)
T 1wkj_A            1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYA--EHREKPFFPGLVRFITSGPVVAMVLEGP   78 (137)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGSSSSSHHHHHHHHTSSCEEEEEEEST
T ss_pred             CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEeCC
Confidence            489999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      |||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.+||++..
T Consensus        79 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e  135 (137)
T 1wkj_A           79 GVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEE  135 (137)
T ss_dssp             THHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGG
T ss_pred             cHHHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhh
Confidence            999999999999999999   899999999999999999999999999999999998754

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1

Probab=100.00  E-value=1.6e-44  Score=315.50  Aligned_cols=131  Identities=28%  Similarity=0.457  Sum_probs=128.3

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~   79 (136)
T 1k44_A            2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYA--EHEGKPFFGSLLEFITSGPVVAAIVEGT   79 (136)
T ss_dssp             CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHTTTSCEEEEEEEET
T ss_pred             ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEeCC
Confidence            589999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChh-hhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316         240 KAIRRWLHLMGPVDPD-KAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD  297 (377)
Q Consensus       240 NAV~~wReLiGPtdP~-~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~  297 (377)
                      |||+.||+++|||||. .|   .|+|||++||.+..+|+||||||+++|.+||.+||++
T Consensus        80 ~aV~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~  135 (136)
T 1k44_A           80 RAIAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG  135 (136)
T ss_dssp             THHHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence            9999999999999999 88   8999999999999999999999999999999999986

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*

Probab=100.00  E-value=1.5e-44  Score=324.07  Aligned_cols=139  Identities=29%  Similarity=0.408  Sum_probs=132.8

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      ..|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|+|
T Consensus        10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg   87 (161)
T 4fkx_A           10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYI--DLASKPFYSGLVSYFSSGPIVGMVWEG   87 (161)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCccHHHHHHHHhCCCcEEEEEec
Confidence            3689999999999986  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      +|||+.||+|+|||||..|   +|+|||++||.+..+|+||||||+++|.|||.|||++..+....
T Consensus        88 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~  150 (161)
T 4fkx_A           88 LGVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWT  150 (161)
T ss_dssp             TTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCC
T ss_pred             cChHHHHHHHhcCCChhhc---CCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhccccc
Confidence            9999999999999999988   89999999999999999999999999999999999876655443

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}

Probab=100.00  E-value=2.2e-44  Score=316.82  Aligned_cols=135  Identities=34%  Similarity=0.507  Sum_probs=130.9

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~   79 (142)
T 2hur_A            2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYA--EHDGKPFFDGLVEFMTSGPIVVSVLEGE   79 (142)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHhcCCCEEEEEEecc
Confidence            489999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE  301 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e  301 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||+...+.
T Consensus        80 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~  138 (142)
T 2hur_A           80 NAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVC  138 (142)
T ss_dssp             THHHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSC
T ss_pred             cHHHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhh
Confidence            999999999999999998   89999999999999999999999999999999999976554

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1

Probab=100.00  E-value=1.3e-44  Score=322.56  Aligned_cols=139  Identities=27%  Similarity=0.418  Sum_probs=104.9

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|+|
T Consensus         6 ~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg   83 (155)
T 3r9l_A            6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYK--EHAARPFFAGLCKFLSSGPVCAMVWEG   83 (155)
T ss_dssp             CSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC-----------------------------CCSCCEEEEEES
T ss_pred             chheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHhcCCCEEEEEEeC
Confidence            3699999999999986  899999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      +|||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.|||++..+....
T Consensus        84 ~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~  146 (155)
T 3r9l_A           84 ANVVSISRTMMGVTKPAES---APGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWS  146 (155)
T ss_dssp             TTHHHHHHHHHCCSCTTTC---CTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC---
T ss_pred             CCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccc
Confidence            9999999999999999988   89999999999999999999999999999999999987665544

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A

Probab=100.00  E-value=3.4e-44  Score=316.35  Aligned_cols=135  Identities=28%  Similarity=0.456  Sum_probs=130.8

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~   79 (144)
T 1nhk_R            2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYA--VHKARPFFKDLVQFMISGPVVLMVLEGE   79 (144)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEecc
Confidence            589999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE  301 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e  301 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||+...+.
T Consensus        80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~  138 (144)
T 1nhk_R           80 NAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH  138 (144)
T ss_dssp             THHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCC
T ss_pred             CHHHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhc
Confidence            999999999999999998   89999999999999999999999999999999999976554

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1

Probab=100.00  E-value=3.5e-44  Score=317.85  Aligned_cols=134  Identities=24%  Similarity=0.405  Sum_probs=129.6

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+|+
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~~~~kpff~~Lv~~mtSGPvva~vleg~   78 (149)
T 1u8w_A            1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYE--DLSSKSFFSGLVDYIVSGPVVAMIWEGK   78 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTC--TTSSSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCcchhHHhHhcCCCEEEEEEecC
Confidence            489999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.+|||+.+.
T Consensus        79 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~  136 (149)
T 1u8w_A           79 NVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPV  136 (149)
T ss_dssp             THHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCC
T ss_pred             CchHHHHHHhCCCCcccC---CCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhCchhhc
Confidence            999999999999999998   8999999999999999999999999999999999976543

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-44  Score=324.75  Aligned_cols=140  Identities=25%  Similarity=0.397  Sum_probs=133.9

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+|
T Consensus        23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg  100 (172)
T 3l7u_A           23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYV--DLKDRPFFAGLVKYMHSGPVVAMVWEG  100 (172)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHSSCEEEEEEES
T ss_pred             hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEeC
Confidence            4799999999999987  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      +|||+.||+|||||||..|   +|+|||++||.+..+|+||||||+++|.+||.|||++..+.....
T Consensus       101 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~  164 (172)
T 3l7u_A          101 LNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTS  164 (172)
T ss_dssp             TTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCC
T ss_pred             CCHHHHHHHHcCCCChhhc---CCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhcccccc
Confidence            9999999999999999988   799999999999999999999999999999999999876655543

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1

Probab=100.00  E-value=4e-44  Score=317.80  Aligned_cols=134  Identities=26%  Similarity=0.438  Sum_probs=129.7

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~   79 (150)
T 1pku_A            2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYA--DLSDKPFFPGLVEYIISGPVVAMVWEGK   79 (150)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSG--GGTTSTTHHHHHHHHHSSCEEEEEEEST
T ss_pred             ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCccHHHHHHhcCCCEEEEEEecc
Confidence            589999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+|||+.++
T Consensus        80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~  137 (150)
T 1pku_A           80 DVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLA  137 (150)
T ss_dssp             THHHHHHHHHCCSSGGGS---CTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHCTTCCC
T ss_pred             chHHHHHHHhCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCcHHhc
Confidence            999999999999999998   8999999999999999999999999999999999976543

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}

Probab=100.00  E-value=3.4e-44  Score=317.49  Aligned_cols=137  Identities=31%  Similarity=0.496  Sum_probs=131.5

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~   78 (148)
T 2vu5_A            1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYA--EHEEKPFFGELVDFITSGPVFAMVWQGE   78 (148)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGG--GTTTCTHHHHHHHHHTTCCEEEEEEEST
T ss_pred             CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence            489999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      |||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus        79 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  139 (148)
T 2vu5_A           79 GVVDTARNMMGKTRPHEA---APGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDY  139 (148)
T ss_dssp             THHHHHHHHHCCSSTTTS---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCC
T ss_pred             ChHHHHHHHhCCCCcccc---CCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhcccc
Confidence            999999999999999997   8999999999999999999999999999999999997665433

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1

Probab=100.00  E-value=7.9e-44  Score=318.18  Aligned_cols=139  Identities=24%  Similarity=0.390  Sum_probs=132.1

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+
T Consensus         7 ~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle   84 (157)
T 1xiq_A            7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYK--ELSDQPFFKNLVAYISKGPVVAMVWE   84 (157)
T ss_dssp             --CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGSSSSSCTTHHHHHTTSCEEEEEEE
T ss_pred             chhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHHcCCCEEEEEEe
Confidence            34799999999999988  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      |+|||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus        85 g~naV~~~R~l~G~T~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  147 (157)
T 1xiq_A           85 GVDMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQW  147 (157)
T ss_dssp             STTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCC
T ss_pred             cccchHHHHHHcCCCCCCcC---CCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccc
Confidence            99999999999999999999   8999999999999999999999999999999999997665433

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*

Probab=100.00  E-value=9.5e-44  Score=316.27  Aligned_cols=138  Identities=28%  Similarity=0.413  Sum_probs=132.5

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+|
T Consensus         4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg   81 (153)
T 1s57_A            4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYK--DLSAKSFFPNLIEYITSGPVVCMAWEG   81 (153)
T ss_dssp             CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSSSHHHHHHHHTSSCEEEEEEEE
T ss_pred             ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHH--HhcCCCcchhHHHHhcCCCEEEEEEec
Confidence            4699999999999988  899999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      +|||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus        82 ~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  143 (153)
T 1s57_A           82 VGVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKW  143 (153)
T ss_dssp             TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCC
T ss_pred             ccHHHHHHHHhCCCCcccc---CCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccc
Confidence            9999999999999999999   7999999999999999999999999999999999998765433

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*

Probab=100.00  E-value=1e-43  Score=315.52  Aligned_cols=135  Identities=27%  Similarity=0.454  Sum_probs=130.6

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||+++++++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~   80 (151)
T 3bbb_A            3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFPGLVKYMNSGPVVAMVWEGL   80 (151)
T ss_dssp             TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHHccCCEEEEEEecC
Confidence            699999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE  301 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e  301 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..+.
T Consensus        81 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~  139 (151)
T 3bbb_A           81 NVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELV  139 (151)
T ss_dssp             THHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSC
T ss_pred             CHHHHHHHHhCCCCcccC---CCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcc
Confidence            999999999999999998   69999999999999999999999999999999999876553

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1

Probab=100.00  E-value=5.4e-44  Score=316.95  Aligned_cols=137  Identities=28%  Similarity=0.368  Sum_probs=131.7

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++|++++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~   79 (150)
T 1nb2_A            2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYA--ELGGGPFFGGLVGGATSGPVFAMVWEGL   79 (150)
T ss_dssp             CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTC--TTSSSTTHHHHHHHHTSSCCBEEEEEST
T ss_pred             ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence            589999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      |||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus        80 naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  140 (150)
T 1nb2_A           80 NAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASG  140 (150)
T ss_dssp             THHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCC
T ss_pred             CHHHHHHHHhCCCCcccC---CCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccc
Confidence            999999999999999997   8999999999999999999999999999999999997665433

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0

Probab=100.00  E-value=1.5e-43  Score=316.14  Aligned_cols=141  Identities=24%  Similarity=0.366  Sum_probs=133.4

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+|++|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+
T Consensus         7 ~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~--~h~~kpff~~Lv~fmtSGPvvamvle   84 (156)
T 3js9_A            7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYC--EHKDKPFFKDLCDFISHGPVFCMIWE   84 (156)
T ss_dssp             --CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHHCCEEEEEEE
T ss_pred             cchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCCEEEEEe
Confidence            34799999999999987  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |+|||+.||+++|||||..|   .|+|||++||++..+|+||||||+++|.+||.|||++..+.+...
T Consensus        85 g~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~  149 (156)
T 3js9_A           85 GPEAIKIGRNLVGLTSPVES---AAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWER  149 (156)
T ss_dssp             ETTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCC
T ss_pred             ccchHHHHHHhcCCCCcccc---CCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccc
Confidence            99999999999999999998   799999999999999999999999999999999999876655443

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1

Probab=100.00  E-value=1.7e-43  Score=317.47  Aligned_cols=134  Identities=31%  Similarity=0.450  Sum_probs=129.8

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      ..|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|+|
T Consensus        23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg  100 (162)
T 1ehw_A           23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQ--DLRRKPFYPALIRYMSSGPVVAMVWEG  100 (162)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEec
Confidence            4699999999999987  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      +|||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..
T Consensus       101 ~naV~~~R~l~G~T~p~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e  158 (162)
T 1ehw_A          101 YNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSE  158 (162)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGG
T ss_pred             hhHHHHHHHHhCCCCCCCC---CCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhh
Confidence            9999999999999999998   899999999999999999999999999999999997643

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-43  Score=317.83  Aligned_cols=139  Identities=24%  Similarity=0.397  Sum_probs=125.9

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ...|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+
T Consensus        11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle   88 (161)
T 3b54_A           11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYA--EHVGKPFFPKMVSFMKSGPILATVWE   88 (161)
T ss_dssp             CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC---------CHHHHHHHHSSCEEEEEEE
T ss_pred             cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHhcCCCEEEEEEe
Confidence            34799999999999987  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      |+|||+.||+++|||||..|   +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus        89 g~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  151 (161)
T 3b54_A           89 GKDVVRQGRTILGATNPLGS---APGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDW  151 (161)
T ss_dssp             STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCC
T ss_pred             ccChHHHHHHHhCCCCcccC---CCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccc
Confidence            99999999999999999998   8999999999999999999999999999999999998665433

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*

Probab=100.00  E-value=3.4e-43  Score=314.85  Aligned_cols=137  Identities=31%  Similarity=0.437  Sum_probs=131.6

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+|||||++++  +|+||++|+++||+|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|+|+
T Consensus         7 ~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~   84 (160)
T 2dxe_A            7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYE--EHREKPFFKALIDYITKTPVVVMVLEGR   84 (160)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             CCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence            599999999999987  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCcc---ceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM---NAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~r---NaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      |||+.||+++|||||..|   +|+|||++||.+..+   |+||||||+++|.+||.+||++..+...
T Consensus        85 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~  148 (160)
T 2dxe_A           85 YAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY  148 (160)
T ss_dssp             THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred             CHHHHHHHHhCCCCCCcC---CCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc
Confidence            999999999999999998   899999999999999   9999999999999999999997655433

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1

Probab=100.00  E-value=4.3e-43  Score=316.73  Aligned_cols=138  Identities=31%  Similarity=0.420  Sum_probs=132.5

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+|||||++++  +|+||++|+++||.|+++||++|++++|++||.  +|++++||++||+||+||||+||+|+
T Consensus        19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle   96 (169)
T 1zs6_A           19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYA--ELRERPFYGRLVKYMASGPVVAMVWQ   96 (169)
T ss_dssp             GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEe
Confidence            44799999999999987  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP  302 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep  302 (377)
                      |+|||+.||+++|||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..+..
T Consensus        97 g~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~  158 (169)
T 1zs6_A           97 GLDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLC  158 (169)
T ss_dssp             STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCC
T ss_pred             cCCchHHHHHHhCCCCcccC---CCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhc
Confidence            99999999999999999998   899999999999999999999999999999999999765543

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1

Probab=100.00  E-value=5e-43  Score=319.59  Aligned_cols=138  Identities=27%  Similarity=0.373  Sum_probs=132.5

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|+
T Consensus        30 ~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle  107 (182)
T 1w7w_A           30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYH--DLKERPFFNGLCDFLSSGPVIAMVWE  107 (182)
T ss_dssp             CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             chhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEe
Confidence            45799999999999987  899999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP  302 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep  302 (377)
                      |+|||+.||++||||||..|   .|+|||++||.+..+|+||||||+++|.+||.+||++..+..
T Consensus       108 G~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~  169 (182)
T 1w7w_A          108 GEGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVS  169 (182)
T ss_dssp             STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred             cccHHHHHHHHhCCCCCCCC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccc
Confidence            99999999999999999999   899999999999999999999999999999999998765543

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A

Probab=100.00  E-value=7.6e-43  Score=313.76  Aligned_cols=139  Identities=32%  Similarity=0.473  Sum_probs=132.9

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||++||+||+||||+||+|+|
T Consensus         7 ~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg   84 (164)
T 2az3_A            7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYA--EHEDKPFFDGLVSFITSGPVFAMVWEG   84 (164)
T ss_dssp             CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             ccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEcc
Confidence            4699999999999998  899999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHH--HHHHHHHhccCCCcccccC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEE--EAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~e--sA~rEi~fFFp~~~~epi~  304 (377)
                      +|||+.||+++|||||..|   +|+|||++||.+..+|+||||||++  +|.+||.+||++..+....
T Consensus        85 ~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~  149 (164)
T 2az3_A           85 ADATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWD  149 (164)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCC
T ss_pred             ccHHHHHHHHhCCCCcccc---CCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccc
Confidence            9999999999999999998   8999999999999999999999999  9999999999986664443

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*

Probab=100.00  E-value=9.2e-43  Score=319.65  Aligned_cols=143  Identities=24%  Similarity=0.380  Sum_probs=134.7

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccc---cccCCCCcccccceeecCcEEEE
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITR---EERDPVKVPRLVCYMVSGPVRVM  234 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~---e~~gk~ff~~LV~~MtSGPvVaL  234 (377)
                      ..+|+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.++   +|++++||+.||+||+||||+||
T Consensus        24 ~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvam  103 (190)
T 4dz6_A           24 MLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTF  103 (190)
T ss_dssp             TTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEE
T ss_pred             chhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEE
Confidence            34799999999999986  89999999999999999999999999999999754   78899999999999999999999


Q ss_pred             EEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCC----------ccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         235 VLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       235 ~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~----------~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      +|+|+|||+.||+|||||||..|   .|+|||++||.+.          .+|+||||||+++|.|||.|||++..+....
T Consensus       104 vleG~naV~~~R~l~GpTdP~~A---~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~  180 (190)
T 4dz6_A          104 VVEGVESIEVVRKLCGATEPKLA---IPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYK  180 (190)
T ss_dssp             EEEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCC
T ss_pred             EEecCCHHHHHHHHcCCCChhhc---CCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhcccc
Confidence            99999999999999999999999   8999999999999          9999999999999999999999987766554


Q ss_pred             C
Q psy4316         305 A  305 (377)
Q Consensus       305 ~  305 (377)
                      .
T Consensus       181 ~  181 (190)
T 4dz6_A          181 R  181 (190)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1

Probab=100.00  E-value=4.8e-40  Score=302.74  Aligned_cols=137  Identities=34%  Similarity=0.526  Sum_probs=129.0

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhccc-----------c----------------
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT-----------R----------------  211 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~-----------~----------------  211 (377)
                      .+|+||+|||||++++  +|+||++|+++||.|+++||+++|+++|++||.+           .                
T Consensus        14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~   93 (195)
T 1xqi_A           14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG   93 (195)
T ss_dssp             CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred             hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence            3699999999999987  8999999999999999999999999999999932           1                


Q ss_pred             ----cccCCCCcccccceeecCcEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCcc----------ce
Q psy4316         212 ----EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM----------NA  277 (377)
Q Consensus       212 ----e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~r----------Na  277 (377)
                          +|++++||+.|++||+||||+||+|+|+|||+.||+++|||||..|   .|+|||++||.+..+          |+
T Consensus        94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N~  170 (195)
T 1xqi_A           94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFNL  170 (195)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCCS
T ss_pred             cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccceE
Confidence                5788999999999999999999999999999999999999999999   799999999999988          99


Q ss_pred             EEcCCCHHHHHHHHHhccCCCcc
Q psy4316         278 IYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       278 VHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      ||||||+++|.|||.+||+...+
T Consensus       171 vHgSDS~esA~rEi~~~F~~~e~  193 (195)
T 1xqi_A          171 VHASDSPSEAEREIRFWFREEEV  193 (195)
T ss_dssp             EEECSSHHHHHHHHHHHCCGGGS
T ss_pred             EEcCCCHHHHHHHHHHhCChhhc
Confidence            99999999999999999987543

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=99.96  E-value=8.9e-30  Score=252.40  Aligned_cols=112  Identities=19%  Similarity=0.300  Sum_probs=106.4

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ...|+||+|||||++++  +|+||++|+++||.|+++||++|++++|++||.  +|+     .+|++||+|||++||+|+
T Consensus       233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~--~h~-----~~Lv~~mtsGPvva~vle  305 (352)
T 3bh7_B          233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFR--EKA-----PDFLPLLNKGPVIALEFN  305 (352)
T ss_dssp             SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHG--GGG-----GGTGGGGGGSCEEEEEEE
T ss_pred             ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHH--HHH-----HHHHHHhccCCEEEEEEE
Confidence            45799999999999998  899999999999999999999999999999999  887     779999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCC
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDI  298 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~  298 (377)
                      |+|||+.||+++|+|+|                    .|+||||||+++|++||.+||+..
T Consensus       306 G~~av~~~R~l~g~t~p--------------------gN~vHgSds~esA~~Ei~~fF~~~  346 (352)
T 3bh7_B          306 GDGAVEVCQLIVNEIFN--------------------GTKMFVSESKETASGDVDSFYNFA  346 (352)
T ss_dssp             STTHHHHHHHHHHHHCT--------------------TSCEEECSCHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHhcCCCC--------------------CceEEecCCHHHHHHHHHHhcCcc
Confidence            99999999999999986                    299999999999999999999753

>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}

Probab=99.71  E-value=4.6e-18  Score=127.71  Aligned_cols=48  Identities=29%  Similarity=0.528  Sum_probs=45.4

Q ss_pred             chhhHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCC
Q psy4316         318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSP  365 (377)
Q Consensus       318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP~~p  365 (377)
                      .+.|+|+||+++|+|+|++||++|||+||.|||+|||+||++|||+-.
T Consensus         5 ~slp~R~YL~~~V~p~L~~GL~~lak~rP~DPi~~LA~~Ll~~~~~~~   52 (55)
T 3g36_A            5 QSLPTRAYLDQTVVPILLQGMAVLAKERPPNPIEFLASYLLKNKAQFE   52 (55)
T ss_dssp             GGSCHHHHHHTTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHGGGGT
T ss_pred             ccCcHHHHHHHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCcccc
Confidence            378999999999999999999999999999999999999999999753

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...

Probab=98.41  E-value=1.5e-08  Score=89.33  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             CCCC-ccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          56 TGAW-SADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        56 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .-.+ |.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        42 ~~~l~s~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p   99 (146)
T 3evo_A           42 FWSKAPRNLIEQHYKEHSEQSY---FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNP   99 (146)
T ss_dssp             EESSCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred             EeccCCHHHHHHHHHHHcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCc
Confidence            3345 99999999999999999   99999999999  99999999999999999999984

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*

Probab=98.36  E-value=2.2e-08  Score=89.69  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...++|.+++++||   |.++|.||.+|  |+|||+|.|.|++.|-|+|+++|
T Consensus        46 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp  103 (161)
T 4fkx_A           46 KLLQPTEEQAKQHYIDLASKPF---YSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNP  103 (161)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHHcCCcc---HHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCCh
Confidence            5556889999999999999999   99999999999  99999999999999999999984

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1

Probab=98.34  E-value=4.6e-08  Score=87.06  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...+||.+++++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        41 ~k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p   99 (155)
T 3r9l_A           41 MKFFVPSKNLVEEHYKEHAARPF---FAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKP   99 (155)
T ss_dssp             EECC------------------------------CCSCCEEEEEESTTHHHHHHHHHCCSCT
T ss_pred             EEEecCCHHHHHHHHHHhcCCcc---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCh
Confidence            46667899999999999999999   99999999999  99999999999999999999984

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0

Probab=98.32  E-value=2.9e-08  Score=87.97  Aligned_cols=56  Identities=16%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+++++||   |.++|.||.+|  |+|||+|.|.|++.|-|+|+++|
T Consensus        40 k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p   97 (151)
T 3mpd_A           40 KCVIPKREVLETHYSHLSSMPF---FSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNP   97 (151)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEEcCCHHHHHHHHHHHcCCcc---HHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCh
Confidence            5557889999999999999999   99999999999  99999999999999999999985

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...

Probab=98.30  E-value=3.6e-08  Score=87.77  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI  114 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
                      .|.-..|.+...+||.+++++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|.
T Consensus        42 ~k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~  101 (155)
T 3fkb_A           42 LKQLVPTKDLAESHYAEHKERPF---FGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPL  101 (155)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred             EEEecCCHHHHHHHHHHhcCCch---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChh
Confidence            35557899999999999999999   99999999999  999999999999999999999843

>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*

Probab=98.30  E-value=3e-08  Score=87.39  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=59.8

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCcccccCCCCCceEecCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDST  131 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~  131 (377)
                      .|.-.+|.+...+||.++++.||   |.++|.||.+|  |+|||+|.|.|++.|-|+|+|+              ..+.+
T Consensus        41 ~k~~~lt~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~td--------------p~~A~  103 (145)
T 4hr2_A           41 ARMAHLSRADAEKFYAVHAERPF---FKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATD--------------PKKAE  103 (145)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSS--------------TTTSC
T ss_pred             EeeecCCHHHHHHHHHHHhcCch---HHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCC--------------cccCC
Confidence            35556889999999999999999   99999999999  9999999999999999999998              44445


Q ss_pred             Cccccccc
Q psy4316         132 PNIVQERS  139 (377)
Q Consensus       132 ~~~~~~r~  139 (377)
                      |.+++++.
T Consensus       104 pgtIR~~f  111 (145)
T 4hr2_A          104 KGTIRADF  111 (145)
T ss_dssp             TTSHHHHH
T ss_pred             CCCcHHHh
Confidence            66666553

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1

Probab=98.28  E-value=6.4e-08  Score=85.58  Aligned_cols=57  Identities=25%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        36 ~k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p   94 (150)
T 1nb2_A           36 AKLMVISKDGAAAHYAELGGGPF---FGGLVGGATSGPVFAMVWEGLNAAATARQILGATNP   94 (150)
T ss_dssp             EECCCCTTHHHHHHTCTTSSSTT---HHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence            35567888999999999999999   99999999999  99999999999999999999984

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}

Probab=98.27  E-value=4.8e-08  Score=88.38  Aligned_cols=56  Identities=29%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|++...++|.+++++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        59 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp  116 (172)
T 3l7u_A           59 KFMQASEDLLKEHYVDLKDRPF---FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNP  116 (172)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEEeCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCh
Confidence            4556889999999999999999   99999999999  99999999999999999999984

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0

Probab=98.27  E-value=4e-08  Score=87.54  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI  114 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
                      |.-..|++..+++|++++++||   |.++|.||.+|  |+|||+|.|+|++.|-++|+|+|.
T Consensus        44 K~~~lt~e~a~~fY~~h~~kpf---f~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~  102 (156)
T 3js9_A           44 KFEHPTMDVVAQHYCEHKDKPF---FKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPV  102 (156)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGG
T ss_pred             EEecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCcc
Confidence            4556889999999999999999   99999999999  999999999999999999999943

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*

Probab=98.25  E-value=5.5e-08  Score=86.76  Aligned_cols=56  Identities=13%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...++|.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        36 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp   93 (157)
T 3q8u_A           36 KLMQVPMELAETHYGEHQGKPF---YNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNP   93 (157)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHHCCCcc---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCCh
Confidence            4556889999999999999999   99999999999  99999999999999999999984

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}

Probab=98.25  E-value=6e-08  Score=85.57  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-|+|+|+|
T Consensus        36 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p   93 (148)
T 2vu5_A           36 KLMQVTPEIAGQHYAEHEEKPF---FGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRP   93 (148)
T ss_dssp             EEECCCHHHHHHTGGGTTTCTH---HHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCc
Confidence            4456788899999999999999   99999999999  99999999999999999999984

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*

Probab=98.23  E-value=6.4e-08  Score=85.69  Aligned_cols=56  Identities=27%  Similarity=0.355  Sum_probs=51.5

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|++...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-|+|+|+|
T Consensus        38 k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p   95 (151)
T 3bbb_A           38 KFLRASEEHLKQHYIDLKDRPF---FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNP   95 (151)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHhcCCCc---hHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence            4445778888999999999999   99999999999  99999999999999999999983

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*

Probab=98.22  E-value=6.6e-08  Score=84.25  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-.+|.+...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        36 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p   93 (137)
T 1wkj_A           36 KLMQISQELAERHYAEHREKPF---FPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHP   93 (137)
T ss_dssp             EEECCCHHHHHHHTGGGSSSSS---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCC
Confidence            5556788899999999999999   99999999999  99999999999999999999983

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1

Probab=98.21  E-value=6.5e-08  Score=84.17  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI  114 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
                      |.-.+|.+...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-++|+++|.
T Consensus        37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~   95 (136)
T 1k44_A           37 QLRTVSAELASQHYAEHEGKPF---FGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPV   95 (136)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTT
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCcc
Confidence            4456788899999999999999   99999999999  999999999999999999999943

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A

Probab=98.20  E-value=6.5e-08  Score=85.01  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p   94 (144)
T 1nhk_R           37 RLQHLSQAQAEGFYAVHKARPF---FKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNP   94 (144)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCC
Confidence            4456788899999999999999   99999999999  99999999999999999999994

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}

Probab=98.20  E-value=6.6e-08  Score=84.75  Aligned_cols=56  Identities=21%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-.+|.+...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p   94 (142)
T 2hur_A           37 KMLHLTVEQARGFYAEHDGKPF---FDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNP   94 (142)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHhcCCCc---hHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCc
Confidence            4556888899999999999999   99999999999  99999999999999999999984

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1

Probab=98.20  E-value=8e-08  Score=84.96  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p   94 (150)
T 1pku_A           37 KFMNVERSFAQQHYADLSDKPF---FPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRP   94 (150)
T ss_dssp             EEECCCHHHHHHHSGGGTTSTT---HHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHhcCCCc---cHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCc
Confidence            4556788899999999999999   99999999999  99999999999999999999994

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*

Probab=98.19  E-value=7.3e-08  Score=85.49  Aligned_cols=56  Identities=14%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        40 k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p   97 (153)
T 1s57_A           40 KMFQCPKELAEEHYKDLSAKSF---FPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDP   97 (153)
T ss_dssp             EEECCCHHHHHHHTGGGTTSSS---HHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred             hhCCCCHHHHHHHHHHhcCCCc---chhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCc
Confidence            4556788899999999999999   99999999999  99999999999999999999983

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1

Probab=98.19  E-value=9.1e-08  Score=84.52  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        36 k~~~ls~e~a~~fY~~~~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p   93 (149)
T 1u8w_A           36 KLISVERSFAEKHYEDLSSKSF---FSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNP   93 (149)
T ss_dssp             EEECCCHHHHHHHTCTTSSSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---chhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCc
Confidence            4556788899999999999999   99999999999  99999999999999999999994

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1

Probab=98.18  E-value=8.5e-08  Score=85.52  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...++|.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        44 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p  101 (157)
T 1xiq_A           44 KMLNPTEEILKEHYKELSDQPF---FKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNP  101 (157)
T ss_dssp             EEECCCHHHHHHHTGGGSSSSS---CTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCC
Confidence            4556788899999999999999   99999999999  99999999999999999999994

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A

Probab=98.17  E-value=1.1e-07  Score=85.28  Aligned_cols=57  Identities=12%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI  114 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
                      |.-..|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|.
T Consensus        43 k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~  101 (164)
T 2az3_A           43 KFMRIDEELAHEHYAEHEDKPF---FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQ  101 (164)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred             EEecCCHHHHHHHHHHHcCCcc---hHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCcc
Confidence            4556888999999999999999   99999999999  999999999999999999999943

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1

Probab=98.16  E-value=1.1e-07  Score=85.31  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...++|.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        59 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p  116 (162)
T 1ehw_A           59 KMLQAPESVLAEHYQDLRRKPF---YPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDS  116 (162)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHHcCCcc---hHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCC
Confidence            5556888999999999999999   99999999999  99999999999999999999994

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1

Probab=98.16  E-value=1.2e-07  Score=85.45  Aligned_cols=57  Identities=25%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..+.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        55 ~k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p  113 (169)
T 1zs6_A           55 LKLVQASEELLREHYAELRERPF---YGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNP  113 (169)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             EEEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCc
Confidence            35557888999999999999999   99999999999  99999999999999999999994

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1e-07  Score=85.33  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI  114 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
                      .|.-..|.+...++|.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|.
T Consensus        47 ~K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~  106 (161)
T 3b54_A           47 IKLVKADDKLLEQHYAEHVGKPF---FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPL  106 (161)
T ss_dssp             EEEECCCHHHHHHHCC----------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred             EEEecCCHHHHHHHHHHHcCCcc---hHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcc
Confidence            35556888999999999999999   99999999999  999999999999999999999943

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A

Probab=98.12  E-value=6.5e-08  Score=84.81  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-.+|.+...+||.+.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+++|
T Consensus        38 k~~~ls~e~a~~~Y~~~~~kpf---f~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p   95 (142)
T 3ztp_A           38 KMFRFTPEKAGEFYYVHRERPF---FQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDS   95 (142)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSH
T ss_pred             eeccCCHHHHHHHHHHhcCCch---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCH
Confidence            5557889999999999999999   99999999999  99999999999999999999983

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*

Probab=98.12  E-value=1.2e-07  Score=84.77  Aligned_cols=56  Identities=14%  Similarity=0.085  Sum_probs=52.2

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.+.+++||   |.+++.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        42 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p   99 (160)
T 2dxe_A           42 KMIWIDRELAEKHYEEHREKPF---FKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDP   99 (160)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCC
Confidence            4556788899999999999999   99999999999  99999999999999999999984

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1

Probab=98.12  E-value=1.6e-07  Score=85.53  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             eecCcccccccCC-ccccccCccccccCCCCChh---HHHHhhhhhhCCC-ccccCCCCccccCCccccccCCchhhhhh
Q psy4316           6 RFDNELDYFSSGV-GTESVNGKTENRIKDDDNED---EEEKQNYMERGPH-SFSKTGAWSADNFDGDVADLRHSEFRSWF   80 (377)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (377)
                      .+.+++++|-.+. .+.+...+|---||-|--..   .+--+...+.|-. .-.|.-.+|.+...+||++.+++||   |
T Consensus        13 ~~~~~~~~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpf---f   89 (182)
T 1w7w_A           13 DYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPF---F   89 (182)
T ss_dssp             -----------------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTT---H
T ss_pred             ccchhhhhhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcc---h
Confidence            3557888875443 23333455666677654322   1222222222221 1235557899999999999999999   9


Q ss_pred             hhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          81 YRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .++|.+|.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        90 ~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p  124 (182)
T 1w7w_A           90 NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDP  124 (182)
T ss_dssp             HHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             HHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCC
Confidence            9999999999  99999999999999999999994

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*

Probab=98.01  E-value=2.2e-07  Score=85.21  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=52.3

Q ss_pred             cCCCCccccCCcccc-----ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVA-----DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|.+...+||.     +.+++||   |.++|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        61 K~~~ls~e~a~~fY~~~~~~~h~~kpf---f~~Lv~~mtSGPvvamvleG~naV~~~R~l~GpTdP  123 (190)
T 4dz6_A           61 KMLIVDESLAKKHYLYDDIVFRHSEAV---WNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEP  123 (190)
T ss_dssp             EEEECCHHHHHHHSCHHHHHHHTCHHH---HHHHHHHHTTSEEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred             EEecCCHHHHHHHhcccccHHhcCccH---HHHHHHHhcCCCEEEEEEecCCHHHHHHHHcCCCCh
Confidence            445688999999999     9999999   99999999999  99999999999999999999984

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1

Probab=97.48  E-value=3.9e-06  Score=77.19  Aligned_cols=41  Identities=15%  Similarity=0.123  Sum_probs=38.8

Q ss_pred             ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          70 DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      +.+.+||   |..+|.||.+|  |+|||+|.|.|++.|-++|+|+|
T Consensus        98 ~~~gk~f---f~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP  140 (195)
T 1xqi_A           98 VEVGRII---KRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSP  140 (195)
T ss_dssp             HHHHHHH---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCG
T ss_pred             hhcCCcc---hHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCC
Confidence            7888999   99999999999  99999999999999999999993

>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A

Probab=96.77  E-value=0.001  Score=54.74  Aligned_cols=39  Identities=13%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             hHhhhhhhcchhHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q psy4316         321 AHKIYLREFVYPTLQKG-LAELVRMKPAHSYEWFVNWLLE  359 (377)
Q Consensus       321 ~~r~YL~~~v~P~L~~g-L~el~k~rP~dPv~~La~~Ll~  359 (377)
                      ..+.||.+.=++.|+++ +.+||..||+||+.||++|+-+
T Consensus        39 ~ce~YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF~k   78 (95)
T 4f9k_A           39 GCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEK   78 (95)
T ss_dssp             TTHHHHHHTCTTTTTHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            48899999666666665 4678999999999999999864

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=96.34  E-value=0.00019  Score=71.34  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=66.9

Q ss_pred             ccccccCCCCChh--HHHHhhhhhhCCCcc--ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCC
Q psy4316          26 KTENRIKDDDNED--EEEKQNYMERGPHSF--SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLN   99 (377)
Q Consensus        26 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   99 (377)
                      +|---||-|.-..  -.+--.-+|+.-...  .|.-..+.+...+||++.+        ..++.||.+|  |+|||+|.|
T Consensus       237 rTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~--------~~Lv~~mtsGPvva~vleG~~  308 (352)
T 3bh7_B          237 SCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA--------PDFLPLLNKGPVIALEFNGDG  308 (352)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG--------GGTGGGGGGSCEEEEEEESTT
T ss_pred             ceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH--------HHHHHHhccCCEEEEEEECcC
Confidence            3444567666443  222222333322221  3555678899999999987        6799999999  999999999


Q ss_pred             ceeeecccCCCCCCcccccCCCCCceEecCCCCcc
Q psy4316         100 PIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNI  134 (377)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~~~~  134 (377)
                      .|+..|-|+|.++++        |.|+..|+...+
T Consensus       309 av~~~R~l~g~t~pg--------N~vHgSds~esA  335 (352)
T 3bh7_B          309 AVEVCQLIVNEIFNG--------TKMFVSESKETA  335 (352)
T ss_dssp             HHHHHHHHHHHHCTT--------SCEEECSCHHHH
T ss_pred             HHHHHHHHhcCCCCC--------ceEEecCCHHHH
Confidence            999999999988862        999999986443

>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A

Probab=94.15  E-value=0.058  Score=37.17  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316         332 PTLQKGLAELVRMKPAHSYEWFVNWLLE  359 (377)
Q Consensus       332 P~L~~gL~el~k~rP~dPv~~La~~Ll~  359 (377)
                      ..|-.=..++++++|.|++.|.|+|+-+
T Consensus         9 ~lL~~~~~~vl~~qP~di~~f~a~yF~~   36 (41)
T 2izx_A            9 ELLQGYTVEVLRQQPPDLVEFAVEYFTR   36 (41)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3444445688999999999999999864

>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}

Probab=93.79  E-value=0.069  Score=38.62  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=25.0

Q ss_pred             hcchhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316         328 EFVYPTLQKGLAELVRMKPAHSYEWFVNWLLE  359 (377)
Q Consensus       328 ~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~  359 (377)
                      ..+...|-.=..++++++|.|++.|.++|+-+
T Consensus        13 ~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~   44 (50)
T 2kyg_A           13 PGLTELLQGYTVEVLRQQPPDLVEFAVEYFTR   44 (50)
T ss_dssp             TTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            34445555556789999999999999999864

>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A

Probab=93.61  E-value=0.061  Score=39.70  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=24.6

Q ss_pred             cchhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316         329 FVYPTLQKGLAELVRMKPAHSYEWFVNWLLE  359 (377)
Q Consensus       329 ~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~  359 (377)
                      .+...|-.=..++++.+|.|++.|.|+|+-+
T Consensus         9 ~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~   39 (54)
T 2izy_A            9 GLTELLQGYTVEVLRQQPPDLVDFAVEYFTR   39 (54)
T ss_dssp             THHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4444555556789999999999999999864

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=85.23  E-value=0.0046  Score=60.16  Aligned_cols=46  Identities=11%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             hhhHhhhhhh-cchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCCCC
Q psy4316         319 FLAHKIYLRE-FVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFS  364 (377)
Q Consensus       319 ~~~~r~YL~~-~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP~~  364 (377)
                      -...+.||.+ .|.+.|-.-..+||++||+||++|+++||-+....+
T Consensus        15 ~~~~~~y~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   61 (381)
T 4din_B           15 LKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEE   61 (381)
T ss_dssp             CCCSCCCSSSSCCSCCCCCCCSCSSCSSSSCSSTTSSSCSCSSCCC-
T ss_pred             HHHHHHHhhhhChHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhhc
Confidence            4568899999 555555555678999999999999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d1zs6a1	152	d.58.6.1 (A:18-169) Nucleoside diphosphate kinase,	5e-32
d3bbba1	150	d.58.6.1 (A:2-151) Nucleoside diphosphate kinase,	2e-31
d1k44a_	135	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	4e-31
d1ehwa_	143	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-30
d1nhkl_	143	d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {	2e-30
d1xqia1	182	d.58.6.1 (A:14-195) Nucleoside diphosphate kinase,	7e-30
d1s57a_	153	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-29
d1wkja1	137	d.58.6.1 (A:1-137) Nucleoside diphosphate kinase,	2e-29
d1w7wa_	151	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-28
d2az3a1	152	d.58.6.1 (A:4-155) Nucleoside diphosphate kinase,	2e-28
d1hlwa_	150	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	3e-28
d1xiqa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	3e-28
d1u8wa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-27
d1nb2a_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	6e-27
d2dyaa1	153	d.58.6.1 (A:6-158) Nucleoside diphosphate kinase,	8e-25
d2b8qa1	128	d.58.6.1 (A:2-129) Nucleoside diphosphate kinase,	9e-25

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

 Score =  115 bits (290), Expect = 5e-32
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
           +E T   VKP   +   V +I +  + KGF +V  K  + + E   E +   E R+    
Sbjct: 4   HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHY--AELRERPFY 61

Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
            RLV YM SGPV  MV      +R    L+G  +P  A    P ++R  + +    N I+
Sbjct: 62  GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIH 118

Query: 280 GSRNEEEAARDIRFFFKDI-IIEPSNAMESDI 310
           GS + E A R+I  +F+   ++   ++    +
Sbjct: 119 GSDSVESARREIALWFRADELLCWEDSAGHWL 150

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP   +   V +I +  ++KGF +V  K  + + E   + +I  + +D    P
Sbjct: 4   ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFP 61

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV YM SGPV  MV      ++    ++G  +P  +K   P ++R  + +    N I+G
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHG 118

Query: 281 SRNEEEAARDIRFFFKDI-IIEPSNAMES 308
           S + + A ++I  +FK   +++  +    
Sbjct: 119 SDSVKSAEKEISLWFKPEELVDYKSCAHD 147

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  113 bits (283), Expect = 4e-31
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL L+KP       + +I   I+ KG TI   +    + E A++ +   E        
Sbjct: 2   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHY--AEHEGKPFFG 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ ++ SGPV   ++   +AI     L G  DP +A    P ++R  + +    N ++G
Sbjct: 60  SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAA--PGTIRGDFALETQFNLVHG 117

Query: 281 SRNEEEAARDIRFFF 295
           S + E A R+I  +F
Sbjct: 118 SDSAESAQREIALWF 132

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

 Score =  112 bits (280), Expect = 1e-30
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL  VKP   +   V D+ Q  + +GFT+V  K  +      AE +  ++ R     P
Sbjct: 6   ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHY--QDLRRKPFYP 63

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ YM SGPV  MV      +R    ++G  D  +A    P ++R  + V+   N I+ 
Sbjct: 64  ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHA 120

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I+ +F+ 
Sbjct: 121 SDSVEGAQREIQLWFQS 137

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL+++KP       +  I    +EKG   V  +    +  QA  F+   + R      
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARP--FFK 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV +M+SGPV +MVL  + A+     +MG  +P +A      ++R  +  +   N ++G
Sbjct: 61  DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHG 117

Query: 281 SRNEEEAARDIRFFFKDIIIEP 302
           S + E A  +I +FF++  I  
Sbjct: 118 SDSLENAKIEIAYFFRETEIHS 139

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  111 bits (278), Expect = 7e-30
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 46/178 (25%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV- 219
           E TL ++KP A     V++I    ++ G  IV  K  K +PE+   F+ + EE       
Sbjct: 3   EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62

Query: 220 ------------------------------PRLVCYMVSGPVRVMVLAKQKAIRRWLHLM 249
                                           LV YM SGP  VMVL   +A+     L+
Sbjct: 63  KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122

Query: 250 GPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKD 297
           GP  P  A    P ++R  Y ++           + N ++ S +  EA R+IRF+F++
Sbjct: 123 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 177

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

 Score =  109 bits (274), Expect = 1e-29
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   V +I    ++KGF ++  K F+   E A E +  ++       P
Sbjct: 6   EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHY--KDLSAKSFFP 63

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ Y+ SGPV  M       +     L+G  DP +A+   P ++R    V    N ++G
Sbjct: 64  NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHG 120

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E   R+I  +FK+
Sbjct: 121 SDSPENGKREIGLWFKE 137

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (271), Expect = 2e-29
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP   R   V +I    + KGF I   K  + + E A   +   E R+    P
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHY--AEHREKPFFP 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MVL     +     +MG   P  A    P ++R  +      N I+G
Sbjct: 60  GLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S   E+A R+I  FF+ 
Sbjct: 117 SATLEDAQREIALFFRP 133

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   +KP   +   + +I    + KGF +V  K    T + A + +   +ER      
Sbjct: 4   ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF--N 61

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L  ++ SGPV  MV   +  I     L+G  DP K+    P ++R    V    N I+G
Sbjct: 62  GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHG 118

Query: 281 SRNEEEAARDIRFFFKD 297
           S   E A  +I+ +FK 
Sbjct: 119 SDGPETAKDEIKLWFKP 135

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   + DI   ++ KG  +V  K  +   E A E +   E  D     
Sbjct: 3   ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHY--AEHEDKPFFD 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV ++ SGPV  MV     A R+   LMG  D   A    P ++R  YG +   N I+G
Sbjct: 61  GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHG 117

Query: 281 SRNEEEAA--RDIRFFFKD 297
           S +E+E A  R+I  FF D
Sbjct: 118 SDHEDEGANEREIALFFDD 136

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T   VKP       V +I    ++KGF +V  K    T + A   +   +ER      
Sbjct: 4   ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
               ++ SGPV  MV   +  +     ++G  +P  +    P S+R  +GV+   N I G
Sbjct: 64  V--SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIAG 118

Query: 281 SRNEEEAARDIRFFFKD 297
           S + E A R+I  +FK 
Sbjct: 119 SDSVESANREIALWFKP 135

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E +  ++KP   +   V  I +  ++KG+ ++  K    T E   E +  +E  D     
Sbjct: 2   EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHY--KELSDQPFFK 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y+  GPV  MV      +++   L+G  +P  +      ++R  + +    N I+G
Sbjct: 60  NLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S +   A ++I  +FK 
Sbjct: 117 SDSVASANKEINIWFKA 133

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (260), Expect = 1e-27
 Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  ++KP   +   + ++    ++KGFT+   K        A + +     +      
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFF--S 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV Y+VSGPV  M+   +  +     ++G  +P  ++   P ++R  + ++   N I+G
Sbjct: 60  GLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHG 116

Query: 281 SRNEEEAARDIRFFFKDIIIEPSNAMES 308
           S + E A ++I  +F D  +   +++  
Sbjct: 117 SDSVESARKEIALWFPDGPVNWQSSVHP 144

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

 Score =  102 bits (255), Expect = 6e-27
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E T  +VKP   +   V ++ +  + KG  +   K    + + AA  +            
Sbjct: 2   ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFF--G 59

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            LV    SGPV  MV     A      ++G  +P  A    P ++R  +GV+   NAI+G
Sbjct: 60  GLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHG 116

Query: 281 SRNEEEAARDIRFFFKD 297
           S +   AA++I  FF  
Sbjct: 117 SDSAGSAAKEIGAFFGG 133

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 96.6 bits (240), Expect = 8e-25
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
           E TL ++KP A     + +I    ++KG  IV  K      E A + +   E R+     
Sbjct: 3   ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHY--EEHREKPFFK 60

Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
            L+ Y+   PV VMVL  + A+     + G  DP  A              + I N I+ 
Sbjct: 61  ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHA 120

Query: 281 SRNEEEAARDIRFFFKD 297
           S ++E A R+I  FFK 
Sbjct: 121 SDSKESAEREISLFFKP 137

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

 Score = 95.9 bits (238), Expect = 9e-25
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 165 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
           TL L+KP AF    V +I   I++K F IV  K +   P    E    +E  +       
Sbjct: 3   TLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHY-KEHSEQSYFNDN 61

Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
             +MVSGP+  +V     AI +   L G         + P ++R     +   N I+ S 
Sbjct: 62  CDFMVSGPIISIVYEGTDAISKIRRLQGN-------ILTPGTIRGDLANDIRENLIHASD 114

Query: 283 NEEEAARDIRFFF 295
           +E+ A  +I  +F
Sbjct: 115 SEDSAVDEISIWF 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d1nhkl_	143	Nucleoside diphosphate kinase, NDK {Myxococcus xan	100.0
d1ehwa_	143	Nucleoside diphosphate kinase, NDK {Human (Homo sa	100.0
d1u8wa_	149	Nucleoside diphosphate kinase, NDK {Thale cress (A	100.0
d1wkja1	137	Nucleoside diphosphate kinase, NDK {Thermus thermo	100.0
d1k44a_	135	Nucleoside diphosphate kinase, NDK {Mycobacterium	100.0
d1xiqa_	149	Nucleoside diphosphate kinase, NDK {Plasmodium fal	100.0
d3bbba1	150	Nucleoside diphosphate kinase, NDK {Human (Homo sa	100.0
d1s57a_	153	Nucleoside diphosphate kinase, NDK {Thale cress (A	100.0
d1zs6a1	152	Nucleoside diphosphate kinase, NDK {Human(Homo sap	100.0
d1nb2a_	149	Nucleoside diphosphate kinase, NDK {Bacillus halod	100.0
d1hlwa_	150	Nucleoside diphosphate kinase, NDK {Dictyostelium	100.0
d1w7wa_	151	Nucleoside diphosphate kinase, NDK {Pea (Pisum sat	100.0
d2dyaa1	153	Nucleoside diphosphate kinase, NDK {Archaeon Pyroc	100.0
d2az3a1	152	Nucleoside diphosphate kinase, NDK {Archaeon Halob	100.0
d1xqia1	182	Nucleoside diphosphate kinase, NDK {Archaeon Pyrob	100.0
d2b8qa1	128	Nucleoside diphosphate kinase, NDK {Mimivirus [Tax	100.0
d1s57a_	153	Nucleoside diphosphate kinase, NDK {Thale cress (A	97.98
d1nb2a_	149	Nucleoside diphosphate kinase, NDK {Bacillus halod	97.82
d1wkja1	137	Nucleoside diphosphate kinase, NDK {Thermus thermo	97.8
d2az3a1	152	Nucleoside diphosphate kinase, NDK {Archaeon Halob	97.73
d1u8wa_	149	Nucleoside diphosphate kinase, NDK {Thale cress (A	97.73
d1w7wa_	151	Nucleoside diphosphate kinase, NDK {Pea (Pisum sat	97.71
d3bbba1	150	Nucleoside diphosphate kinase, NDK {Human (Homo sa	97.7
d1ehwa_	143	Nucleoside diphosphate kinase, NDK {Human (Homo sa	97.69
d1hlwa_	150	Nucleoside diphosphate kinase, NDK {Dictyostelium	97.66
d1nhkl_	143	Nucleoside diphosphate kinase, NDK {Myxococcus xan	97.65
d1zs6a1	152	Nucleoside diphosphate kinase, NDK {Human(Homo sap	97.62
d1k44a_	135	Nucleoside diphosphate kinase, NDK {Mycobacterium	97.56
d1xiqa_	149	Nucleoside diphosphate kinase, NDK {Plasmodium fal	97.55
d1xqia1	182	Nucleoside diphosphate kinase, NDK {Archaeon Pyrob	97.39
d2b8qa1	128	Nucleoside diphosphate kinase, NDK {Mimivirus [Tax	97.39
d2dyaa1	153	Nucleoside diphosphate kinase, NDK {Archaeon Pyroc	97.22
d2ezwa1	50	cAMP-dependent protein kinase type I-alpha regulat	95.19

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

Probab=100.00  E-value=2e-45  Score=321.51  Aligned_cols=139  Identities=27%  Similarity=0.432  Sum_probs=135.0

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         2 ~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~~~ff~~lv~~mtSgpvva~vl~g~   79 (143)
T d1nhkl_           2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYA--VHKARPFFKDLVQFMISGPVVLMVLEGE   79 (143)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             chheEEEEChhhhccCCHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHH--hhcccchHHHHHhccCCCCEEEEEEEec
Confidence            699999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |||..||++||||||.+|   .|+|||++||.+.++|+||||||+++|.+||.||||+..+.++|-
T Consensus        80 ~av~~~R~l~Gptdp~~a---~p~tiR~~fg~~~~~N~vH~Sds~e~A~rEi~~fF~~~ei~~~~~  142 (143)
T d1nhkl_          80 NAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY  142 (143)
T ss_dssp             THHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred             chHHHHHHhhcCCChhhc---cccchHhhhccccCcCCeECCCCHHHHHHHHHHcCCHHHccccCC
Confidence            999999999999999988   699999999999999999999999999999999999998888773

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=320.41  Aligned_cols=135  Identities=31%  Similarity=0.454  Sum_probs=131.0

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      ..|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|
T Consensus         4 ~~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~--~~~~k~f~~~lv~~m~sGp~~a~~l~g   81 (143)
T d1ehwa_           4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQ--DLRRKPFYPALIRYMSSGPVVAMVWEG   81 (143)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             ccceEEEEECchhhhcCCHHHHHHHHHHcCCEEeeeeeeecCHHHHHHHHH--HHhcchhhhhhhheecCCCEEEEecch
Confidence            4699999999999987  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      +|||..||++||||||.+|   +|+|||++||++.++|+||||||+++|.+||.||||+..+
T Consensus        82 ~naV~~~R~l~Gpt~p~~a---~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~ei  140 (143)
T d1ehwa_          82 YNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSEL  140 (143)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred             hhHHHHHHHHhcCCCcccC---CCCCcHhhhhCcccCCCeECCCCHHHHHHHHHHhCChhhc
Confidence            9999999999999999999   7999999999999999999999999999999999998654

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.4e-45  Score=321.53  Aligned_cols=135  Identities=24%  Similarity=0.405  Sum_probs=131.1

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|.
T Consensus         1 ~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~--~~~gk~ff~~lv~~m~sGPv~a~~l~g~   78 (149)
T d1u8wa_           1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYE--DLSSKSFFSGLVDYIVSGPVVAMIWEGK   78 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTC--TTSSSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CceeEEEECchhhhccCHHHHHHHHHHcCCEEeEeeeeeCCHHHHHHHHH--HHccchhhhhhhhhccCCCeeeeecccc
Confidence            589999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE  301 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e  301 (377)
                      |||+.||+++||+||..|   .|+|||++||.+.++|+||||||+++|.+||.||||+..++
T Consensus        79 ~aV~~~R~l~Gptdp~~A---~p~tIR~~fg~~~~~N~vH~Sds~e~A~rEi~~fFp~~~i~  137 (149)
T d1u8wa_          79 NVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVN  137 (149)
T ss_dssp             THHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCCC
T ss_pred             hHHHHHHHHhccCCcccC---CCCchhccccccccccceECCCCHHHHHHHHHHcCCccccC
Confidence            999999999999999999   69999999999999999999999999999999999987764

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.9e-45  Score=315.71  Aligned_cols=133  Identities=32%  Similarity=0.509  Sum_probs=129.0

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         1 ~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~f~~~lv~~m~SGp~~~l~l~g~   78 (137)
T d1wkja1           1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYA--EHREKPFFPGLVRFITSGPVVAMVLEGP   78 (137)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGSSSSSHHHHHHHHTSSCEEEEEEEST
T ss_pred             CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHhhhH--HHhcccccccceeeeccCCEEEEEEEec
Confidence            589999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      |||.+||+++||+||..|   .|+|||++||++.++|+||||||+++|.+|+.|||++..
T Consensus        79 nav~~~r~l~Gpt~p~~a---~p~siR~~yg~~~~~N~vH~Sds~e~A~rEi~~fF~~~e  135 (137)
T d1wkja1          79 GVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEE  135 (137)
T ss_dssp             THHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGG
T ss_pred             chhhhhhhhcccCCcCcC---CCCChHHHhccccCCCCeeCCCCHHHHHHHHHhcCChhh
Confidence            999999999999999998   699999999999999999999999999999999998643

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-44  Score=313.71  Aligned_cols=131  Identities=28%  Similarity=0.465  Sum_probs=127.6

Q ss_pred             ceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316         163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK  240 (377)
Q Consensus       163 ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N  240 (377)
                      |+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|+|
T Consensus         2 E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~~~ff~~lv~~m~SGp~~~l~l~g~n   79 (135)
T d1k44a_           2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYA--EHEGKPFFGSLLEFITSGPVVAAIVEGTR   79 (135)
T ss_dssp             EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHTTTSCEEEEEEEETT
T ss_pred             ceEEEEECcchhccCCHHHHHHHHHHcCCEEEEEEeccCCHHHHHHHHH--HHhccccccccceeecccCceeecccCcc
Confidence            89999999999987  799999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316         241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD  297 (377)
Q Consensus       241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~  297 (377)
                      ||.+||++|||+||.+|  .+|+|||++||.+.++|+||||||.++|++|+.||||.
T Consensus        80 av~~~r~l~Gptdp~~a--~~p~siR~~yg~~~~~N~vHgSds~~~A~rEi~~fFp~  134 (135)
T d1k44a_          80 AIAAVRQLAGGTDPVQA--AAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG  134 (135)
T ss_dssp             HHHHHHHHHCCSSTTTT--SCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhCCCCcccc--cCCCCcHHHhcCCccccCeECCCCHHHHHHHHHHcCCC
Confidence            99999999999999776  47999999999999999999999999999999999996

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=1.7e-44  Score=317.47  Aligned_cols=138  Identities=24%  Similarity=0.383  Sum_probs=132.2

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      +|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~ff~~lv~~mtsGp~v~~~l~~~   78 (149)
T d1xiqa_           1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYK--ELSDQPFFKNLVAYISKGPVVAMVWEGV   78 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGSSSSSCTTHHHHHTTSCEEEEEEEST
T ss_pred             CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHH--HHccccccchhhhhcccCCEEEEEeccc
Confidence            589999999999986  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      |||..||++||||||.+|   +|+|||++||.+.++|+||||||+++|.+||.||||+..+....
T Consensus        79 nav~~~R~l~Gptdp~~a---~~~siR~~fg~~~~~N~vHgSds~e~A~rEi~~fF~~~ei~~~~  140 (149)
T d1xiqa_          79 DMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWK  140 (149)
T ss_dssp             THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCC
T ss_pred             hhhHHHHHhccCCCcccC---CCCCccccceecccccceECCCCHHHHHHHHHHcCChhhcccCc
Confidence            999999999999999999   69999999999999999999999999999999999986655543

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=317.85  Aligned_cols=138  Identities=27%  Similarity=0.434  Sum_probs=131.9

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+||||||+++  +|+||++|+++||+|+++||++||+++|++||.  +|++++||+.||+||+||||+||+|.|
T Consensus         2 ~~e~Tl~lIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~ff~~lv~~m~sgPv~al~l~g   79 (150)
T d3bbba1           2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFPGLVKYMNSGPVVAMVWEG   79 (150)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             ChheeEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHH--HHhcchhhhhhheeecCCCEeeeeecc
Confidence            4799999999999987  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS  303 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi  303 (377)
                      +|||..||+++|||||..|   +|+|||++||++.++|+||||||+++|++||.+|||+..+-..
T Consensus        80 ~naV~~~R~l~Gpt~p~~a---~p~tiR~~fg~~~~~N~vH~Sds~e~A~rEi~~fF~~~ei~~~  141 (150)
T d3bbba1          80 LNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDY  141 (150)
T ss_dssp             TTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCC
T ss_pred             cChHHHHHHHhCCCCcccc---CCcchHHhhcccccCcCEEcCCCHHHHHHHHHHcCChHhcccC
Confidence            9999999999999999988   7999999999999999999999999999999999997554433

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

Probab=100.00  E-value=2.5e-44  Score=317.95  Aligned_cols=141  Identities=28%  Similarity=0.413  Sum_probs=135.5

Q ss_pred             cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316         160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA  237 (377)
Q Consensus       160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~  237 (377)
                      ..+|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.
T Consensus         3 ~~~e~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~f~~~lv~~mtSGPv~amvl~   80 (153)
T d1s57a_           3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYK--DLSAKSFFPNLIEYITSGPVVCMAWE   80 (153)
T ss_dssp             CCCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSSSHHHHHHHHTSSCEEEEEEE
T ss_pred             chhheeEEEEChhhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHH--HHhcchhHHHHHhhccCCCeeeeeec
Confidence            35799999999999987  799999999999999999999999999999999  99999999999999999999999999


Q ss_pred             eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |+|||..||+++||+||.+|   .|+|||++||.+.++|+||||||+++|.||+.||||+..+.+..+
T Consensus        81 g~nav~~~r~l~Gpt~p~~A---~p~tiR~~yg~~~~~N~vHgSds~esA~rEi~~fFp~~ei~~~~~  145 (153)
T d1s57a_          81 GVGVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDS  145 (153)
T ss_dssp             ETTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCC
T ss_pred             ccchhhhHHHhccCCCcccc---CCCCchhhheeeccCceeECCCCHHHHHHHHHHccChhhcccCcc
Confidence            99999999999999999999   699999999999999999999999999999999999988876654

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=318.71  Aligned_cols=139  Identities=31%  Similarity=0.415  Sum_probs=132.9

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      ..|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|.|
T Consensus         3 ~~ErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~f~~~Lv~~m~sGpvva~~l~g   80 (152)
T d1zs6a1           3 AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYA--ELRERPFYGRLVKYMASGPVVAMVWQG   80 (152)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             CceeEEEEECcchhhcCCHHHHHHHHHHcCCEEEEEeeeeCCHHHHHHHHH--HhhccccHHHHHhhcCCCCEEEEeccc
Confidence            4799999999999988  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      +|||+.||++||||||..|   .|+|||++||.+.++|+||||||+++|.+|+.||||+..+-...
T Consensus        81 ~nav~~~R~l~Gptdp~~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~rEi~~fF~~~e~~~~~  143 (152)
T d1zs6a1          81 LDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWE  143 (152)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCC
T ss_pred             hhHHHHHHHHcCCCChhcc---CchhhhhhhcccccCCceECCCCHHHHHHHHHHhCChhhccccc
Confidence            9999999999999999999   69999999999999999999999999999999999986554443

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

Probab=100.00  E-value=9.5e-45  Score=319.37  Aligned_cols=139  Identities=27%  Similarity=0.364  Sum_probs=133.8

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+||||||+++  +|+||++|+++||.|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         1 kErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~~~ff~~lv~~mtsgP~~a~vl~g~   78 (149)
T d1nb2a_           1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYA--ELGGGPFFGGLVGGATSGPVFAMVWEGL   78 (149)
T ss_dssp             CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTC--TTSSSTTHHHHHHHHTSSCCBEEEEEST
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEEeEecCHHHHHHHHH--HHccCceecchhhhcccCceEEEEeecc
Confidence            489999999999988  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |||..||++||||||.+|   .|+|||++||++.++|+||||||+++|++||.||||+..+.+..+
T Consensus        79 naV~~~R~l~Gptdp~~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~rEi~~fF~~~e~~~~~~  141 (149)
T d1nb2a_          79 NAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTP  141 (149)
T ss_dssp             THHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCC
T ss_pred             hhHHHHHHHhCCCChhhc---CcchhhhhheeeeccceeeCCCCHHHHHHHHHhcCChhhcccCcc
Confidence            999999999999999999   699999999999999999999999999999999999987766554

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.7e-44  Score=316.64  Aligned_cols=135  Identities=30%  Similarity=0.417  Sum_probs=130.1

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      ..|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|.|
T Consensus         2 ~~E~Tl~iIKPDav~~~l~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~f~~~lv~~m~sGp~vam~l~g   79 (150)
T d1hlwa_           2 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYA--EHKERPFFGGLVSFITSGPVVAMVFEG   79 (150)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             CcceEEEEECcchhhcCCHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--hccCCccccccccccccCCeeeEEeec
Confidence            3699999999999988  899999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII  300 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~  300 (377)
                      .|||.+||++||||||..+   .|+||||+||++.++|+||||||+++|++||.||||+..+
T Consensus        80 ~naV~~~R~l~Gptdp~~~---~p~tiR~~yg~~~~~N~vH~SDs~e~A~~Ei~~fF~~~ei  138 (150)
T d1hlwa_          80 KGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIAGSDSVESANREIALWFKPEEL  138 (150)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGS
T ss_pred             ccHHHHHHHhhcCCCcccc---CchhhhhhheecccceeeECCCCHHHHHHHHHHcCChHhc
Confidence            9999999999999999877   7999999999999999999999999999999999997544

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.9e-44  Score=316.87  Aligned_cols=139  Identities=27%  Similarity=0.366  Sum_probs=133.1

Q ss_pred             ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316         161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK  238 (377)
Q Consensus       161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G  238 (377)
                      .+|+||+||||||+++  +|+||++|+++||+|+++|+++||+++|++||.  +|++++||+.|++||+||||+||+|.|
T Consensus         2 ~~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~--~~~~k~ff~~lv~~mtsGpv~al~l~g   79 (151)
T d1w7wa_           2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYH--DLKERPFFNGLCDFLSSGPVIAMVWEG   79 (151)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred             CcceEEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEEEecCHHHHHHHHH--HHHccccccchhhhccCCCEeeEeecc
Confidence            3799999999999986  799999999999999999999999999999999  999999999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316         239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~  304 (377)
                      +|||..||++||||||.+|   .|+|||++||++.++|+||||||+++|.+|+.||||+..+....
T Consensus        80 ~naV~~~r~l~Gptdp~~a---~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~ei~~~~  142 (151)
T d1w7wa_          80 EGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFT  142 (151)
T ss_dssp             TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCC
T ss_pred             chhHHHHHHHhccCCcccc---CCCchhHhhccccCCceeeCCCCHHHHHHHHHHccChhhceecc
Confidence            9999999999999999999   79999999999999999999999999999999999987665544

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9.9e-44  Score=314.04  Aligned_cols=139  Identities=31%  Similarity=0.456  Sum_probs=132.1

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         2 ~ErTlaiIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~~~f~~~lv~~m~sGp~~alvl~~~   79 (153)
T d2dyaa1           2 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYE--EHREKPFFKALIDYITKTPVVVMVLEGR   79 (153)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             ceeEEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeeccCHHHHHHHHH--HHhcccchHHHHHHHhhcceeeeeeccc
Confidence            489999999999987  799999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccC---CCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV---NDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA  305 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~---d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~  305 (377)
                      |||+.||+|||||||..|   .|+|||++||.   +.++|+||||||+++|++||.|||++..+...++
T Consensus        80 nav~~~r~l~Gptdp~~A---~p~tiR~~fg~~~~d~~~N~vHgSds~e~A~rEi~~fF~~~ei~~~~~  145 (153)
T d2dyaa1          80 YAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPR  145 (153)
T ss_dssp             THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred             CHHHHHHHHhCCCChhHc---CCCCcchhhcccccccccCcccCCCCHHHHHHHHHHcCCchhhcCcCc
Confidence            999999999999999999   79999999996   4578999999999999999999999877666665

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=100.00  E-value=7e-44  Score=314.62  Aligned_cols=138  Identities=33%  Similarity=0.490  Sum_probs=131.7

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      .|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         2 ~ErTl~iIKPDav~~~~~geIi~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~~~~k~ff~~lv~~m~sGpvvalvl~g~   79 (152)
T d2az3a1           2 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYA--EHEDKPFFDGLVSFITSGPVFAMVWEGA   79 (152)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HccCCcccccceeccccCCEEEEEEecC
Confidence            589999999999988  899999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHH--HHHHHhccCCCcccccC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEA--ARDIRFFFKDIIIEPSN  304 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA--~rEi~fFFp~~~~epi~  304 (377)
                      |||..||++||||||..|   +|+|||++||.+.++|+||||||+++|  +|||.||||+..+....
T Consensus        80 ~av~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~SDs~e~A~~erEi~~fF~~~ei~~~~  143 (152)
T d2az3a1          80 DATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWD  143 (152)
T ss_dssp             THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCC
T ss_pred             CHHHHHHHHhCCCChhhc---CCCCccceeEEEecCceEECCCChhhhhhhhhhhhccChhhccccc
Confidence            999999999999999999   799999999999999999999999876  79999999987665544

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=5e-43  Score=317.34  Aligned_cols=133  Identities=34%  Similarity=0.571  Sum_probs=126.8

Q ss_pred             cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhccccccc-------------------------
Q psy4316         162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREER-------------------------  214 (377)
Q Consensus       162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~-------------------------  214 (377)
                      +|+||+||||||+++  +|+||++|+++||.|+++||++||+++|++||.  +|+                         
T Consensus         2 ~ErTl~iIKPDav~~~lvg~Ii~~ie~~Gf~Iva~k~~~lt~e~a~~fY~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1xqia1           2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYP--SSEEWLQSAGQKLLKAYQELGIDPRAKI   79 (182)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HHHHHhhhhhhhhhhhhhhhcccccccc
Confidence            689999999999986  799999999999999999999999999999998  775                         


Q ss_pred             --------CCCCcccccceeecCcEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCC----------ccc
Q psy4316         215 --------DPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMN  276 (377)
Q Consensus       215 --------gk~ff~~LV~~MtSGPvVaL~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~----------~rN  276 (377)
                              |++||+.|++|||||||+||+|.|.|||++||++||||||..|   .|+|||++||.|.          ++|
T Consensus        80 ~~~~~~~~gk~f~~~Lv~~mtSgPvva~vleg~~aV~~~R~l~GptdP~~A---~pgtIR~~fg~d~~~~~~~~~~~~rN  156 (182)
T d1xqia1          80 GTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFN  156 (182)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCC
T ss_pred             ccccccccCCcchHHHHHHHhcCceEEEEecccCHHHHHHHHhCCCCcccC---CCCccHHhhCcCcccccccccccccc
Confidence                    6899999999999999999999999999999999999999999   6999999999984          689


Q ss_pred             eEEcCCCHHHHHHHHHhccCCCc
Q psy4316         277 AIYGSRNEEEAARDIRFFFKDII  299 (377)
Q Consensus       277 aVHgSDs~esA~rEi~fFFp~~~  299 (377)
                      +||||||+++|++||.+||++..
T Consensus       157 ~vH~SDs~e~A~rEi~~fF~~~e  179 (182)
T d1xqia1         157 LVHASDSPSEAEREIRFWFREEE  179 (182)
T ss_dssp             SEEECSSHHHHHHHHHHHCCGGG
T ss_pred             ceECCCCHHHHHHHHHhcCChhh
Confidence            99999999999999999999753

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

Probab=100.00  E-value=2.1e-41  Score=290.56  Aligned_cols=125  Identities=28%  Similarity=0.402  Sum_probs=119.6

Q ss_pred             ceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeec-CHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316         163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKF-TPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ  239 (377)
Q Consensus       163 ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~L-s~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~  239 (377)
                      |+||+||||||+++  +|+||++|+++||.|+++||+++ ++++|++||.  +|++++||+.|++||+||||+||+|.|+
T Consensus         1 QrTl~iIKPdav~~~~~geIi~~i~~~Gf~Iv~~k~~~~~~~~~a~~~y~--~~~~k~f~~~lv~~m~sGpv~al~l~g~   78 (128)
T d2b8qa1           1 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYK--EHSEQSYFNDNCDFMVSGPIISIVYEGT   78 (128)
T ss_dssp             EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             CeEEEEECcchhhcCCHHHHHHHHHHCCCEEeehhhhhhhHHHHHHHhhh--hhcccchhcchhhcCCCCCEEEeeeecc
Confidence            68999999999986  79999999999999999999875 5678999999  9999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC
Q psy4316         240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK  296 (377)
Q Consensus       240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp  296 (377)
                      |||.+||+|+||++       .|+|||++||.+.++|+||||||+++|.+|++||||
T Consensus        79 naV~~~R~l~G~~~-------~p~siR~~fg~~~~~N~vH~Sds~~~A~~Ei~~fFP  128 (128)
T d2b8qa1          79 DAISKIRRLQGNIL-------TPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFP  128 (128)
T ss_dssp             THHHHHHHHHCCTT-------CTTSHHHHHCCCSSCCSEEECCSHHHHHHHHHHHCC
T ss_pred             chHHHHHHhccccC-------CCCChHHHhcCCccccCeECCCCHHHHHHHHHhcCC
Confidence            99999999999984       699999999999999999999999999999999998

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

Probab=97.98  E-value=1.5e-07  Score=81.28  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.+|++...+||.+.++.||   |..++.+|.+|  ++||++|.|.|++.|.++|+++|
T Consensus        39 ~k~~~lt~e~a~~~Y~~~~~k~f---~~~lv~~mtSGPv~amvl~g~nav~~~r~l~Gpt~p   97 (153)
T d1s57a_          39 LKMFQCPKELAEEHYKDLSAKSF---FPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDP   97 (153)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSSS---HHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred             EEeecCCHHHHHHHHHHHhcchh---HHHHHhhccCCCeeeeeecccchhhhHHHhccCCCc
Confidence            46677899999999999999999   99999999999  99999999999999999999883

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

Probab=97.82  E-value=7.7e-07  Score=76.49  Aligned_cols=57  Identities=25%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...+||.++++.||   |..++.+|.+|  ++||++|.|.|++.|-++|+++|
T Consensus        35 ~k~~~lt~e~a~~~Y~~~~~~~f---f~~lv~~mtsgP~~a~vl~g~naV~~~R~l~Gptdp   93 (149)
T d1nb2a_          35 AKLMVISKDGAAAHYAELGGGPF---FGGLVGGATSGPVFAMVWEGLNAAATARQILGATNP   93 (149)
T ss_dssp             EECCCCTTHHHHHHTCTTSSSTT---HHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEeEecCHHHHHHHHHHHccCce---ecchhhhcccCceEEEEeecchhHHHHHHHhCCCCh
Confidence            46667888899999999999999   99999999999  99999999999999999999984

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=5.3e-07  Score=76.45  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++++..+++|.+.++.+|   |..++.||.+|  ++||++|.|.|++-|-++|+++|
T Consensus        35 ~k~~~lt~e~a~~~Y~~~~~k~f---~~~lv~~m~SGp~~~l~l~g~nav~~~r~l~Gpt~p   93 (137)
T d1wkja1          35 LKLMQISQELAERHYAEHREKPF---FPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHP   93 (137)
T ss_dssp             EEEECCCHHHHHHHTGGGSSSSS---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEeecCCHHHHHhhhHHHhcccc---cccceeeeccCCEEEEEEEecchhhhhhhhcccCCc
Confidence            46667899999999999999999   99999999999  99999999999999999999883

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=97.73  E-value=8.4e-07  Score=76.43  Aligned_cols=57  Identities=12%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...+||.+.++.||   |..++.||.+|  ++||++|.|.|++.|-++|++.|
T Consensus        36 ~k~~~ls~e~a~~~Y~~~~~k~f---f~~lv~~m~sGpvvalvl~g~~av~~~R~l~Gpt~p   94 (152)
T d2az3a1          36 GKFMRIDEELAHEHYAEHEDKPF---FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDA   94 (152)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             eeeecCCHHHHHHHHHHccCCcc---cccceeccccCCEEEEEEecCCHHHHHHHHhCCCCh
Confidence            45567889999999999999999   99999999999  99999999999999999999883

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.73  E-value=9.4e-07  Score=75.93  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.--.|.+...++|.+.+..+|   |..+|.+|.+|  ++||++|.|.|++-|-++|+++|
T Consensus        35 ~k~~~ls~e~a~~~Y~~~~gk~f---f~~lv~~m~sGPv~a~~l~g~~aV~~~R~l~Gptdp   93 (149)
T d1u8wa_          35 LKLISVERSFAEKHYEDLSSKSF---FSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNP   93 (149)
T ss_dssp             EEEECCCHHHHHHHTCTTSSSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             eeeeeCCHHHHHHHHHHHccchh---hhhhhhhccCCCeeeeecccchHHHHHHHHhccCCc
Confidence            35556788889999999999999   99999999999  99999999999999999999884

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.71  E-value=1.1e-06  Score=75.73  Aligned_cols=69  Identities=19%  Similarity=0.211  Sum_probs=60.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCcccccCCCCCceEecCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDST  131 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~  131 (377)
                      .|.-.+|.+...+||.+++..||   |..++.+|.+|  ++||++|.|.|+..|-++|++.              ....+
T Consensus        37 ~k~~~lt~e~a~~~Y~~~~~k~f---f~~lv~~mtsGpv~al~l~g~naV~~~r~l~Gptd--------------p~~a~   99 (151)
T d1w7wa_          37 IKVLIPTKQFAQQHYHDLKERPF---FNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATD--------------PQKSA   99 (151)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSS--------------GGGSC
T ss_pred             EEEEecCHHHHHHHHHHHHcccc---ccchhhhccCCCEeeEeeccchhHHHHHHHhccCC--------------ccccC
Confidence            46667889999999999999999   99999999999  9999999999999999999988              33445


Q ss_pred             Cccccccc
Q psy4316         132 PNIVQERS  139 (377)
Q Consensus       132 ~~~~~~r~  139 (377)
                      |.++|++.
T Consensus       100 p~siR~~f  107 (151)
T d1w7wa_         100 PGTIRGDL  107 (151)
T ss_dssp             TTSHHHHH
T ss_pred             CCchhHhh
Confidence            66666554

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-06  Score=75.55  Aligned_cols=69  Identities=26%  Similarity=0.356  Sum_probs=60.0

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCcccccCCCCCceEecCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDST  131 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~  131 (377)
                      .|.-.+|.+...+||.+.++.||   |..+|.+|.+|  ++||++|.|.|+..|-++|+++|              ....
T Consensus        37 ~k~~~lt~e~a~~~Y~~~~~k~f---f~~lv~~m~sgPv~al~l~g~naV~~~R~l~Gpt~p--------------~~a~   99 (150)
T d3bbba1          37 MKFLRASEEHLKQHYIDLKDRPF---FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNP--------------ADSK   99 (150)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG--------------GGCC
T ss_pred             EEeecCCHHHHHHHHHHHhcchh---hhhhheeecCCCEeeeeecccChHHHHHHHhCCCCc--------------cccC
Confidence            46667889999999999999999   99999999999  99999999999999999999984              3445


Q ss_pred             Cccccccc
Q psy4316         132 PNIVQERS  139 (377)
Q Consensus       132 ~~~~~~r~  139 (377)
                      |.++|++.
T Consensus       100 p~tiR~~f  107 (150)
T d3bbba1         100 PGTIRGDF  107 (150)
T ss_dssp             TTSHHHHH
T ss_pred             CcchHHhh
Confidence            66666553

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

Probab=97.69  E-value=1e-06  Score=75.13  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=51.7

Q ss_pred             cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      |.-..|++...+||.+.+..||   |..+|.+|.+|  ++|+++|.|.|++.|.++|+++|
T Consensus        40 k~~~lt~e~a~~~Y~~~~~k~f---~~~lv~~m~sGp~~a~~l~g~naV~~~R~l~Gpt~p   97 (143)
T d1ehwa_          40 KMLQAPESVLAEHYQDLRRKPF---YPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDS   97 (143)
T ss_dssp             EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             eeeecCHHHHHHHHHHHhcchh---hhhhhheecCCCEEEEecchhhHHHHHHHHhcCCCc
Confidence            4556788889999999999999   99999999999  99999999999999999999983

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.66  E-value=1.4e-06  Score=74.95  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             hhhhhhCCC-ccccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          43 QNYMERGPH-SFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        43 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      +...+.|=+ .-.|.-..|.+....||.++++.||   |..++.+|.+|  ++||++|.|.|++-|-++|+++|
T Consensus        25 ~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f---~~~lv~~m~sGp~vam~l~g~naV~~~R~l~Gptdp   95 (150)
T d1hlwa_          25 ARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPF---FGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNP   95 (150)
T ss_dssp             HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred             HHHHHCCCEEEEeeeecCCHHHHHHHHHhccCCcc---ccccccccccCCeeeEEeecccHHHHHHHhhcCCCc
Confidence            334444432 2246667788999999999999999   99999999999  99999999999999999999884

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

Probab=97.65  E-value=1e-06  Score=75.10  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...++|.+.++.||   |..++.||.+|  ++||++|.|.|++-|-++|++++
T Consensus        36 ~k~~~lt~e~a~~~Y~~~~~~~f---f~~lv~~mtSgpvva~vl~g~~av~~~R~l~Gptdp   94 (143)
T d1nhkl_          36 IRLQHLSQAQAEGFYAVHKARPF---FKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNP   94 (143)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred             EEEecCCHHHHHHHHHhhcccch---HHHHHhccCCCCEEEEEEEecchHHHHHHhhcCCCh
Confidence            45567788999999999999999   99999999999  99999999999999999999984

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

Probab=97.62  E-value=1.7e-06  Score=74.51  Aligned_cols=56  Identities=23%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL  112 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  112 (377)
                      .|.-..|.+...+||.+.++.||   |..+|.+|.+|  |+||++|.|.|.+-|-++|++.
T Consensus        38 ~k~~~lt~e~a~~~Y~~~~~k~f---~~~Lv~~m~sGpvva~~l~g~nav~~~R~l~Gptd   95 (152)
T d1zs6a1          38 LKLVQASEELLREHYAELRERPF---YGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN   95 (152)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSS
T ss_pred             EeeeeCCHHHHHHHHHHhhcccc---HHHHHhhcCCCCEEEEeccchhHHHHHHHHcCCCC
Confidence            35667788899999999999999   99999999999  9999999999999999999998

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2.1e-06  Score=72.34  Aligned_cols=57  Identities=16%  Similarity=0.103  Sum_probs=52.5

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...++|.+.++.||   |..++.||.+|  ++||++|.|.|++-|.++|++.|
T Consensus        35 ~k~~~lt~e~a~~~Y~~~~~~~f---f~~lv~~m~SGp~~~l~l~g~nav~~~r~l~Gptdp   93 (135)
T d1k44a_          35 LQLRTVSAELASQHYAEHEGKPF---FGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDP   93 (135)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred             EEeccCCHHHHHHHHHHHhcccc---ccccceeecccCceeecccCccHHHHHHHHhCCCCc
Confidence            35556888899999999999999   99999999999  99999999999999999998884

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.55  E-value=1.9e-06  Score=73.84  Aligned_cols=57  Identities=16%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-.++.+...++|.+.++.||   |..+|.+|.+|  |+||++|.|.|++-|.++|++.|
T Consensus        35 ~k~~~lt~e~a~~~Y~~~~~k~f---f~~lv~~mtsGp~v~~~l~~~nav~~~R~l~Gptdp   93 (149)
T d1xiqa_          35 IKMLNPTEEILKEHYKELSDQPF---FKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNP   93 (149)
T ss_dssp             EEEECCCHHHHHHHTGGGSSSSS---CTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred             EEeecCCHHHHHHHHHHHccccc---cchhhhhcccCCEEEEEeccchhhHHHHHhccCCCc
Confidence            46667888999999999999999   99999999999  99999999999999999999883

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.39  E-value=3.2e-06  Score=74.79  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             chhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCcccccCCCCCceEecCCCCcccccccc
Q psy4316          74 SEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNIVQERSE  140 (377)
Q Consensus        74 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~~~~~~~r~~  140 (377)
                      .||   |..+|.||.+|  ++||++|.|.|++.|-++|+++              ....+|.++|++..
T Consensus        89 k~f---~~~Lv~~mtSgPvva~vleg~~aV~~~R~l~Gptd--------------P~~A~pgtIR~~fg  140 (182)
T d1xqia1          89 RII---KRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTS--------------PHSAPPGTIRGDYS  140 (182)
T ss_dssp             HHH---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSC--------------GGGSCTTSHHHHHC
T ss_pred             Ccc---hHHHHHHHhcCceEEEEecccCHHHHHHHHhCCCC--------------cccCCCCccHHhhC
Confidence            456   99999999999  9999999999999999999999              44445777776654

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

Probab=97.39  E-value=6.7e-06  Score=68.57  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             CccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316          59 WSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL  112 (377)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  112 (377)
                      .+++..+.+|.+.+..||   |.+++.||.+|  ++||++|.|.|++.|-++|++.
T Consensus        40 ~~~~~a~~~y~~~~~k~f---~~~lv~~m~sGpv~al~l~g~naV~~~R~l~G~~~   92 (128)
T d2b8qa1          40 APRNLIEQHYKEHSEQSY---FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNIL   92 (128)
T ss_dssp             CCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCTT
T ss_pred             hHHHHHHHhhhhhcccch---hcchhhcCCCCCEEEeeeeccchHHHHHHhccccC
Confidence            456677889999999999   99999999999  9999999999999999999764

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.22  E-value=7.4e-06  Score=70.46  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=52.1

Q ss_pred             ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316          54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP  113 (377)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
                      .|.-..|.+...++|.+.++.||   |..++.+|.+|  ++||++|.|.|+.-|-++|++.|
T Consensus        36 ~k~~~lt~e~a~~~Y~~~~~~~f---~~~lv~~m~sGp~~alvl~~~nav~~~r~l~Gptdp   94 (153)
T d2dyaa1          36 MKMIWIDRELAEKHYEEHREKPF---FKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDP   94 (153)
T ss_dssp             EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred             EEeeccCHHHHHHHHHHHhcccc---hHHHHHHHhhcceeeeeecccCHHHHHHHHhCCCCh
Confidence            35556778888999999999999   99999999999  99999999999999999999984

>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
superfamily: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
family: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
domain: cAMP-dependent protein kinase type I-alpha regulatory subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.19  E-value=0.0084  Score=42.09  Aligned_cols=41  Identities=10%  Similarity=0.377  Sum_probs=33.6

Q ss_pred             hHhhhhhh-cchhHHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q psy4316         321 AHKIYLRE-FVYPTLQKGLAELVRMKPAHSYEWFVNWLLEND  361 (377)
Q Consensus       321 ~~r~YL~~-~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nN  361 (377)
                      ....|+++ +|-.+|-..+..||-.||++|+.||-+|..+-.
T Consensus         4 ece~Yvq~Hniq~lLKdcIVqLCi~rPe~P~~FLreyFekLe   45 (50)
T d2ezwa1           4 ECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLE   45 (50)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            35678888 556666678999999999999999999987643