Psyllid ID: psy4378


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
MLPQNGDSIDDVNTEYTLVSTHANETKGMRQYEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLV
cccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mlpqngdsiddvnTEYTLVSTHanetkgmrqyedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlv
mlpqngdsiddvntEYTLVsthanetkgmrqyedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlvkedstlvkedntlv
MLPQNGDSIDDVNTEYTLVSTHANETKGMRQYEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLV
****************************************************************************************************************************************
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MLPQNGDSIDDVNTEYTLVSTHANETKGMRQYEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLV
****************************************************************************************************************************************
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iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPQNGDSIDDVNTEYTLVSTHANETKGMRQYEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query136 2.2.26 [Sep-21-2011]
Q0II65222 Coiled-coil domain-contai yes N/A 0.786 0.481 0.293 8e-10
Q9D9B0223 Coiled-coil domain-contai yes N/A 0.632 0.385 0.302 5e-08
Q6NSX1233 Coiled-coil domain-contai yes N/A 0.617 0.360 0.329 1e-07
Q4R9C9232 Coiled-coil domain-contai N/A N/A 0.617 0.362 0.305 1e-06
>sp|Q0II65|CCD70_BOVIN Coiled-coil domain-containing protein 70 OS=Bos taurus GN=CCDC70 PE=2 SV=1 Back     alignment and function desciption
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 29  MRQYEDNTL--VKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTL 86
           MR +    L   +ED    +E+ T  KE+    + + +  +E+    K+     KED   
Sbjct: 65  MRAFRGEILGFWEEDRLFWEEEKTFWKEEKAFWEMEKSFREEEKAFWKKYRIFWKEDRAF 124

Query: 87  VKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTL 135
            KEDN L + D  L++ED  L +E+  L  E+  L++E+  L ++  TL
Sbjct: 125 WKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEEEKVLWEDKKTL 173





Bos taurus (taxid: 9913)
>sp|Q9D9B0|CCD70_MOUSE Coiled-coil domain-containing protein 70 OS=Mus musculus GN=Ccdc70 PE=2 SV=1 Back     alignment and function description
>sp|Q6NSX1|CCD70_HUMAN Coiled-coil domain-containing protein 70 OS=Homo sapiens GN=CCDC70 PE=2 SV=1 Back     alignment and function description
>sp|Q4R9C9|CCD70_MACFA Coiled-coil domain-containing protein 70 OS=Macaca fascicularis GN=CCDC70 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
158321323 238 hypothetical protein Clos_2301 [Alkaliph 0.75 0.428 0.471 1e-15
221122015200 PREDICTED: uncharacterized protein LOC10 0.735 0.5 0.45 2e-15
156363731108 predicted protein [Nematostella vectensi 0.764 0.962 0.288 2e-14
453084589141 hypothetical protein SEPMUDRAFT_15226, p 0.772 0.744 0.312 2e-12
156311427112 hypothetical protein NEMVEDRAFT_v1g69844 0.794 0.964 0.425 5e-12
420416294 266 hypothetical protein HPNQ4044_0207, part 0.639 0.327 0.563 2e-11
385215864104 cell surface protein [Helicobacter pylor 0.566 0.740 0.220 4e-11
156320482145 hypothetical protein NEMVEDRAFT_v1g78270 0.794 0.744 0.407 5e-11
1854518150 hydrophilic surface protein 1 [Leishmani 0.727 0.66 0.363 1e-10
440632554 336 hypothetical protein GMDG_05522 [Geomyce 0.727 0.294 0.563 1e-10
>gi|158321323|ref|YP_001513830.1| hypothetical protein Clos_2301 [Alkaliphilus oremlandii OhILAs] gi|158141522|gb|ABW19834.1| conserved hypothetical protein [Alkaliphilus oremlandii OhILAs] Back     alignment and taxonomy information
 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 74/104 (71%)

Query: 33  EDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNT 92
           ED +L+K D +L+KED   +K D +L+KED +L+KED + +KED   +KED +L+K D +
Sbjct: 61  EDVSLLKGDVSLLKEDVAFLKGDVSLLKEDVSLLKEDVSFLKEDVAFLKEDVSLLKGDVS 120

Query: 93  LVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLV 136
           L+KED   +K D +L+KED +L+KED   +K D  L+KED +L+
Sbjct: 121 LLKEDVAFLKGDVSLLKEDVSLLKEDVAFLKGDVFLLKEDVSLL 164




Source: Alkaliphilus oremlandii OhILAs

Species: Alkaliphilus oremlandii

Genus: Alkaliphilus

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|221122015|ref|XP_002163596.1| PREDICTED: uncharacterized protein LOC100204099 [Hydra magnipapillata] Back     alignment and taxonomy information
>gi|156363731|ref|XP_001626194.1| predicted protein [Nematostella vectensis] gi|156213062|gb|EDO34094.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|453084589|gb|EMF12633.1| hypothetical protein SEPMUDRAFT_15226, partial [Mycosphaerella populorum SO2202] Back     alignment and taxonomy information
>gi|156311427|ref|XP_001617782.1| hypothetical protein NEMVEDRAFT_v1g69844 [Nematostella vectensis] gi|156195781|gb|EDO25682.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|420416294|ref|ZP_14915404.1| hypothetical protein HPNQ4044_0207, partial [Helicobacter pylori NQ4044] gi|393037142|gb|EJB38179.1| hypothetical protein HPNQ4044_0207, partial [Helicobacter pylori NQ4044] Back     alignment and taxonomy information
>gi|385215864|ref|YP_005775821.1| cell surface protein [Helicobacter pylori F32] gi|317180393|dbj|BAJ58179.1| cell surface protein [Helicobacter pylori F32] Back     alignment and taxonomy information
>gi|156320482|ref|XP_001618189.1| hypothetical protein NEMVEDRAFT_v1g78270 [Nematostella vectensis] gi|156197927|gb|EDO26089.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|1854518|emb|CAB06777.1| hydrophilic surface protein 1 [Leishmania major] Back     alignment and taxonomy information
>gi|440632554|gb|ELR02473.1| hypothetical protein GMDG_05522 [Geomyces destructans 20631-21] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
FB|FBgn0053265 1799 Muc68E "Mucin 68E" [Drosophila 0.963 0.072 0.362 6.7e-13
UNIPROTKB|F8WFJ41062 Kif1b "6-phosphogluconate dehy 0.904 0.115 0.423 3.2e-12
MGI|MGI:1915179223 Ccdc70 "coiled-coil domain con 0.757 0.461 0.300 1.1e-09
UNIPROTKB|F1PJE3230 CCDC70 "Uncharacterized protei 0.757 0.447 0.300 1.7e-09
UNIPROTKB|Q0II65222 CCDC70 "Coiled-coil domain-con 0.757 0.463 0.300 2.4e-09
UNIPROTKB|F1RK32230 CCDC70 "Uncharacterized protei 0.941 0.556 0.270 3e-09
UNIPROTKB|Q6NSX1233 CCDC70 "Coiled-coil domain-con 0.735 0.429 0.3 4.1e-09
RGD|1359251 550 Txndc2 "thioredoxin domain con 0.830 0.205 0.324 1.1e-07
UNIPROTKB|Q5XHX6 550 Txndc2 "Thioredoxin domain-con 0.830 0.205 0.324 1.1e-07
WB|WBGene00019146 1275 H02F09.3 [Caenorhabditis elega 0.75 0.08 0.333 3.2e-07
FB|FBgn0053265 Muc68E "Mucin 68E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 186 (70.5 bits), Expect = 6.7e-13, P = 6.7e-13
 Identities = 50/138 (36%), Positives = 80/138 (57%)

Query:     3 PQNGDSIDD---VNTEYTLVSTHA-NETKGMRQYEDNTLVKEDSTLVK-EDNTLVKEDST 57
             P++  +++D   +  E T V+    N+ +G    ED+T V  D+T  K ED+T V EDST
Sbjct:  1283 PEDDTTVEDSTPIPEESTTVAQDTTNDPEGSTTREDDTTVAIDTTTEKPEDDTTV-EDST 1341

Query:    58 LVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKEDNTLVKEDSTLVKE 117
              + E++T + +++T   E +T  ++D+T+  E  T   ED T V ED+T + E+ST V +
Sbjct:  1342 PIPEESTTIAQETTYDPEGSTTREDDTTVAIETTTEKPEDDTTV-EDSTPIPEESTTVAQ 1400

Query:   118 DNTLVKEDSTLVKEDNTL 135
             D T   E ST  +ED T+
Sbjct:  1401 DTTNDPEGSTTREEDTTV 1418


GO:0005576 "extracellular region" evidence=IEA
GO:0008061 "chitin binding" evidence=IEA
GO:0006030 "chitin metabolic process" evidence=IEA
GO:0031012 "extracellular matrix" evidence=ISM
GO:0005201 "extracellular matrix structural constituent" evidence=ISM
UNIPROTKB|F8WFJ4 Kif1b "6-phosphogluconate dehydrogenase, decarboxylating" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915179 Ccdc70 "coiled-coil domain containing 70" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJE3 CCDC70 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0II65 CCDC70 "Coiled-coil domain-containing protein 70" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK32 CCDC70 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NSX1 CCDC70 "Coiled-coil domain-containing protein 70" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359251 Txndc2 "thioredoxin domain containing 2 (spermatozoa)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XHX6 Txndc2 "Thioredoxin domain-containing protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00019146 H02F09.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00