Psyllid ID: psy4354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSlapqlgwkdpeymdRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVlmagkkpdtsdnktshfiffkkrkffrikkctnvvppspnklsinvidednginnattsssliladghsnsdadrrtsinneantaftithnngasqsnhnnecvqvkhkipptkkekKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGyfnstlnpviytvFSPEFRQAFKRILcgspnrgrfr
Flexible Loop (DISEMBL)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIrrrrqqrnvlmagkkpdtsdnktshfiffkkrkffrikkctnvvppspnklsinvidednginnATTSSSLILADGHSNSDADRRTSINNEANTAFTITHnngasqsnHNNECVqvkhkipptkkekkeslEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIlcgspnrgrfr
Low Complexity Region (SEG)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTArkrirrrrqqrNVLMAGKKPDTSDNKTSHfiffkkrkffrikkCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVkhkipptkkekkeSLEAKRERKAAKTLAIITGAFVICWlpffmmalllplCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR
Disordered region (IsUnstruct)
**QLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRI***********************SHFIFFKKRKFFRIKKCTNVVPPS*NKLSINVI************************************************************************************KTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCG********
Disordered Region (DISOPRED)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRR*************************************************NVIDEDNGINNATT**********************************************************************KAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRG***
Disordered Region (DISEMBL)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILAD********RRTSINNEANTAFTITHNNGASQSNHNNECVQVK**********************AKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR
Disordered Region (DISPRO)
**QLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIR**********************************************************************************************************************************EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSP******
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q25190	466	5-hydroxytryptamine recep	N/A	N/A	0.874	0.641	0.545	2e-86
Q17239	446	5-hydroxytryptamine recep	N/A	N/A	0.824	0.632	0.461	1e-65
Q25414	509	5-hydroxytryptamine recep	N/A	N/A	0.853	0.573	0.393	4e-57
Q64264	421	5-hydroxytryptamine recep	yes	N/A	0.812	0.660	0.330	1e-46
P19327	422	5-hydroxytryptamine recep	yes	N/A	0.815	0.661	0.340	2e-46
Q25188	477	Octopamine receptor OS=He	N/A	N/A	0.850	0.610	0.309	8e-46
O42385	423	5-hydroxytryptamine recep	N/A	N/A	0.783	0.633	0.343	3e-45
Q6XXX9	423	5-hydroxytryptamine recep	yes	N/A	0.801	0.647	0.348	1e-44
Q9N298	422	5-hydroxytryptamine recep	yes	N/A	0.807	0.654	0.334	1e-44
Q0EAB6	422	5-hydroxytryptamine recep	yes	N/A	0.792	0.642	0.322	2e-44

>sp|Q25190|5HTR_HELVI 5-hydroxytryptamine receptor OS=Heliothis virescens PE=2 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/332 (54%), Positives = 219/332 (65%), Gaps = 33/332 (9%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI-NQQ 81
           V +  D+YWAVT+VDYIH RN  RI  MIV+VW  A +VSLAPQLGWKDP+Y+ RI  QQ
Sbjct: 154 VAIATDRYWAVTDVDYIHIRNEKRIFTMIVLVWGAALVVSLAPQLGWKDPDYLARITQQQ 213

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFAT STFYVPL VIL+LYWKI+QTAR+RIRRRR           G  P
Sbjct: 214 KCLVSQDLAYQIFATMSTFYVPLAVILILYWKIFQTARRRIRRRRDPPPPRPTSADGATP 273

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T +++L+L +G
Sbjct: 274 SGRPVQSARDRRFVKKRFLNLKKC------------------NQRTRAETLAAALLLTEG 315

Query: 199 HSNSDADRRTSINNEA-NTAFTITHNNGASQSNHNNECVQVKHKIP-------PTKKEKK 250
            S S  D   +++ E   TAFTI      S S   +         P       PT +EKK
Sbjct: 316 QSTSTVD---TLDEEPRTTAFTINEKVPPSVSPEKSSSTVTNGSKPERAIVPAPTHREKK 372

Query: 251 ESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNS 310
           ESLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQTC ISDYLASFFLWLGYFNS
Sbjct: 373 ESLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQTCVISDYLASFFLWLGYFNS 432

Query: 311 TLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
           TLNPVIYT+FSP+FRQAF RIL G+  R R++
Sbjct: 433 TLNPVIYTIFSPDFRQAFARILFGTHRRRRYK 464

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.
Heliothis virescens (taxid: 7102)

>sp|Q17239|5HTR_BOMMO 5-hydroxytryptamine receptor OS=Bombyx mori PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 190/314 (60%), Gaps = 32/314 (10%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ- 81
           V + +D+YWAVTN+DYIH   A R+ MMI  VW+V+F V +A  LGWKDP++  R+++  
Sbjct: 153 VAIALDRYWAVTNIDYIHASTAKRVGMMIACVWTVSFFVCIAQLLGWKDPDWNQRVSEDL 212

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTS 141
           +C+VSQDVGYQIFAT S+FYVP+L+IL+LYW+IYQTARKRIRRRR        G  P  +
Sbjct: 213 RCVVSQDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGPPPVPA 272

Query: 142 DNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN 201
                            +      +P          I E         SS        +N
Sbjct: 273 GGALVAGGGSGGIAAAVVAVIGRPLP---------TISETTTTGFTNVSS--------NN 315

Query: 202 SDADRRTSINN-EANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERK 260
           +  ++++  N  EA+     T   GA  + +    V         +++ KE+ ++KRERK
Sbjct: 316 TSPEKQSCANGLEADPP---TTGYGAVAAAYYPSLV---------RRKPKEAADSKRERK 363

Query: 261 AAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVF 320
           AAKTLAIITGAFV CWLPFF++A+L+P C  C +S  L S  LWLGYFNSTLNPVIYTVF
Sbjct: 364 AAKTLAIITGAFVACWLPFFVLAILVPTCD-CEVSPVLTSLSLWLGYFNSTLNPVIYTVF 422

Query: 321 SPEFRQAFKRILCG 334
           SPEFR AF+R+LCG
Sbjct: 423 SPEFRHAFQRLLCG 436

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.

Bombyx mori (taxid: 7091)

>sp|Q25414|5HTR_LYMST 5-hydroxytryptamine receptor OS=Lymnaea stagnalis PE=2 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 190/346 (54%), Gaps = 54/346 (15%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82
           V + +D+YWAVT++DYI  R+A RI++MI+VVW VA  +S+ P  GW+DP   D      
Sbjct: 187 VAIAMDRYWAVTSIDYIRRRSARRILLMIMVVWIVALFISIPPLFGWRDPNN-DPDKTGT 245

Query: 83  CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIR---------RRRQQRNVLM 133
           C++SQD GY IF+T   FY+P+LV++++Y +I+  AR RIR         R + +   L+
Sbjct: 246 CIISQDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV 305

Query: 134 AGKK--------------PDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNK---LSIN 176
           A  K              PD++  K       K+R  F+   C+    P P +    +  
Sbjct: 306 ASPKTEYSVVSDCNGCNSPDSTTEKK------KRRAPFKSYGCS----PRPERKKNRAKK 355

Query: 177 VIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV 236
           + +  NG+N+ ++S             ++R   I  E   AF       AS +    +C 
Sbjct: 356 LPENANGVNSNSSS-------------SERLKQIQIETAEAFANGCAEEASIAMLERQCN 402

Query: 237 QVKHKIPPTK---KEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY 293
             K KI          +E LE KRERKAA+TLAIITGAF+ICWLPFF++AL+ P      
Sbjct: 403 NGK-KISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPFVDPEG 461

Query: 294 ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRG 339
           I  +  SF LWLGYFNS LNP+IYT+FSPEFR AF++IL G   RG
Sbjct: 462 IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYRRG 507

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.

Lymnaea stagnalis (taxid: 6523)

>sp|Q64264|5HT1A_MOUSE 5-hydroxytryptamine receptor 1A OS=Mus musculus GN=Htr1a PE=2 SV=2

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 165/312 (52%), Gaps = 34/312 (10%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR N  +C +
Sbjct: 132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSNPNECTI 189

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKT 145
           S+D GY I++T   FY+PLL++LVLY +I++ AR RIR+  ++     AG    TS    
Sbjct: 190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKKGAGTSFGTSS--- 246

Query: 146 SHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDAD 205
                                PP    L+      D   +    +     A+G      D
Sbjct: 247 --------------------APPPKKSLNGQPGSGDCRRSAENRAVGTPCANGAVRQGED 286

Query: 206 RRT----SINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKA 261
             T     ++   N+   +   + +  +++   C++ K++      E K  +   RERK 
Sbjct: 287 DATLEVIEVHRVGNSKGHLPLPSESGATSYVPACLERKNE---RTAEAKRKMALARERKT 343

Query: 262 AKTLAIITGAFVICWLPFFMMALLLPLCQ-TCYISDYLASFFLWLGYFNSTLNPVIYTVF 320
            KTL II G F++CWLPFF++AL+LP C+ +C++ + L +   WLGY NS LNPVIY  F
Sbjct: 344 VKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPELLGAIINWLGYSNSLLNPVIYAYF 403

Query: 321 SPEFRQAFKRIL 332
           + +F+ AFK+I+
Sbjct: 404 NKDFQNAFKKII 415

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Mus musculus (taxid: 10090)

>sp|P19327|5HT1A_RAT 5-hydroxytryptamine receptor 1A OS=Rattus norvegicus GN=Htr1a PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 165/311 (53%), Gaps = 32/311 (10%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct: 132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKT 145
           S+D GY I++T   FY+PLL++LVLY +I++ AR RIR+  ++     AG    TS    
Sbjct: 190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSSAPP 249

Query: 146 SHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDAD 205
                         KK  N  P S +        E+  +    T+ ++   D  +  +  
Sbjct: 250 P-------------KKSLNGQPGSGD---WRRCAENRAVGTPCTNGAVRQGDDEATLEVI 293

Query: 206 RRTSINNEANTAFTITHNNGASQSNHNN---ECVQVKHKIPPTKKEKKESLEAKRERKAA 262
               + N         H    S+S  N+    C++ K++      E K  +   RERK  
Sbjct: 294 EVHRVGNSKE------HLPLPSESGSNSYAPACLERKNE---RNAEAKRKMALARERKTV 344

Query: 263 KTLAIITGAFVICWLPFFMMALLLPLCQ-TCYISDYLASFFLWLGYFNSTLNPVIYTVFS 321
           KTL II G F++CWLPFF++AL+LP C+ +C++   L +   WLGY NS LNPVIY  F+
Sbjct: 345 KTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPALLGAIINWLGYSNSLLNPVIYAYFN 404

Query: 322 PEFRQAFKRIL 332
            +F+ AFK+I+
Sbjct: 405 KDFQNAFKKII 415

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q25188|OAR_HELVI Octopamine receptor OS=Heliothis virescens PE=2 SV=1

 Score =  184 bits (467), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 58/349 (16%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD-PEYMDRINQQKCM 84
           +D+YWA+T+ ++Y   R   R+++MI VVW ++ I+S  P LGW D P+  +      C 
Sbjct: 148 LDRYWAITDPINYAQKRTLERVLLMIGVVWVLSLIISSPPLLGWNDWPDVFEP--DTPCR 205

Query: 85  VSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNK 144
           ++   G+ IF++  +FY+PL+++ V+Y++IY   +KR+R R +   +       +  +NK
Sbjct: 206 LTSQPGFVIFSSSGSFYIPLVIMTVVYFEIYLATKKRLRDRAKATKISTISSGQNKYNNK 265

Query: 145 TSHF-------------------IFFKKRKFFRIKKCTNVVPP----------SPNKLSI 175
             H                    +     K  R +K T    P          S NKL I
Sbjct: 266 DDHHDQDSVSSEANHNEHQGVTRLVSDNEKKKRTRKLTPKKKPKRKYWSKDDKSQNKLII 325

Query: 176 NVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC 235
            ++  +N + +   +    L + +++S+++ +             TH +   + N     
Sbjct: 326 PILSNENSVTDMGEN----LENRNTSSESNSKE------------THEDDLIEVNETVP- 368

Query: 236 VQVKHKIP-PTKK-------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLP 287
           V+  HK P P ++       E+K+ +   RER+AA+TL II G FV+CWLPFF++ L++P
Sbjct: 369 VKTHHKKPKPNQQSAVYQFIEEKQRISLTRERRAARTLGIIMGVFVVCWLPFFVIYLVIP 428

Query: 288 LCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSP 336
            C +C +S+   +F  WLGY NS LNP+IYT+F+ +FR+AFK++LC  P
Sbjct: 429 FCASCCLSNKFINFITWLGYCNSALNPLIYTIFNMDFRRAFKKLLCMKP 477

Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Heliothis virescens (taxid: 7102)

>sp|O42385|5H1AA_TAKRU 5-hydroxytryptamine receptor 1A-alpha OS=Takifugu rubripes GN=htr1aa PE=3 SV=1

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 46/314 (14%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R  ++I V W + F +S+ P LGW+  E  DR N   C++
Sbjct: 141 LDRYWAITDPIDYVNKRTPRRAAVLISVTWLIGFSISIPPMLGWRSAE--DRANPDACII 198

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDN-- 143
           SQD GY I++T   FY+PL+++LVLY +I++ AR RIR+  ++       +K   SD   
Sbjct: 199 SQDPGYTIYSTFGAFYIPLILMLVLYGRIFKAARFRIRKTVKKT------EKAKASDMCL 252

Query: 144 KTSHFIFFKKRKFFRI----KKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGH 199
             S  +F K+     +    K+     P SP          +  + +     SL + + +
Sbjct: 253 TLSPAVFHKRANGDAVSAEWKRGYKFKPSSPCA--------NGAVRHGEEMESLEIIEVN 304

Query: 200 SNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRER 259
           SNS                 +   N    S+H N    +  K   T+++    +   RER
Sbjct: 305 SNSKTH--------------LPLPNTPQSSSHEN----INEKTTGTRRK----IALARER 342

Query: 260 KAAKTLAIITGAFVICWLPFFMMALLLPLC-QTCYISDYLASFFLWLGYFNSTLNPVIYT 318
           K  KTL II G F+ CWLPFF++AL+LP C + CY+ ++L +   WLGY NS LNP+IY 
Sbjct: 343 KTVKTLGIIMGTFIFCWLPFFIVALVLPFCAENCYMPEWLGAVINWLGYSNSLLNPIIYA 402

Query: 319 VFSPEFRQAFKRIL 332
            F+ +F+ AFK+IL
Sbjct: 403 YFNKDFQSAFKKIL 416

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Takifugu rubripes (taxid: 31033)

>sp|Q6XXX9|5HT1A_CANFA 5-hydroxytryptamine receptor 1A OS=Canis familiaris GN=HTR1A PE=3 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 42/316 (13%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct: 132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKT 145
           S+D GY I++T   FY+PLL++LVLY +I++ AR RIR+  ++     A  +   S    
Sbjct: 190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKAERKGADARSGVSPA-- 247

Query: 146 SHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDAD 205
                                 P P K S+N   E  G        S   A G   ++  
Sbjct: 248 ----------------------PQPRK-SVN--GEPGGREWRQGPGS--QAGGPLCTNGA 280

Query: 206 RRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKK--ESLEAK------R 257
            R   +  A     + H  G+S+ +    C        P   EKK   + EAK      R
Sbjct: 281 VRRGDDGAALEVIEV-HRVGSSKEHLPLPCEAGAIPCAPASFEKKNERNAEAKRKMALAR 339

Query: 258 ERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ-TCYISDYLASFFLWLGYFNSTLNPVI 316
           ERK  KTL II G F++CWLPFF++AL+LP C+ +C++   L +   WLGY NS LNPVI
Sbjct: 340 ERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVI 399

Query: 317 YTVFSPEFRQAFKRIL 332
           Y  F+ +F+ AFK+I+
Sbjct: 400 YAYFNKDFQNAFKKIV 415

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Canis familiaris (taxid: 9615)

>sp|Q9N298|5HT1A_PANTR 5-hydroxytryptamine receptor 1A OS=Pan troglodytes GN=HTR1A PE=3 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 164/314 (52%), Gaps = 38/314 (12%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct: 132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKT 145
           S+D GY I++T   FY+PLL++LVLY +I++ AR RIR+           KK + +   T
Sbjct: 190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTV---------KKVEKTGADT 240

Query: 146 SHFIFFKKRKFFRIKKCTNVVPPSPN-KLSI-----NVIDEDNGINNATTSSSLILADGH 199
            H     ++     KK  N    S N +L +       +  +  +      ++L + + H
Sbjct: 241 RHGASPAQQP----KKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVH 296

Query: 200 SNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRER 259
              ++     + +EA      T    AS    N               E K  +   RER
Sbjct: 297 RVGNSKEHLPLPSEAGP----TPCAPASFERKNER-----------NAEAKRKMALARER 341

Query: 260 KAAKTLAIITGAFVICWLPFFMMALLLPLCQ-TCYISDYLASFFLWLGYFNSTLNPVIYT 318
           K  KTL II G F++CWLPFF++AL+LP C+ +C++   L +   WLGY NS LNPVIY 
Sbjct: 342 KTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYA 401

Query: 319 VFSPEFRQAFKRIL 332
            F+ +F+ AFK+I+
Sbjct: 402 YFNKDFQNAFKKII 415

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Pan troglodytes (taxid: 9598)

>sp|Q0EAB6|5HT1A_HORSE 5-hydroxytryptamine receptor 1A OS=Equus caballus GN=HTR1A PE=2 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 162/319 (50%), Gaps = 48/319 (15%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
           +D+YWA+T+ +DY++ R   R   +I + W V F++S+ P LGW+ PE  DR +   C +
Sbjct: 132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLVGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query: 86  SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRR------RRQQRNVLMAGKKPD 139
           S+D GY I++T   FY+PLL++LVLY +I++ AR RIR+      ++   + L A   P 
Sbjct: 190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKKGADSRLGASPAPQ 249

Query: 140 TSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGH 199
              +        + R+    K             +  V+  +  +      ++L + + H
Sbjct: 250 RKKSANGELGSREWRQGVENK-------------AGGVLCANGAVRQGDDGAALEVIEVH 296

Query: 200 SNSDADRRTSINNEANT-----AFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLE 254
              ++     + +EA       AF         + N  N              E K  + 
Sbjct: 297 RMGNSKEHLPLPSEAGAIPCAPAFF-------EKKNERNA-------------EAKRKMA 336

Query: 255 AKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ-TCYISDYLASFFLWLGYFNSTLN 313
             RERK  KTL II G F++CWLPFF++AL+LP C+ +C++   L +   WLGY NS LN
Sbjct: 337 LARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLN 396

Query: 314 PVIYTVFSPEFRQAFKRIL 332
           PVIY  F+ +F+ AFK+IL
Sbjct: 397 PVIYAYFNKDFQNAFKKIL 415

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Equus caballus (taxid: 9796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
325302239	443	serotonin receptor 1A [Gryllus bimaculat	0.935	0.722	0.489	1e-96
357621827	465	serotonin receptor [Danaus plexippus]	0.868	0.638	0.548	3e-88
56044548	466	serotonin receptor [Papilio xuthus]	0.868	0.637	0.546	3e-87
166219095	464	putative serotonin receptor 5HT1A [Anthe	0.868	0.640	0.556	3e-86
113203435	463	putative serotonin receptor [Manduca sex	0.868	0.641	0.559	3e-85
2494933	466	RecName: Full=5-hydroxytryptamine recept	0.874	0.641	0.545	1e-84
189241068	572	PREDICTED: similar to serotonin receptor	0.932	0.557	0.513	3e-82
242022993	483	class A rhodopsin-like G-protein coupled	0.894	0.633	0.482	1e-77
160213432	540	type 1 serotonin receptor [Procambarus c	0.798	0.505	0.478	4e-77
321476733	487	serotonin receptor-like protein [Daphnia	0.777	0.546	0.481	2e-73

>gi|325302239|dbj|BAJ83479.1| serotonin receptor 1A [Gryllus bimaculatus]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/413 (48%), Positives = 249/413 (60%), Gaps = 93/413 (22%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN-QQ 81
           V + VD+YWAVTNVDYIHTRN++RI  MIVVVW+VA IVSLAPQ GWKDPEY+DRIN QQ
Sbjct: 28  VAIAVDRYWAVTNVDYIHTRNSSRIGTMIVVVWAVALIVSLAPQFGWKDPEYLDRINLQQ 87

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVL-----MAGK 136
           + +VSQD+ YQ+FATCSTFYVPLLVILVLYWKI+QTARKRI RRRQQR  +      AG+
Sbjct: 88  RYLVSQDIAYQVFATCSTFYVPLLVILVLYWKIFQTARKRIHRRRQQRPTVTDHASAAGR 147

Query: 137 KPDTSDNK-------------------TSHFIFFKKRKFFRI----KKCTN--------V 165
              T++N                    ++   F  KR+F RI    KK +         V
Sbjct: 148 SGATNNNAPAGGGAGGGAGAGGGGGGASATRRFLSKRRFHRIMSPSKKSSAAEALVSSLV 207

Query: 166 VPPSPNKLSINVIDEDNGINNATTSSSL-------------------------------- 193
           +    +  S++ + +D     A++ + +                                
Sbjct: 208 MVEGQSTASVDAVGDDEETTKASSDNGVGGDAKDEQHAAAGVVTTAFTISKSVEQTGAVG 267

Query: 194 --ILADGHSNSDADRRTS--INNEANTAFTITHNNGASQSNHNNECVQVK---------- 239
             +L  G   + A   TS  ++ E ++  T T+N  AS  +H ++  +V+          
Sbjct: 268 VRLLEGGDGVAVAVLATSNNVSPEKSSTATTTNNGSASHQSHMSDMSRVEILQKDAVIQK 327

Query: 240 ---HKIPPTK-------KEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLC 289
                  P K       ++KKESLEAKRERKAAKTLAIITGAFV+CWLPFF+MALLLPLC
Sbjct: 328 DGSAGTAPEKSVATIHRRDKKESLEAKRERKAAKTLAIITGAFVVCWLPFFIMALLLPLC 387

Query: 290 QTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
           +TCYISD L SFFLWLGYFNSTLNPVIYT+FSPEFRQAFKRILCGS  R R R
Sbjct: 388 ETCYISDSLQSFFLWLGYFNSTLNPVIYTIFSPEFRQAFKRILCGSGRRSRSR 440

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621827|gb|EHJ73524.1| serotonin receptor [Danaus plexippus]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/332 (54%), Positives = 221/332 (66%), Gaps = 35/332 (10%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI-NQQ 81
           V +  D+YWAVT+VDYIH RN  RI  MI +VW  A +VSLAPQLGWKDP+Y+ RI  QQ
Sbjct: 151 VAIATDRYWAVTDVDYIHIRNEKRIFTMIFLVWGAALVVSLAPQLGWKDPDYLARITQQQ 210

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFATCSTFYVPL VIL+LYWKI+QTAR+RIRRRR           G  P
Sbjct: 211 KCLVSQDLAYQIFATCSTFYVPLAVILILYWKIFQTARRRIRRRRDLPPPRPTSADGAPP 270

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T +++L+L +G
Sbjct: 271 SGRPIQSARDRRFVKKRFLNLKKC------------------NQRTRAETIAAALLLTEG 312

Query: 199 HSNSDADRRTSINNEA-NTAFTITHNNGA--------SQSNHNNECVQVKHKIPP-TKKE 248
            S S  D   +++ E   TAFTI     A        S S   N   Q +  +P  + +E
Sbjct: 313 QSTSTVD---TLDEEPRTTAFTINEKGVAPPSVSPEKSSSTATNGSKQERTIVPALSHRE 369

Query: 249 KKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYF 308
           KKESLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQ+C ISDYLASFFLWLGYF
Sbjct: 370 KKESLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQSCVISDYLASFFLWLGYF 429

Query: 309 NSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           NSTLNPVIYT+FSP+FRQAF RIL G+  RGR
Sbjct: 430 NSTLNPVIYTIFSPDFRQAFARILFGTHRRGR 461

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56044548|dbj|BAD72868.1| serotonin receptor [Papilio xuthus]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/331 (54%), Positives = 222/331 (67%), Gaps = 34/331 (10%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ- 81
           V +  D+YWAVTNVDYIH RN  RI  MI +VW  A +VSLAPQLGWKDP+Y+ RI QQ 
Sbjct: 153 VAIATDRYWAVTNVDYIHIRNEKRIFTMIFLVWGAALVVSLAPQLGWKDPDYLARITQQQ 212

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFATCSTFYVPL VIL+LYWKI+QTAR+RIRRRR+          G  P
Sbjct: 213 KCLVSQDLAYQIFATCSTFYVPLAVILILYWKIFQTARRRIRRRREPPPPRPTSADGATP 272

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T +++L+L +G
Sbjct: 273 SGRPVQSARDRRFVKKRFLNLKKC------------------NQRTRAETIAAALLLTEG 314

Query: 199 HSNSDADRRTSINNEA-NTAFTITHNNGASQSNHNNECVQVKHKIPP--------TKKEK 249
            S S  D   +++ E   TAFTI     +S S   +    V +   P        +++EK
Sbjct: 315 QSTSTVD---TLDEEPRTTAFTINEKVPSSVSPEKSSSTTVTNGSKPERAIVPALSQREK 371

Query: 250 KESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFN 309
           KESLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQ+C ISDYLASFFLWLGYFN
Sbjct: 372 KESLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQSCVISDYLASFFLWLGYFN 431

Query: 310 STLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           STLNPVIYT+FSP+FRQAF RIL G+  RGR
Sbjct: 432 STLNPVIYTIFSPDFRQAFARILFGTHRRGR 462

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166219095|gb|ABY85410.1| putative serotonin receptor 5HT1A [Antheraea pernyi]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/329 (55%), Positives = 221/329 (67%), Gaps = 32/329 (9%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI-NQQ 81
           V +  D+YWAVT+VDYIH RN  RI  MI +VW  A +VSLAPQLGWKDP+Y+ RI  QQ
Sbjct: 153 VAIATDRYWAVTDVDYIHIRNERRIFTMIFLVWGAALVVSLAPQLGWKDPDYLARITQQQ 212

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFATCSTFYVPL VIL+LYWKI+QTAR+RIRRRR+Q         G  P
Sbjct: 213 KCLVSQDLAYQIFATCSTFYVPLAVILILYWKIFQTARRRIRRRREQPPPRPTSADGTTP 272

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T ++SL+L +G
Sbjct: 273 SGRPVQSARDRRFVKKRFLNLKKC------------------NQRTRAETLAASLLLTEG 314

Query: 199 HSNSDADRRTSINNEA-NTAFTITHN-----NGASQSNHNNECVQVKHKIPP-TKKEKKE 251
            S S  D   +++ E   TAFTI           S S   N     K  +P  + +EKKE
Sbjct: 315 QSTSTVD---TLDEEPRTTAFTINEKISSVSPEKSSSTVTNGSKPEKAIVPALSHREKKE 371

Query: 252 SLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNST 311
           SLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQ+C ISDYLASFFLWLGYFNST
Sbjct: 372 SLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQSCVISDYLASFFLWLGYFNST 431

Query: 312 LNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           LNPVIYT+FSP+FRQAF RIL G+  RGR
Sbjct: 432 LNPVIYTIFSPDFRQAFARILFGTHRRGR 460

Source: Antheraea pernyi

Species: Antheraea pernyi

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113203435|gb|ABI33826.1| putative serotonin receptor [Manduca sexta]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 224/329 (68%), Gaps = 32/329 (9%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ- 81
           V +  D+YWAVT+VDYIH RN  RI  MI +VW+ A +VSLAPQLGWKDP+Y+ RI QQ 
Sbjct: 152 VAIATDRYWAVTDVDYIHIRNERRIFTMIFLVWAAALVVSLAPQLGWKDPDYLARITQQQ 211

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFATCSTFYVPL VIL+LYWKI+QTAR+RIRRRR+      A   G  P
Sbjct: 212 KCLVSQDLAYQIFATCSTFYVPLAVILILYWKIFQTARRRIRRRREAPPPRPASADGAPP 271

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T +++L+L +G
Sbjct: 272 SGRPVQSARDRRFVKKRFLNLKKC------------------NQRTRAETLAAALLLTEG 313

Query: 199 HSNSDADRRTSINNEA-NTAFTITHNNGA-----SQSNHNNECVQVKHKIP-PTKKEKKE 251
            S S  D   +++ E   TAFTI     +     S S   N     +  +P PT +EKKE
Sbjct: 314 QSTSTVD---TLDEEPRTTAFTINEKAPSVSPEKSSSTVTNGSKPERAIVPAPTHREKKE 370

Query: 252 SLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNST 311
           SLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQTC ISDYLASFFLWLGYFNST
Sbjct: 371 SLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQTCVISDYLASFFLWLGYFNST 430

Query: 312 LNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           LNPVIYT+FSP+FRQAF RIL G+  RGR
Sbjct: 431 LNPVIYTIFSPDFRQAFARILFGTHRRGR 459

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2494933|sp|Q25190.1|5HTR_HELVI RecName: Full=5-hydroxytryptamine receptor; Short=5-HT receptor; AltName: Full=Serotonin receptor gi|1197332|emb|CAA64863.1| serotonin receptor [Heliothis virescens]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/332 (54%), Positives = 219/332 (65%), Gaps = 33/332 (9%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI-NQQ 81
           V +  D+YWAVT+VDYIH RN  RI  MIV+VW  A +VSLAPQLGWKDP+Y+ RI  QQ
Sbjct: 154 VAIATDRYWAVTDVDYIHIRNEKRIFTMIVLVWGAALVVSLAPQLGWKDPDYLARITQQQ 213

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA---GKKP 138
           KC+VSQD+ YQIFAT STFYVPL VIL+LYWKI+QTAR+RIRRRR           G  P
Sbjct: 214 KCLVSQDLAYQIFATMSTFYVPLAVILILYWKIFQTARRRIRRRRDPPPPRPTSADGATP 273

Query: 139 DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADG 198
                +++    F K++F  +KKC                  +      T +++L+L +G
Sbjct: 274 SGRPVQSARDRRFVKKRFLNLKKC------------------NQRTRAETLAAALLLTEG 315

Query: 199 HSNSDADRRTSINNEA-NTAFTITHNNGASQSNHNNECVQVKHKIP-------PTKKEKK 250
            S S  D   +++ E   TAFTI      S S   +         P       PT +EKK
Sbjct: 316 QSTSTVD---TLDEEPRTTAFTINEKVPPSVSPEKSSSTVTNGSKPERAIVPAPTHREKK 372

Query: 251 ESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNS 310
           ESLEAKRERKAAKTLAIITGAFV CWLPFF+MAL++P+CQTC ISDYLASFFLWLGYFNS
Sbjct: 373 ESLEAKRERKAAKTLAIITGAFVFCWLPFFIMALVMPICQTCVISDYLASFFLWLGYFNS 432

Query: 311 TLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
           TLNPVIYT+FSP+FRQAF RIL G+  R R++
Sbjct: 433 TLNPVIYTIFSPDFRQAFARILFGTHRRRRYK 464

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241068|ref|XP_967449.2| PREDICTED: similar to serotonin receptor [Tribolium castaneum] gi|270014259|gb|EFA10707.1| hypothetical protein TcasGA2_TC011960 [Tribolium castaneum]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/360 (51%), Positives = 243/360 (67%), Gaps = 41/360 (11%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL-GWKDPEYMDRINQQ 81
           V + +D+YWAVTNVDYIHTRN++RI +MIVVVWS+A +VSLAPQ+  +KDPEY+ RI ++
Sbjct: 209 VAIALDRYWAVTNVDYIHTRNSHRIGIMIVVVWSIALVVSLAPQIPQFKDPEYLKRIQEK 268

Query: 82  -KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDT 140
            +C+VSQD+ YQIFAT STFYVPLLVI VLYWKI+QTARKRIRRRR+ +  ++  K   T
Sbjct: 269 HQCLVSQDLKYQIFATSSTFYVPLLVIFVLYWKIFQTARKRIRRRREMKGQVVL-KVEKT 327

Query: 141 SDNKTSHFIFFKKRKFFRIKK--------------CTNVVPPSPNKLSINVIDE-----D 181
           ++N      F  KRKF ++KK               + V+    +  ++ +++E      
Sbjct: 328 NNNSKVSKNFLTKRKFLKMKKCSSNKKSSAAEALVSSLVMMEGQSTTTMEIVEEQDEVQS 387

Query: 182 NGINNATTSSSLILADG----HSNSDADRRTSINNEANTAFTITHNNGASQSNH------ 231
           NG    TT+ ++          SN++    ++  +   T+   T+N  AS  +H      
Sbjct: 388 NGKQEETTAFTITKPQTSTLVQSNAEVPLVSNNVSPEKTSSATTNNGSASHQSHISDISR 447

Query: 232 ----NNE---CVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMAL 284
               N E   C     K+ P+++EKKESLEAKRERKAAKTLAIITGAFV+CWLPFF++AL
Sbjct: 448 VEILNKEIPPCPASVDKLIPSRREKKESLEAKRERKAAKTLAIITGAFVMCWLPFFILAL 507

Query: 285 LLPLC-QTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR-FR 342
           L+PLC   C IS+Y++SF LWLGYFNSTLNPVIYT+F+PEFRQAFKRILCG  +RGR FR
Sbjct: 508 LMPLCGAACTISEYISSFALWLGYFNSTLNPVIYTIFNPEFRQAFKRILCGGHSRGRNFR 567

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022993|ref|XP_002431921.1| class A rhodopsin-like G-protein coupled receptor GPR5ht2, putative [Pediculus humanus corporis] gi|212517265|gb|EEB19183.1| class A rhodopsin-like G-protein coupled receptor GPR5ht2, putative [Pediculus humanus corporis]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/321 (48%), Positives = 202/321 (62%), Gaps = 15/321 (4%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI-NQQ 81
           V + +D+YWAVTN+DYIH R + RI +MI+V+W VAF+V +AP LGWKDPE+ DRI   Q
Sbjct: 166 VAIALDRYWAVTNIDYIHQRTSKRIGLMILVIWGVAFLVCIAPMLGWKDPEWEDRIFKNQ 225

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTS 141
            C+VSQD+GYQIFAT S+FYVPL VIL+LYW+I+QTARKRIRRR  Q  V     K  + 
Sbjct: 226 TCLVSQDIGYQIFATASSFYVPLFVILILYWRIFQTARKRIRRRGNQNAVGGVQLKNPSG 285

Query: 142 DNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN 201
               + F  +      +I               + VI       + TT++   ++   S 
Sbjct: 286 GGVVAEFFSY---LIVKILLGAAGGSGGMAAAVVAVIGRPLPTISETTTAFTTVS---ST 339

Query: 202 SDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKA 261
           + +  +  + N        T    + Q         V + I P K   +E+ ++KRERKA
Sbjct: 340 NTSPEKQPVGNGVEPDLPTTDYMSSYQQT-------VTYPI-PIKTRVREAADSKRERKA 391

Query: 262 AKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFS 321
           AKTLAIITGAFV+CWLPFF++A+LLPLC+TC  + Y+ SFFLWLGYFNSTLNP+IYT+FS
Sbjct: 392 AKTLAIITGAFVMCWLPFFILAILLPLCKTCDFNPYMISFFLWLGYFNSTLNPIIYTIFS 451

Query: 322 PEFRQAFKRILCGSPNRGRFR 342
           PEFR AFKR+LCG     R R
Sbjct: 452 PEFRHAFKRLLCGHKGSIRRR 472

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160213432|gb|ABX10973.1| type 1 serotonin receptor [Procambarus clarkii]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 205/324 (63%), Gaps = 51/324 (15%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ- 81
           V + +D+YWAVT VDYIH+RN  RI +MI++VW  A +VS+AP  GWKDP+++ R+N+Q 
Sbjct: 259 VAIALDRYWAVTQVDYIHSRNGTRIGIMILMVWLTAVVVSIAPLFGWKDPDFLVRVNEQK 318

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTS 141
           KC+VSQD+ YQ+FAT +TFYVPL  IL+LYWKI+Q ARKRI + +               
Sbjct: 319 KCLVSQDLAYQVFATMATFYVPLTAILILYWKIFQAARKRIHKSK--------------- 363

Query: 142 DNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN 201
                    F  +K  + KK +N     P         + NG+    T++   ++ G  +
Sbjct: 364 ---------FGGKKEAKQKKNSN----KPKAHRGGADTKPNGVTEHQTTAFTTISSGSPD 410

Query: 202 SDADRRTSINNEANTAFTITHNNGA-SQSNHNNECVQVKHKIPPT--KKEKKESLEAKRE 258
             +                  NNGA S S+H +E  +++  +P    KK KKE+LEAKRE
Sbjct: 411 KSS------------------NNGAVSVSSHISEVSKLEM-LPKEHPKKTKKETLEAKRE 451

Query: 259 RKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYT 318
           +KAAKTLAIITGAFVICWLPFF+ ALL+P+C  CY SD + S FLWLGYFNSTLNP+IYT
Sbjct: 452 KKAAKTLAIITGAFVICWLPFFVTALLMPICPACYFSDVMFSIFLWLGYFNSTLNPIIYT 511

Query: 319 VFSPEFRQAFKRILCGSPNRGRFR 342
           +FSPEFR+AFKRIL G  +  R+R
Sbjct: 512 IFSPEFREAFKRILFGRKSNQRYR 535

Source: Procambarus clarkii

Species: Procambarus clarkii

Genus: Procambarus

Family: Cambaridae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476733|gb|EFX87693.1| serotonin receptor-like protein [Daphnia pulex]

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 197/318 (61%), Gaps = 52/318 (16%)

Query: 23  VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN-QQ 81
           V +  D+YWAVTN+DYIH RN +RI  MI +VW+VA IVS+AP  GWKD E++DR+N QQ
Sbjct: 200 VAIATDRYWAVTNLDYIHNRNVSRIGTMIFLVWAVALIVSVAPLFGWKDAEFLDRVNIQQ 259

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTS 141
           +C++SQDV YQIFATC+TFYVPL VIL++YWKI+QTAR+RIR++ +         K D  
Sbjct: 260 RCLISQDVSYQIFATCATFYVPLAVILIVYWKIFQTARRRIRKQSEH-------IKEDEP 312

Query: 142 DNKTSHFIFFKKRKFFRIKKCTNVVPPSPNK----LSINVIDED-NGINNATTSSSLILA 196
             +TS            I    +    +PN+     +I + D   NG   A +SS +I+ 
Sbjct: 313 PARTS------TDDAMAIVAADDGGQHTPNQQTTAFTIEIPDSPLNGSTVALSSSPVIIK 366

Query: 197 DGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAK 256
              +   A  RT+ N                                   ++K+E+LEAK
Sbjct: 367 TPSAGPAATARTTEN---------------------------------AVRKKRETLEAK 393

Query: 257 RERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           RERKAAKTLAIITGAFV+CWLPFF+ ALL+PL       + + S FLWLGYFNSTLNP+I
Sbjct: 394 RERKAAKTLAIITGAFVVCWLPFFVCALLMPLRPDWVFDETMLSVFLWLGYFNSTLNPII 453

Query: 317 YTVFSPEFRQAFKRILCG 334
           YT+FSPEFRQAFKR+LCG
Sbjct: 454 YTIFSPEFRQAFKRLLCG 471

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
FB|FBgn0004168	834	5-HT1A "Serotonin receptor 1A"	0.576	0.236	0.423	4e-68
FB|FBgn0263116	617	5-HT1B "Serotonin receptor 1B"	0.271	0.150	0.688	4.6e-61
ZFIN|ZDB-GENE-071203-1	398	htr1aa "5-hydroxytryptamine (s	0.263	0.226	0.419	2.9e-38
UNIPROTKB|Q98998	408	htr1a "5-hydroxytryptamine rec	0.263	0.220	0.430	5.4e-38
UNIPROTKB|F1NAZ2	422	HTR1A "Uncharacterized protein	0.263	0.213	0.430	1.8e-37
MGI|MGI:96273	421	Htr1a "5-hydroxytryptamine (se	0.263	0.213	0.430	2.2e-37
UNIPROTKB|P79400	291	HTR1D "5-hydroxytryptamine rec	0.233	0.274	0.518	1e-36
UNIPROTKB|F6Q2H9	422	HTR1A "Uncharacterized protein	0.263	0.213	0.419	3.1e-36
UNIPROTKB|P08908	422	HTR1A "5-hydroxytryptamine rec	0.263	0.213	0.419	3.1e-36
UNIPROTKB|F1SKV3	422	HTR1A "Uncharacterized protein	0.263	0.213	0.419	3.1e-36

FB|FBgn0004168 5-HT1A "Serotonin receptor 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 411 (149.7 bits), Expect = 4.0e-68, Sum P(2) = 4.0e-68
 Identities = 89/210 (42%), Positives = 114/210 (54%)

Query:    23 VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82
             V + VD+YWAVTN+DYIH+R +NR+ MMI  VW+ A IVSLAPQ GWKDP+Y+ RI QQK
Sbjct:   318 VAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWTAAVIVSLAPQFGWKDPDYLQRIEQQK 377

Query:    83 CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTAXXXXXXXXXX-XNVLMAGKKPD-- 139
             CMVSQDV YQ+FATC TFYVPLLVIL LYWKIYQTA            +  +   +PD  
Sbjct:   378 CMVSQDVSYQVFATCCTFYVPLLVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGG 437

Query:   140 -TSDNKTSHXXXXX---XXXXXXXXXCTNVVPPSPNKLSINVIDEDNGINNATTSSSLIL 195
               +D K                       V  P+    ++ ++D  N  N   T      
Sbjct:   438 AATDTKLHRLRLRLGRFSTAKSKTGSAVGVSGPASGGRALGLVD-GNSTNTVNTVEDTEF 496

Query:   196 ADGHSNSDADRRTSI---NNEANTAFTITH 222
             +   SN D+  R  +   +   N   T++H
Sbjct:   497 SS--SNVDSKSRAGVEAPSTSGNQIATVSH 524

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=NAS;IDA;TAS

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=IDA;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS

GO:0001586 "Gi/o-coupled serotonin receptor activity" evidence=NAS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

FB|FBgn0263116 5-HT1B "Serotonin receptor 1B" [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
 Identities = 64/93 (68%), Positives = 72/93 (77%)

Query:    23 VIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82
             V +  D+YW VTN+DY + R   R+ +MI  VW  A IVSLAPQ GWKDP+YM RI +Q 
Sbjct:   182 VAIAADRYWTVTNIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQH 241

Query:    83 CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIY 115
             CMVSQDVGYQIFATC TFYVPLLVIL LYWKIY
Sbjct:   242 CMVSQDVGYQIFATCCTFYVPLLVILFLYWKIY 274

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=NAS;IDA;TAS

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=IDA;TAS

GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS

GO:0001586 "Gi/o-coupled serotonin receptor activity" evidence=NAS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0009649 "entrainment of circadian clock" evidence=IMP

ZFIN|ZDB-GENE-071203-1 htr1aa "5-hydroxytryptamine (serotonin) receptor 1A a" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 2.9e-38, Sum P(2) = 2.9e-38
 Identities = 39/93 (41%), Positives = 64/93 (68%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R  ++I + W + F +S+ P LGW+ PE  DR +   C +
Sbjct:   124 LDRYWAITDPIDYVNKRTPRRAAILISLTWLIGFSISIPPMLGWRKPE--DRADPDACTI 181

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             SQD GY I++T   FY+PL+++LVLY +I++ A
Sbjct:   182 SQDHGYTIYSTFGAFYIPLILMLVLYGRIFRAA 214

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0097458 "neuron part" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q98998 htr1a "5-hydroxytryptamine receptor 1A" [Xenopus laevis (taxid:8355)]

 Score = 237 (88.5 bits), Expect = 5.4e-38, Sum P(2) = 5.4e-38
 Identities = 40/93 (43%), Positives = 64/93 (68%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R  ++I + W V F +S+ P LGW+ PE  DR +   C +
Sbjct:   126 LDRYWAITDPIDYVNKRTPRRAAVLISITWIVGFSISIPPMLGWRTPE--DRSDPNACRI 183

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PL+++LVLY KI++ A
Sbjct:   184 SEDPGYTIYSTFGAFYIPLILMLVLYGKIFKAA 216

GO:0004993 "serotonin receptor activity" evidence=ISS

GO:0006260 "DNA replication" evidence=IDA

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS

GO:0008283 "cell proliferation" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

UNIPROTKB|F1NAZ2 HTR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
 Identities = 40/93 (43%), Positives = 65/93 (69%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R  ++I + W + F++S+ P LGW+ PE  DR N   C +
Sbjct:   135 LDRYWAITDPIDYVNKRTPRRAAVLISLTWLIGFLISIPPMLGWRTPE--DRSNPDACTI 192

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PLL++LVLY +I++ A
Sbjct:   193 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFKAA 225

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

MGI|MGI:96273 Htr1a "5-hydroxytryptamine (serotonin) receptor 1A" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
 Identities = 40/93 (43%), Positives = 65/93 (69%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR N  +C +
Sbjct:   132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSNPNECTI 189

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PLL++LVLY +I++ A
Sbjct:   190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA 222

GO:0001965 "G-protein alpha-subunit binding" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO;IDA

GO:0007610 "behavior" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0031117 "positive regulation of microtubule depolymerization" evidence=ISO

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043203 "axon hillock" evidence=ISO

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0051378 "serotonin binding" evidence=ISO

GO:0060259 "regulation of feeding behavior" evidence=ISO

GO:0097114 "N-methyl-D-aspartate receptor clustering" evidence=ISO

GO:0097458 "neuron part" evidence=IEA

UNIPROTKB|P79400 HTR1D "5-hydroxytryptamine receptor 1D" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 42/81 (51%), Positives = 54/81 (66%)

Query:   253 LEAKRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQ-TCYISDYLASFFLWLGYFNST 311
             + A RERKA KTL II GAF+ICW            C+ +C+I   L  FF WLGY NS 
Sbjct:   211 ISAARERKATKTLGIILGAFIICWLPFFVASLVLPICRDSCWIHPALFDFFTWLGYLNSL 270

Query:   312 LNPVIYTVFSPEFRQAFKRIL 332
             +NP+IYTVF+ EFRQAF++++
Sbjct:   271 INPIIYTVFNEEFRQAFQKVV 291

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

UNIPROTKB|F6Q2H9 HTR1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
 Identities = 39/93 (41%), Positives = 64/93 (68%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct:   132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PLL++LVLY +I++ A
Sbjct:   190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA 222

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P08908 HTR1A "5-hydroxytryptamine receptor 1A" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
 Identities = 39/93 (41%), Positives = 64/93 (68%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct:   132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PLL++LVLY +I++ A
Sbjct:   190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA 222

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007610 "behavior" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007210 "serotonin receptor signaling pathway" evidence=TAS

UNIPROTKB|F1SKV3 HTR1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
 Identities = 39/93 (41%), Positives = 64/93 (68%)

Query:    27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
             +D+YWA+T+ +DY++ R   R   +I + W + F++S+ P LGW+ PE  DR +   C +
Sbjct:   132 LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPE--DRSDPDACTI 189

Query:    86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
             S+D GY I++T   FY+PLL++LVLY +I++ A
Sbjct:   190 SKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA 222

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N298	5HT1A_PANTR	No assigned EC number	0.3343	0.8070	0.6540	yes	N/A
Q64264	5HT1A_MOUSE	No assigned EC number	0.3301	0.8128	0.6603	yes	N/A
P19327	5HT1A_RAT	No assigned EC number	0.3408	0.8157	0.6611	yes	N/A
P08908	5HT1A_HUMAN	No assigned EC number	0.3343	0.8070	0.6540	yes	N/A
Q0EAB6	5HT1A_HORSE	No assigned EC number	0.3228	0.7923	0.6421	yes	N/A
Q6XXX9	5HT1A_CANFA	No assigned EC number	0.3481	0.8011	0.6477	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	342
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-17
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-12

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 248 EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY--ISDYLASFFLWL 305
           + +    + +ERKAAK L ++   FV+CWLP+ ++ LL  LC      +        LWL
Sbjct: 180 QARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWL 239

Query: 306 GYFNSTLNPVIY 317
            Y NS LNP+IY
Sbjct: 240 AYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGW--KDPEYMDRIN--QQ 81
           +D+Y A+ + + Y   R   R  ++I+VVW +A ++SL P L    +  E  +       
Sbjct: 74  IDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLID 133

Query: 82  KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQR 129
               S    Y + +T   F +PLLVILV Y  I +T RKR R    Q 
Sbjct: 134 FPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQA 181

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG4220|consensus	503		100.0
KOG4219|consensus	423		100.0
PHA03235	409	DNA packaging protein UL33; Provisional	100.0
PHA03234	338	DNA packaging protein UL33; Provisional	100.0
PHA02834	323	chemokine receptor-like protein; Provisional	99.97
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.96
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.95
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.94
KOG2087|consensus	363		99.78
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.68
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.6
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.46
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.34
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.05
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.95
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.95
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.3
KOG4193|consensus	610		98.27
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	98.25
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	98.2
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	98.03
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	97.96
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	97.91
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	97.86
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	97.73
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	97.68
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	97.57
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.21
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.03
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	97.03
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	96.92
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	95.47
KOG4564|consensus	473		95.42
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	94.88
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	94.46
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	93.7
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	93.36
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	92.39
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	89.37
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	89.03
PF13853	144	7tm_4: Olfactory receptor	83.87

>KOG4220|consensus

Probab=100.00  E-value=2.9e-40  Score=280.40  Aligned_cols=331  Identities=24%  Similarity=0.408  Sum_probs=196.1

Q ss_pred             HhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceecc-
Q psy4354           9 VLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVS-   86 (342)
Q Consensus         9 ~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~-   86 (342)
                      -+-++...+|+++|+.|+||||+.|.+ +.|+.+.|++|+.++|++.|++++++..|.++.|.........+...|..+ 
T Consensus       108 alDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQF  187 (503)
T KOG4220|consen  108 ALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQF  187 (503)
T ss_pred             HHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEe
Confidence            466788899999999999999999999 899999999999999999999999999988888887766665567889774 


Q ss_pred             -CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc----CCCCCCCCCCccceeecccc---cccc
Q psy4354          87 -QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA----GKKPDTSDNKTSHFIFFKKR---KFFR  158 (342)
Q Consensus        87 -~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~  158 (342)
                       .+....+-..+..|.+|..+|+++|++|++..+++.+.....+....+    ......+......+.+.+..   ....
T Consensus       188 lsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~  267 (503)
T KOG4220|consen  188 LSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREP  267 (503)
T ss_pred             ecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCcccccccc
Confidence             333444455577899999999999999999999998877654433211    11111100000001000000   0000


Q ss_pred             ccccCCCCCCCCCCCCcccc------cCCCCCcCCCCCCceeccCCCCCCCCCc--c------ccCCC---------CCC
Q psy4354         159 IKKCTNVVPPSPNKLSINVI------DEDNGINNATTSSSLILADGHSNSDADR--R------TSINN---------EAN  215 (342)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~---------~~~  215 (342)
                      ......+..+.+........      ++++.......+...+..+.+.......  .      ..+..         ++.
T Consensus       268 ~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~  347 (503)
T KOG4220|consen  268 LTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQ  347 (503)
T ss_pred             CCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccccccccccccc
Confidence            00111111111111111000      0000000000000000000000000000  0      00000         000


Q ss_pred             c------cc---eeccCCCCCCCCCCc----------cccccccCC---CCCcccchhhHHHHHHhhHHHHHHHHHHHHH
Q psy4354         216 T------AF---TITHNNGASQSNHNN----------ECVQVKHKI---PPTKKEKKESLEAKRERKAAKTLAIITGAFV  273 (342)
Q Consensus       216 ~------~~---~~~~~~~~~~~~~~~----------~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~  273 (342)
                      .      ..   ........++.+++.          ..++.....   .....+++++....+|+|++|++.+|.+.|+
T Consensus       348 ~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFI  427 (503)
T KOG4220|consen  348 MLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFI  427 (503)
T ss_pred             CCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            0      00   000000000000000          000000011   1111222333344889999999999999999


Q ss_pred             HhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcCCCCCC
Q psy4354         274 ICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR  340 (342)
Q Consensus       274 ~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~~~~~  340 (342)
                      +||.||.|+.++..||+++ .+..+..+..||.|+||-+||++|++.|..||+.++++|.|+..+++
T Consensus       428 iTWtPYNImVlv~tFC~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~  493 (503)
T KOG4220|consen  428 LTWTPYNIMVLVNTFCKNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRR  493 (503)
T ss_pred             HHcccceeeeehHhhcccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccc
Confidence            9999999999999999987 77788899999999999999999999999999999999988865544

>KOG4219|consensus

Probab=100.00  E-value=1.4e-34  Score=246.50  Aligned_cols=211  Identities=22%  Similarity=0.406  Sum_probs=166.1

Q ss_pred             hhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCC--cccccCccc
Q psy4354           5 LFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPE--YMDRINQQK   82 (342)
Q Consensus         5 ~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~--~~~~~~~~~   82 (342)
                      -|..|+....+.+|+++++|||+|||+||.||.. .+.++|...++|+++|++++++++|..+..+..+  ..++.....
T Consensus       109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~-~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~  187 (423)
T KOG4219|consen  109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ-PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVV  187 (423)
T ss_pred             eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcc-cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEE
Confidence            3567888899999999999999999999999753 4499999999999999999999996554333221  122222344


Q ss_pred             eecc---------CC----chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCcccee
Q psy4354          83 CMVS---------QD----VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFI  149 (342)
Q Consensus        83 C~~~---------~~----~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      |...         ..    +.|.....++.|++|++++.+.|.+|.+.+|..+....                       
T Consensus       188 ~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd-----------------------  244 (423)
T KOG4219|consen  188 CVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGD-----------------------  244 (423)
T ss_pred             EEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccc-----------------------
Confidence            4331         11    23778888899999999999999999999998431000                       


Q ss_pred             eccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCC
Q psy4354         150 FFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQS  229 (342)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (423)
T KOG4219|consen  245 --------------------------------------------------------------------------------  244 (423)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCC---CCchhHHHHHHHHHH
Q psy4354         230 NHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQT---CYISDYLASFFLWLG  306 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~---~~~~~~~~~~~~~l~  306 (342)
                                      ..+ +...+.+..+|+.||+++|++.|.+||+||.+..++....++   ......++....||+
T Consensus       245 ----------------~~d-~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLa  307 (423)
T KOG4219|consen  245 ----------------QQD-RKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLA  307 (423)
T ss_pred             ----------------hhc-hhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                            011 223366788999999999999999999999999998766532   235667888889999


Q ss_pred             hhcccccchhhhccChhHHHHHHHHHhcCC
Q psy4354         307 YFNSTLNPVIYTVFSPEFRQAFKRILCGSP  336 (342)
Q Consensus       307 ~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~  336 (342)
                      ..|+|.||+||+++|++||.++++.|+|..
T Consensus       308 MSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  308 MSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            999999999999999999999999998773

>PHA03235 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=3.1e-32  Score=245.87  Aligned_cols=200  Identities=14%  Similarity=0.267  Sum_probs=152.4

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccC---CCcc-cccC
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM-DRIN   79 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~---~~~~-~~~~   79 (342)
                      |-+.+++...+..+|++++++||+|||+||++|.|....+++++.++++++|++++++++|+.+....   ..+. ...+
T Consensus       105 Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~  184 (409)
T PHA03235        105 CKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPG  184 (409)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCC
Confidence            44567888889999999999999999999999766666778899999999999999999986543211   1111 1112


Q ss_pred             ccceeccCC--c------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeec
Q psy4354          80 QQKCMVSQD--V------GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFF  151 (342)
Q Consensus        80 ~~~C~~~~~--~------~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
                      ...|.....  .      .|.++.+++.|++|+++|++||.+|++++|++.+                            
T Consensus       185 ~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~----------------------------  236 (409)
T PHA03235        185 YETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY----------------------------  236 (409)
T ss_pred             cceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------
Confidence            456865322  1      2445556677999999999999999999987421                            


Q ss_pred             cccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCC
Q psy4354         152 KKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNH  231 (342)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (409)
T PHA03235        237 --------------------------------------------------------------------------------  236 (409)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcC-----CC---CchhHHHHHHH
Q psy4354         232 NNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ-----TC---YISDYLASFFL  303 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~-----~~---~~~~~~~~~~~  303 (342)
                                              ++++|+.+++++++++|++||+||.++.++..+.+     +.   .....+..+..
T Consensus       237 ------------------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~  292 (409)
T PHA03235        237 ------------------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSR  292 (409)
T ss_pred             ------------------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHH
Confidence                                    12346788999999999999999999888754421     11   12334567888


Q ss_pred             HHHhhcccccchhhhccChhHHHHHHHHHhcC
Q psy4354         304 WLGYFNSTLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       304 ~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      +|+++|||+||+||++++++||+++++.++++
T Consensus       293 ~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        293 LVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE  324 (409)
T ss_pred             HHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999654

>PHA03234 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=8.9e-32  Score=237.76  Aligned_cols=194  Identities=14%  Similarity=0.188  Sum_probs=141.7

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +-+.+++...+.++|++++++||+|||+||++|...+ .++++....++++|+++++.++|+++.........  +...|
T Consensus       105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~-~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~--~~~~C  181 (338)
T PHA03234        105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKND-KKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKG--NYGKC  181 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhh-hhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCC--CCCcC
Confidence            3456888999999999999999999999999954333 33445556677779999999997765443221111  12468


Q ss_pred             eccCC--chhHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          84 MVSQD--VGYQIF------ATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        84 ~~~~~--~~~~~~------~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                      ...+.  ..|..+      ..++.|++|+++|++||.+|.+++++..                                 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~---------------------------------  228 (338)
T PHA03234        182 NIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT---------------------------------  228 (338)
T ss_pred             cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------------------
Confidence            65432  222221      2233468999999999999998887521                                 


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (338)
T PHA03234        229 --------------------------------------------------------------------------------  228 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcC-----CCC---chhHHHHHHHHHHh
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ-----TCY---ISDYLASFFLWLGY  307 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~-----~~~---~~~~~~~~~~~l~~  307 (342)
                                         .++++|++|++++++++|++||+||.++.++..+..     .+.   .....+.++.+|++
T Consensus       229 -------------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~  289 (338)
T PHA03234        229 -------------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPE  289 (338)
T ss_pred             -------------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHH
Confidence                               123578999999999999999999999887654321     111   12344667889999


Q ss_pred             hcccccchhhhccChhHHHHHHHHH
Q psy4354         308 FNSTLNPVIYTVFSPEFRQAFKRIL  332 (342)
Q Consensus       308 ~ns~vNPiiY~~~n~~fR~~~~~ll  332 (342)
                      +|||+||+||++++++||+++++++
T Consensus       290 ~nsclNPiIY~f~~~~FR~~~~~~~  314 (338)
T PHA03234        290 IHCFSNPLVYAFTGGDFRLRFTACF  314 (338)
T ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999988776

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=236.73  Aligned_cols=199  Identities=18%  Similarity=0.369  Sum_probs=147.8

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +-+.+++...+..+|++++++||+|||++|++|......+.+++.++++++|+++++.++|+++++..... .  +...|
T Consensus        98 C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~-~--~~~~C  174 (323)
T PHA02834         98 CKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT-D--NLKQC  174 (323)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccC-C--CceEE
Confidence            44566777788889999999999999999999543344556778888899999999999988776543211 1  13468


Q ss_pred             eccCC-c--h----hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccc
Q psy4354          84 MVSQD-V--G----YQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKF  156 (342)
Q Consensus        84 ~~~~~-~--~----~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
                      ..... .  .    +.....++.|++|+++|+++|.+|++++|++.+                                 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~---------------------------------  221 (323)
T PHA02834        175 IFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN---------------------------------  221 (323)
T ss_pred             eccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------------------
Confidence            64211 1  1    122334678899999999999999999876310                                 


Q ss_pred             ccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc
Q psy4354         157 FRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV  236 (342)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (323)
T PHA02834        222 --------------------------------------------------------------------------------  221 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC------Cc---hhHHHHHHHHHHh
Q psy4354         237 QVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC------YI---SDYLASFFLWLGY  307 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~------~~---~~~~~~~~~~l~~  307 (342)
                                         ++++|.+|++++++++|++||+||.+..++..+.+..      ..   ......+..++++
T Consensus       222 -------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  282 (323)
T PHA02834        222 -------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISF  282 (323)
T ss_pred             -------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Confidence                               1135778999999999999999999988876553211      00   1112356778999


Q ss_pred             hcccccchhhhccChhHHHHHHHHHhcCCC
Q psy4354         308 FNSTLNPVIYTVFSPEFRQAFKRILCGSPN  337 (342)
Q Consensus       308 ~ns~vNPiiY~~~n~~fR~~~~~ll~~~~~  337 (342)
                      +||++||+||+++|++||+++++++|+.++
T Consensus       283 ~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~  312 (323)
T PHA02834        283 VHCCVNPIIYAFVGKNFKKVFKNMFCRTNN  312 (323)
T ss_pred             hhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999975543

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.96  E-value=2.7e-29  Score=227.81  Aligned_cols=201  Identities=17%  Similarity=0.337  Sum_probs=150.9

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCc-------c
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEY-------M   75 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~-------~   75 (342)
                      +-+.+++...+.++|++++++|++|||+||+| .++....+++.+.++++++|+++++.++|+++.++....       .
T Consensus       168 Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~  247 (417)
T PHA02638        168 CKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSN  247 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCC
Confidence            34567778888999999999999999999999 555555677778889999999999999998876543211       1


Q ss_pred             cccCccceeccCCc----------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCc
Q psy4354          76 DRINQQKCMVSQDV----------GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKT  145 (342)
Q Consensus        76 ~~~~~~~C~~~~~~----------~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      .......|......          .+.+...++.+++|++++++||.+|++++++..+                      
T Consensus       248 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~----------------------  305 (417)
T PHA02638        248 ETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK----------------------  305 (417)
T ss_pred             CCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------
Confidence            11113467653211          1223334667899999999999999999876310                      


Q ss_pred             cceeeccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCC
Q psy4354         146 SHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNG  225 (342)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (342)
                                                                                                      
T Consensus       306 --------------------------------------------------------------------------------  305 (417)
T PHA02638        306 --------------------------------------------------------------------------------  305 (417)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCC-----------CC-
Q psy4354         226 ASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQT-----------CY-  293 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~-----------~~-  293 (342)
                                                    ++++|++|++++++++|++||+||.++.++..+...           +. 
T Consensus       306 ------------------------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~  355 (417)
T PHA02638        306 ------------------------------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGF  355 (417)
T ss_pred             ------------------------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccH
Confidence                                          124577899999999999999999999888655311           11 


Q ss_pred             -chhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcCC
Q psy4354         294 -ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSP  336 (342)
Q Consensus       294 -~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~  336 (342)
                       ..+....++.+++++|+|+||++|++.+++||+++++++++..
T Consensus       356 ~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~  399 (417)
T PHA02638        356 IKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence             1123455677899999999999999999999999999996554

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=212.39  Aligned_cols=198  Identities=21%  Similarity=0.292  Sum_probs=150.7

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +-+.+++...+..+|++++++||+|||++|++ .+|....+.+++.++++++|+++++.++|+++.+......   +...
T Consensus       111 C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~---~~~~  187 (335)
T PHA03087        111 CKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH---ETLI  187 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC---CCce
Confidence            44567788888999999999999999999999 6777788999999999999999999999776665432221   2445


Q ss_pred             eeccCC---chh----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          83 CMVSQD---VGY----QIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        83 C~~~~~---~~~----~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                      |...++   ..+    .+...++.+++|+++++++|.+|++.++++.                                 
T Consensus       188 C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~---------------------------------  234 (335)
T PHA03087        188 CCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN---------------------------------  234 (335)
T ss_pred             EEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------
Confidence            655432   111    1223456789999999999999998887632                                 


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (335)
T PHA03087        235 --------------------------------------------------------------------------------  234 (335)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhc-----CCCC---chhHHHHHHHHHHh
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLC-----QTCY---ISDYLASFFLWLGY  307 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~-----~~~~---~~~~~~~~~~~l~~  307 (342)
                                        ..++++|++|++++++++|++||+|+.+..++..+.     +...   .......++.++..
T Consensus       235 ------------------~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  296 (335)
T PHA03087        235 ------------------KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISL  296 (335)
T ss_pred             ------------------cchhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence                              013457889999999999999999999887765331     1111   12233456677899


Q ss_pred             hcccccchhhhccChhHHHHHHHHHhcC
Q psy4354         308 FNSTLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       308 ~ns~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      +|+++||+||++++++||++++++++..
T Consensus       297 ~ns~~NPiIY~~~~~~fr~~~~~~~~~~  324 (335)
T PHA03087        297 SHCCINPLIYAFVSEFFNKHKKKSLKLM  324 (335)
T ss_pred             HHHhhhhhHHHHcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998544

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.94  E-value=2.4e-26  Score=196.61  Aligned_cols=195  Identities=30%  Similarity=0.551  Sum_probs=160.5

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +-+.+++..++..+|.+++++|++|||++|++ .+|+...+++++..+++++|++++++++|+.++.+....... +...
T Consensus        57 C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~  135 (257)
T PF00001_consen   57 CRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-SQSF  135 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-CCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            44667888899999999999999999999999 788888899999999999999999999988877554332221 1567


Q ss_pred             eeccCCc----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccccc
Q psy4354          83 CMVSQDV----GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFR  158 (342)
Q Consensus        83 C~~~~~~----~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      |......    .+..+..++.+++|+++++++|.+|++.+|++.++.....                             
T Consensus       136 C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------------  186 (257)
T PF00001_consen  136 CFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQS-----------------------------  186 (257)
T ss_dssp             EEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHT-----------------------------
T ss_pred             ccccccccccccccccccccccccceeeeeeeccccccccccccccccccc-----------------------------
Confidence            8886443    4777888889999999999999999999999876544310                             


Q ss_pred             ccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccccc
Q psy4354         159 IKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV  238 (342)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (257)
T PF00001_consen  187 --------------------------------------------------------------------------------  186 (257)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCC-chhHHHHHHHHHHhhcccccchhh
Q psy4354         239 KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY-ISDYLASFFLWLGYFNSTLNPVIY  317 (342)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~vNPiiY  317 (342)
                               ....+.+.++|+|+++++++++++|++||+|+.+..++....+... .......++.++.++|+++||++|
T Consensus       187 ---------~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  187 ---------SSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             ---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------ccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence                     0223346688999999999999999999999999999887776543 467788889999999999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.78  E-value=2.3e-20  Score=158.18  Aligned_cols=199  Identities=19%  Similarity=0.357  Sum_probs=151.6

Q ss_pred             hhhhHHHhhHHHHHhHHHHhhheeeceeEEEeeccc-ccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCcc
Q psy4354           3 QLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDY-IHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ   81 (342)
Q Consensus         3 ~~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y-~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~   81 (342)
                      ++=+.||+..++.-.|+++++.+++||+++|++|.+ .+....|.+..++...|+.+++.++.|+++.+.+..     ..
T Consensus       103 gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~-----~~  177 (363)
T KOG2087|consen  103 GCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGA-----SS  177 (363)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcc-----cc
Confidence            345689999999999999999999999999999444 444555559999999999999999999998665432     46


Q ss_pred             ceecc-----CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccc
Q psy4354          82 KCMVS-----QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKF  156 (342)
Q Consensus        82 ~C~~~-----~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
                      .|.+-     .+..|.+..++.+=.+.+++|+++|++|+..+++-....                               
T Consensus       178 vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~-------------------------------  226 (363)
T KOG2087|consen  178 VCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA-------------------------------  226 (363)
T ss_pred             eeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc-------------------------------
Confidence            78662     233355566666678899999999999999998711000                               


Q ss_pred             ccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc
Q psy4354         157 FRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV  236 (342)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (363)
T KOG2087|consen  227 --------------------------------------------------------------------------------  226 (363)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchh
Q psy4354         237 QVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVI  316 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPii  316 (342)
                                        ......++|-++.+++.-.+||.|..++.+...+..+.........+..++.-+|+|+||++
T Consensus       227 ------------------~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~L  288 (363)
T KOG2087|consen  227 ------------------TLISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFL  288 (363)
T ss_pred             ------------------ccchhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchh
Confidence                              00114677778889999999999988888877666554333333334455677999999999


Q ss_pred             hhccChhHHHHHHHHHhcC
Q psy4354         317 YTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       317 Y~~~n~~fR~~~~~ll~~~  335 (342)
                      |++.++.||+.++.++.+.
T Consensus       289 Ya~fT~~fk~d~~~l~~k~  307 (363)
T KOG2087|consen  289 YAFFTPVFKEDLFLLLSKV  307 (363)
T ss_pred             HHHcCHHHHHHHHHHHhhc
Confidence            9999999999999998554

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.68  E-value=2.6e-16  Score=139.28  Aligned_cols=209  Identities=20%  Similarity=0.251  Sum_probs=154.8

Q ss_pred             hhHHHhhHHHHHhHHHHhhheeeceeEEEeecccc---cccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcc-cccCc
Q psy4354           5 LFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYI---HTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYM-DRINQ   80 (342)
Q Consensus         5 ~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~---~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~-~~~~~   80 (342)
                      ++...+...+...|+|..++||+.||++|.+|...   ...+.+.+..++.++++++++..++.++.+...+.. ...+.
T Consensus        79 ~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~  158 (318)
T PF10324_consen   79 LIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPP  158 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCC
Confidence            45567888889999999999999999999985322   334677788888999999999998766555433222 12224


Q ss_pred             cceec---c-CC--------c-----------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCC
Q psy4354          81 QKCMV---S-QD--------V-----------GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKK  137 (342)
Q Consensus        81 ~~C~~---~-~~--------~-----------~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~  137 (342)
                      ..|..   . ..        .           .+.....++.-++|.++..++...+.+.+|+..+++.....       
T Consensus       159 ~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~-------  231 (318)
T PF10324_consen  159 PNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSS-------  231 (318)
T ss_pred             CceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccc-------
Confidence            55751   0 00        0           11122223446899999999999999999997776665110       


Q ss_pred             CCCCCCCccceeeccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCcc
Q psy4354         138 PDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTA  217 (342)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (342)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (318)
T PF10324_consen  232 --------------------------------------------------------------------------------  231 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeccCCCCCCCCCCccccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC----C
Q psy4354         218 FTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC----Y  293 (342)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~----~  293 (342)
                                                        + ..+++.+.+++++.+++.|+++-+|+.+..++..+..+.    .
T Consensus       232 ----------------------------------~-~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~  276 (318)
T PF10324_consen  232 ----------------------------------S-KSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIF  276 (318)
T ss_pred             ----------------------------------c-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence                                              0 024567899999999999999999999999997764321    2


Q ss_pred             chhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcC
Q psy4354         294 ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       294 ~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      .......+...|..+|+..|++||.+++.+||++++++|+||
T Consensus       277 ~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k  318 (318)
T PF10324_consen  277 IIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK  318 (318)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence            345566677889999999999999999999999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.60  E-value=2e-14  Score=122.57  Aligned_cols=193  Identities=13%  Similarity=0.211  Sum_probs=134.7

Q ss_pred             hhhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCcc
Q psy4354           3 QLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ   81 (342)
Q Consensus         3 ~~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~   81 (342)
                      +++...+...++..++...+++|++||++||+. .+|+...+.+...++.....+.+....+   +++-..   ++....
T Consensus        60 ~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~---~~~~~~---~~~~~~  133 (257)
T PF10320_consen   60 ECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTV---IGFLYR---DDETIV  133 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHh---heeEec---CCcccc
Confidence            356666777888899999999999999999999 6887777777555555555555444432   222221   111367


Q ss_pred             ceeccC---CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccccc
Q psy4354          82 KCMVSQ---DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFR  158 (342)
Q Consensus        82 ~C~~~~---~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      .|.+..   ...+.++... ..++ -+++++.|...+..++++.++                                  
T Consensus       134 ~C~pp~a~~~~~~~~~~~~-~~~i-nv~tvivY~i~~~~~~~k~~~----------------------------------  177 (257)
T PF10320_consen  134 ICNPPLAFHGTASQIWSYS-NIII-NVITVIVYIITIIIFKRKSRS----------------------------------  177 (257)
T ss_pred             cCCCccccCccHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHccc----------------------------------
Confidence            898853   3344444333 2233 355677888888877774321                                  


Q ss_pred             ccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccccc
Q psy4354         159 IKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV  238 (342)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (257)
T PF10320_consen  178 --------------------------------------------------------------------------------  177 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCC-CCchhHHHHHHHHHHhhcccccchhh
Q psy4354         239 KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQT-CYISDYLASFFLWLGYFNSTLNPVIY  317 (342)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~vNPiiY  317 (342)
                                     ..+.++|+.|.+.+.+++|+++|.=..+...+....+. ......+.....++..+|.+.|.+||
T Consensus       178 ---------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~  242 (257)
T PF10320_consen  178 ---------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVY  242 (257)
T ss_pred             ---------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEE
Confidence                           12457899999999999999999887766666544433 22334466667789999999999999


Q ss_pred             hccChhHHHHHHHHH
Q psy4354         318 TVFSPEFRQAFKRIL  332 (342)
Q Consensus       318 ~~~n~~fR~~~~~ll  332 (342)
                      .++|+|||++++++|
T Consensus       243 ~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  243 YWRSSEYRKAFRELF  257 (257)
T ss_pred             EEcCHHHHHHHHHhC
Confidence            999999999999975

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.46  E-value=8.6e-13  Score=114.08  Aligned_cols=198  Identities=20%  Similarity=0.292  Sum_probs=134.6

Q ss_pred             HHHHHhHHHHhhheeeceeEEEeecc--cccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceeccCC-
Q psy4354          12 HYNVDMLGYSTVIMFVDKYWAVTNVD--YIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQD-   88 (342)
Q Consensus        12 ~~~~~~S~~~l~~IaidRY~aI~~~~--y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~-   88 (342)
                      ++...+.....+.+|++||.||++|.  +.+..++.+...++++-|+.++++++ +++......+....+ ..-..+.+ 
T Consensus        83 y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~-~~~~~~~~~f~~~~~-~~~~~d~~~  160 (283)
T PF10323_consen   83 YYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISL-PFFFDTDFYFDNEEN-MSLFVDPEF  160 (283)
T ss_pred             HHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhhee-eeeccCceeeecccc-eeeecCHHH
Confidence            44555667789999999999999954  66677888999999999999999999 455555555544322 11111111 


Q ss_pred             chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccccccccCCCCCC
Q psy4354          89 VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPP  168 (342)
Q Consensus        89 ~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      .............+-++..+++|+.++..+|++.+...                                          
T Consensus       161 ~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s------------------------------------------  198 (283)
T PF10323_consen  161 IQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKS------------------------------------------  198 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------------------------------------------
Confidence            11111222344455667889999999999998764111                                          


Q ss_pred             CCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccccccccCCCCCccc
Q psy4354         169 SPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKE  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (283)
T PF10323_consen  199 --------------------------------------------------------------------------------  198 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHH
Q psy4354         249 KKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAF  328 (342)
Q Consensus       249 ~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~  328 (342)
                      ++.++..++|.+.+.+.++.++++++..+=+. ........++......+..+.-.+..+.|.+||+.-.+.|+++|+++
T Consensus       199 ~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~  277 (283)
T PF10323_consen  199 KSSSRSRRREIRLAIQVFILFCAFFVILVYYI-FSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQV  277 (283)
T ss_pred             HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHH
Confidence            11223567899999998888877666554443 33333343333223333346667788899999999999999999999


Q ss_pred             HHHHhc
Q psy4354         329 KRILCG  334 (342)
Q Consensus       329 ~~ll~~  334 (342)
                      ++.++|
T Consensus       278 ~~~~~~  283 (283)
T PF10323_consen  278 RRMLKC  283 (283)
T ss_pred             HHHcCC
Confidence            999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.34  E-value=4.1e-11  Score=103.65  Aligned_cols=198  Identities=13%  Similarity=0.212  Sum_probs=137.3

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccC-CCcccc----
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD-PEYMDR----   77 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~-~~~~~~----   77 (342)
                      ..+.+++...+...+.++-++||++|++||+. .+|.+..+.+.+.++++++|++++....++.+.-+. ..++++    
T Consensus        67 s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~  146 (274)
T PF10328_consen   67 SIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSW  146 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeee
Confidence            45567888888889999999999999999999 677888899999999999999999777655542221 111111    


Q ss_pred             --cCccceeccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          78 --INQQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        78 --~~~~~C~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                        .+...|..     +..+.......+-.+++.+++..++.++++.+++...                            
T Consensus       147 ~~~~~~~C~~-----~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~----------------------------  193 (274)
T PF10328_consen  147 SYPTDPPCGN-----YSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISV----------------------------  193 (274)
T ss_pred             ecCCCCccch-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----------------------------
Confidence              01224433     2222223333444567888999999999987665511                            


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (274)
T PF10328_consen  194 --------------------------------------------------------------------------------  193 (274)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHH-HHHHhhcccccc
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFF-LWLGYFNSTLNP  314 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~ns~vNP  314 (342)
                                 .+...++++++|.+..+-.++-.+.|++.++=+.+..-+   .+    ..+...+. ...-.+..++|+
T Consensus       194 -----------~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~----~~~~~F~~~t~~w~~~h~~DG  255 (274)
T PF10328_consen  194 -----------SSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SS----NRWWQFFCTTFSWVLVHALDG  255 (274)
T ss_pred             -----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc----ccHHHHHHHHHHHHHHHHhcc
Confidence                       111233366789999999999999999999887766443   22    13333333 333445677899


Q ss_pred             hhhhccChhHHHHHHHHH
Q psy4354         315 VIYTVFSPEFRQAFKRIL  332 (342)
Q Consensus       315 iiY~~~n~~fR~~~~~ll  332 (342)
                      +|+.+.|+|+|+.+++..
T Consensus       256 ~i~l~fN~~~r~~~~~~~  273 (274)
T PF10328_consen  256 LIMLIFNSEIRRKIRKKK  273 (274)
T ss_pred             eeEeEEcHHHHHHHHhcc
Confidence            999999999999998754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.05  E-value=2.1e-08  Score=87.58  Aligned_cols=206  Identities=14%  Similarity=0.107  Sum_probs=132.3

Q ss_pred             HhhHHHHHhHHHHhhheeeceeEEEeecccccc-cchhH----HHHHHHHHHHHHHHHHHHhHhcccCC-CcccccCccc
Q psy4354           9 VLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHT-RNANR----IIMMIVVVWSVAFIVSLAPQLGWKDP-EYMDRINQQK   82 (342)
Q Consensus         9 ~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~-~t~r~----~~~~i~~~W~~s~~~~~p~~~~~~~~-~~~~~~~~~~   82 (342)
                      ++..++...|.|..+.+++-=++-|+...++-. .=|+|    +..++.++++++++..++....+... ..........
T Consensus        87 ~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N  166 (303)
T PF05296_consen   87 FLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRN  166 (303)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCc
Confidence            445566777899999999999999998323221 11222    33566777777773333222223221 1000011111


Q ss_pred             eec--c-CCc--hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccc
Q psy4354          83 CMV--S-QDV--GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFF  157 (342)
Q Consensus        83 C~~--~-~~~--~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
                      +..  . ...  .+......+..++|+++++++-..+...++||.|+++.....                          
T Consensus       167 ~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g--------------------------  220 (303)
T PF05296_consen  167 STSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATG--------------------------  220 (303)
T ss_pred             ceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCC--------------------------
Confidence            111  1 111  223333347789999999999999999999999998872110                          


Q ss_pred             cccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccccc
Q psy4354         158 RIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQ  237 (342)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (342)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (303)
T PF05296_consen  221 --------------------------------------------------------------------------------  220 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhh
Q psy4354         238 VKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIY  317 (342)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY  317 (342)
                                  .+..+.+.+.|++|+++...+.|+++++-..+..+ ....++   ......+...+.++.+...|++-
T Consensus       221 ------------~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~yps~hs~iL  284 (303)
T PF05296_consen  221 ------------FRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFL-SFFFPE---NSIWFWVCEIIIALYPSGHSIIL  284 (303)
T ss_pred             ------------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc---ccHHHHHHHHHHHHHHHHHHHHH
Confidence                        00013478999999999988888887766443222 222222   24455677788999999999999


Q ss_pred             hccChhHHHHHHHHHhcCC
Q psy4354         318 TVFSPEFRQAFKRILCGSP  336 (342)
Q Consensus       318 ~~~n~~fR~~~~~ll~~~~  336 (342)
                      .+-|+++|++++++++|.|
T Consensus       285 Ilgn~KLr~~~~~il~~~k  303 (303)
T PF05296_consen  285 ILGNPKLRQALLKILWCLK  303 (303)
T ss_pred             hcCchHHHHHHHHHHhhcC
Confidence            9999999999999999875

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.95  E-value=2.1e-07  Score=80.59  Aligned_cols=70  Identities=11%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcCCC
Q psy4354         265 LAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPN  337 (342)
Q Consensus       265 l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~~  337 (342)
                      +..-.++|++||+|-.|..+...+...   +.+...+-..+..+...+|.++|++.|+..++.+...+++.+.
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~~---~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~  273 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGKN---PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFT  273 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence            556889999999999999998876432   3444444456777788999999999999988888877755543

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.95  E-value=4e-09  Score=91.66  Aligned_cols=80  Identities=16%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHh
Q psy4354         254 EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILC  333 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~  333 (342)
                      ..+.+++...-..++++.+.+.++=|....++       ..+.++..+....--+++..+|+||..+|+..|++++++++
T Consensus       234 ~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~  306 (313)
T PF10321_consen  234 LSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF-------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG  306 (313)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence            34667888888888888888876665544432       13577778888888899999999999999999999999999


Q ss_pred             cCCCCCC
Q psy4354         334 GSPNRGR  340 (342)
Q Consensus       334 ~~~~~~~  340 (342)
                      .++.++|
T Consensus       307 ~k~~r~~  313 (313)
T PF10321_consen  307 PKKIRKK  313 (313)
T ss_pred             cccccCC
Confidence            8776654

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.30  E-value=4.1e-06  Score=72.56  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             HHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceecc
Q psy4354           8 GVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVS   86 (342)
Q Consensus         8 ~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~   86 (342)
                      .++.+.+..+...+...|+++|+-+|.. .+|.+..+ |....+++++.++++....+.+..-....+.++.........
T Consensus        85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~-~~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (275)
T PF02118_consen   85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWK-RYYWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDT  163 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH-hhhhhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEec
Confidence            4567778888899999999999999999 55555555 444556666677776655433332222222222111111111


Q ss_pred             CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4354          87 QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRI  122 (342)
Q Consensus        87 ~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~  122 (342)
                      .+...........+++-+++.++++....+++++..
T Consensus       164 ~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~  199 (275)
T PF02118_consen  164 VSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS  199 (275)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            111112222233344445566667777777776543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>KOG4193|consensus

Probab=98.27  E-value=1.6e-05  Score=75.04  Aligned_cols=201  Identities=13%  Similarity=0.182  Sum_probs=128.7

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +...+++.+++..+..+=+.++++.=|+.++.  +......++.....+..|+.++++...........+. .......|
T Consensus       386 C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~--vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-~~~~~~~C  462 (610)
T KOG4193|consen  386 CIAAAILLHFFFLAAFFWMLLEGFHLYLLLVE--VFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-QYGTPRVC  462 (610)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-ccccCCce
Confidence            45667777888888888888899988885554  3444555555666569999998877744433332211 11123448


Q ss_pred             eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccccccccC
Q psy4354          84 MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCT  163 (342)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
                      ....+..+.+.     |+.|+.+++.+++.++..+-++..++......                                
T Consensus       463 Wl~~~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~--------------------------------  505 (610)
T KOG4193|consen  463 WLDTQNGFIWS-----FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP--------------------------------  505 (610)
T ss_pred             EEecCCceEEE-----EehHHHHHHHHHHHHHHHHHHHHhhcccccCc--------------------------------
Confidence            88655443333     78899999999977776665554433331100                                


Q ss_pred             CCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccccccccCCC
Q psy4354         164 NVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIP  243 (342)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
                                                                                                      
T Consensus       506 --------------------------------------------------------------------------------  505 (610)
T KOG4193|consen  506 --------------------------------------------------------------------------------  505 (610)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChh
Q psy4354         244 PTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPE  323 (342)
Q Consensus       244 ~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~  323 (342)
                              ..++....+..+..++..+++-+.|.=-+..+     .++  ....+.+++.++-.+....=.++|++++++
T Consensus       506 --------~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~-----~~~--~~~v~~YlFti~NalQG~fIFi~~cll~~k  570 (610)
T KOG4193|consen  506 --------IASKLENISLIRSALALLFLLGLTWIFGIFSW-----LPG--TSVVFAYLFTIFNALQGVFIFIFHCLLRKK  570 (610)
T ss_pred             --------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc--cchHHHHHHHHHHHhhhhHhhHhhhhhhHH
Confidence                    00112222778888888889999987533221     121  234455566666666667778999999999


Q ss_pred             HHHHHHHHHhcCCCCC
Q psy4354         324 FRQAFKRILCGSPNRG  339 (342)
Q Consensus       324 fR~~~~~ll~~~~~~~  339 (342)
                      .|++.++.+||.+.+.
T Consensus       571 vr~~~~k~~~~~~~~~  586 (610)
T KOG4193|consen  571 VRKEYRKWLCCGRGDS  586 (610)
T ss_pred             HHHHHHHHhcccCCCC
Confidence            9999999999766543

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.25  E-value=9e-05  Score=64.72  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=61.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHH
Q psy4354         254 EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKR  330 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~  330 (342)
                      .++.+++.+|.+.+=.++=+++..|.....++..+.+.  .......+...+..+.+.+||+++...=+.||++++|
T Consensus       218 tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  218 TKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY--EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            44678889999999999999999988877777666553  3556666777788899999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.20  E-value=9.9e-05  Score=65.40  Aligned_cols=60  Identities=8%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             chhhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHH
Q psy4354           2 IQLLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVS   62 (342)
Q Consensus         2 ~~~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~   62 (342)
                      ..+++.-....++...+.++.++|.+||++|-++ -.|++. ++.-..+++.+-|+++++..
T Consensus        94 ~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~  154 (324)
T PF10292_consen   94 YRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLIL  154 (324)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHH
Confidence            3567778888899999999999999999999999 777654 33444455555566655543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.03  E-value=0.00029  Score=61.90  Aligned_cols=78  Identities=10%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHH-hhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHH
Q psy4354         254 EAKRERKAAKTLAIITGAFVI-CWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL  332 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~~f~~-cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll  332 (342)
                      ..+.++|..+.+.+=+++.++ .-.|.....+...+..   .......+...+...+..+.-++..+.++.||+.+++++
T Consensus       224 T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~---~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~  300 (302)
T PF10318_consen  224 TRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY---YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLF  300 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHh
Confidence            446677888777665555444 4468665555443332   224455677788889999999999999999999999999


Q ss_pred             hc
Q psy4354         333 CG  334 (342)
Q Consensus       333 ~~  334 (342)
                      ||
T Consensus       301 ~~  302 (302)
T PF10318_consen  301 RC  302 (302)
T ss_pred             cC
Confidence            87

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=97.96  E-value=0.001  Score=55.39  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=76.3

Q ss_pred             hHHHhhHHHHHhHHHHhhheeeceeEEEeeccc-ccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCccc--ccCccc
Q psy4354           6 FTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDY-IHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMD--RINQQK   82 (342)
Q Consensus         6 ~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y-~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~--~~~~~~   82 (342)
                      +..++-.++.++-.++-..||+.|....-..++ .+.....-..+.+..+|++++..-....-.--.+.|..  ......
T Consensus        92 ~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~  171 (305)
T PF04789_consen   92 FMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLN  171 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEE
Confidence            456667778888889999999999987776222 23445667889999999999987663332111222222  222456


Q ss_pred             eecc-------CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy4354          83 CMVS-------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKR  121 (342)
Q Consensus        83 C~~~-------~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~  121 (342)
                      |...       ......+.-.++-+.+|+ +++++|+.|..++-..
T Consensus       172 C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi-~Il~iYiAIIiKI~~M  216 (305)
T PF04789_consen  172 CETCNSVVDISPPRGIQIIEIILQFGIPI-FILVIYIAIIIKIIKM  216 (305)
T ss_pred             cCCCCeeEeeCCCCchhHHHHHHHHhHHH-HHHHHHHHHHHHHHHH
Confidence            6553       224456777788889995 7778888888776643

>PF03125 Sre: C

Probab=97.91  E-value=0.00057  Score=61.63  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHH
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSL   63 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~   63 (342)
                      .++.+++.....+...+.+.++++||.+|-.+ -.|+++....-..+++.+.-++++..+.
T Consensus       123 l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~~~s~  183 (365)
T PF03125_consen  123 LFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSIIFSY  183 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence            46677888777788889999999999999999 7787664333334444444445555543

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=97.86  E-value=0.00074  Score=58.96  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             HHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceec
Q psy4354           7 TGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV   85 (342)
Q Consensus         7 ~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~   85 (342)
                      ...+++ +..++.|=+.+.|+|=|+.+.+ .-..      ...+==..+|+++.+++.--+.....    ++  ...|..
T Consensus       120 s~WIq~-fYsAtfwWtfcYAVDv~Lv~~~~ag~~------~~~lYH~~aWgl~~lL~~~Gl~~Ly~----Ps--~~~Ce~  186 (405)
T PF02101_consen  120 SMWIQL-FYSATFWWTFCYAVDVYLVIRRSAGRS------TIWLYHMMAWGLPALLCAEGLAMLYY----PS--ISRCES  186 (405)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhheeeccCCCc------chhHHHHHHHHHHHHHHHhccceeec----CC--HHhhhh
Confidence            344443 4555555566679999999987 3211      12233456798888877633333322    11  335754


Q ss_pred             cCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy4354          86 SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA  118 (342)
Q Consensus        86 ~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~v  118 (342)
                      ..+..  +...+. .++|++++++.+=.+|++.
T Consensus       187 ~l~~a--lphYvt-tY~PlllVlvaNPiLy~~a  216 (405)
T PF02101_consen  187 GLEHA--LPHYVT-TYIPLLLVLVANPILYIKA  216 (405)
T ss_pred             hhhhc--chhHHH-HHHHHHHHHHhccHHHHHH
Confidence            32222  222222 3567666665554444443

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.73  E-value=5.6e-06  Score=72.95  Aligned_cols=73  Identities=18%  Similarity=0.348  Sum_probs=52.9

Q ss_pred             HHHHHhhHHHHHHH-HHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHH
Q psy4354         254 EAKRERKAAKTLAI-ITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFK  329 (342)
Q Consensus       254 ~~~~~~k~~k~l~~-v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~  329 (342)
                      .++-+++..+++++ ..+-.++.++|..+..+...+.-+.   .....+...+..+-+++||++-.+.-++||++++
T Consensus       234 ~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  234 TRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             hHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence            34557777777665 4566788899988877765554332   2233455667888999999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.68  E-value=0.0017  Score=56.97  Aligned_cols=72  Identities=17%  Similarity=0.312  Sum_probs=58.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHH
Q psy4354         254 EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQA  327 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~  327 (342)
                      ..++++++.+.+++=.++-.+|-+|..+...+..+..+  ....+.++...+....|.+|-++-.+.++.||+-
T Consensus       231 ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~--~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  231 TYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFE--DAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCC--CcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            55789999999999999999999998776665444322  3456667777888899999999999999999974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.57  E-value=0.00034  Score=47.01  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=55.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhh-hHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhH
Q psy4354         254 EAKRERKAAKTLAIITGAFVICWL-PFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEF  324 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~~f~~cw~-P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~f  324 (342)
                      ++++=+|.+|.+++-=++|+++|+ |...-.+-...........++..++..+..+|+.+|-++|++.-+.-
T Consensus         3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw   74 (76)
T PF11970_consen    3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW   74 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence            445667889999999999999999 97655554442233345678888889999999999999999876643

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.21  E-value=0.0011  Score=54.14  Aligned_cols=116  Identities=15%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccc----------hhHHHHHHHHHHHHHHHHHHHhHhcccCCC
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRN----------ANRIIMMIVVVWSVAFIVSLAPQLGWKDPE   73 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t----------~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~   73 (342)
                      |..+|++...+..++-+.+.+||++=|+.|.++.++++.+          +..+..+..+.|++...+   .+.+.+...
T Consensus        74 C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~l---a~i~~~~~~  150 (201)
T PF11710_consen   74 CQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASL---AFIGLGGPG  150 (201)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHH---HHhccccCc
Confidence            5678999999999999999999999999999962222211          112223333444444333   333323333


Q ss_pred             cccccCccceeccCCc-hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4354          74 YMDRINQQKCMVSQDV-GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRR  124 (342)
Q Consensus        74 ~~~~~~~~~C~~~~~~-~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~  124 (342)
                      |.+.  ...|-.+.+. .+.++..-+--++-...++++|..|+..+|++.|+
T Consensus       151 Y~~~--g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~  200 (201)
T PF11710_consen  151 YGPA--GAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR  200 (201)
T ss_pred             cccc--CcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4333  7889886443 35555554545566678999999999999998764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.03  E-value=0.00054  Score=58.04  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=54.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHHH
Q psy4354         256 KRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAF  328 (342)
Q Consensus       256 ~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~  328 (342)
                      ..|.|+++++++.+..|++.+.--.++.+......+   ..++..+..++...-+.+-||+-...++++.+-+
T Consensus       194 SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~---~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  194 SPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN---SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL  263 (265)
T ss_pred             ChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC---CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence            358999999999999999999998777655433332   2334456677888889999999999999887654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.03  E-value=0.018  Score=50.99  Aligned_cols=81  Identities=12%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             hhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCcccee
Q psy4354           5 LFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCM   84 (342)
Q Consensus         5 ~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~   84 (342)
                      .+...+..++....++.-.++.+||.+|-..|.|..+.+.....++...+-++++...  .+..|++   +.+.....|.
T Consensus       102 ~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~~~~~~g~~l~i~~li~s~~~~--~~i~~~~---p~~gyv~~C~  176 (328)
T PF02117_consen  102 FPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSKKSYIIGIILSILVLILSFITG--FIIYWDD---PLDGYVPSCF  176 (328)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHHe--eEEEeCC---CCcccccccc
Confidence            3444555666777788999999999999877766655444443333333333333332  2223332   1111256887


Q ss_pred             ccCCch
Q psy4354          85 VSQDVG   90 (342)
Q Consensus        85 ~~~~~~   90 (342)
                      ......
T Consensus       177 ~~p~~s  182 (328)
T PF02117_consen  177 YPPKNS  182 (328)
T ss_pred             CCChhH
Confidence            764443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.92  E-value=0.025  Score=49.40  Aligned_cols=115  Identities=8%  Similarity=-0.141  Sum_probs=71.8

Q ss_pred             HHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccC--CCcccccCcccee-
Q psy4354           8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD--PEYMDRINQQKCM-   84 (342)
Q Consensus         8 ~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~--~~~~~~~~~~~C~-   84 (342)
                      -++++++.+.+...-++.++=|-+.+..|..+....++-..+.+-.+.+.++++++|.+.+.+.  +-..+-.-+..-. 
T Consensus       107 ~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fGAI~I~  186 (307)
T PF10322_consen  107 VFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFGAIIIT  186 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCCEEEEE
Confidence            4556677888999999999999999999766666777777788888888888888865443321  1000000011110 


Q ss_pred             --ccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4354          85 --VSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRI  122 (342)
Q Consensus        85 --~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~  122 (342)
                        ..+.........++...+-+++++++++..+.++|+.+
T Consensus       187 ~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k  226 (307)
T PF10322_consen  187 STGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK  226 (307)
T ss_pred             EEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              01111112222333444555788889999999999865

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.47  E-value=0.63  Score=40.43  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             HHHHHhhHHHHHHHHHH-HHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhccChhHHHH
Q psy4354         254 EAKRERKAAKTLAIITG-AFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQA  327 (342)
Q Consensus       254 ~~~~~~k~~k~l~~v~~-~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~  327 (342)
                      ..+.+++..|.+++=++ --++|..|-++.+....+.-+  ...+...+.......=+.++|+.-.+.=+.||+.
T Consensus       237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~--~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r  309 (310)
T PF10319_consen  237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGID--LGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR  309 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCC--hhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence            44667888888877544 468899998888876666543  5667777777777778899999999999999975

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>KOG4564|consensus

Probab=95.42  E-value=0.032  Score=51.14  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=46.9

Q ss_pred             HhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCC-chhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcC
Q psy4354         258 ERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY-ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       258 ~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      -+|++|..++.+=+|.+-++.+       .+.++.. .......+-..|..+...+=-++|+|.|++.|.++||.+.+.
T Consensus       349 y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~  420 (473)
T KOG4564|consen  349 YRKLVKATLVLIPLFGIHYILF-------AFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRW  420 (473)
T ss_pred             HHHHHHHHHHHHHHcCCeeEEE-------EecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhc
Confidence            5677777777666665553332       1222221 122333344567888888889999999999999999998443

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.88  E-value=0.27  Score=42.28  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             hhHHHHHhHHHHhhheeeceeEEEeec-ccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCC--CcccccCccceecc
Q psy4354          10 LSHYNVDMLGYSTVIMFVDKYWAVTNV-DYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDP--EYMDRINQQKCMVS   86 (342)
Q Consensus        10 l~~~~~~~S~~~l~~IaidRY~aI~~~-~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~--~~~~~~~~~~C~~~   86 (342)
                      .......+.......||+||-+|+..| .|++...+--...+++.+-..++.=.. .+++.-+.  +..++.....|..+
T Consensus        87 p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~d~~-vlf~~C~~~i~~p~~C~~~~C~vn  165 (273)
T PF10316_consen   87 PSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLFDQY-VLFGFCDFVIDVPPNCVNFGCAVN  165 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHHHHh-HhhhcCCCCCCCCCCCCccCCCCc
Confidence            333444556788899999999999994 444433332222222222222222222 33443332  23344446667664


Q ss_pred             CC-chhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4354          87 QD-VGYQIFATCSTFYVPLLVILVLYWKIY  115 (342)
Q Consensus        87 ~~-~~~~~~~~~~~~~ip~~~i~~~y~~I~  115 (342)
                      .- ..|-...-.+.+.+-.+..+.+-.+++
T Consensus       166 ~Cf~~Yw~~~~~i~~~li~~~S~~L~~KLf  195 (273)
T PF10316_consen  166 QCFRQYWLTSEMIIFSLIIILSILLCIKLF  195 (273)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            21 223333333444444444444445555

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.46  E-value=0.011  Score=50.12  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      |...+++.+++..++..=+.+.++|=|..+....   ...+++.....+..|.+++++...... .....|    +...|
T Consensus        72 C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~---~~~~~~~~~~~~~gwg~P~~iv~i~~~-~~~~~y----~~~~C  143 (242)
T PF00002_consen   72 CRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVF---NSSRRRFWWYYLIGWGIPALIVVISVA-VNSDGY----GNDNC  143 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhhhHhHHHHHHHHHHHHHHHHHhheeEEEee---cccchhhheeeeeeecCcceeeeeeee-eccccc----ccccc
Confidence            4556777777777787778899999999998731   111445566677889999887774333 221122    23567


Q ss_pred             eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4354          84 MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQT  117 (342)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~  117 (342)
                      -.+. ..+..    ..+..|..+++..+..++..
T Consensus       144 Wl~~-~~~~~----~~f~~P~~~~l~in~vi~~~  172 (242)
T PF00002_consen  144 WLSN-DWGFI----WAFVGPVLIILLINIVIFIL  172 (242)
T ss_dssp             ----------------------------------
T ss_pred             cccC-CCceE----EEEEecccceecccchhhee
Confidence            3332 22222    22456666555555444433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.70  E-value=0.42  Score=39.45  Aligned_cols=106  Identities=11%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             hhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceeccCC
Q psy4354          10 LSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQD   88 (342)
Q Consensus        10 l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~   88 (342)
                      ...+.+..+++.-..+++|||+|... -+|++..+.-.-.+....+    ++-.+...+.+.+..++++ ....+..+..
T Consensus        91 ~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LGPiL~~~li----~~d~~ii~~iy~dE~F~~~-~iSf~l~P~t  165 (236)
T PF02175_consen   91 TGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLGPILVFILI----LIDFLIIYFIYKDEKFSDP-FISFILIPST  165 (236)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeehhHHHHHHH----HHHHHHHHHhhcCCCCCCC-eEEEEEecCc
Confidence            34456777888899999999999999 8888766544433333222    2111112222333333322 2344444545


Q ss_pred             chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy4354          89 VGYQIFATCSTFYVPLLVILVLYWKIYQTARK  120 (342)
Q Consensus        89 ~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~  120 (342)
                      .+..........+.-=+.-.+++..+++.=++
T Consensus       166 sa~~~n~~~~~Ll~~~i~nl~~n~~Ll~~n~~  197 (236)
T PF02175_consen  166 SAPKFNIFFWFLLYLNIFNLIFNCILLRQNRR  197 (236)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333332222224445555555544443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=93.36  E-value=3.6  Score=36.45  Aligned_cols=77  Identities=10%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             hHHHhh-HHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCcccee
Q psy4354           6 FTGVLS-HYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCM   84 (342)
Q Consensus         6 ~~~~l~-~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~   84 (342)
                      +...+. ++.+.+++| -+.+++.-|++....+-... -.+.....=+++|.++++..+ ..+..+.++.+.-  .+.|.
T Consensus        96 ~~F~l~Yyf~mAa~~W-WviLt~~W~lsa~~kw~~e~-i~~~s~yfH~~aW~iP~~~ti-~vL~~~~VdgD~l--tGiC~  170 (328)
T PF01534_consen   96 VVFLLLYYFGMAASLW-WVILTLTWFLSAGLKWGSEA-IEKKSSYFHLVAWGIPAVLTI-AVLALRKVDGDEL--TGICF  170 (328)
T ss_pred             hHHHHHHHHHhHHHHH-HHHHHHHHHHHhhcccCcch-hhhhcchhhhHHhhhhHHHHH-HHHHhcccccccc--cceeE
Confidence            334444 444555555 44558888887776322222 245566778899999999888 5556666555554  77898


Q ss_pred             ccC
Q psy4354          85 VSQ   87 (342)
Q Consensus        85 ~~~   87 (342)
                      .-.
T Consensus       171 Vg~  173 (328)
T PF01534_consen  171 VGN  173 (328)
T ss_pred             EeC
Confidence            743

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.39  E-value=5.4  Score=34.60  Aligned_cols=47  Identities=9%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceeccCCchh
Q psy4354          43 NANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVSQDVGY   91 (342)
Q Consensus        43 t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~   91 (342)
                      .+|+..+=++.+++++++.....++..+. .|+ -.+...|.......+
T Consensus       100 ~rr~~~~d~~i~~g~Pil~m~l~yivQ~~-Rf~-I~e~~GC~~~~~~s~  146 (283)
T PF02076_consen  100 KRRRIIIDLLICFGIPILQMALHYIVQGH-RFD-IVEDVGCYPAIYPSW  146 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cee-EecccCCccCCCCCH
Confidence            36778888999999999988765554332 221 113667877544443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=89.37  E-value=2.7  Score=33.96  Aligned_cols=16  Identities=19%  Similarity=0.185  Sum_probs=13.3

Q ss_pred             HHhhheeeceeEEEee
Q psy4354          20 YSTVIMFVDKYWAVTN   35 (342)
Q Consensus        20 ~~l~~IaidRY~aI~~   35 (342)
                      ...+++|+|||+-|+.
T Consensus       133 vip~aVAIyRy~~VV~  148 (226)
T PF06681_consen  133 VIPVAVAIYRYLIVVL  148 (226)
T ss_pred             cchhhhhhhhhheeee
Confidence            3445799999999998

The function of this family is unknown.

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.03  E-value=0.82  Score=35.30  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             hhHHHHHhHHHHhhheeeceeEEEeeccccc-ccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccc--cCccceecc
Q psy4354          10 LSHYNVDMLGYSTVIMFVDKYWAVTNVDYIH-TRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDR--INQQKCMVS   86 (342)
Q Consensus        10 l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~-~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~--~~~~~C~~~   86 (342)
                      +..++.....+..++|+++|-.+|.+|.-+. .+|.+|..+-..+..++.+..-+-|++.--...++..  .-...|.++
T Consensus        50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Cap~  129 (153)
T PF03383_consen   50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACAPD  129 (153)
T ss_pred             eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccCCC
Confidence            3455666778889999999999999975433 6899999988888888877776667764333222211  115567764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF13853 7tm_4: Olfactory receptor

Probab=83.87  E-value=0.033  Score=42.96  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhcccCCCcccccCccceec---------c-CCchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4354          48 IMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV---------S-QDVGYQIFATCSTFYVPLLVILVLYWKIYQT  117 (342)
Q Consensus        48 ~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~---------~-~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~  117 (342)
                      ..++++.|+.+++..++....-....+.+..+...|+.         . .+..+......+..+.|+.++++.|.+|+..
T Consensus         4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a   83 (144)
T PF13853_consen    4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA   83 (144)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence            35677789888887776554322222222222444442         1 2233444555566789999999999999999


Q ss_pred             HHHHH
Q psy4354         118 ARKRI  122 (342)
Q Consensus       118 vr~~~  122 (342)
                      +.|..
T Consensus        84 vlki~   88 (144)
T PF13853_consen   84 VLKIP   88 (144)
T ss_pred             hhccc
Confidence            88754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		2e-18
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		4e-14
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-10
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-10
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		2e-08
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		4e-08
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		4e-08
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-08
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		5e-08
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-08
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		6e-08
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		7e-08
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		7e-08
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		1e-07
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		3e-07
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		8e-07
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		1e-06
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		1e-06
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		2e-06
3v2w_A	520	Crystal Structure Of A Lipid G Protein-Coupled Rece		4e-06
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		5e-06

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           RE+KA + +AI+ GAF++CW            CQTC++S  L S   WLGY NS LNPVI
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVI 454
Query: 317 YTVFSPEFRQAFKRIL-CGSP 336
           YT F+ EFR+AF +IL CG P
Sbjct: 455 YTTFNIEFRKAFLKILSCGRP 475

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 253 LEAKRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTL 312
           L   RERKAAK L  I  AF++CW            C+ C  +++L  F +WLGY NSTL
Sbjct: 363 LHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CNEHLHMFTIWLGYINSTL 421
Query: 313 NPVIYTVFSPEFRQAFKRIL 332
           NP+IY + +  F++ FKRIL
Sbjct: 422 NPLIYPLCNENFKKTFKRIL 441

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           RE KA KTL II G F +CW             +   + D+L   F WLGY NS +NP+I
Sbjct: 224 REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPII 282
Query: 317 YTVFSPEFRQAFKRIL 332
           Y   SP+FR+AFKR+L
Sbjct: 283 YCR-SPDFRKAFKRLL 297

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           RE KA KTL II G F +CW             +   + D+L   F WLGY NS +NP+I
Sbjct: 226 REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPII 284
Query: 317 YTVFSPEFRQAFKRIL 332
           Y   SP+FR+AFKR+L
Sbjct: 285 YCR-SPDFRKAFKRLL 299

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 119/327 (36%), Gaps = 34/327 (10%)
Query: 20  YSTVIMFVDKYWAV-TNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
           +S + + +D+Y A+   + Y       R   +I + W ++F + L P LGW +   P+  
Sbjct: 118 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 177
Query: 76  DRINQ-----QKCMVSQDV---GYQI-FATCSTFYVPLLVILVLYWKIYQTAXXXXXXXX 126
              +Q     Q   + +DV    Y + F   +   VPLL++L +Y +I+  A        
Sbjct: 178 KNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLE 237
Query: 127 XXXNVLMAGKKPDTSDNKTSHXXXXXXXXXXXXXXCTNVVPPSPNKLSINVIDEDNGINN 186
                L    K     +  +                    PP   KL      ED     
Sbjct: 238 DNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPP---KL------EDK---- 284
Query: 187 ATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVXXXXXXXX 246
             +  S  + D     D      +  + + A  + +     ++    E ++         
Sbjct: 285 --SPDSPEMKDFRHGFDI-----LVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQK 337
Query: 247 XXXXXSLEAKRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWL 305
                    ++E  AAK+LAII G F +CW            C  C +   +L    + L
Sbjct: 338 YLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVL 397
Query: 306 GYFNSTLNPVIYTVFSPEFRQAFKRIL 332
            + NS +NP IY     EFRQ F++I+
Sbjct: 398 SHTNSVVNPFIYAYRIREFRQTFRKII 424

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 462 YCR-SPDFRIAFQELLC 477

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 402 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 460
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 461 YCR-SPDFRIAFQELLC 476

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 416 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 474
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 475 YCR-SPDFRIAFQELLC 490

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 462 YCR-SPDFRIAFQELLC 477

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 267 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 325
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 326 YCR-SPDFRIAFQELLC 341

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 268 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 326
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 327 YCR-SPDFRIAFQELLC 342

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 244 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 302
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 303 YCR-SPDFRIAFQELLC 318

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 429
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 430 YCR-SPDFRIAFQELLC 445

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E KA KTL II G F +CW             Q   I   +     W+GY NS  NP+I
Sbjct: 211 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 269
Query: 317 YTVFSPEFRQAFKRILC 333
           Y   SP+FR AF+ +LC
Sbjct: 270 YCR-SPDFRIAFQELLC 285

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           +E+KAA+TL+ I  AF+I W            C +C    Y  +   WL Y NST+NPV 
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYW-NLGYWLCYINSTVNPVC 426
Query: 317 YTVFSPEFRQAFKRIL 332
           Y + +  FR  FK +L
Sbjct: 427 YALCNKTFRTTFKTLL 442

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
           ++E  AAK+LAII G F +CW            C  C +   +L    + L + NS +NP
Sbjct: 388 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 447
Query: 315 VIYTVFSPEFRQAFKRIL 332
            IY     EFRQ F++I+
Sbjct: 448 FIYAYRIREFRQTFRKII 465

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
           ++E  AAK+LAII G F +CW            C  C +   +L    + L + NS +NP
Sbjct: 226 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
            IY     EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
           ++E  AAK+LAII G F +CW            C  C +   +L    + L + NS +NP
Sbjct: 226 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
            IY     EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
           RE+K  +T+  I  AF+I W            C  C I + + +   WL Y NST+NP  
Sbjct: 382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPAC 440
Query: 317 YTVFSPEFRQAFKRIL-CGSPNRGRFR 342
           Y + +  F++ FK +L C   N G  R
Sbjct: 441 YALCNATFKKTFKHLLMCHYKNIGATR 467

>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3.35a Length = 520

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 263 KTLAIITGAFVICWXXXXXXXXXXXXCQ--TCYISDYLASFFLWLGYFNSTLNPVIYTVF 320
           KT+ I+   F+ CW            C+  TC I  + A +FL L   NS  NP+IYT+ 
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDIL-FRAEYFLVLAVLNSGTNPIIYTLT 479
Query: 321 SPEFRQAFKRILCGSP 336
           + E R+AF RI+ G P
Sbjct: 480 NKEMRRAFIRIM-GRP 494

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
           ++E  AAK+ AII G F +CW            C  C +   +L    + L + NS +NP
Sbjct: 226 QKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
            IY     EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	7e-70
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-69
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	9e-69
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	7e-68
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-65
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-63
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-55
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-30
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	3e-25
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-29
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	5e-21
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-27
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	1e-18
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	5e-05
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-16
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-16
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-09
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-15
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	1e-14
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-10

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  224 bits (572), Expect = 7e-70
 Identities = 60/347 (17%), Positives = 119/347 (34%), Gaps = 34/347 (9%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
            D+Y+ VT  + Y   R      MMI   W ++FI+     L W+    +  +   +C +
Sbjct: 119 FDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI 178

Query: 86  S--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQR-------------- 129
               +         + FY+P++++ VLYW I + ++ RI      R              
Sbjct: 179 QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTE 238

Query: 130 --------NVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDED 181
                   ++L      + + ++    I           +   +     +     ++   
Sbjct: 239 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 298

Query: 182 NGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHK 241
                  +  ++  A   +       T +    N+   +        + +  +       
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358

Query: 242 IPPTKK--------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY 293
               K+                 RE+K  +T+  I  AF+I W P+ +M L+   C  C 
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC- 417

Query: 294 ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           I + + +   WL Y NST+NP  Y + +  F++ FK +L        
Sbjct: 418 IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKNIG 464

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  224 bits (572), Expect = 1e-69
 Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 38/352 (10%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN----Q 80
           VD+Y+A+T+   Y      N+  ++I++VW V+ + S  P Q+ W    + + IN    +
Sbjct: 136 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 195

Query: 81  QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN---------- 130
             C    +  Y I ++  +FYVPL++++ +Y +++Q A++++      R           
Sbjct: 196 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK 255

Query: 131 ------------VLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVI 178
                       +L      + + ++    I           +   +     +     ++
Sbjct: 256 DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGIL 315

Query: 179 -------DEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNH 231
                    D+       +   ++        A    S+       +     N A    +
Sbjct: 316 RNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 375

Query: 232 NNECVQVKHKIPPTKK-EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ 290
           N    + K  I   +           +E KA KTL II G F +CWLPFF++ ++  +  
Sbjct: 376 NQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD 435

Query: 291 TCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
              I   +     W+GY NS  NP+IY   SP+FR AF+ +LC   +  +  
Sbjct: 436 NL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAY 485

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  221 bits (563), Expect = 9e-69
 Identities = 68/350 (19%), Positives = 129/350 (36%), Gaps = 36/350 (10%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI---NQQK 82
           +D+Y +V   + Y+  R   R    I+  W ++F+  + P LGW        +   ++ +
Sbjct: 104 IDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFMQQTSVRREDKCE 162

Query: 83  CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKP---- 138
                   +++      FY+P L++L  Y KIY+  R+        R       K     
Sbjct: 163 TDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDT 222

Query: 139 ------------------DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDE 180
                             + + ++    I           +   +     +     ++  
Sbjct: 223 EGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN 282

Query: 181 DNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKH 240
                   +  ++  A   +       T +    N+   +        + +  +      
Sbjct: 283 AKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQ 342

Query: 241 KIPPTKK--------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC 292
                K+             L   RERKAAK L  I  AF++CW+P+F+  +++  C+ C
Sbjct: 343 TPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC 402

Query: 293 YISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
             +++L  F +WLGY NSTLNP+IY + +  F++ FKRIL        + 
Sbjct: 403 -CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGENLYF 451

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  219 bits (559), Expect = 7e-68
 Identities = 88/353 (24%), Positives = 147/353 (41%), Gaps = 43/353 (12%)

Query: 27  VDKYWAVTN-VDYIHT---RNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82
           +D+Y AV   V Y H     +  R+ +MI  VW +AF VS     G+         +   
Sbjct: 135 IDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG-----DPTV 189

Query: 83  CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQ-------------- 128
           C +S +  + I+++  +FY+P  V +++Y +IY   ++R R+   +              
Sbjct: 190 CSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYK 248

Query: 129 -----------------RNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPN 171
                             ++  A  + D +  + ++ +  K        +  +       
Sbjct: 249 DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGIL 308

Query: 172 KLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNH 231
           + +      D+       +   ++        A    S+       +     N A    +
Sbjct: 309 RNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 368

Query: 232 NNECVQVKHKIPPTKK-EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ 290
           N    + K  I   +           RE+KA + +AI+ GAF++CWLPFF+  +L   CQ
Sbjct: 369 NQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQ 428

Query: 291 TCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL-CGSPNRGRFR 342
           TC++S  L S   WLGY NS LNPVIYT F+ EFR+AF +IL CG P    F+
Sbjct: 429 TCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPLEVLFQ 481

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  213 bits (543), Expect = 2e-65
 Identities = 67/359 (18%), Positives = 114/359 (31%), Gaps = 45/359 (12%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI------- 78
           +D+Y A+   + Y       R   +I + W ++F + L P LGW +              
Sbjct: 115 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 174

Query: 79  -NQQKCMVSQDVGYQIFATCST----FYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLM 133
              Q   + +DV    +           VPLL++L +Y +I+  AR+++      R    
Sbjct: 175 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEG 234

Query: 134 A--------------------GKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKL 173
                                 K P  +  K+       +     I K       + +  
Sbjct: 235 LRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVD 294

Query: 174 SINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNN 233
           +       N        S   +      +   +         T                N
Sbjct: 295 AAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVN 354

Query: 234 ECVQVKHKIPPTKK-----------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMM 282
                 +   P +                    ++E  AAK+LAII G F +CWLP  ++
Sbjct: 355 LAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHII 414

Query: 283 ALLLPLCQTC-YISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
                 C  C +   +L    + L + NS +NP IY     EFRQ F++I+     R +
Sbjct: 415 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  207 bits (527), Expect = 2e-63
 Identities = 66/328 (20%), Positives = 115/328 (35%), Gaps = 34/328 (10%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQ----- 80
           +D+Y A+   + Y       R   +I + W ++F + L P LGW +              
Sbjct: 125 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 184

Query: 81  ---QKCMVSQDV----GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLM 133
              Q   + +DV        F   +   VPLL++L +Y +I+  AR+++         L 
Sbjct: 185 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLN 244

Query: 134 AGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSL 193
              K                     I+K  N          +     D            
Sbjct: 245 DNLK--------------------VIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDK 284

Query: 194 ILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESL 253
                           +  + + A  + +     ++    E ++        K  ++   
Sbjct: 285 SPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS 344

Query: 254 EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YISDYLASFFLWLGYFNSTL 312
             ++E  AAK+LAII G F +CWLP  ++      C  C +   +L    + L + NS +
Sbjct: 345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVV 404

Query: 313 NPVIYTVFSPEFRQAFKRILCGSPNRGR 340
           NP IY     EFRQ F++I+     R +
Sbjct: 405 NPFIYAYRIREFRQTFRKIIRSHVLRQQ 432

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  188 bits (478), Expect = 1e-55
 Identities = 64/345 (18%), Positives = 121/345 (35%), Gaps = 34/345 (9%)

Query: 27  VDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVS 86
           +++Y  +  +   +  N  R+ ++I   W ++ I+   P +GW     +   +    +  
Sbjct: 158 IERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCST--VLPL 215

Query: 87  QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTS 146
               Y +F T   F + LL I++LY +IY   R R      + +  +  K    ++   +
Sbjct: 216 YHKHYILFCTTV-FTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYT 274

Query: 147 HFIFFKKRKFFRIKKC---------TNVVPPSPNKLSINVIDEDNGINNATTSSSLILAD 197
             I     K   +             N         +  + ++D          +  L  
Sbjct: 275 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKP 334

Query: 198 GHSNSDADRRTSINNEA-------NTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKK 250
            + + DA RR ++ N            FT +      +          K +       + 
Sbjct: 335 VYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRA 394

Query: 251 ESL--------------EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YIS 295
           + +               +       KT+ I+   F+ CW P F++ LL   C+      
Sbjct: 395 KRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDI 454

Query: 296 DYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
            + A +FL L   NS  NP+IYT+ + E R+AF RI+        
Sbjct: 455 LFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLF 499

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  120 bits (302), Expect = 1e-30
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 227 SQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLL 286
               H     QV+         ++ S    +E KA KTL II G F +CWLPFF++ ++ 
Sbjct: 386 EGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVH 445

Query: 287 PLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
            +     I   +     W+GY NS  NP+IY   SP+FR AF+ +LC   +  +
Sbjct: 446 VIQDNL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLK 497

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  105 bits (263), Expect = 3e-25
 Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRI----NQ 80
           VD+Y+A+T+   Y      N+  ++I++VW V+ + S  P Q+ W    + + I     +
Sbjct: 278 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 337

Query: 81  QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDT 140
             C    +  Y I ++  +FYVPL++++ +Y +++Q A++++++  +             
Sbjct: 338 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV 397

Query: 141 SDNKTSHFIFFKKRKFF 157
             +  +     +  KF 
Sbjct: 398 EQDGRTGHGLRRSSKFC 414

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  114 bits (286), Expect = 2e-29
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 240 HKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLA 299
            KI    K K   +   RE KA KTL II G F +CWLPFF++ ++    +   + D+L 
Sbjct: 209 RKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLF 267

Query: 300 SFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
             F WLGY NS +NP+IY   SP+FR+AFKR+L       R
Sbjct: 268 VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKADR 307

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 90.9 bits (226), Expect = 5e-21
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 27  VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGW----KDPEYMDRINQ 80
           +D+Y A+T+   Y       R  ++I  VW+++ +VS  P  + W             + 
Sbjct: 107 IDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP 166

Query: 81  QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN 130
             C    +  Y I ++  +FY+PLL+++ +  ++Y+ A+++IR+  +   
Sbjct: 167 GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASK 216

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score =  111 bits (278), Expect = 1e-27
 Identities = 52/362 (14%), Positives = 113/362 (31%), Gaps = 51/362 (14%)

Query: 23  VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
             M VD+Y AV + V  +  R      ++ V  W ++  + L P +     +Y       
Sbjct: 108 CTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGL-PVMFMATTKYRQ--GSI 164

Query: 82  KCMVS-------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA 134
            C ++        +   +I      F +P+L+I V Y  +    +         R     
Sbjct: 165 DCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGL 224

Query: 135 GKK--------------------PDTSDNKTSHF----------IFFKKRKFFRIKKCTN 164
             K                    P  +  K+             I   + +    +    
Sbjct: 225 RLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 284

Query: 165 VVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN----SDADRRTSINNEANTAFTI 220
            V        +  + +           +++   G +     +++ R          A  +
Sbjct: 285 AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNL 344

Query: 221 THNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFF 280
             +   +Q+ +  + V    +       +K+    +  R+  + + ++   F++CW P  
Sbjct: 345 AKSRWYNQTPNRAKRVITTFRTGTWDAYEKD----RNLRRITRMVLVVVAVFIVCWTPIH 400

Query: 281 MMALL--LPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNR 338
           +  ++  L              F + LGY NS LNPV+Y      F++ F+     + + 
Sbjct: 401 IYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSST 460

Query: 339 GR 340
             
Sbjct: 461 IE 462

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYIS 295
           + +     P     +   +   +RK  K + ++   F ICWLPF +  LL  +    Y+ 
Sbjct: 221 ITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK 280

Query: 296 DYLASFFL---WLGYFNSTLNPVIYTVFSPEFRQAFKRILC 333
            ++   +L   WL   ++  NP+IY   +  FR  FK    
Sbjct: 281 KFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFR 321

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 31/137 (22%)

Query: 20  YSTVIMFVDKYWAVTNVDYIH----TRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYM 75
           YS   +  D+Y A+     IH      +A    ++I V+W +A +++  PQ  +   E M
Sbjct: 121 YSMTAVAFDRYMAI-----IHPLQPRLSATATKVVICVIWVLALLLAF-PQGYYSTTETM 174

Query: 76  DRINQQKCMVS--------QDVGYQIFATCSTFYVPLLVILVLYWKIY-----------Q 116
              ++  CM+          +  Y I  T   +++PLLVI   Y  +             
Sbjct: 175 P--SRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS 232

Query: 117 TARKRIRRRRQQRNVLM 133
           + R   +   +++ V M
Sbjct: 233 SDRYHEQVSAKRKVVKM 249

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 77.3 bits (190), Expect = 7e-16
 Identities = 26/107 (24%), Positives = 48/107 (44%)

Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYIS 295
           +    K    K+ +K    A  E + AK   +I   F++ W P+ ++ALL       +++
Sbjct: 234 MAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT 293

Query: 296 DYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
            Y A   +     ++  NP+IY+V  P+FR+A  +         +F 
Sbjct: 294 PYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFD 340

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 20  YSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI 78
            +  ++ +D+Y  +   +      +  R  +MI+ VW  + + ++ P  GW    Y    
Sbjct: 124 MTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG--AYTLEG 181

Query: 79  NQQKCMV---SQDVGYQIFATCST---FYVPLLVILVLYWKIYQTARKRIRRRRQQRNVL 132
               C     S+D   +    C     F+ P+L+I   Y+ I  +     +         
Sbjct: 182 VLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR- 240

Query: 133 MAGKKPDTSDNKTS 146
           +  K+   +    +
Sbjct: 241 LNAKELRKAQAGAN 254

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 55/380 (14%), Positives = 114/380 (30%), Gaps = 75/380 (19%)

Query: 23  VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
             + +D+Y A+ +  +    R      ++ V VW  A ++++ P   + +    D  ++ 
Sbjct: 138 AFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI-PDFIFANVSEAD--DRY 194

Query: 82  KCMV-----SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGK 136
            C          V +Q         +P +VIL  Y  I            +   +     
Sbjct: 195 ICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRID---- 250

Query: 137 KPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINV-IDEDNGIN-NATTSSSLI 194
                  +      +K  + +      +++  SP+  +    +D+  G N N   +    
Sbjct: 251 -------EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEA 303

Query: 195 LADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV---------------- 238
               + + DA  R  I   A         +   ++   N   Q+                
Sbjct: 304 EKLFNQDVDAAVR-GILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQ 362

Query: 239 KHKIPPTKKEKKESLEAKRERKAAKTLAI--------------------------ITGAF 272
           + +         +S    +    AK +                            +  AF
Sbjct: 363 QKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAF 422

Query: 273 VICWLPFFMMALL---------LPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPE 323
             CWLP+++   +            C+         S    L +F+  LNP++Y     +
Sbjct: 423 FACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK 482

Query: 324 FRQAFKRIL-CGSPNRGRFR 342
           F+ + +  L  G P    F+
Sbjct: 483 FKTSAQHALTSGRPLEVLFQ 502

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 256 KRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV 315
           K E++  + + I+  AF+ICWLP+  +A  +   Q         +   +    ++  NPV
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 305

Query: 316 IYTVFSPEFRQAFKRILCGSPNR 338
           IY + + +FR      LC   N 
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKNP 328

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 20  YSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN 79
           +S V++ +++Y  V           N  IM +   W +A   +  P +GW    Y+    
Sbjct: 127 WSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGM 184

Query: 80  QQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN 130
           Q  C +        + +  + I+     F +PL+VI   Y ++  T ++   ++++   
Sbjct: 185 QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	100.0
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	100.0
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	100.0
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	100.0
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	100.0
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	100.0
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	100.0
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.98
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.97
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.97
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.97
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.04
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.45
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.27

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=7.8e-42  Score=320.20  Aligned_cols=122  Identities=14%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccc---cC
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDR---IN   79 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~---~~   79 (342)
                      +-+.+++..++..+|++++++||+|||+||++ .+|+..+|++++.++++++|++++++++|++++++......+   ..
T Consensus       110 C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~  189 (510)
T 4grv_A          110 CRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPG  189 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCC
Confidence            34667888999999999999999999999999 688888999999999999999999999999988764332221   12


Q ss_pred             ccceeccCC----chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4354          80 QQKCMVSQD----VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRR  125 (342)
Q Consensus        80 ~~~C~~~~~----~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~  125 (342)
                      ...|....+    ..|.++.+++.|++|+++|+++|++|++.++++.+..
T Consensus       190 ~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~  239 (510)
T 4grv_A          190 GLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIF  239 (510)
T ss_dssp             GEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHH
T ss_pred             ccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            445766443    3466677788899999999999999999999765443

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.2e-36  Score=278.01  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=95.2

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++++...... ......
T Consensus        93 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~-~~~~~~  171 (484)
T 3vw7_A           93 CRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVP-GLGITT  171 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEET-TTTEEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CCCCce
Confidence            45678889999999999999999999999999 6777789999999999999999999999988887654322 223456


Q ss_pred             eeccCCc--------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4354          83 CMVSQDV--------GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRR  126 (342)
Q Consensus        83 C~~~~~~--------~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~  126 (342)
                      |......        .|.++..++.|++|+++|+++|++|++.++++.++..
T Consensus       172 C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~  223 (484)
T 3vw7_A          172 CHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFE  223 (484)
T ss_dssp             ESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             eeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence            8664221        1556666888999999999999999999998765443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=5.4e-35  Score=273.31  Aligned_cols=118  Identities=23%  Similarity=0.468  Sum_probs=94.8

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhH-hcccCCCcccccCcc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQ-LGWKDPEYMDRINQQ   81 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~-~~~~~~~~~~~~~~~   81 (342)
                      +-+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|+++++++++|+ ++|...... .  ..
T Consensus       113 C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~-~--~~  189 (500)
T 2rh1_A          113 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ-E--AI  189 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSH-H--HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeeccccc-C--cc
Confidence            44567788889999999999999999999999 6777889999999999999999999996555 455443211 1  22


Q ss_pred             ce-------eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4354          82 KC-------MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRR  124 (342)
Q Consensus        82 ~C-------~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~  124 (342)
                      .|       .......|.++.+++.|++|+++|+++|++|++.+|++.++
T Consensus       190 ~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          190 NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             HHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             eecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23       22345678888888899999999999999999999997665

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=4.2e-35  Score=271.51  Aligned_cols=124  Identities=22%  Similarity=0.405  Sum_probs=103.0

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++.+++.++++++|++++++++|++++|.........+...
T Consensus        96 C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (467)
T 3uon_A           96 CDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGE  175 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCc
Confidence            45778899999999999999999999999999 67888899999999999999999999999888766432222223556


Q ss_pred             eecc--CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354          83 CMVS--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ  127 (342)
Q Consensus        83 C~~~--~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~  127 (342)
                      |...  ....|.++..++.|++|+++++++|++|++.+|++.++...
T Consensus       176 C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  222 (467)
T 3uon_A          176 CYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEM  222 (467)
T ss_dssp             CCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             ceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            7664  44567788888899999999999999999999987655443

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=100.00  E-value=2e-34  Score=268.36  Aligned_cols=287  Identities=24%  Similarity=0.354  Sum_probs=179.4

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccc--cCc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDR--INQ   80 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~--~~~   80 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|++++|........  ...
T Consensus        92 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~  171 (488)
T 3eml_A           92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS  171 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            45678888899999999999999999999999 677888999999999999999999999999998886554321  113


Q ss_pred             cceeccC----------CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceee
Q psy4354          81 QKCMVSQ----------DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIF  150 (342)
Q Consensus        81 ~~C~~~~----------~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (342)
                      ..|....          ...|.++.+++.+++|+++++++|++|++.+|++.++..........          ......
T Consensus       172 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~----------~~~~~~  241 (488)
T 3eml_A          172 QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGL----------RLKIYK  241 (488)
T ss_dssp             CSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCC----------EEEEEE
T ss_pred             cccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccccc----------chhhcc
Confidence            4454421          12345556778899999999999999999999876554432110000          000000


Q ss_pred             ccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCC
Q psy4354         151 FKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSN  230 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                                   ...       .. .....+...+...   ..+..................+
T Consensus       242 -----------------------------~~~-------~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  281 (488)
T 3eml_A          242 -----------------------------DTE-------GY-YTIGIGHLLTKSP---SLNAAKSELDKAIGRNTNGVIT  281 (488)
T ss_dssp             -----------------------------CTT-------SC-EEEETTEEEESSS---CHHHHHHHHHHHHTSCCTTBCC
T ss_pred             -----------------------------ccc-------cc-eeccccccCCCCc---cccccccccccCCCCCCCCCCC
Confidence                                         000       00 0000000000000   0000000000000000000000


Q ss_pred             CCcccc--------------------------------------------------------------ccc---cCC---
Q psy4354         231 HNNECV--------------------------------------------------------------QVK---HKI---  242 (342)
Q Consensus       231 ~~~~~~--------------------------------------------------------------~~~---~~~---  242 (342)
                      +.+...                                                              +..   ...   
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (488)
T 3eml_A          282 KDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY  361 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHTTCHHHHHHHHTTCHHHHHHHHTTSHHH
T ss_pred             hhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCCccCCCCcchhhhhccccccccCcccccCc
Confidence            000000                                                              000   000   


Q ss_pred             --C-----------CCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC-CchhHHHHHHHHHHhh
Q psy4354         243 --P-----------PTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YISDYLASFFLWLGYF  308 (342)
Q Consensus       243 --~-----------~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~  308 (342)
                        .           ............++|+|++||+++++++|++||+|+.++.++..+.+.. .....+..++.+|+++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  441 (488)
T 3eml_A          362 NQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT  441 (488)
T ss_dssp             HHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHH
Confidence              0           0000011223356899999999999999999999999999998887643 4566778889999999


Q ss_pred             cccccchhhhccChhHHHHHHHHHhcCCCCCC
Q psy4354         309 NSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR  340 (342)
Q Consensus       309 ns~vNPiiY~~~n~~fR~~~~~ll~~~~~~~~  340 (342)
                      |+++||+||+++|++||++++++|+|++.+++
T Consensus       442 ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~~  473 (488)
T 3eml_A          442 NSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ  473 (488)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC-
T ss_pred             HhhhchhhhhhcCHHHHHHHHHHHhhcccccC
Confidence            99999999999999999999999987765543

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=268.12  Aligned_cols=283  Identities=29%  Similarity=0.469  Sum_probs=176.0

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-ccc---ccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccC
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDY---IHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN   79 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y---~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~   79 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|   ....+.+++.++++++|++++++++|+++++....     +
T Consensus       112 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~-----~  186 (481)
T 3pbl_A          112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG-----D  186 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS-----S
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheecccC-----C
Confidence            45667888899999999999999999999999 666   46789999999999999999999999888877532     2


Q ss_pred             ccceeccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccccc
Q psy4354          80 QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRI  159 (342)
Q Consensus        80 ~~~C~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ...|... ...|.++..++.+++|+++++++|++|++.+|++.++..............+..                  
T Consensus       187 ~~~C~~~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------  247 (481)
T 3pbl_A          187 PTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIY------------------  247 (481)
T ss_dssp             TTCCSCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCE------------------
T ss_pred             CCccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccc------------------
Confidence            4567664 345777888889999999999999999999997654332211100000000000                  


Q ss_pred             cccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc---
Q psy4354         160 KKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV---  236 (342)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (342)
                                                .......... .+...   ....+...........................   
T Consensus       248 --------------------------~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (481)
T 3pbl_A          248 --------------------------KDTEGYYTIG-IGHLL---TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFN  297 (481)
T ss_dssp             --------------------------ECSSSCEEET-TTEEE---ESSSCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHH
T ss_pred             --------------------------cCcccceeec-ccccc---cCCcccccCCCcccchhccCCCceeccCCchhccc
Confidence                                      0000000000 00000   00000000000000000000000000000000   


Q ss_pred             -----------------------------------------------------ccc------cCCCCCc-ccchhh----
Q psy4354         237 -----------------------------------------------------QVK------HKIPPTK-KEKKES----  252 (342)
Q Consensus       237 -----------------------------------------------------~~~------~~~~~~~-~~~~~~----  252 (342)
                                                                           +..      ....... ......    
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (481)
T 3pbl_A          298 QDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR  377 (481)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCHHHHHHHHHTSHHHHHSHHHHHH
T ss_pred             CCcccccccccccCccCccccccccccchhccccccccCCCCCCCcccccchhccccccccchhhhccccccCCcccccc
Confidence                                                                 000      0000000 000000    


Q ss_pred             -------------HHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhc
Q psy4354         253 -------------LEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTV  319 (342)
Q Consensus       253 -------------~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~  319 (342)
                                   ...++|+|++||+++++++|++||+|+.++.++..+.+.......+..++.+|.++|+++||+||++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~  457 (481)
T 3pbl_A          378 VITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTT  457 (481)
T ss_dssp             HHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHH
Confidence                         0013589999999999999999999999999998888776677888899999999999999999999


Q ss_pred             cChhHHHHHHHHHhcCCCCCC
Q psy4354         320 FSPEFRQAFKRILCGSPNRGR  340 (342)
Q Consensus       320 ~n~~fR~~~~~ll~~~~~~~~  340 (342)
                      +|++||++++++|+|++..++
T Consensus       458 ~~~~fR~~~~~ll~c~~~~~~  478 (481)
T 3pbl_A          458 FNIEFRKAFLKILSCGRPLEV  478 (481)
T ss_dssp             HCHHHHHHHHHHHCC------
T ss_pred             cCHHHHHHHHHHHhccCcHHH
Confidence            999999999999987775543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=100.00  E-value=2.1e-34  Score=265.39  Aligned_cols=287  Identities=23%  Similarity=0.356  Sum_probs=176.2

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCccccc--Cc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI--NQ   80 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~--~~   80 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|++++|.........  ..
T Consensus       102 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~  181 (447)
T 4eiy_A          102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS  181 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCcccccc
Confidence            44677888899999999999999999999999 6778889999999999999999999999999988865543211  12


Q ss_pred             cceecc----------CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceee
Q psy4354          81 QKCMVS----------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIF  150 (342)
Q Consensus        81 ~~C~~~----------~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (342)
                      ..|...          ....+.++.+++.+++|+++++++|++|++.+|++.++..........+...........    
T Consensus       182 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  257 (447)
T 4eiy_A          182 QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAA----  257 (447)
T ss_dssp             TTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHH----
T ss_pred             ccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccch----
Confidence            334332          112233333456789999999999999999999988776542211100000000000000    


Q ss_pred             ccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCC
Q psy4354         151 FKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSN  230 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                               ...+..          ................   .        ....++.+...
T Consensus       258 -------------------------~~~~~~----------~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~  291 (447)
T 4eiy_A          258 -------------------------QVKDAL----------TKMRAAALDAQKATPP---K--------LEDKSPDSPEM  291 (447)
T ss_dssp             -------------------------HHHHHH----------HHHHHHHHHHHC--------------------------C
T ss_pred             -------------------------hhhccc----------hhhhccCCCCCCCCCC---C--------CcCCCCCCccc
Confidence                                     000000          0000000000000000   0        00000000000


Q ss_pred             CCccc------------------------ccc------ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Q psy4354         231 HNNEC------------------------VQV------KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFF  280 (342)
Q Consensus       231 ~~~~~------------------------~~~------~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~  280 (342)
                      .....                        .+.      .............+...++|+|++||+++++++|++||+|+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~  371 (447)
T 4eiy_A          292 KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLH  371 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhHHHHHHHHHHHHHHHhhhhhheeccHHH
Confidence            00000                        000      000000001122233457899999999999999999999999


Q ss_pred             HHHHHHhhcCC-CCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcCCCCCC
Q psy4354         281 MMALLLPLCQT-CYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR  340 (342)
Q Consensus       281 i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~~~~~  340 (342)
                      ++.++..+.+. .....++..++.+|.++|+++||+||+++|++||++++++|+|++++++
T Consensus       372 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r~~  432 (447)
T 4eiy_A          372 IINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ  432 (447)
T ss_dssp             HHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhccC
Confidence            99999888654 3456677888999999999999999999999999999999987776543

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=266.70  Aligned_cols=122  Identities=24%  Similarity=0.454  Sum_probs=97.5

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCccc-ccCcc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMD-RINQQ   81 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~-~~~~~   81 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++ |.++|..+.... .....
T Consensus        81 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~-p~~~~~~~~~~~~~~~~~  159 (452)
T 3rze_A           81 CLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFMQQTSVRRED  159 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHH-HHHCCCC-------CCSS
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCCC
Confidence            45678888999999999999999999999999 6788889999999999999999999988 566666544322 12355


Q ss_pred             ceecc--CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4354          82 KCMVS--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRR  126 (342)
Q Consensus        82 ~C~~~--~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~  126 (342)
                      .|..+  ....|.++..++.+++|+++++++|++|++.+|++.++..
T Consensus       160 ~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~  206 (452)
T 3rze_A          160 KCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFE  206 (452)
T ss_dssp             SSCCSCTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred             eecCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            67553  3455777888899999999999999999999987655433

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=100.00  E-value=6.5e-34  Score=267.14  Aligned_cols=113  Identities=20%  Similarity=0.433  Sum_probs=89.1

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +.+..++..++.++|++++++||+|||+||+.++|...++++++.++++++|++++++++||+++|..+.     +...|
T Consensus       135 c~~~~~~~~~~~~~S~~~l~~isidRy~aI~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~-----~~~~C  209 (520)
T 3v2y_A          135 WFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCIS-----ALSSC  209 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCTT-----CGGGB
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhEEeccccccccchhHHHHHHHHHHHHHHHHHHHHHHeecccc-----CCCcc
Confidence            4456788888999999999999999999999446677899999999999999999999999999988652     24578


Q ss_pred             eccC---CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4354          84 MVSQ---DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRI  122 (342)
Q Consensus        84 ~~~~---~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~  122 (342)
                      ...+   ...|.++ .++.|++|+++|++||++|++.+|++.
T Consensus       210 ~~~~~~~~~~~~~~-~~~~~~lPl~ii~~~Y~~I~~~l~~~~  250 (520)
T 3v2y_A          210 STVLPLYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRN  250 (520)
T ss_dssp             CSSSTTBBHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7653   2334443 455799999999999999999999886

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=100.00  E-value=1.1e-32  Score=254.31  Aligned_cols=217  Identities=20%  Similarity=0.356  Sum_probs=173.1

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|+++++++++++++|+......  ....
T Consensus       108 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~--~~~~  185 (448)
T 2z73_A          108 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG--VLCN  185 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECT--TSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecC--Ccee
Confidence            44567788889999999999999999999999 77888899999999999999999999999998887644333  2556


Q ss_pred             eeccCC------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccc
Q psy4354          83 CMVSQD------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKF  156 (342)
Q Consensus        83 C~~~~~------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
                      |...+.      ..|.++..++.+++|+++++++|++|++.+|++.++........                        
T Consensus       186 c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~------------------------  241 (448)
T 2z73_A          186 CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL------------------------  241 (448)
T ss_dssp             EEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTT------------------------
T ss_pred             EecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------------
Confidence            766421      24555666777899999999999999999999887765521100                        


Q ss_pred             ccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc
Q psy4354         157 FRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV  236 (342)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (448)
T 2z73_A          242 --------------------------------------------------------------------------------  241 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchh
Q psy4354         237 QVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVI  316 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPii  316 (342)
                             .....++.....++|+|++|++++++++|++||+|+.++.++..+............+..++.++|+++||+|
T Consensus       242 -------~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiI  314 (448)
T 2z73_A          242 -------NAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMI  314 (448)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             -------hhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchH
Confidence                   0001112223446789999999999999999999999999887776543345667778889999999999999


Q ss_pred             hhccChhHHHHHHHHHh
Q psy4354         317 YTVFSPEFRQAFKRILC  333 (342)
Q Consensus       317 Y~~~n~~fR~~~~~ll~  333 (342)
                      |+++|++||++++++|+
T Consensus       315 Y~~~~~~fR~~~~~~~~  331 (448)
T 2z73_A          315 YSVSHPKFREAISQTFP  331 (448)
T ss_dssp             HHHHCHHHHHHHHHHCG
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            99999999999999984

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=100.00  E-value=3.2e-33  Score=245.41  Aligned_cols=215  Identities=32%  Similarity=0.579  Sum_probs=163.8

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +-+.+++..++..+|++++++||+|||+||++ .+|+..++++++..+++++|++++++++||++.........+  ...
T Consensus        84 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~  161 (315)
T 4amj_A           84 CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQ--ALK  161 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCC--ccc
Confidence            34567888899999999999999999999999 677778899999999999999999999888876543332221  222


Q ss_pred             e-------eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          83 C-------MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        83 C-------~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                      |       .......|.+...++.+++|+++++++|.+|++.+|++.++.....                          
T Consensus       162 c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~--------------------------  215 (315)
T 4amj_A          162 CYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRAS--------------------------  215 (315)
T ss_dssp             HHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred             cccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc--------------------------
Confidence            3       2234556777777888899999999999999999998654333200                          


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (315)
T 4amj_A          216 --------------------------------------------------------------------------------  215 (315)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccch
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV  315 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPi  315 (342)
                                 .++..+...++|+|+++++++++++|++||+|+.+..++..+.++. .......+..++.++|+++||+
T Consensus       216 -----------~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~nPi  283 (315)
T 4amj_A          216 -----------KRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPI  283 (315)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-SCHHHHHHHHHHHHHGGGTHHH
T ss_pred             -----------ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhccccHH
Confidence                       0011122446789999999999999999999999999988776543 4566777888899999999999


Q ss_pred             hhhccChhHHHHHHHHHhcCCCCC
Q psy4354         316 IYTVFSPEFRQAFKRILCGSPNRG  339 (342)
Q Consensus       316 iY~~~n~~fR~~~~~ll~~~~~~~  339 (342)
                      +|+ +|++||++++++|+|++.+.
T Consensus       284 iY~-~~~~fR~~~~~~l~~~~~~~  306 (315)
T 4amj_A          284 IYC-RSPDFRKAFKRLLAFPRKAD  306 (315)
T ss_dssp             HGG-GSHHHHHHHHHHHC------
T ss_pred             HHc-CcHHHHHHHHHHhCCCCcch
Confidence            999 99999999999998876554

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=8.4e-35  Score=272.01  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++.+.....   .+...
T Consensus       119 C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~---~~~~~  195 (502)
T 3odu_A          119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA---DDRYI  195 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEEC---SSSEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeecc---CCceE
Confidence            55678889999999999999999999999999 678888899999999999999999999988776553222   12566


Q ss_pred             eeccCC-----chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354          83 CMVSQD-----VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ  127 (342)
Q Consensus        83 C~~~~~-----~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~  127 (342)
                      |...+.     ..|.++..++.+++|+++++++|++|++.+|++.++...
T Consensus       196 C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  245 (502)
T 3odu_A          196 CDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFE  245 (502)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHH
T ss_pred             EeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence            875433     235566677889999999999999999999986655443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=100.00  E-value=1.3e-33  Score=261.24  Aligned_cols=121  Identities=18%  Similarity=0.217  Sum_probs=97.3

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++.+.. .+..  +...
T Consensus        89 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~-~~~~--~~~~  165 (464)
T 4dkl_A           89 CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT-KYRQ--GSID  165 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCC-EEET--TEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheee-cccC--CCce
Confidence            45678889999999999999999999999999 678788899999999999999999999977764443 2222  2455


Q ss_pred             eeccCC-------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354          83 CMVSQD-------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ  127 (342)
Q Consensus        83 C~~~~~-------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~  127 (342)
                      |.....       ..|.++.+++.+++|+++++++|++|++.+|++.+....
T Consensus       166 c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~  217 (464)
T 4dkl_A          166 CTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEM  217 (464)
T ss_dssp             CCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHH
T ss_pred             EEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            665422       235667778889999999999999999999876554443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=100.00  E-value=2.5e-33  Score=249.80  Aligned_cols=210  Identities=21%  Similarity=0.424  Sum_probs=168.3

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeec-ccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNV-DYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK   82 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~-~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~   82 (342)
                      +.+.+++..++..+|++++++||+|||+||++| +|+ .++++++..+++++|++++++++|++++|..+....  ....
T Consensus       111 C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~  187 (349)
T 1u19_A          111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG--MQCS  187 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSC-CCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEET--TTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccce-eeccchhHHHHHHHHHHHHHHHHHHHHheeeeeccC--Ccee
Confidence            345678888899999999999999999999994 554 489999999999999999999999998887543322  2556


Q ss_pred             eeccC--------CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccc
Q psy4354          83 CMVSQ--------DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKR  154 (342)
Q Consensus        83 C~~~~--------~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
                      |...+        ...|.++..++.+++|+++++++|.+|++.+|++.++.                             
T Consensus       188 C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~-----------------------------  238 (349)
T 1u19_A          188 CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ-----------------------------  238 (349)
T ss_dssp             EECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS-----------------------------
T ss_pred             ecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------
Confidence            76542        23466677778889999999999999998877532100                             


Q ss_pred             ccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcc
Q psy4354         155 KFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNE  234 (342)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                                                                                                      
T Consensus       239 --------------------------------------------------------------------------------  238 (349)
T 1u19_A          239 --------------------------------------------------------------------------------  238 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccc
Q psy4354         235 CVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNP  314 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP  314 (342)
                                    +..+...++++|++|++++++++|++||+|+.+..++..+.+..........+..++.++|+++||
T Consensus       239 --------------~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP  304 (349)
T 1u19_A          239 --------------QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNP  304 (349)
T ss_dssp             --------------CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHH
T ss_pred             --------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhH
Confidence                          000113466789999999999999999999999988877765555566677788899999999999


Q ss_pred             hhhhccChhHHHHHHHHHhcCCCCC
Q psy4354         315 VIYTVFSPEFRQAFKRILCGSPNRG  339 (342)
Q Consensus       315 iiY~~~n~~fR~~~~~ll~~~~~~~  339 (342)
                      +||+++|++||+++++++||++++.
T Consensus       305 iiY~~~~~~fR~~~~~~~~c~~~~~  329 (349)
T 1u19_A          305 VIYIMMNKQFRNCMVTTLCCGKNPL  329 (349)
T ss_dssp             HHHHHTCHHHHHHHHHHHTSSCCCT
T ss_pred             HHHHHHhHHHHHHHHHHhcccCCCC
Confidence            9999999999999999998776543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.98  E-value=1.4e-32  Score=257.81  Aligned_cols=235  Identities=28%  Similarity=0.545  Sum_probs=166.4

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHh-cccCCCccccc---
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL-GWKDPEYMDRI---   78 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~-~~~~~~~~~~~---   78 (342)
                      +-+.+++..++..+|++++++||+|||+||++ .+|+..++++++.++++++|+++++++++|++ .|.........   
T Consensus       255 C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~  334 (514)
T 3sn6_R          255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCY  334 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCccccee
Confidence            45667888899999999999999999999999 67778899999999999999999998876664 44433221110   


Q ss_pred             Cccce-eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccc
Q psy4354          79 NQQKC-MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFF  157 (342)
Q Consensus        79 ~~~~C-~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
                      ....| .......|.++..++.+++|+++++++|.+|++.+|++.++...........                      
T Consensus       335 ~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~----------------------  392 (514)
T 3sn6_R          335 AEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQ----------------------  392 (514)
T ss_dssp             HSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------
T ss_pred             ecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc----------------------
Confidence            01122 2234567888888999999999999999999999999887766521100000                      


Q ss_pred             cccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccccc
Q psy4354         158 RIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQ  237 (342)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (342)
                                                                                                  +..+
T Consensus       393 ----------------------------------------------------------------------------~~~~  396 (514)
T 3sn6_R          393 ----------------------------------------------------------------------------NLSQ  396 (514)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0000


Q ss_pred             cccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhh
Q psy4354         238 VKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIY  317 (342)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY  317 (342)
                      ...........++..+..++++|+++++++++++|++||+|+.++.++..+.+. .....+..+..+|.++|+++||+||
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY  475 (514)
T 3sn6_R          397 VEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIY  475 (514)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHhhhHHhh
Confidence            000000000011112233678999999999999999999999999988777543 3456677888899999999999999


Q ss_pred             hccChhHHHHHHHHHhcCCCC
Q psy4354         318 TVFSPEFRQAFKRILCGSPNR  338 (342)
Q Consensus       318 ~~~n~~fR~~~~~ll~~~~~~  338 (342)
                      + ++++||++++++|||+++.
T Consensus       476 ~-~~~~fR~~~~~~l~~~~~~  495 (514)
T 3sn6_R          476 C-RSPDFRIAFQELLCLRRSS  495 (514)
T ss_dssp             T-TCHHHHHHHHTTCC-----
T ss_pred             c-CCHHHHHHHHHHhCcCccc
Confidence            9 9999999999999877654

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.97  E-value=3.8e-32  Score=236.96  Aligned_cols=200  Identities=22%  Similarity=0.302  Sum_probs=154.6

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +-+.+++...+..+|++++++||+|||+||++|.+.....++++..+++++|++++++++|+.+.+.............+
T Consensus        82 c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~  161 (296)
T 2lnl_A           82 CKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYE  161 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCS
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeee
Confidence            34567888899999999999999999999999433344455677888889999999999988887776544332111111


Q ss_pred             ec-----cCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccccc
Q psy4354          84 MV-----SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFR  158 (342)
Q Consensus        84 ~~-----~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      ..     .....+.++...+.+++|+.++.++|.++.+.++++                                     
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~-------------------------------------  204 (296)
T 2lnl_A          162 VLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA-------------------------------------  204 (296)
T ss_dssp             CCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-------------------------------------
T ss_pred             eccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence            11     123356666677889999999999999887544321                                     


Q ss_pred             ccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccccc
Q psy4354         159 IKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV  238 (342)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (296)
T 2lnl_A          205 --------------------------------------------------------------------------------  204 (296)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCc---------hhHHHHHHHHHHhhc
Q psy4354         239 KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYI---------SDYLASFFLWLGYFN  309 (342)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~~n  309 (342)
                                     ..++++|++|++++++++|++||+|+.+..++..+.+....         ......++.+|+++|
T Consensus       205 ---------------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n  269 (296)
T 2lnl_A          205 ---------------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLH  269 (296)
T ss_dssp             ---------------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGG
T ss_pred             ---------------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHH
Confidence                           11456799999999999999999999999998777643221         234566788999999


Q ss_pred             ccccchhhhccChhHHHHHHHHHhcC
Q psy4354         310 STLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       310 s~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      |++||+||+++|++||+++++++||+
T Consensus       270 s~~NPiIY~~~~~~fR~~~~~ll~cr  295 (296)
T 2lnl_A          270 SCLNPIIYAFIGQNFRHGFLKILAMH  295 (296)
T ss_dssp             GTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            99999999999999999999999985

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.97  E-value=2.1e-31  Score=238.87  Aligned_cols=210  Identities=23%  Similarity=0.381  Sum_probs=160.9

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +.+.+++..++..+|++++++||+|||+||++|.. ..++++++.++++++|++++++++|++ .+.......  +...|
T Consensus       105 C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~-~~~~~~~~~~~i~~~W~~s~~~~~p~~-~~~~~~~~~--~~~~C  180 (364)
T 2ks9_A          105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ-PRLSATATKVVICVIWVLALLLAFPQG-YYSTTETMP--SRVVC  180 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-TSCCHHHHHHHHHHHHHHHHHHHTTTT-TTSCCCBCT--TCSSB
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccchHHHHHHHHHHHHHHHHhHHH-HHhhheecC--CCCEE
Confidence            45667888899999999999999999999999533 237899999999999999999998554 454433322  25567


Q ss_pred             eccCC--------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          84 MVSQD--------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        84 ~~~~~--------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                      ...+.        ..|.+...++.+++|+++++++|.+|++.++++.+...                             
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~-----------------------------  231 (364)
T 2ks9_A          181 MIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGD-----------------------------  231 (364)
T ss_dssp             CCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSS-----------------------------
T ss_pred             eecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------------------------
Confidence            65321        25666777888999999999999999988875210000                             


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (364)
T 2ks9_A          232 --------------------------------------------------------------------------------  231 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC---CchhHHHHHHHHHHhhcccc
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC---YISDYLASFFLWLGYFNSTL  312 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~v  312 (342)
                                 .....+.+.++++|++|++++++++|++||+|+.+..++..+.++.   .....+..+..++.++|+++
T Consensus       232 -----------~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~  300 (364)
T 2ks9_A          232 -----------SSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMY  300 (364)
T ss_dssp             -----------SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------cchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence                       0000112446789999999999999999999999998887765432   23445667788899999999


Q ss_pred             cchhhhccChhHHHHHHHHHhcCCC
Q psy4354         313 NPVIYTVFSPEFRQAFKRILCGSPN  337 (342)
Q Consensus       313 NPiiY~~~n~~fR~~~~~ll~~~~~  337 (342)
                      ||+||+++|++||++++++++|+++
T Consensus       301 NPiiY~~~~~~fR~~~~~~~~~~~~  325 (364)
T 2ks9_A          301 NPIIYCCLNDRFRLGFKHAFRCCPF  325 (364)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcCC
Confidence            9999999999999999999976553

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.04  E-value=3.8e-11  Score=70.20  Aligned_cols=38  Identities=34%  Similarity=0.606  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcC
Q psy4354         298 LASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGS  335 (342)
Q Consensus       298 ~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~  335 (342)
                      ++.++.+++++||++||+||++++++||++++++++|.
T Consensus         2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~   39 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA   39 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence            35678899999999999999999999999999988653

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.45  E-value=1.2e-08  Score=56.33  Aligned_cols=30  Identities=27%  Similarity=0.657  Sum_probs=26.1

Q ss_pred             HhhHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q psy4354         258 ERKAAKTLAIITGAFVICWLPFFMMALLLP  287 (342)
Q Consensus       258 ~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~  287 (342)
                      |+|++|++++++++|++||+||.+..++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            468899999999999999999999876643

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.27  E-value=1.5e-08  Score=55.72  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=24.9

Q ss_pred             hHHHHhhheeeceeEEEee-cccccccchh
Q psy4354          17 MLGYSTVIMFVDKYWAVTN-VDYIHTRNAN   45 (342)
Q Consensus        17 ~S~~~l~~IaidRY~aI~~-~~y~~~~t~r   45 (342)
                      +|++++++||+|||+||++ .+|...++++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            6899999999999999999 6777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	4e-19

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.6 bits (208), Expect = 4e-19
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 256 KRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV 315
           K E++  + + I+  AF+ICWLP+  +A  +   Q         +   +    ++  NPV
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 316 IYTVFSPEFRQAFKRILCGSPNR 338
           IY + + +FR      LC   N 
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNP 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.96

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.1e-30  Score=228.74  Aligned_cols=212  Identities=21%  Similarity=0.411  Sum_probs=169.4

Q ss_pred             hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354           4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC   83 (342)
Q Consensus         4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C   83 (342)
                      +.+.+++..++..+|++++++|++|||++|++|.+....++++..+.++++|.+++++.+|+.+++........  ...|
T Consensus       110 c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  187 (348)
T d1u19a_         110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGM--QCSC  187 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETT--TTEE
T ss_pred             hhhhhhccccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheecccccccceeccCCc--cccc
Confidence            45677888889999999999999999999999545566788888899999999999999988887765444333  3344


Q ss_pred             ecc--------CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354          84 MVS--------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK  155 (342)
Q Consensus        84 ~~~--------~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
                      ...        ....+.++..++.+++|+++++++|.+|.+++|++.+                                
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~--------------------------------  235 (348)
T d1u19a_         188 GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA--------------------------------  235 (348)
T ss_dssp             ECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCC--------------------------------
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------------------------------
Confidence            332        2234666777788899999999999999877765210                                


Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354         156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC  235 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (348)
T d1u19a_         236 --------------------------------------------------------------------------------  235 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccch
Q psy4354         236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV  315 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPi  315 (342)
                                 ..+......++|+|++|++++++++|++||+|+.++.++....+..........+..+++++|+++||+
T Consensus       236 -----------~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPi  304 (348)
T d1u19a_         236 -----------QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV  304 (348)
T ss_dssp             -----------SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHH
T ss_pred             -----------ccchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence                       001112245678999999999999999999999999988877777767777888899999999999999


Q ss_pred             hhhccChhHHHHHHHHHhcCCCCCC
Q psy4354         316 IYTVFSPEFRQAFKRILCGSPNRGR  340 (342)
Q Consensus       316 iY~~~n~~fR~~~~~ll~~~~~~~~  340 (342)
                      ||+++|++||++++++|||++++..
T Consensus       305 IY~~~~~~fR~~~~~~l~c~~~~~~  329 (348)
T d1u19a_         305 IYIMMNKQFRNCMVTTLCCGKNPLG  329 (348)
T ss_dssp             HHHHTCHHHHHHHHHHHTSSCCCTT
T ss_pred             HHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999988776543