Psyllid ID: psy4337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFIS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccccccHcHHEHHHHcc
Coil and Loop (DISEMBL)
capvagvnfrKLQTCVkskgpeilaqfgdrtdalegrkfvptividdLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIEssqdidfeeneyiyddiEDDVEYYIEssqdidfeeneyiyddiedECFIAVFIS
Flexible Loop (DISEMBL)
capvagvnfrklqtcvkskgpeilaqfgdrtdalegrKFVPTIVIDDLDQFESEIESllvgkkkrldkdkqdrmdelkakverhryhirKLETLLRMLDNMSVEVDQIRRIKDDVEYYiessqdidfeeneYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFIS
Low Complexity Region (SEG)
CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGkkkrldkdkqdrmdELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQdidfeeneyiyddieddveyyieSSQdidfeeneyiyddiedecfiAVFIS
Disordered region (IsUnstruct)
*****GVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLV*********************ERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFI*
Disordered Region (DISOPRED)
*APVAGVNFRKLQTCV**********************FVPTIVIDDLDQF*****************************VERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEY*************************IAVFIS
Disordered Region (DISEMBL)
CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFIS
Disordered Region (DISPRO)
CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGK******DKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYI****************DIEDECFIAVFIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRxxxxxxxxxxxxxxxxxxxxxLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q8K0V4	751	CCR4-NOT transcription co	yes	N/A	0.522	0.121	0.673	4e-25
O75175	753	CCR4-NOT transcription co	yes	N/A	0.522	0.120	0.673	7e-25
O13870	640	General negative regulato	yes	N/A	0.494	0.134	0.379	8e-11
P06102	836	General negative regulato	yes	N/A	0.316	0.065	0.4	3e-07
Q12514	560	General negative regulato	no	N/A	0.333	0.103	0.379	3e-06

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 80/92 (86%), Gaps = 1/92 (1%)

Query: 48  LDQFESEIESLLV-GKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
           +DQFESE+ESL V  +KK+ DKDKQDR++ LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct: 139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query: 107 QIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
            IR+IKDDVEYY++SSQD DFEENE++YDD++
Sbjct: 199 AIRKIKDDVEYYVDSSQDPDFEENEFLYDDLD 230

The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 80/92 (86%), Gaps = 1/92 (1%)

Query: 48  LDQFESEIESLLV-GKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
           +DQFESE+ESL V  +KK+ DKDKQDR++ LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct: 139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query: 107 QIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
            IR+IKDDVEYY++SSQD DFEENE++YDD++
Sbjct: 199 AIRKIKDDVEYYVDSSQDPDFEENEFLYDDLD 230

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 52  ESEIESLLVG-KKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRR 110
           E+E ESL    K+ + D  K   + EL++++ERH++H  KLE ++R L+N  +  + +  
Sbjct: 142 EAEAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDKLELIMRRLENSQISPEAVND 201

Query: 111 IKDDVEYYIESSQDIDFEENEYIYDDI 137
           I++D+ YY+E SQ  DF E+E +YD++
Sbjct: 202 IQEDIMYYVECSQSEDFAEDENLYDEL 228

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 40/55 (72%)

Query: 83  RHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDI 137
           R+R+H +++E  LR+L N  ++   ++ ++DD+ Y++ES+QD DF E+E IYD +
Sbjct: 176 RYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVEDETIYDGL 230

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query: 80  KVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDI 137
           + ERH +HI  LE +L+ L N  ++ + +   +DD++YY+E++ D DF E + IY+D+
Sbjct: 153 QTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYEDM 210

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
340719054	684	PREDICTED: hypothetical protein LOC10064	0.545	0.138	0.855	6e-38
383854016	684	PREDICTED: uncharacterized protein LOC10	0.545	0.138	0.855	8e-38
328783040	660	PREDICTED: hypothetical protein LOC41179	0.545	0.143	0.855	9e-38
350398995	684	PREDICTED: hypothetical protein LOC10074	0.545	0.138	0.855	1e-37
380013204	660	PREDICTED: uncharacterized protein LOC10	0.545	0.143	0.855	1e-37
307206931	681	CCR4-NOT transcription complex subunit 3	0.545	0.139	0.845	1e-37
332030498	765	CCR4-NOT transcription complex subunit 3	0.545	0.124	0.824	7e-37
307178384	700	CCR4-NOT transcription complex subunit 3	0.545	0.135	0.814	1e-36
322785939	682	hypothetical protein SINV_80465 [Solenop	0.545	0.139	0.824	1e-36
357627853	752	hypothetical protein KGM_01172 [Danaus p	0.545	0.126	0.742	2e-34

>gi|340719054|ref|XP_003397972.1| PREDICTED: hypothetical protein LOC100648868 [Bombus terrestris]

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 90/97 (92%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQ+ DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVE 235

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854016|ref|XP_003702518.1| PREDICTED: uncharacterized protein LOC100878851 [Megachile rotundata]

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 90/97 (92%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQ+ DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVE 235

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783040|ref|XP_395261.3| PREDICTED: hypothetical protein LOC411794 [Apis mellifera]

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 90/97 (92%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQ+ DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVE 235

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398995|ref|XP_003485377.1| PREDICTED: hypothetical protein LOC100749312 [Bombus impatiens]

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 90/97 (92%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQ+ DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVE 235

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013204|ref|XP_003690656.1| PREDICTED: uncharacterized protein LOC100868746 [Apis florea]

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 90/97 (92%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQ+ DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVE 235

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206931|gb|EFN84777.1| CCR4-NOT transcription complex subunit 3 [Harpegnathos saltator]

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/97 (84%), Positives = 89/97 (91%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           LD FESEIESLL GKKKRLDKDKQDRMDELK K+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 139 LDTFESEIESLLAGKKKRLDKDKQDRMDELKTKLDKHRYHIRKLETLLRMLDNMSVEVNT 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIK+DVEYYIESSQD DFEENEYIYDDI   D+VE
Sbjct: 199 IKRIKEDVEYYIESSQDPDFEENEYIYDDIIGLDEVE 235

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030498|gb|EGI70186.1| CCR4-NOT transcription complex subunit 3 [Acromyrmex echinatior]

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/97 (82%), Positives = 89/97 (91%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           +D FESEIESL  GKKKR+DKDKQDR+DELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 217 MDTFESEIESLQAGKKKRIDKDKQDRVDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 276

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQD DFEENEYIYDDI   D+VE
Sbjct: 277 IKRIKDDVEYYIESSQDPDFEENEYIYDDIIGLDEVE 313

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178384|gb|EFN67129.1| CCR4-NOT transcription complex subunit 3 [Camponotus floridanus]

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/97 (81%), Positives = 88/97 (90%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           +D FESEIESL  GKKKR+DKDKQDR+DELK K+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 152 MDTFESEIESLQAGKKKRIDKDKQDRVDELKTKLDKHRYHIRKLETLLRMLDNMSVEVNT 211

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQD DFEENEYIYDDI   D+VE
Sbjct: 212 IKRIKDDVEYYIESSQDPDFEENEYIYDDIIGLDEVE 248

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785939|gb|EFZ12558.1| hypothetical protein SINV_80465 [Solenopsis invicta]

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/97 (82%), Positives = 89/97 (91%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           +D FESEIESL  GKKKR+DKDKQDR+DELKAK+++HRYHIRKLETLLRMLDNMSVEV+ 
Sbjct: 134 MDTFESEIESLQAGKKKRIDKDKQDRVDELKAKLDKHRYHIRKLETLLRMLDNMSVEVNT 193

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDI--EDDVE 142
           I+RIKDDVEYYIESSQD DFEENEYIYDDI   D+VE
Sbjct: 194 IKRIKDDVEYYIESSQDPDFEENEYIYDDIIGLDEVE 230

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627853|gb|EHJ77399.1| hypothetical protein KGM_01172 [Danaus plexippus]

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/97 (74%), Positives = 88/97 (90%), Gaps = 2/97 (2%)

Query: 48  LDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
           +D FESE+ESLLVGKKKRLDK+KQDRM+ELK K+ERHR+HI+KLETLLRMLDNMSVEV+Q
Sbjct: 139 IDLFESEVESLLVGKKKRLDKEKQDRMEELKLKLERHRFHIKKLETLLRMLDNMSVEVEQ 198

Query: 108 IRRIKDDVEYYIESSQDIDFEENEYIYDDIE--DDVE 142
           I+RIK+DVEYYI SS +  +EEN+YIY+DI   D++E
Sbjct: 199 IKRIKEDVEYYIVSSLEPGYEENDYIYEDINGLDEIE 235

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.436	0.090	0.552	7.5e-17
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.436	0.084	0.597	1.7e-16
ZFIN|ZDB-GENE-030131-5838	908	cnot3b "CCR4-NOT transcription	0.436	0.083	0.584	1.8e-16
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.436	0.107	0.571	3.2e-16
UNIPROTKB|F1RNH3	719	CNOT3 "Uncharacterized protein	0.436	0.105	0.571	3.3e-16
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.436	0.102	0.571	3.5e-16
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.436	0.101	0.571	3.5e-16
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.436	0.101	0.571	3.5e-16
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.436	0.100	0.571	3.5e-16
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.436	0.100	0.571	3.5e-16

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 42/76 (55%), Positives = 55/76 (72%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXELKAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107
             +DQ+ESEIESLL G              +L+ K++RH++HI KLETLLR+LDN  VE +Q
Sbjct:   144 IDQYESEIESLLAGKKKRLDRDKQERMDDLRGKLDRHKFHITKLETLLRLLDNDGVEAEQ 203

Query:   108 IRRIKDDVEYYIESSQ 123
             + +IKDDVEYYI+SSQ
Sbjct:   204 VNKIKDDVEYYIDSSQ 219

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 46/77 (59%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +ERHRYHIR LET+LRMLDN S++VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHIRMLETILRMLDNDSIQVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              I +IKDDVEYYI+SSQ
Sbjct:   199 AIHKIKDDVEYYIDSSQ 215

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-5838 cnot3b "CCR4-NOT transcription complex, subunit 3b" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 45/77 (58%), Positives = 55/77 (71%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +ERHR+HIR LET+LRMLDN S++VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRFHIRMLETILRMLDNDSIQVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 SIRKIKDDVEYYLDSSQ 215

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RNH3 CNOT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    48 LDQFESEIESLLVGXXXXXXXXXXXXXXE-LKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
             +DQFESE+ESL V               E LK  +E+HRYH+R LET+LRMLDN S+ VD
Sbjct:   139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198

Query:   107 QIRRIKDDVEYYIESSQ 123
              IR+IKDDVEYY++SSQ
Sbjct:   199 AIRKIKDDVEYYVDSSQ 215

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75175	CNOT3_HUMAN	No assigned EC number	0.6739	0.5229	0.1208	yes	N/A
Q8K0V4	CNOT3_MOUSE	No assigned EC number	0.6739	0.5229	0.1211	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
pfam04065	233	pfam04065, Not3, Not1 N-terminal domain, CCR4-Not	5e-28
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	8e-12

>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component

 Score =  103 bits (260), Expect = 5e-28
 Identities = 47/96 (48%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 48  LDQFESEIESLLVGKKKR-LDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
           ++  E+E+ESL V +KKR  D  KQ+R+ EL+  +ERH++HI KLE +LR+L+N  ++ +
Sbjct: 138 IELLEAEVESLSVQRKKRKADAAKQERIAELEELLERHKFHISKLELILRLLENGELDPE 197

Query: 107 QIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVE 142
           Q+  IK+D+EYY+ES+Q+ DF E+E IYDD+  D E
Sbjct: 198 QVDDIKEDIEYYVESNQEPDFVEDETIYDDLNLDEE 233

Length = 233

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score = 62.0 bits (150), Expect = 8e-12
 Identities = 23/68 (33%), Positives = 44/68 (64%)

Query: 75  DELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIY 134
            E + + ERH +HI  LE +L+ L N  ++ + +   +DD++YY+E++ D DF E + IY
Sbjct: 134 QENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIY 193

Query: 135 DDIEDDVE 142
           +D+  +++
Sbjct: 194 EDMGCEIQ 201

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	100.0
KOG2150|consensus	575		99.91
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	99.86
KOG3160|consensus	220		95.8
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	95.75
PF11123	82	DNA_Packaging_2: DNA packaging protein ; InterPro:	92.42
PHA00425	88	DNA packaging protein, small subunit	90.09
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	80.61

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=100.00  E-value=2.7e-37  Score=260.35  Aligned_cols=131  Identities=45%  Similarity=0.672  Sum_probs=118.9

Q ss_pred             HHHhhhc-chhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhH
Q psy4337          12 LQTCVKS-KGPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHR   85 (174)
Q Consensus        12 i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk   85 (174)
                      .++.++| .|....++++|.++++.+++.||+++|++|    |++|+|+|+| +++||||+++.+++|+++++.+++||+
T Consensus        97 sKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk  176 (233)
T PF04065_consen   97 SKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHK  176 (233)
T ss_pred             hcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHH
Confidence            3566777 465555667899999999999999999999    9999999999 566666677778999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCcchh
Q psy4337          86 YHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVE  142 (174)
Q Consensus        86 ~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~Lde~  142 (174)
                      |||.+||+|||+|+|+.|+|++|++|||||+|||++|++|||+++++|||+|+|++.
T Consensus       177 ~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~Df~ede~iYddl~Ldee  233 (233)
T PF04065_consen  177 FHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDPDFEEDEDIYDDLNLDEE  233 (233)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCcccchHhHhhccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999863

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2150|consensus

Probab=99.91  E-value=3.1e-25  Score=204.35  Aligned_cols=122  Identities=34%  Similarity=0.506  Sum_probs=110.4

Q ss_pred             hHHHhhhcc-hhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhH
Q psy4337          11 KLQTCVKSK-GPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHR   85 (174)
Q Consensus        11 ~i~~C~~s~-G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk   85 (174)
                      .+++.++|+ |.-...+.+++++++.++.+||+++|++|    |+||+                     ++++++++||+
T Consensus        96 e~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea---------------------~~~e~~~erh~  154 (575)
T KOG2150|consen   96 EMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA---------------------EELERFIERHR  154 (575)
T ss_pred             HhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            456777874 55555567899999999999999999999    66666                     77999999999


Q ss_pred             HHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCcchhhhhhcccCCCc
Q psy4337          86 YHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDF  153 (174)
Q Consensus        86 ~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~Lde~~~~~~~~~~~~  153 (174)
                      |||.+||++||+|+|+.++|+.|++++|||.|||++||+|||.+++.+|++|+|++.........+.+
T Consensus       155 ~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l~le~~e~~~~~~~~~~  222 (575)
T KOG2150|consen  155 WHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDLNLEELEASMDAVAPGS  222 (575)
T ss_pred             HHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhccCchhhhhhHhhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999998888877776

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=99.86  E-value=3e-22  Score=178.56  Aligned_cols=107  Identities=27%  Similarity=0.483  Sum_probs=94.2

Q ss_pred             HHHhhhc-chhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHH
Q psy4337          12 LQTCVKS-KGPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRY   86 (174)
Q Consensus        12 i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~   86 (174)
                      |+..+-| .|.-.-...++++..+...+.||.+++++|    |++||+                     +++.+++||+|
T Consensus        87 mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~---------------------e~e~~~erh~~  145 (548)
T COG5665          87 MKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ---------------------ENEEQTERHEF  145 (548)
T ss_pred             HHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH---------------------HhHHHHHHHHH
Confidence            3444555 355555566888888889999999999999    666665                     68999999999


Q ss_pred             HHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCc
Q psy4337          87 HIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIED  139 (174)
Q Consensus        87 Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~L  139 (174)
                      ||.+||+|||.|+|.+++|+-|++|++||.||||+|++|||.++++||++||.
T Consensus       146 h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~~df~e~~~~y~~~~~  198 (548)
T COG5665         146 HIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYEDMGC  198 (548)
T ss_pred             HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCCcchhhhhhHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999994

>KOG3160|consensus

Probab=95.80  E-value=0.0038  Score=52.81  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=38.5

Q ss_pred             CCCCCCCChhhHHHhhhc-chhhHHHhcCCchhhhhccCcchh
Q psy4337           1 CAPVAGVNFRKLQTCVKS-KGPEILAQFGDRTDALEGRKFVPT   42 (174)
Q Consensus         1 Ca~~~~v~~~~i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~   42 (174)
                      |++..+.+++.|+.|+.| .|.+|+.++|.+|.++.|.+.|+-
T Consensus       140 C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VP  182 (220)
T KOG3160|consen  140 CLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVP  182 (220)
T ss_pred             HHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcC
Confidence            888999999999999999 799999999999999888877763

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=95.75  E-value=0.018  Score=49.19  Aligned_cols=92  Identities=37%  Similarity=0.579  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhCC-------CCChhHHhhhhhHHH---HHHhh------CCCCCCcccccccccc
Q psy4337          74 MDELKAKVERHRYHIRKLETLLRMLDNM-------SVEVDQIRRIKDDVE---YYIES------SQDIDFEENEYIYDDI  137 (174)
Q Consensus        74 ~~~l~~~ierhk~Hi~kLE~llR~L~N~-------~l~~e~v~~ikedie---yYve~------nqd~df~ede~iYd~L  137 (174)
                      ..=|...|+..+-+|..+|.=+-.|.+.       .-..+.+..++.-|+   +.|..      .-+-+..+++.+. +|
T Consensus       124 ~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~-~i  202 (233)
T PF04065_consen  124 RDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVE-DI  202 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence            3445556666777777777766655543       233444444443332   22211      0122345555565 36


Q ss_pred             CcchhhhhhcccCCCcccccccccccccc
Q psy4337         138 EDDVEYYIESSQDIDFEENEYIYDDIEDE  166 (174)
Q Consensus       138 ~Lde~~~~~~~~~~~~~~~~~~y~d~~~~  166 (174)
                      .=+-.+|+++.+.|+|.+.+.|||||+++
T Consensus       203 kedieyYve~n~d~Df~ede~iYddl~Ld  231 (233)
T PF04065_consen  203 KEDIEYYVESNQDPDFEEDEDIYDDLNLD  231 (233)
T ss_pred             HHHHHHHHHcCCCCcccchHhHhhccCCC
Confidence            66779999999999999999999999875

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages

Probab=92.42  E-value=0.83  Score=33.03  Aligned_cols=74  Identities=14%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             HHHH-HhhhHHHHHH--hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhh
Q psy4337          45 IDDL-DQFESEIESL--LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIES  121 (174)
Q Consensus        45 Id~L-e~~EaEvEsL--~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~  121 (174)
                      +..| +++..|+.+.  +-.|---  +....=-..+...++||||||+||          ..+..-+-++...++-|-+-
T Consensus         4 L~klLemlDtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RHkF~iskl----------~pd~~~LG~L~~aL~ey~~~   71 (82)
T PF11123_consen    4 LEKLLEMLDTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRHKFQISKL----------QPDENILGELAAALEEYKKM   71 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHccchhhhc----------CccHHHHHHHHHHHHHHHHH
Confidence            3444 7777777775  3332111  111344567889999999999998          23444455788888888776


Q ss_pred             CCCCCCccc
Q psy4337         122 SQDIDFEEN  130 (174)
Q Consensus       122 nqd~df~ed  130 (174)
                      -...++.++
T Consensus        72 ~g~~~l~~d   80 (82)
T PF11123_consen   72 VGADGLTDD   80 (82)
T ss_pred             cCCCCCCcC
Confidence            555444443

In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].

>PHA00425 DNA packaging protein, small subunit

Probab=90.09  E-value=1.7  Score=31.78  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             HhhhHHHHHH--hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCC
Q psy4337          49 DQFESEIESL--LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQD  124 (174)
Q Consensus        49 e~~EaEvEsL--~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd  124 (174)
                      +.+..|+.+.  +-.|---  +....=-..+...++||||||+||.          .+..-+-++-..++-|-+--..
T Consensus        11 emlDTE~a~~mL~DL~dde--kRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g~   76 (88)
T PHA00425         11 EMLDTEMAQRMLADLKDDE--KRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVGA   76 (88)
T ss_pred             HHHhHHHHHHHHHHhcCcc--ccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcCC
Confidence            7788888776  3332111  1123456678899999999999982          2222334566667767654333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=80.61  E-value=15  Score=30.17  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=54.7

Q ss_pred             CCCCChhhHHHhhhcchhhHHHhc---CC-------chhhhhccCcchhhHHHHHHhhhHHHHHH----hhccCCCCCCc
Q psy4337           4 VAGVNFRKLQTCVKSKGPEILAQF---GD-------RTDALEGRKFVPTIVIDDLDQFESEIESL----LVGKKKRLDKD   69 (174)
Q Consensus         4 ~~~v~~~~i~~C~~s~G~eLLak~---gd-------~T~al~e~~~wL~~~Id~Le~~EaEvEsL----~~~kKkK~~~~   69 (174)
                      .-||....|+.++++...++|=..   |-       +.++..-....+.....+++..+..++.|    ...+++|..+.
T Consensus        24 ~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~  103 (188)
T PF03962_consen   24 EKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE  103 (188)
T ss_pred             ccCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            368999999999998544555433   21       11222222222222222224444444444    23344444431


Q ss_pred             -hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhh
Q psy4337          70 -KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIES  121 (174)
Q Consensus        70 -~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~  121 (174)
                       ....+++++..-..++--...|+    .+  ...+|+.|..++.++...++.
T Consensus       104 eR~~~l~~l~~l~~~~~~l~~el~----~~--~~~Dp~~i~~~~~~~~~~~~~  150 (188)
T PF03962_consen  104 EREELLEELEELKKELKELKKELE----KY--SENDPEKIEKLKEEIKIAKEA  150 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HH--HhcCHHHHHHHHHHHHHHHHH
Confidence             22223333332222222222222    11  346999999999988887765

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00