Psyllid ID: psy4361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MEKQEKKKKKKRKKKEKVYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYADS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHcEEcccccEEEcccccccHHHEEcHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEKQEKKKKKKRKKKEKVYICVMCIVLresmccgpggksgrrrydrykkitplvykqhvpnvsentltasghsegrisrddkrfrdlipnynqdiifkddegtgaDRLMTQLKnkmphyads
Flexible Loop (DISEMBL)
mekqekkkkkkrkkkekvyICVMCivlresmccgpggksgrrrydRYKKITPlvykqhvpnvsentltasghsegrisrddkrfRDLIPNYnqdiifkddegtgADRLMTqlknkmphyads
Low Complexity Region (SEG)
MekqekkkkkkrkkkekVYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYADS
Disordered region (IsUnstruct)
****************KVYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVP***********************FRDLIPNYNQDIIFK************************
Disordered Region (DISOPRED)
****************KVYICVMCIVLRESM*********************LVYKQHVPN**********************FRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYA**
Disordered Region (DISEMBL)
****************KVYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYADS
Disordered Region (DISPRO)
******KKKKKRKKKEKVYICVMCIVLRESMCCGPGG***RRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYADS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKQEKKKKKKRKKKEKVYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q91035	425	Sonic hedgehog protein OS	yes	N/A	0.729	0.209	0.569	3e-26
Q91610	396	Desert hedgehog protein A	N/A	N/A	0.762	0.234	0.591	8e-26
O43323	396	Desert hedgehog protein O	yes	N/A	0.639	0.196	0.662	1e-25
Q90385	432	Sonic hedgehog protein OS	N/A	N/A	0.729	0.206	0.569	2e-25
Q90419	416	Tiggy-winkle hedgehog pro	yes	N/A	0.868	0.254	0.518	2e-25
Q61488	396	Desert hedgehog protein O	yes	N/A	0.639	0.196	0.65	2e-25
Q62226	437	Sonic hedgehog protein OS	no	N/A	0.647	0.180	0.629	3e-25
Q15465	462	Sonic hedgehog protein OS	no	N/A	0.647	0.170	0.641	3e-25
Q63673	437	Sonic hedgehog protein OS	no	N/A	0.647	0.180	0.617	1e-24
Q92000	444	Sonic hedgehog protein OS	N/A	N/A	0.729	0.200	0.559	7e-24

>sp|Q91035|SHH_CHICK Sonic hedgehog protein OS=Gallus gallus GN=SHH PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 4/93 (4%)

Query: 19  YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
           +IC +  ++   + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+
Sbjct: 15  FICAL--LVSSGLTCGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70

Query: 79  RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
           R+ +RF++L PNYN DIIFKD+E TGADRLMTQ
Sbjct: 71  RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.
Gallus gallus (taxid: 9031)

>sp|Q91610|DHHA_XENLA Desert hedgehog protein A OS=Xenopus laevis GN=dhh-a PE=2 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 5/98 (5%)

Query: 17  KVYICVMC--IVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHS 73
           ++ I  +C  ++L    CCGPG G  GRRRY R  K+ PL YKQ VPNV E TL ASG S
Sbjct: 5   RIVILAICCGLLLVPVRCCGPGRGPVGRRRYMR--KLVPLHYKQFVPNVPEKTLGASGKS 62

Query: 74  EGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
           EG+I R  +RF +L+PNYN DIIFKD+E TGADRLMT+
Sbjct: 63  EGKIHRGSERFIELVPNYNPDIIFKDEEKTGADRLMTE 100

Signal involved in the early induction and patterning of anterodorsal ectoderm, nervous system and somites. Induces ectopic cement gland formation in embryos.

Xenopus laevis (taxid: 8355)

>sp|O43323|DHH_HUMAN Desert hedgehog protein OS=Homo sapiens GN=DHH PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)

Query: 33  CGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
           CGPG G  GRRRY R K++ PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNY
Sbjct: 23  CGPGRGPVGRRRYAR-KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNY 81

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E +GADRLMT+
Sbjct: 82  NPDIIFKDEENSGADRLMTE 101

Intercellular signal essential for a variety of patterning events during development. May function as a spermatocyte survival factor in the testes. Essential for testes development.

Homo sapiens (taxid: 9606)

>sp|Q90385|SHH_CYNPY Sonic hedgehog protein OS=Cynops pyrrhogaster GN=SHH PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 4/93 (4%)

Query: 19  YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
           +IC +  ++   + CGPG   G R+  R+KK+TPL YKQ  PNV E TL ASG  EG+I+
Sbjct: 15  FICAL--LVPSGLSCGPGRGIGTRK--RFKKLTPLAYKQFTPNVPEKTLGASGRYEGKIT 70

Query: 79  RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
           R+ +RF++L PNYN DIIFKD+E TGADRLMTQ
Sbjct: 71  RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103

Intercellular signal essential for a variety of patterning events during development and metamorphosis. Involved in limb formation, patterning of the central nervous system and ventral somite differentiation. Induces ectopic cement gland formation in embryos. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO.

Cynops pyrrhogaster (taxid: 8330)

>sp|Q90419|TWHH_DANRE Tiggy-winkle hedgehog protein OS=Danio rerio GN=shhb PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 4/110 (3%)

Query: 15  KEKVYICVMCIVLRE-SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHS 73
           K+   +C + ++L    + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  
Sbjct: 8   KQFALLCFISLLLTPCGLACGPGRGYGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGKY 65

Query: 74  EGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS 122
           EG+I+R+ +RF++LIPNYN DIIFKD+E T ADRLMT+  K+K+   A S
Sbjct: 66  EGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTKRCKDKLNSLAIS 115

Intercellular signal essential for a variety of patterning events during development. Involved in dorso-ventral patterning of the brain and in early patterning of the developing eyes.

Danio rerio (taxid: 7955)

>sp|Q61488|DHH_MOUSE Desert hedgehog protein OS=Mus musculus GN=Dhh PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 2/80 (2%)

Query: 33  CGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
           CGPG G  GRRRY R K++ PL+YKQ VP++ E TL ASG +EGR++R  +RFRDL+PNY
Sbjct: 23  CGPGRGPVGRRRYVR-KQLVPLLYKQFVPSMPERTLGASGPAEGRVTRGSERFRDLVPNY 81

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E +GADRLMT+
Sbjct: 82  NPDIIFKDEENSGADRLMTE 101

Intercellular signal essential for a variety of patterning events during development. May function as a spermatocyte survival factor in the testes. Essential for testes development.

Mus musculus (taxid: 10090)

>sp|Q62226|SHH_MOUSE Sonic hedgehog protein OS=Mus musculus GN=Shh PE=1 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 2/81 (2%)

Query: 31  MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
           + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PN
Sbjct: 23  LACGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPN 80

Query: 91  YNQDIIFKDDEGTGADRLMTQ 111
           YN DIIFKD+E TGADRLMTQ
Sbjct: 81  YNPDIIFKDEENTGADRLMTQ 101

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Mus musculus (taxid: 10090)

>sp|Q15465|SHH_HUMAN Sonic hedgehog protein OS=Homo sapiens GN=SHH PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 64/81 (79%), Gaps = 2/81 (2%)

Query: 31  MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
           + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR+ +RF++L PN
Sbjct: 22  LACGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPN 79

Query: 91  YNQDIIFKDDEGTGADRLMTQ 111
           YN DIIFKD+E TGADRLMTQ
Sbjct: 80  YNPDIIFKDEENTGADRLMTQ 100

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Homo sapiens (taxid: 9606)

>sp|Q63673|SHH_RAT Sonic hedgehog protein OS=Rattus norvegicus GN=Shh PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 64/81 (79%), Gaps = 2/81 (2%)

Query: 31  MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
           + CGPG   G+R++   KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PN
Sbjct: 23  LACGPGRGFGKRQHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPN 80

Query: 91  YNQDIIFKDDEGTGADRLMTQ 111
           YN DIIFKD+E TGADRLMTQ
Sbjct: 81  YNPDIIFKDEENTGADRLMTQ 101

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Rattus norvegicus (taxid: 10116)

>sp|Q92000|SHH_XENLA Sonic hedgehog protein OS=Xenopus laevis GN=shh PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 4/93 (4%)

Query: 19  YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
           +IC +  V    + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+
Sbjct: 13  FICTL--VTPPGLACGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 68

Query: 79  RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
           R+   F++L PNYN DI+FKD+E TGADRLMTQ
Sbjct: 69  RNSDCFKELTPNYNPDIMFKDEESTGADRLMTQ 101

Intercellular signal essential for a variety of patterning events during development and metamorphosis. Involved in limb formation, patterning of the central nervous system and ventral somite differentiation. Induces ectopic cement gland formation in embryos. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
322791144	147	hypothetical protein SINV_12236 [Solenop	0.844	0.700	0.562	4e-28
332019846	216	Sonic hedgehog protein [Acromyrmex echin	0.655	0.370	0.719	4e-28
321454675	570	putative signaling protein hedgehog [Dap	0.655	0.140	0.695	2e-27
294610354	548	hedgehog protein [Daphnia magna]	0.655	0.145	0.695	6e-27
30961831	421	hedgehog, partial [Artemia franciscana]	0.573	0.166	0.763	8e-26
328778280	375	PREDICTED: sonic hedgehog protein A-like	0.532	0.173	0.815	8e-26
270002351	114	hypothetical protein TcasGA2_TC001363 [T	0.549	0.587	0.776	1e-25
345494261	424	PREDICTED: sonic hedgehog protein-like [	0.524	0.150	0.828	1e-25
307206339	167	Sonic hedgehog protein [Harpegnathos sal	0.532	0.389	0.815	2e-25
167234445	392	hedgehog precursor [Tribolium castaneum]	0.516	0.160	0.809	2e-25

>gi|322791144|gb|EFZ15706.1| hypothetical protein SINV_12236 [Solenopsis invicta]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 9/112 (8%)

Query: 17  KVYICVMCIVLRE-------SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTA 69
           +V++ ++ + L         ++ CGPG  +GRR     +K TPLV+KQHVPNVSENTL A
Sbjct: 31  QVFLLILSLWLPVLDNGGGLALACGPGRGAGRR--PNLRKPTPLVFKQHVPNVSENTLPA 88

Query: 70  SGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQLKNKMPHYAD 121
           SG SEG+ISR D RFRDL+PNYN DIIFKD+EGTGADRLMTQ+  ++  + D
Sbjct: 89  SGLSEGKISRFDSRFRDLVPNYNSDIIFKDEEGTGADRLMTQVNARVLLFKD 140

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019846|gb|EGI60307.1| Sonic hedgehog protein [Acromyrmex echinatior]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 69/82 (84%), Gaps = 2/82 (2%)

Query: 30  SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIP 89
           ++ CGPG  +GRR     +K+TPLV+KQHVPNVSENTL ASG SEGRI+R D RFRDL+P
Sbjct: 48  ALACGPGRGAGRR--PNLRKLTPLVFKQHVPNVSENTLPASGLSEGRITRYDSRFRDLVP 105

Query: 90  NYNQDIIFKDDEGTGADRLMTQ 111
           NYN DIIFKD+EG+GADRLMTQ
Sbjct: 106 NYNTDIIFKDEEGSGADRLMTQ 127

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321454675|gb|EFX65836.1| putative signaling protein hedgehog [Daphnia pulex]

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 2/82 (2%)

Query: 30  SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIP 89
           +  CGPG  + RRR  R  K+TPLV+KQHVPNVSENTL ASG +EG+I+RDD RF+ L+P
Sbjct: 110 ATACGPGRGANRRRSPR--KLTPLVFKQHVPNVSENTLGASGLTEGKITRDDPRFQQLVP 167

Query: 90  NYNQDIIFKDDEGTGADRLMTQ 111
           NYN DI+FKD+EGTGADRLMTQ
Sbjct: 168 NYNTDIVFKDEEGTGADRLMTQ 189

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294610354|dbj|BAJ05335.1| hedgehog protein [Daphnia magna]

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 2/82 (2%)

Query: 30  SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIP 89
           +  CGPG  + RRR  R  K+TPLV+KQHVPNVSENTL ASG +EG+I+RDD RF+ L+P
Sbjct: 88  ATACGPGRGANRRRSPR--KLTPLVFKQHVPNVSENTLGASGLTEGKITRDDPRFQQLVP 145

Query: 90  NYNQDIIFKDDEGTGADRLMTQ 111
           NYN DI+FKD+EGTGADRLMTQ
Sbjct: 146 NYNTDIVFKDEEGTGADRLMTQ 167

Source: Daphnia magna

Species: Daphnia magna

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|30961831|gb|AAP38182.1| hedgehog, partial [Artemia franciscana]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/72 (76%), Positives = 64/72 (88%), Gaps = 2/72 (2%)

Query: 40  GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
           GRRR  R  K+TPLV+KQH+PN+SENTL ASG SEG+I+RDD RF+DL+PNYN DIIFKD
Sbjct: 2   GRRRGPR--KLTPLVFKQHIPNMSENTLGASGLSEGKITRDDPRFKDLVPNYNSDIIFKD 59

Query: 100 DEGTGADRLMTQ 111
           +EGTGADRLMTQ
Sbjct: 60  EEGTGADRLMTQ 71

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778280|ref|XP_001122646.2| PREDICTED: sonic hedgehog protein A-like [Apis mellifera]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 59/65 (90%)

Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           +K+TPLV+KQHVPNVSENTL ASG SEGR+SR D RFRDL+PNYN DIIFKD+EGTGADR
Sbjct: 65  RKLTPLVFKQHVPNVSENTLPASGLSEGRVSRHDSRFRDLVPNYNADIIFKDEEGTGADR 124

Query: 108 LMTQL 112
           LMTQ 
Sbjct: 125 LMTQF 129

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002351|gb|EEZ98798.1| hypothetical protein TcasGA2_TC001363 [Tribolium castaneum]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 62/67 (92%)

Query: 49  KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108
           K+TPLV+KQHVPNV ENTLTASG +EGRI R+D RF+DL+PNYNQDI+FKD+EGTGADRL
Sbjct: 37  KLTPLVFKQHVPNVPENTLTASGLTEGRIGRNDSRFKDLVPNYNQDIVFKDEEGTGADRL 96

Query: 109 MTQLKNK 115
           MTQ++ K
Sbjct: 97  MTQVREK 103

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494261|ref|XP_001605475.2| PREDICTED: sonic hedgehog protein-like [Nasonia vitripennis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/64 (82%), Positives = 60/64 (93%)

Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           +K+TPLV+KQHVPNVSENTL ASG  EGR+SR+DKRFRDL+PNYN DIIFKD+EGTGADR
Sbjct: 31  RKLTPLVFKQHVPNVSENTLPASGLGEGRVSRNDKRFRDLVPNYNVDIIFKDEEGTGADR 90

Query: 108 LMTQ 111
           LMTQ
Sbjct: 91  LMTQ 94

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206339|gb|EFN84396.1| Sonic hedgehog protein [Harpegnathos saltator]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           +K+TPLV+KQHVPNVSENTL ASG SEGR+SRDD +FRDL+PNYN DIIFKD+EGTGADR
Sbjct: 68  RKLTPLVFKQHVPNVSENTLPASGLSEGRVSRDDSKFRDLVPNYNSDIIFKDEEGTGADR 127

Query: 108 LMTQL 112
           LMTQ+
Sbjct: 128 LMTQV 132

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167234445|ref|NP_001107837.1| hedgehog precursor [Tribolium castaneum]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 49  KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108
           K+TPLV+KQHVPNV ENTLTASG +EGRI R+D RF+DL+PNYNQDI+FKD+EGTGADRL
Sbjct: 37  KLTPLVFKQHVPNVPENTLTASGLTEGRIGRNDSRFKDLVPNYNQDIVFKDEEGTGADRL 96

Query: 109 MTQ 111
           MTQ
Sbjct: 97  MTQ 99

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
UNIPROTKB|F1NY81	358	SHH "Sonic hedgehog protein" [	0.778	0.265	0.551	2.2e-25
UNIPROTKB|F1MFP2	414	DHH "Hedgehog protein" [Bos ta	0.762	0.224	0.578	3.6e-25
UNIPROTKB|E2QTF1	390	DHH "Uncharacterized protein"	0.762	0.238	0.578	3.6e-25
UNIPROTKB|F1SJ10	400	DHH "Hedgehog protein" [Sus sc	0.762	0.232	0.578	3.6e-25
UNIPROTKB|O43323	396	DHH "Desert hedgehog protein"	0.745	0.229	0.580	4.6e-25
MGI|MGI:94891	396	Dhh "desert hedgehog" [Mus mus	0.745	0.229	0.569	7.6e-25
UNIPROTKB|J9NYK0	461	SHH "Hedgehog protein" [Canis	0.778	0.206	0.561	1e-24
UNIPROTKB|F1P3J4	425	SHH "Hedgehog protein" [Gallus	0.770	0.221	0.555	1.2e-24
UNIPROTKB|Q91035	425	SHH "Sonic hedgehog protein" [	0.770	0.221	0.555	1.2e-24
ZFIN|ZDB-GENE-980526-166	418	shha "sonic hedgehog a" [Danio	0.836	0.244	0.547	1.4e-24

UNIPROTKB|F1NY81 SHH "Sonic hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query:    20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
             +C + +++   + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+R
Sbjct:     8 MCCLALLVSSGLTCGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITR 65

Query:    80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKM 116
             + +RF++L PNYN DIIFKD+E TGADRLMTQ  K+K+
Sbjct:    66 NSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKL 103

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|F1MFP2 DHH "Hedgehog protein" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 55/95 (57%), Positives = 72/95 (75%)

Query:    18 VYICVMCIVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGR 76
             V +C + ++   +  CGPG G  GRRRY R K++ PL+YKQ VP+V E TL ASG +EGR
Sbjct:    12 VPLCCLALLALPAQSCGPGRGPVGRRRYVR-KQLVPLLYKQFVPSVPERTLGASGPAEGR 70

Query:    77 ISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
             ++R  +RFRDL+PNYN DIIFKD+E +GADRLMT+
Sbjct:    71 VTRGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 105

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|E2QTF1 DHH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 55/95 (57%), Positives = 72/95 (75%)

Query:    18 VYICVMCIVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGR 76
             V +C + ++   +  CGPG G  GRRRY R K++ PL+YKQ VP+V E TL ASG +EGR
Sbjct:     8 VPLCCLALLALPAQSCGPGRGPVGRRRYVR-KQLVPLLYKQFVPSVPERTLGASGPAEGR 66

Query:    77 ISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
             ++R  +RFRDL+PNYN DIIFKD+E +GADRLMT+
Sbjct:    67 VARGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 101

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|F1SJ10 DHH "Hedgehog protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 55/95 (57%), Positives = 72/95 (75%)

Query:    18 VYICVMCIVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGR 76
             V +C + ++   +  CGPG G  GRRRY R K++ PL+YKQ VP+V E TL ASG +EGR
Sbjct:    12 VPLCCLALLALPAQSCGPGRGPVGRRRYVR-KQLVPLLYKQFVPSVPERTLGASGPAEGR 70

Query:    77 ISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
             ++R  +RFRDL+PNYN DIIFKD+E +GADRLMT+
Sbjct:    71 VTRGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 105

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|O43323 DHH "Desert hedgehog protein" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 54/93 (58%), Positives = 70/93 (75%)

Query:    20 ICVMCIVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
             +C + ++   +  CGPG G  GRRRY R K++ PL+YKQ VP V E TL ASG +EGR++
Sbjct:    10 LCCLALLALPAQSCGPGRGPVGRRRYAR-KQLVPLLYKQFVPGVPERTLGASGPAEGRVA 68

Query:    79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
             R  +RFRDL+PNYN DIIFKD+E +GADRLMT+
Sbjct:    69 RGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 101

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:94891 Dhh "desert hedgehog" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:    20 ICVMCIVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
             +C + ++   +  CGPG G  GRRRY R K++ PL+YKQ VP++ E TL ASG +EGR++
Sbjct:    10 LCCLALLALSAQSCGPGRGPVGRRRYVR-KQLVPLLYKQFVPSMPERTLGASGPAEGRVT 68

Query:    79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
             R  +RFRDL+PNYN DIIFKD+E +GADRLMT+
Sbjct:    69 RGSERFRDLVPNYNPDIIFKDEENSGADRLMTE 101

GO:0005113 "patched binding" evidence=IPI

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007286 "spermatid development" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0022402 "cell cycle process" evidence=IGI

GO:0030238 "male sex determination" evidence=IGI

GO:0033327 "Leydig cell differentiation" evidence=IGI;IMP

GO:0050810 "regulation of steroid biosynthetic process" evidence=IGI

UNIPROTKB|J9NYK0 SHH "Hedgehog protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 55/98 (56%), Positives = 73/98 (74%)

Query:    20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
             + V  +++   + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR
Sbjct:    11 VLVCALLMCSGLACGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISR 68

Query:    80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKM 116
             + +RF++L PNYN DIIFKD+E TGADRLMTQ  K+K+
Sbjct:    69 NSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKL 106

GO:0008233 "peptidase activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|F1P3J4 SHH "Hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query:    19 YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
             +IC + +     + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+
Sbjct:    15 FICALLV--SSGLTCGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70

Query:    79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKM 116
             R+ +RF++L PNYN DIIFKD+E TGADRLMTQ  K+K+
Sbjct:    71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKL 109

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001708 "cell fate specification" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0002076 "osteoblast development" evidence=IEA

GO:0002320 "lymphoid progenitor cell differentiation" evidence=IEA

GO:0003140 "determination of left/right asymmetry in lateral mesoderm" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005539 "glycosaminoglycan binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007228 "positive regulation of hh target transcription factor activity" evidence=IEA

GO:0007398 "ectoderm development" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007442 "hindgut morphogenesis" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0014858 "positive regulation of skeletal muscle cell proliferation" evidence=IEA

GO:0014902 "myotube differentiation" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021938 "smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation" evidence=IEA

GO:0021978 "telencephalon regionalization" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0030539 "male genitalia development" evidence=IEA

GO:0030878 "thyroid gland development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0033089 "positive regulation of T cell differentiation in thymus" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0042130 "negative regulation of T cell proliferation" evidence=IEA

GO:0042307 "positive regulation of protein import into nucleus" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043369 "CD4-positive or CD8-positive, alpha-beta T cell lineage commitment" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0045059 "positive thymic T cell selection" evidence=IEA

GO:0045060 "negative thymic T cell selection" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045445 "myoblast differentiation" evidence=IEA

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0046639 "negative regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048643 "positive regulation of skeletal muscle tissue development" evidence=IEA

GO:0048645 "organ formation" evidence=IEA

GO:0048663 "neuron fate commitment" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0048714 "positive regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0048859 "formation of anatomical boundary" evidence=IEA

GO:0048864 "stem cell development" evidence=IEA

GO:0051155 "positive regulation of striated muscle cell differentiation" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0060020 "Bergmann glial cell differentiation" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060174 "limb bud formation" evidence=IEA

GO:0060428 "lung epithelium development" evidence=IEA

GO:0060439 "trachea morphogenesis" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0060447 "bud outgrowth involved in lung branching" evidence=IEA

GO:0060458 "right lung development" evidence=IEA

GO:0060459 "left lung development" evidence=IEA

GO:0060463 "lung lobe morphogenesis" evidence=IEA

GO:0060484 "lung-associated mesenchyme development" evidence=IEA

GO:0060516 "primary prostatic bud elongation" evidence=IEA

GO:0060523 "prostate epithelial cord elongation" evidence=IEA

GO:0060662 "salivary gland cavitation" evidence=IEA

GO:0060664 "epithelial cell proliferation involved in salivary gland morphogenesis" evidence=IEA

GO:0060685 "regulation of prostatic bud formation" evidence=IEA

GO:0060769 "positive regulation of epithelial cell proliferation involved in prostate gland development" evidence=IEA

GO:0060782 "regulation of mesenchymal cell proliferation involved in prostate gland development" evidence=IEA

GO:0060783 "mesenchymal smoothened signaling pathway involved in prostate gland development" evidence=IEA

GO:0060840 "artery development" evidence=IEA

GO:0060916 "mesenchymal cell proliferation involved in lung development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0061189 "positive regulation of sclerotome development" evidence=IEA

GO:0071285 "cellular response to lithium ion" evidence=IEA

GO:0072136 "metanephric mesenchymal cell proliferation involved in metanephros development" evidence=IEA

GO:0080125 "multicellular structure septum development" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0090370 "negative regulation of cholesterol efflux" evidence=IEA

GO:2000062 "negative regulation of ureter smooth muscle cell differentiation" evidence=IEA

GO:2000063 "positive regulation of ureter smooth muscle cell differentiation" evidence=IEA

GO:2000357 "negative regulation of kidney smooth muscle cell differentiation" evidence=IEA

GO:2000358 "positive regulation of kidney smooth muscle cell differentiation" evidence=IEA

GO:2000729 "positive regulation of mesenchymal cell proliferation involved in ureter development" evidence=IEA

UNIPROTKB|Q91035 SHH "Sonic hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query:    19 YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
             +IC + +     + CGPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+
Sbjct:    15 FICALLV--SSGLTCGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70

Query:    79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKM 116
             R+ +RF++L PNYN DIIFKD+E TGADRLMTQ  K+K+
Sbjct:    71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKL 109

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005576 "extracellular region" evidence=NAS

GO:0009952 "anterior/posterior pattern specification" evidence=IDA

GO:0016015 "morphogen activity" evidence=NAS

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0009949 "polarity specification of anterior/posterior axis" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IDA

GO:0097190 "apoptotic signaling pathway" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

ZFIN|ZDB-GENE-980526-166 shha "sonic hedgehog a" [Danio rerio (taxid:7955)]

 Score = 281 (104.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 58/106 (54%), Positives = 76/106 (71%)

Query:    18 VYICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRI 77
             V +  + +V+   + CGPG   GRRR+   KK+TPL YKQ +PNV+E TL ASG  EG+I
Sbjct:    10 VSLLTLSLVV-SGLACGPGRGYGRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKI 66

Query:    78 SRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS 122
             +R+ +RF++L PNYN DIIFKD+E TGADRLMTQ  K+K+   A S
Sbjct:    67 TRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAIS 112

GO:0021508 "floor plate formation" evidence=IGI;IMP

GO:0033504 "floor plate development" evidence=IMP

GO:0033339 "pectoral fin development" evidence=IMP

GO:0007154 "cell communication" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0042063 "gliogenesis" evidence=IGI;IMP

GO:0048663 "neuron fate commitment" evidence=IGI

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0048741 "skeletal muscle fiber development" evidence=IGI;IDA

GO:0010002 "cardioblast differentiation" evidence=IMP

GO:0031016 "pancreas development" evidence=IEP;IMP;IDA

GO:0021536 "diencephalon development" evidence=IGI

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IMP

GO:0008015 "blood circulation" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IGI

GO:0043010 "camera-type eye development" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0035143 "caudal fin morphogenesis" evidence=IMP

GO:2000223 "regulation of BMP signaling pathway involved in heart jogging" evidence=IDA

GO:0001947 "heart looping" evidence=IDA

GO:0007368 "determination of left/right symmetry" evidence=IDA

GO:0007417 "central nervous system development" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0032835 "glomerulus development" evidence=IMP

GO:0048618 "post-embryonic foregut morphogenesis" evidence=IMP

GO:0048702 "embryonic neurocranium morphogenesis" evidence=IGI;IMP

GO:0030900 "forebrain development" evidence=IMP

GO:0048795 "swim bladder morphogenesis" evidence=IMP

GO:0030947 "regulation of vascular endothelial growth factor receptor signaling pathway" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0031018 "endocrine pancreas development" evidence=IMP;IDA

GO:0021984 "adenohypophysis development" evidence=IMP;IDA

GO:0001708 "cell fate specification" evidence=IMP

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0001756 "somitogenesis" evidence=IGI;IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IGI;IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0060956 "endocardial cell differentiation" evidence=IGI

GO:0061035 "regulation of cartilage development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0048839 "inner ear development" evidence=IGI

GO:0009952 "anterior/posterior pattern specification" evidence=IGI;IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0042694 "muscle cell fate specification" evidence=IMP

GO:0001839 "neural plate morphogenesis" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0005615 "extracellular space" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29AA9	HH_DROPS	No assigned EC number	0.6333	0.4918	0.1247	yes	N/A
O43323	DHH_HUMAN	No assigned EC number	0.6625	0.6393	0.1969	yes	N/A
Q91035	SHH_CHICK	No assigned EC number	0.5698	0.7295	0.2094	yes	N/A
Q61488	DHH_MOUSE	No assigned EC number	0.65	0.6393	0.1969	yes	N/A
Q90419	TWHH_DANRE	No assigned EC number	0.5181	0.8688	0.2548	yes	N/A
Q02936	HH_DROME	No assigned EC number	0.5108	0.7295	0.1889	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
pfam01085	160	pfam01085, HH_signal, Hedgehog amino-terminal sign	5e-35

>gnl|CDD|201590 pfam01085, HH_signal, Hedgehog amino-terminal signalling domain

 Score =  117 bits (295), Expect = 5e-35
 Identities = 54/78 (69%), Positives = 64/78 (82%), Gaps = 2/78 (2%)

Query: 34  GPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQ 93
           GPG   GRRR+ R  K+TPLVYKQ +PNVSE TL ASG  EG+I+RD +RF++L+PNYN 
Sbjct: 1   GPGRGFGRRRHPR--KLTPLVYKQFIPNVSEKTLGASGRYEGKITRDSERFKELVPNYNP 58

Query: 94  DIIFKDDEGTGADRLMTQ 111
           DIIFKD+E TGADRLMTQ
Sbjct: 59  DIIFKDEEKTGADRLMTQ 76

For the carboxyl Hint module, see pfam01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF01085	160	HH_signal: Hedgehog amino-terminal signalling doma	100.0
KOG3638|consensus	414		97.88

>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH)

Probab=100.00  E-value=8e-55  Score=335.83  Aligned_cols=87  Identities=71%  Similarity=1.134  Sum_probs=57.8

Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhhhHH-
Q psy4361          33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-  111 (122)
Q Consensus        33 CGPGRg~Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRlMTq-  111 (122)
                      ||||||+|+|| ||  +|+||+||||||||||||+||||++||+|+|+|++|++|||||||||||+|||+|||||+||| 
T Consensus         1 Cgpgrg~g~r~-~r--kl~Plv~kq~vPnvsEntlgASG~~eg~I~R~s~rFk~Lv~N~N~dIiFkDEE~tgadR~MTkR   77 (160)
T PF01085_consen    1 CGPGRGYGRRR-PR--KLTPLVFKQHVPNVSENTLGASGPSEGRITRNSPRFKELVPNYNPDIIFKDEEGTGADRLMTKR   77 (160)
T ss_dssp             -SS-TTSSS-S-----------TT-EESSS-TTSTTTT--------TTSGGGGG-EE---TTEEE--TTSSSGGGEE-HH
T ss_pred             CCCCCCCCCCC-CC--ccccceeeccCCCCcccccCCcCccCCcccCCCcccccCeecCCCceEeeccccCCCcccchHH
Confidence            99999999887 88  999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHhhhccccCC
Q psy4361         112 LKNKMPHYADS  122 (122)
Q Consensus       112 CKdKLn~LAis  122 (122)
                      ||||||+|||+
T Consensus        78 ckdkL~~La~~   88 (160)
T PF01085_consen   78 CKDKLNTLAIS   88 (160)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....

>KOG3638|consensus

Probab=97.88  E-value=9.2e-06  Score=69.06  Aligned_cols=90  Identities=23%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             HhhccccccCCCCCC-CCCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCC
Q psy4361          25 IVLRESMCCGPGGKS-GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGT  103 (122)
Q Consensus        25 l~~~~~~~CGPGRg~-Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~T  103 (122)
                      .+......|.+.... +.++..   ...|+.|.+..++++|....+|  .+.++.+.+..+....|  |.|++|++.|..
T Consensus        32 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~a~c~~e~~s~s--~~~~~~wvgg~~~~~~~--~~d~~~~cc~~~  104 (414)
T KOG3638|consen   32 DFSRSAQKPDGFLRDKDIRRYS---PLGPPIYVQQLAECPEEFSSAS--CEKKNQWVGGIFPQDDP--NQDLILKCCEYE  104 (414)
T ss_pred             ccccccccccceeecCCccccc---CCCCccccccccCCCcccCccc--ccccccccCcccccCCC--cchhhhhhhccc
Confidence            445567778887774 333332   4779999999999999999888  77778888888888888  999999999999


Q ss_pred             CchhhhHH-HHhhhccccCC
Q psy4361         104 GADRLMTQ-LKNKMPHYADS  122 (122)
Q Consensus       104 GADRlMTq-CKdKLn~LAis  122 (122)
                      |++ +|++ |+.+++++||+
T Consensus       105 ~l~-~~~d~g~~~v~~ge~~  123 (414)
T KOG3638|consen  105 GLR-FSTDRGVATVSAGEIV  123 (414)
T ss_pred             cch-hhhhhhhccccCccEE
Confidence            999 9999 99999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3m1n_A	175	Crystal Structure Of Human Sonic Hedgehog N-Termina		3e-24
3d1m_A	168	Crystal Structure Of Sonic Hedgehog Bound To The Th		8e-24
3ho5_H	169	Crystal Structure Of Hedgehog-interacting Protein (		6e-23
1vhh_A	162	A Potential Catalytic Site Within The Amino-Termina		4e-22
3k7i_B	187	Crystal Structure Of The E131k Mutant Of The Indian		5e-22
3k7g_B	187	Crystal Structure Of The Indian Hedgehog N-Terminal		5e-22
3k7j_B	187	Crystal Structure Of The D100e Mutant Of The Indian		1e-21
3k7h_B	187	Crystal Structure Of The E95k Mutant Of The Indian		2e-21
2wg4_A	155	Crystal Structure Of The Complex Between Human Hedg		4e-21
3n1r_A	160	Crystal Structure Of Shhn Length = 160		4e-21
2wfx_A	152	Crystal Structure Of The Complex Between Human Hedg		5e-21
3n1f_A	169	Crystal Structure Of Ihhn Bound To Cdofn3 Length =		7e-21
3n1g_B	170	Crystal Structure Of Dhhn Bound To Bocfn3 Length =		7e-21
2wfq_A	165	Crystal Structure Of The N-terminal Signalling Doma		2e-20
2wg3_A	164	Crystal Structure Of The Complex Between Human Hedg		3e-20
2ibg_E	150	Crystal Structure Of Hedgehog Bound To The Fniii Do		6e-18

>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal Domain Length = 175

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 34  GPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQ 93
           GPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR+ +RF++L PNYN 
Sbjct: 3   GPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPNYNP 60
Query: 94  DIIFKDDEGTGADRLMTQ 111
           DIIFKD+E TGADRLMTQ
Sbjct: 61  DIIFKDEENTGADRLMTQ 78

>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third Fniii Domain Of Cdo Length = 168

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 2/79 (2%)
Query: 33  CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
            GPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN
Sbjct: 4   SGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYN 61
Query: 93  QDIIFKDDEGTGADRLMTQ 111
            DIIFKD+E TGADRLMTQ
Sbjct: 62  PDIIFKDEENTGADRLMTQ 80

>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip) And Sonic Hedgehog (shh) Complex Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%), Gaps = 2/72 (2%)
Query: 40  GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
           G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR+ +RF++L PNYN DIIFKD
Sbjct: 3   GKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPNYNPDIIFKD 60
Query: 100 DEGTGADRLMTQ 111
           +E TGADRLMTQ
Sbjct: 61  EENTGADRLMTQ 72

>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal Signalling Domain Of Sonic Hedgehog Length = 162

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADR
Sbjct: 5   KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADR 64
Query: 108 LMTQ 111
           LMTQ
Sbjct: 65  LMTQ 68

>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70
Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGADRLMTQ
Sbjct: 71  NPDIIFKDEENTGADRLMTQ 90

>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70
Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGADRLMTQ
Sbjct: 71  NPDIIFKDEENTGADRLMTQ 90

>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70
Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGA+RLMTQ
Sbjct: 71  NPDIIFKDEENTGAERLMTQ 90

>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70
Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD++ TGADRLMTQ
Sbjct: 71  NPDIIFKDEKNTGADRLMTQ 90

>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog Without Calcium Length = 155

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 1   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 60
Query: 110 TQ 111
           TQ
Sbjct: 61  TQ 62

>pdb|3N1R|A Chain A, Crystal Structure Of Shhn Length = 160

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 5   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 64
Query: 110 TQ 111
           TQ
Sbjct: 65  TQ 66

>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog In The Presence Of Calcium Length = 152

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 1   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 60
Query: 110 TQ 111
           TQ
Sbjct: 61  TQ 62

>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3 Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 34  GPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQ 93
           GPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNYN 
Sbjct: 5   GPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNP 63
Query: 94  DIIFKDDEGTGADRLMTQ 111
           DIIFKD+E TGADRLMTQ
Sbjct: 64  DIIFKDEENTGADRLMTQ 81

>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3 Length = 170

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           K++ PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADR
Sbjct: 19  KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADR 78
Query: 108 LMTQ 111
           LMT+
Sbjct: 79  LMTE 82

>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of Human Dhh Without Calcium Length = 165

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 49  KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108
           ++ PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADRL
Sbjct: 1   QLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRL 60
Query: 109 MTQ 111
           MT+
Sbjct: 61  MTE 63

>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Desert Hedgehog Without Calcium Length = 164

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           + PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADRLM
Sbjct: 2   LVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLM 61
Query: 110 TQ 111
           T+
Sbjct: 62  TE 63

>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of Ihog Length = 150

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 51/62 (82%)
Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           + PLV KQ +PN+SE T +ASG  EG I RD  +F+DL+PNYN+DI+F+D+EGTGADRLM
Sbjct: 1   LYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLM 60
Query: 110 TQ 111
           ++
Sbjct: 61  SK 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3k7i_B	187	IHH, HHG-2, indian hedgehog protein; alpha+beta sa	100.0
3n1g_B	170	Desert hedgehog protein; binding sites, calcium, c	100.0
2ibg_E	150	Protein hedgehog, GH03927P; IHOG, fibronectin type	100.0

>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*

Probab=100.00  E-value=2.7e-50  Score=315.53  Aligned_cols=91  Identities=59%  Similarity=0.944  Sum_probs=74.6

Q ss_pred             ccccCCCCCCC-CCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhh
Q psy4361          30 SMCCGPGGKSG-RRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL  108 (122)
Q Consensus        30 ~~~CGPGRg~G-rrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRl  108 (122)
                      -.+|||||..| +||+||  +||||||||||||+|||||||||++||+|+|+|++|++|||||||||||+|||||||||+
T Consensus        10 ~~~~~~~~~~g~~~~~~r--~~tplv~kq~vPn~sE~tlgASG~~eg~I~r~~~~Fk~Lv~n~n~dIvF~deE~tgadR~   87 (187)
T 3k7i_B           10 HGSCGPGRVVGSRRRPPR--KLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRL   87 (187)
T ss_dssp             ----------------CC--CCCCCCTTCEESSSCTTSTTTTCCCCCCCCTTSGGGGGCEECCCTTEEECCTTSSSGGGE
T ss_pred             CCCCCCccccCCCCCCCC--cccceeecccCCCCCccccCCcCcccCcccCCCcccccccccCCCceEecCccCCCcchh
Confidence            45799999886 555677  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHhhhccccCC
Q psy4361         109 MTQ-LKNKMPHYADS  122 (122)
Q Consensus       109 MTq-CKdKLn~LAis  122 (122)
                      ||| |++|||+||++
T Consensus        88 Mt~Rc~~kL~~La~~  102 (187)
T 3k7i_B           88 MTQRCKDRLNSLAIS  102 (187)
T ss_dssp             ECHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHH
Confidence            999 99999999974

>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B

Probab=100.00  E-value=4e-46  Score=286.18  Aligned_cols=90  Identities=59%  Similarity=0.969  Sum_probs=71.1

Q ss_pred             ccccCCCCCC-CCCCCCCCCc-cccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchh
Q psy4361          30 SMCCGPGGKS-GRRRYDRYKK-ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR  107 (122)
Q Consensus        30 ~~~CGPGRg~-Grrr~pr~~k-ltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADR  107 (122)
                      +.+||||||+ |+||.||  | ||||+|||||||+||+|+||||++||+|+|+|++|++||+||||||||+||||||+||
T Consensus         1 ~~~c~~g~~~~~~~~~~~--~~~~pl~~~~~~P~~~E~t~~asG~~~~~I~r~~~~f~~Lv~~~n~divFrDee~tg~~~   78 (170)
T 3n1g_B            1 GSGPGPGRGPVGRRRYAR--KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADR   78 (170)
T ss_dssp             ---------------------CCCCCCTTCEESSSCTTSTTTTCCCCCCCCTTSHHHHTCEECCCTTEEECCTTSSSGGG
T ss_pred             CCCCCCCCCCCCCCCCCc--cccccccccccCCCCCcccccCcCCccccccCCCHhhhhccccCCCCcEEecccccCCcc
Confidence            4689999999 9999999  8 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHH-HHhhhccccC
Q psy4361         108 LMTQ-LKNKMPHYAD  121 (122)
Q Consensus       108 lMTq-CKdKLn~LAi  121 (122)
                      .||+ |.|+|+.||+
T Consensus        79 ~Md~rl~d~L~~L~~   93 (170)
T 3n1g_B           79 LMTERCKERVNALAI   93 (170)
T ss_dssp             EECHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            9999 9999999985

>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2

Probab=100.00  E-value=3e-41  Score=256.19  Aligned_cols=73  Identities=58%  Similarity=0.911  Sum_probs=63.8

Q ss_pred             cccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhhhHH-HHhhhccccCC
Q psy4361          50 ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS  122 (122)
Q Consensus        50 ltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRlMTq-CKdKLn~LAis  122 (122)
                      ++||+|||||||+||+||||||++||+|+|+|++|++||+||||||||+|||||||||+||| ||+|||+||++
T Consensus         1 ~~pl~~~q~~P~~~E~t~~AsG~~~~~I~r~~~~fk~Lv~n~n~dIvF~dEe~~g~dR~MT~R~k~kL~~La~~   74 (150)
T 2ibg_E            1 LYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYS   74 (150)
T ss_dssp             -CCCCTTCEESSSCTTSTTTTCCCCCCCCTTSGGGGGCEECCCTTEEECC-------CEECHHHHHHHHHHHHH
T ss_pred             CCcccccccCCCCCcccccCcCcccccccCCChhhhcccccCCCCcEecCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999 99999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d3d1ma1	148	d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus mus	4e-34

>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Length = 148

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 4e-34
 Identities = 44/67 (65%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 51  TPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMT 110
           TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLMT
Sbjct: 1   TPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMT 60

Query: 111 Q-LKNKM 116
           Q  K+K+
Sbjct: 61  QRCKDKL 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d3d1ma1	148	Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090	100.0

>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.6e-45  Score=275.05  Aligned_cols=72  Identities=64%  Similarity=0.992  Sum_probs=71.0

Q ss_pred             ccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhhhHH-HHhhhccccCC
Q psy4361          51 TPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS  122 (122)
Q Consensus        51 tPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRlMTq-CKdKLn~LAis  122 (122)
                      |||+|||||||+||+|+||||++||+|+|+|++|++|||||||||+|+|||+|||||+||| ||||||+|||+
T Consensus         1 tpl~~kq~vP~~sE~t~gAsG~~eg~I~R~~~rfk~Lv~n~n~dI~F~dee~tgadR~Mt~Rck~kLn~LA~~   73 (148)
T d3d1ma1           1 TPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAIS   73 (148)
T ss_dssp             CCCCTTCEESSSCTTSTTTTCCCCCCCCTTSSGGGGCEECCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHH
T ss_pred             CCceeeccCCCCCcccccccCCCCCCcCCCChhhhhccccCCCCeeecCCCCCCcchhhhHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999 99999999985