Psyllid ID: psy4382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MIKEHGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKIDMIPTSQYLK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEcccEEEEEccccccccccccccccccEEEEEEcccccccccccEEccEEEEEEEccccccEEEEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccccccHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEEccccEcccccEEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHccHHHHHHHHcccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MIKEHGVYInmdlpagsVVEFLVGFtnkgkqdftldtldaslrypmdfnfYIQNFSTIIYnrivkpgheatlgysfvpaeavagrpfglsvnlqyrdehnnfFYEGIYNETVNIITLgysfvpaeavagrpfglsvnlqyrdehnnffYEGIYNETVNIieidegldgetFFLYVFLGACVVLLLVIGQHFLYSVGkkrvgtaqskkqtvetgtknskdidydwipkeslnslknltnspkspsvhkidmiptsqylk
Flexible Loop (DISEMBL)
MIKEHGVYinmdlpagSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGkkrvgtaqskkqtvetgtknskdidydwiPKESLNSLknltnspkspsvhkidmiptsqylk
Low Complexity Region (SEG)
MIKEHGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKIDMIPTSQYLK
Disordered region (IsUnstruct)
*****GVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGKKR**********************YDWI*********************************
Disordered Region (DISOPRED)
********INMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH*****************************IDYDWI*********************************
Disordered Region (DISEMBL)
MIKEHGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGK*******************SKDIDYDWIPKESLNSLKNLTNSPKSPSVHKIDMIPTSQYLK
Disordered Region (DISPRO)
*I**HGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVG************TVETGTKNSKDIDYDWIPKESLNSLKN***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKEHGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSPSVHKIDMIPTSQYLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q5R4X4	291	Translocon-associated pro	yes	N/A	0.701	0.621	0.383	2e-41
P43307	286	Translocon-associated pro	yes	N/A	0.662	0.597	0.391	9e-41
P45433	288	Translocon-associated pro	N/A	N/A	0.697	0.625	0.389	3e-40
A6QLP7	286	Translocon-associated pro	yes	N/A	0.662	0.597	0.391	1e-39
Q7TPJ0	319	Translocon-associated pro	no	N/A	0.662	0.536	0.391	2e-39
P16967	286	Translocon-associated pro	yes	N/A	0.662	0.597	0.391	2e-39
Q9CY50	286	Translocon-associated pro	yes	N/A	0.662	0.597	0.387	2e-39
P53815	286	Translocon-associated pro	yes	N/A	0.662	0.597	0.382	5e-38
Q54R45	236	Translocon-associated pro	yes	N/A	0.422	0.461	0.427	5e-17

>sp|Q5R4X4|SSRA_PONAB Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 126/232 (54%), Gaps = 51/232 (21%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct: 94  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV                   
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                      +IE ++GLDGET F+Y+FL A + LL+++G H 
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFL-AGLGLLVIVGLHQ 227

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP 243
           L    K++        Q VE GT +  D+D  WIP+E+LN +        SP
Sbjct: 228 LLESRKRK-----RPVQKVEMGTSSQNDVDMSWIPQETLNQIMQSRRDKASP 274

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.
Pongo abelii (taxid: 9601)

>sp|P43307|SSRA_HUMAN Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 124/222 (55%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct: 94  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV                   
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                      +IE ++GLDGET F+Y+FL A + LL+++G H 
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFL-AGLGLLVIVGLHQ 227

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L    K++        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 228 LLESRKRK-----RPIQKVEMGTSSQNDVDMSWIPQETLNQI 264

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Homo sapiens (taxid: 9606)

>sp|P45433|SSRA_ONCMY Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss GN=ssr1 PE=2 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 122/231 (52%), Gaps = 51/231 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           + PA  +V+FLVGFTNKG QDFT+ +L+AS RYP DF FYIQNF+ +  + +V+P  +A+
Sbjct: 95  EFPANEIVKFLVGFTNKGSQDFTVHSLEASFRYPQDFQFYIQNFTALPLSTVVQPQKQAS 154

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PA+ +AGRPFGL + L Y+D   N F   IYN+TV I                 
Sbjct: 155 FEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQTAIYNQTVTI----------------- 197

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                       +E++EGLDGET F+Y+FL   VVL +      
Sbjct: 198 ----------------------------VELEEGLDGETIFMYIFLTGLVVLAVFGMYQV 229

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKS 242
           L S  +KR          VETGT     +D  WIP+E+LN +   + SPK+
Sbjct: 230 LESRTRKRFPVK------VETGTGGMNGVDISWIPQETLNIMSKASASPKA 274

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Oncorhynchus mykiss (taxid: 8022)

>sp|A6QLP7|SSRA_BOVIN Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct: 94  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV I                 
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTI----------------- 196

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                       IE ++GLDGET F+Y+FL    +L++V     
Sbjct: 197 ----------------------------IEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L S  +KR        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Bos taurus (taxid: 9913)

>sp|Q7TPJ0|SSRA_RAT Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N IV P  +AT
Sbjct: 95  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQAT 154

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV                   
Sbjct: 155 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 195

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                      +IE ++GLDGET F+Y+FL    +L++V     
Sbjct: 196 --------------------------TVIEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 229

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L S  +KR        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 230 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 265

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Rattus norvegicus (taxid: 10116)

>sp|P16967|SSRA_CANFA Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct: 94  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV I                 
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTI----------------- 196

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                       IE ++GLDGET F+Y+FL    +L++V     
Sbjct: 197 ----------------------------IEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L S  +KR        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Canis familiaris (taxid: 9615)

>sp|Q9CY50|SSRA_MOUSE Translocon-associated protein subunit alpha OS=Mus musculus GN=Ssr1 PE=1 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 121/222 (54%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct: 94  DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV                   
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTV------------------- 194

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                      +IE ++GLDGET F+Y+FL    +L++V     
Sbjct: 195 --------------------------TVIEREDGLDGETIFMYMFLAGLGLLVVVGLHQL 228

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L S  +KR        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 229 LESRKRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Mus musculus (taxid: 10090)

>sp|P53815|SSRA_RABIT Translocon-associated protein subunit alpha OS=Oryctolagus cuniculus GN=SSR1 PE=2 SV=1

 Score =  158 bits (399), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 51/222 (22%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           D PA ++V FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N IV P  +AT
Sbjct: 94  DFPANNIVRFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQAT 153

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRP 131
             YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV                   
Sbjct: 154 FEYSFIPAEPMGGRPFGLVINLNYKDFNGNVFQDAVFNQTV------------------- 194

Query: 132 FGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQHF 191
                                      +IE ++GLDG+T F+Y+ L    +L++V     
Sbjct: 195 --------------------------TVIEREDGLDGQTIFMYMSLAGLGLLVVVGLHQL 228

Query: 192 LYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSL 233
           L S  +KR        Q VE GT +  D+D  WIP+E+LN +
Sbjct: 229 LESRNRKR------PIQKVEMGTSSQNDVDMSWIPQETLNQI 264

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q54R45|SSRA_DICDI Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 12  DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
           +  AGSVVE LVGFTN   +   +  + ASL +P DF+ +IQN++   +   V+ GH AT
Sbjct: 52  NFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIAVEKGHHAT 111

Query: 72  LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSF 121
           L Y FVP+E +  R FGL ++L+Y+D   N F +  +N T+NI     SF
Sbjct: 112 LAYRFVPSEYLEPREFGLLISLEYQDGAQN-FTQTFFNSTINITEKETSF 160

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
350410210	275	PREDICTED: translocon-associated protein	0.744	0.698	0.481	6e-58
328793593	314	PREDICTED: translocon-associated protein	0.763	0.627	0.475	1e-57
193669405	271	PREDICTED: translocon-associated protein	0.755	0.719	0.493	2e-57
239788342	271	ACYPI006658 [Acyrthosiphon pisum]	0.755	0.719	0.489	9e-57
383863109	275	PREDICTED: translocon-associated protein	0.713	0.669	0.489	2e-56
380023814	275	PREDICTED: LOW QUALITY PROTEIN: transloc	0.717	0.672	0.493	3e-56
307211436	284	Translocon-associated protein subunit al	0.767	0.697	0.473	4e-56
340719343	418	PREDICTED: translocon-associated protein	0.713	0.440	0.484	5e-56
332023958	263	Translocon-associated protein subunit al	0.713	0.699	0.478	1e-55
118794223	284	AGAP001721-PA [Anopheles gambiae str. PE	0.724	0.658	0.491	5e-55

>gi|350410210|ref|XP_003488981.1| PREDICTED: translocon-associated protein subunit alpha-like [Bombus impatiens]

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 151/239 (63%), Gaps = 47/239 (19%)

Query: 11  MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
           ++LPAG++VEFLVGFTNKG+ DF L++LDAS RY MDFNFYIQNFST++YN+IVKP HEA
Sbjct: 77  LELPAGNLVEFLVGFTNKGESDFILESLDASFRYAMDFNFYIQNFSTVVYNKIVKPKHEA 136

Query: 71  TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGR 130
           TL YSF+P+E +AGRPFG ++NL Y+D +   F E +YNETV I                
Sbjct: 137 TLAYSFIPSENLAGRPFGFNINLNYKDSNGIGFSEAVYNETVQI---------------- 180

Query: 131 PFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH 190
                                        IE+D+GLDGET FLYVFL ACV+L LV GQ 
Sbjct: 181 -----------------------------IELDDGLDGETIFLYVFLAACVILTLVGGQQ 211

Query: 191 FLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPK-SPSVHKI 248
            L S+G+K   ++ +++  VE GT N  ++DYDW+PKE+LN +     +P+ SP   K+
Sbjct: 212 LLSSLGRKS-RSSNTRRTPVEVGTSNPNNVDYDWLPKETLNRINKSPKTPRQSPRQRKV 269

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793593|ref|XP_623753.3| PREDICTED: translocon-associated protein subunit alpha-like [Apis mellifera]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 153/244 (62%), Gaps = 47/244 (19%)

Query: 11  MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
           ++LPAG++VEFLVGFTNKG+ DF L+++DAS RY M+FNFYIQNFST+IYN+IVKP HEA
Sbjct: 77  LELPAGNLVEFLVGFTNKGESDFVLESVDASFRYAMNFNFYIQNFSTVIYNKIVKPKHEA 136

Query: 71  TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGR 130
           TL YSF+P+E +AGRPFG ++NL Y+D +   F E +YNETV I                
Sbjct: 137 TLAYSFIPSENLAGRPFGFNINLNYKDANGISFNEAVYNETVQI---------------- 180

Query: 131 PFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH 190
                                        IE+D+GLDGET FLYVFL ACV+L LV GQ 
Sbjct: 181 -----------------------------IELDDGLDGETIFLYVFLAACVILTLVGGQQ 211

Query: 191 FLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPK-SPSVHKID 249
            L S+G+K   ++ ++K  VE GT N  ++DYDW+PKE+LN +     +P+ SP   K+ 
Sbjct: 212 LLSSLGRKS-RSSSTRKTPVEMGTSNPNNVDYDWLPKETLNRINKSPRTPRQSPRQRKVK 270

Query: 250 MIPT 253
            + T
Sbjct: 271 ELMT 274

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669405|ref|XP_001951923.1| PREDICTED: translocon-associated protein subunit alpha-like [Acyrthosiphon pisum]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 144/243 (59%), Gaps = 48/243 (19%)

Query: 10  NMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHE 69
           +++LPAG + EFLVGFTNKG  D  L+TLDASLRYPMDFNF+IQNF+T++  + + PG +
Sbjct: 74  SIELPAGRLSEFLVGFTNKGSNDLVLETLDASLRYPMDFNFHIQNFTTVLLEKTIPPGSQ 133

Query: 70  ATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAG 129
           ATL                                             GY+F+PA+A AG
Sbjct: 134 ATL---------------------------------------------GYAFIPADAFAG 148

Query: 130 RPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQ 189
           RPFGLS+NL YRD         +YN+TVNIIE++EGLDGET FLYV + A  VLLLV GQ
Sbjct: 149 RPFGLSINLAYRDYEGKQMISKLYNDTVNIIEVEEGLDGETLFLYVLMAAACVLLLVGGQ 208

Query: 190 HFLYSVGKKRVGTA--QSKKQTVETGTKNSKDIDYDWIPKESLNSL-KNLTNSPKSPSVH 246
            FLYSVGKKRVG       +  +ETGTK SK ID DW+PK  LN L K    SPK   V 
Sbjct: 209 QFLYSVGKKRVGGGLPSRTRANLETGTKTSKQIDMDWVPKNVLNHLNKQKAQSPKQKRVK 268

Query: 247 KID 249
           K D
Sbjct: 269 KTD 271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788342|dbj|BAH70858.1| ACYPI006658 [Acyrthosiphon pisum]

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 143/243 (58%), Gaps = 48/243 (19%)

Query: 10  NMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHE 69
           +++LPAG + EFLVGFTNKG  D  L+TLDASLRYPMDFNF+IQNF+T++  + + PG +
Sbjct: 74  SIELPAGRLSEFLVGFTNKGSNDLVLETLDASLRYPMDFNFHIQNFTTVLLEKTIPPGSQ 133

Query: 70  ATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAG 129
           ATL                                             GY+F+PA+A AG
Sbjct: 134 ATL---------------------------------------------GYAFIPADAFAG 148

Query: 130 RPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQ 189
           RPFGLS+NL YRD         +YN+TVNIIE++EGLDGET FLYV + A  VLLLV GQ
Sbjct: 149 RPFGLSINLAYRDYEGKQMISKLYNDTVNIIEVEEGLDGETLFLYVLMAAACVLLLVGGQ 208

Query: 190 HFLYSVGKKRVGTA--QSKKQTVETGTKNSKDIDYDWIPKESLNSL-KNLTNSPKSPSVH 246
            FLYSV KKRVG       +  +ETGTK SK ID DW+PK  LN L K    SPK   V 
Sbjct: 209 QFLYSVSKKRVGGGLPSRTRANLETGTKTSKQIDMDWVPKNVLNHLNKQKAQSPKQKRVK 268

Query: 247 KID 249
           K D
Sbjct: 269 KTD 271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863109|ref|XP_003707025.1| PREDICTED: translocon-associated protein subunit alpha-like [Megachile rotundata]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 145/233 (62%), Gaps = 49/233 (21%)

Query: 11  MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
           ++LPAG++VE LVGF NKG  DF L++LDAS RY MDFNFYIQNFST+ YN+IVKP HEA
Sbjct: 77  LELPAGNLVELLVGFANKGDNDFILESLDASFRYAMDFNFYIQNFSTVAYNKIVKPKHEA 136

Query: 71  TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGR 130
           TL YSF+P+E +AGRPFG ++NL YRD +   F E +YNETV I                
Sbjct: 137 TLAYSFIPSENLAGRPFGFNINLNYRDTNGASFSEAVYNETVQI---------------- 180

Query: 131 PFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH 190
                                        IE+D+GLDGET FLYVFL ACV+L LV GQ 
Sbjct: 181 -----------------------------IELDDGLDGETVFLYVFLAACVILTLVGGQQ 211

Query: 191 FLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP 243
            L S+G+K   ++ ++K  VE GT N  ++DYDW+PKE+LN +     SP++P
Sbjct: 212 LLSSLGRKS-RSSTTRKTPVEMGTSNPNNVDYDWLPKETLNRIN---KSPRTP 260

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023814|ref|XP_003695706.1| PREDICTED: LOW QUALITY PROTEIN: translocon-associated protein subunit alpha-like [Apis florea]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 147/233 (63%), Gaps = 48/233 (20%)

Query: 11  MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
           ++LPAG++VEFLVGFTNKG+ DF L+++DAS RY M+FNFYIQNFST+IYN+IVKP HEA
Sbjct: 77  LELPAGNLVEFLVGFTNKGESDFVLESVDASFRYAMNFNFYIQNFSTVIYNKIVKPKHEA 136

Query: 71  TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGR 130
           TL YSF+P+E +AGRPFG ++NL YRD +   F E +YNETV I                
Sbjct: 137 TLAYSFIPSENLAGRPFGFNINLNYRDANGISFNEAVYNETVQI---------------- 180

Query: 131 PFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH 190
                                        IE+D+GLDGET FLYVFL ACV+L LV GQ 
Sbjct: 181 -----------------------------IELDDGLDGETIFLYVFLAACVILTLVGGQQ 211

Query: 191 FLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP 243
            L S+G+K   ++ ++K  VE GT N  ++DYDW+PKE    L N   SP++P
Sbjct: 212 LLSSLGRKS-RSSSTRKTPVEMGTSNPNNVDYDWLPKEHXIELVN--KSPRTP 261

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211436|gb|EFN87563.1| Translocon-associated protein subunit alpha [Harpegnathos saltator]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/249 (47%), Positives = 149/249 (59%), Gaps = 51/249 (20%)

Query: 5   HGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIV 64
           H     ++LPAG++VEFLVGFTNKG+ DF L++LDAS RY MDFNFYIQNFST  +N+IV
Sbjct: 74  HNALSTLELPAGNIVEFLVGFTNKGEGDFVLESLDASFRYAMDFNFYIQNFSTFTFNKIV 133

Query: 65  KPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPA 124
           KP HEATL YSF+PAE  AGRPFGL+VNL YRD +   + E ++NET+ I          
Sbjct: 134 KPKHEATLAYSFIPAENFAGRPFGLNVNLNYRDINGISYNEAVFNETIQI---------- 183

Query: 125 EAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLL 184
                                              IEID+GLDGET FLYVFL ACV+L 
Sbjct: 184 -----------------------------------IEIDDGLDGETIFLYVFLTACVILT 208

Query: 185 LVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTN-----S 239
           LV GQ  L S+G+K   ++ ++K  VE GT N  ++DYDW+PKE+LN +          S
Sbjct: 209 LVGGQQLLSSLGRKS-RSSTTRKAPVEMGTSNPNNVDYDWLPKETLNRINKSRGMVPRFS 267

Query: 240 PKSPSVHKI 248
            +SP   K+
Sbjct: 268 KQSPGQRKV 276

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719343|ref|XP_003398114.1| PREDICTED: translocon-associated protein subunit alpha-like [Bombus terrestris]

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 145/233 (62%), Gaps = 49/233 (21%)

Query: 11  MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
           ++LPAG++VEFLVGFTNKG+ DF L +LDAS RY M+FNFYIQNFST +YN+IVKP HEA
Sbjct: 220 LELPAGNIVEFLVGFTNKGESDFILQSLDASFRYSMEFNFYIQNFSTAVYNKIVKPKHEA 279

Query: 71  TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGR 130
           TL YSF+P+E + GRPFGL++NL Y+D +   F E +YNETV                  
Sbjct: 280 TLAYSFIPSENLVGRPFGLNINLNYKDSNGIDFSEAVYNETV------------------ 321

Query: 131 PFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQH 190
                                       IIE D+GLDGET FLY FL ACV+L LV GQ 
Sbjct: 322 ---------------------------QIIESDDGLDGETIFLYAFLAACVILTLVGGQQ 354

Query: 191 FLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPKSP 243
            L S+G+K   ++ +++  VE GT N  ++DYDW+PKE+LN    +  SPK+P
Sbjct: 355 LLSSLGRKS-RSSNTRRTPVEMGTSNPNNVDYDWLPKETLN---RINKSPKTP 403

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023958|gb|EGI64176.1| Translocon-associated protein subunit alpha [Acromyrmex echinatior]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 144/230 (62%), Gaps = 46/230 (20%)

Query: 5   HGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIV 64
           H     ++LPAG+++EFLVGF NKG+ DF L++LDAS RY MDFNFYIQNFST  +N++V
Sbjct: 73  HNTLSTLELPAGNIIEFLVGFINKGENDFVLESLDASFRYAMDFNFYIQNFSTFTFNKVV 132

Query: 65  KPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPA 124
           KP HEATL YSF+P+E+ AGRPFGL+VNL Y+D +   + E ++NETV I          
Sbjct: 133 KPKHEATLAYSFIPSESFAGRPFGLNVNLNYKDTNGVSYNEAVFNETVQI---------- 182

Query: 125 EAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLL 184
                                              IEID+GLDGET FLYVFL ACV+L 
Sbjct: 183 -----------------------------------IEIDDGLDGETIFLYVFLAACVILT 207

Query: 185 LVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLK 234
           LV GQ  L S+G+K   ++ ++K  VE GT N  ++DYDW+PKE+LN ++
Sbjct: 208 LVGGQQLLSSLGRKS-RSSTTRKVPVEMGTSNPNNVDYDWLPKETLNRIR 256

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118794223|ref|XP_321364.3| AGAP001721-PA [Anopheles gambiae str. PEST] gi|68697265|emb|CAJ14158.1| signal sequence receptor [Anopheles gambiae] gi|116116191|gb|EAA01377.3| AGAP001721-PA [Anopheles gambiae str. PEST]

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 147/238 (61%), Gaps = 51/238 (21%)

Query: 5   HGVYINMDLPAGSVVEFLVGFTNKGK-QDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRI 63
           H     ++LPAG  VEFLVGFTNKG+ +DF +++++AS RY MDF+++IQNFS + YNR 
Sbjct: 78  HASGSQLELPAGYPVEFLVGFTNKGQFEDFVVESVEASFRYAMDFSYFIQNFSAVPYNRE 137

Query: 64  VKPGHEATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVP 123
           VKPGHEAT+                                              YSF+P
Sbjct: 138 VKPGHEATVA---------------------------------------------YSFLP 152

Query: 124 AEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVL 183
            E+ AGRPFGL++ L YRD   N F E ++NETV I E+DEGLDGETFFLYVFL A V+L
Sbjct: 153 TESFAGRPFGLNIALNYRDGRGNQFSEAVFNETVQITEVDEGLDGETFFLYVFLAAIVIL 212

Query: 184 LLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPK 241
           LLV+GQ FL S GK++  TA  K   VETGT ++KD+DY+WIP E   +LK L NSPK
Sbjct: 213 LLVLGQQFLGSYGKRKRPTAARK--VVETGTASTKDVDYEWIPSE---TLKQLQNSPK 265

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0028327	302	l(1)G0320 "lethal (1) G0320" [	0.403	0.344	0.567	3e-33
UNIPROTKB|F1P4F4	288	SSR1 "Uncharacterized protein"	0.403	0.361	0.557	1.4e-30
UNIPROTKB|F1RW78	285	SSR1 "Uncharacterized protein"	0.403	0.364	0.548	6.2e-30
UNIPROTKB|A6QLP7	286	SSR1 "Translocon-associated pr	0.403	0.363	0.548	6.2e-30
UNIPROTKB|P16967	286	SSR1 "Translocon-associated pr	0.403	0.363	0.548	6.2e-30
RGD|1310961	319	Ssr1 "signal sequence receptor	0.403	0.326	0.548	6.2e-30
UNIPROTKB|C9IZQ1	298	SSR1 "Translocon-associated pr	0.403	0.348	0.538	7.9e-30
UNIPROTKB|E9PAL7	291	SSR1 "Translocon-associated pr	0.403	0.357	0.538	7.9e-30
MGI|MGI:105082	286	Ssr1 "signal sequence receptor	0.403	0.363	0.538	7.9e-30
UNIPROTKB|P43307	286	SSR1 "Translocon-associated pr	0.403	0.363	0.538	7.9e-30

FB|FBgn0028327 l(1)G0320 "lethal (1) G0320" [Drosophila melanogaster (taxid:7227)]

 Score = 342 (125.4 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 59/104 (56%), Positives = 82/104 (78%)

Query:    11 MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEA 70
             +DLP G  VEFL+GFTNKG ++F ++T++AS RYPMDFN++IQNFS + YNR VKPG E+
Sbjct:    85 LDLPGGKPVEFLIGFTNKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFES 144

Query:    71 TLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNI 114
             T+ Y+F+P++  AGRPFGL++ L YRD +   + E ++NETV I
Sbjct:   145 TVSYTFLPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLI 188

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005785 "signal recognition particle receptor complex" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0045169 "fusome" evidence=IDA

UNIPROTKB|F1P4F4 SSR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 58/104 (55%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    96 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 155

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL YRD + N F + ++N+TV II
Sbjct:   156 FEYSFIPAEPMGGRPFGLVINLNYRDANGNMFQDAVFNQTVTII 199

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1RW78 SSR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV II
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTII 197

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|A6QLP7 SSR1 "Translocon-associated protein subunit alpha" [Bos taurus (taxid:9913)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV II
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTII 197

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P16967 SSR1 "Translocon-associated protein subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV II
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTII 197

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1310961 Ssr1 "signal sequence receptor, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N IV P  +AT
Sbjct:    95 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQAT 154

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV +I
Sbjct:   155 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVI 198

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|C9IZQ1 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 56/104 (53%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV +I
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVI 197

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E9PAL7 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 56/104 (53%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV +I
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVI 197

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:105082 Ssr1 "signal sequence receptor, alpha" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 56/104 (53%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV +I
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVI 197

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P43307 SSR1 "Translocon-associated protein subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 56/104 (53%), Positives = 78/104 (75%)

Query:    12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEAT 71
             D PA ++V+FLVGFTNKG +DF +++LDAS RYP D+ FYIQNF+ +  N +V P  +AT
Sbjct:    94 DFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQAT 153

Query:    72 LGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNII 115
               YSF+PAE + GRPFGL +NL Y+D + N F + ++N+TV +I
Sbjct:   154 FEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVI 197

GO:0016021 "integral to membrane" evidence=IEA

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4X4	SSRA_PONAB	No assigned EC number	0.3836	0.7015	0.6219	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	2e-82

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score =  248 bits (634), Expect = 2e-82
 Identities = 106/235 (45%), Positives = 133/235 (56%), Gaps = 54/235 (22%)

Query: 10  NMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHE 69
             D PAG  V+FLVGFTNKG +DF +++L+AS RYP D+ +YIQNF+ + YN +VKP H+
Sbjct: 88  PEDFPAGKPVKFLVGFTNKGSEDFVVESLEASFRYPQDYQYYIQNFTALPYNTVVKPKHQ 147

Query: 70  ATLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAG 129
           AT  YSF+PAE  AGRPFGL +NL YRD       +G                       
Sbjct: 148 ATFEYSFIPAEPFAGRPFGLVINLNYRDA------DG----------------------- 178

Query: 130 RPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFFLYVFLGACVVLLLVIGQ 189
                           N F + ++N+TV I E+DEGLDGETFFLYVFL    +LLLV G 
Sbjct: 179 ----------------NVFQDAVFNQTVTITEVDEGLDGETFFLYVFLAGLGLLLLVGGH 222

Query: 190 HFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTNSPK-SP 243
             L S  +KR       +Q VE GT +  D+DY WIP+E+LN L     SPK SP
Sbjct: 223 QLLESRKRKR------PRQKVEMGTSSDNDVDYSWIPQETLNQLNK--ASPKRSP 269

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	100.0
KOG1631|consensus	261		100.0
KOG1631|consensus	261		98.49
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	97.4
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	97.21
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	95.03
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	92.17
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	91.08
PF04442	152	CtaG_Cox11: Cytochrome c oxidase assembly protein	89.81
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	89.54
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	88.84
COG3175	195	COX11 Cytochrome oxidase assembly factor [Posttran	88.77
PRK05089	188	cytochrome C oxidase assembly protein; Provisional	88.75
PF07760	287	DUF1616: Protein of unknown function (DUF1616); In	84.26
PTZ00128	232	cytochrome c oxidase assembly protein-like; Provis	83.31
PF14874	102	PapD-like: Flagellar-associated PapD-like	82.08
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	82.02

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=100.00  E-value=1.2e-58  Score=426.38  Aligned_cols=188  Identities=49%  Similarity=0.820  Sum_probs=174.1

Q ss_pred             ceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeE
Q psy4382          10 NMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGL   89 (258)
Q Consensus        10 ~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L   89 (258)
                      ..+||||+++++||+|+|+|+.+++|..|+||||+|+||+++|||||+++|++.|+||+++||+|+|.|++.|+||+|+|
T Consensus        92 ~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L  171 (285)
T PF03896_consen   92 TKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRPFGL  171 (285)
T ss_pred             cccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcceEE
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCCceeEEEEecceEEEEeecccccccccccCCCCcccccceecccCCceeeeeeeeeeEEEEecCCCcCce
Q psy4382          90 SVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGE  169 (258)
Q Consensus        90 ~l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~e~~~g~p~g~~i~~~~~d~~g~~y~~~vfN~TVtVvE~~~sfD~q  169 (258)
                      +|+++|+|.+                                             |+.|+.++||+||+|||++++||+|
T Consensus       172 ~i~l~y~d~~---------------------------------------------g~~y~~~~fN~TV~IvE~~~~~D~e  206 (285)
T PF03896_consen  172 VINLIYEDSD---------------------------------------------GNQYQVTVFNGTVTIVEPESGFDPE  206 (285)
T ss_pred             EEEEEEEeCC---------------------------------------------CCEEEEEEecceEEEeecCCCcChh
Confidence            9999999887                                             8899999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhhhccccccCCCCCCcceeeecCCCCCCCCCCccChhhhhhcccCCC--CCCCCCCCc
Q psy4382         170 TFFLYVFLGACVVLLLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTN--SPKSPSVHK  247 (258)
Q Consensus       170 ~iFLYlfL~a~~gll~y~~y~~~~~~~kK~~~~~~~~~~~Ve~gt~~~~~yD~eWIP~~hL~~~~k~~~--sP~~~~~~~  247 (258)
                      +||||+||+|+++|++|++|+++.+..|| |+     +++||+||++.++||+||||+|||++++|.++  ||||||+||
T Consensus       207 ~iFLY~~l~a~~~l~l~~~~~~l~~~~kk-r~-----~~~VE~GT~~~~~~D~eWIp~~~l~~~~k~spk~SPr~r~~~~  280 (285)
T PF03896_consen  207 TIFLYLFLAALGVLGLYFVYQFLPSSKKK-RK-----AKKVETGTSSTNDVDEEWIPKEHLNRPNKKSPKQSPRKRKQKR  280 (285)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcccc-cc-----CCcccCCCCCCCCCCcccCCHHHhhhccCCCCCCChhhhhccc
Confidence            99999999999999999999987644332 22     34799999988899999999999999866665  999999887


Q ss_pred             c
Q psy4382         248 I  248 (258)
Q Consensus       248 ~  248 (258)
                      -
T Consensus       281 ~  281 (285)
T PF03896_consen  281 S  281 (285)
T ss_pred             c
Confidence            3

; GO: 0005783 endoplasmic reticulum

>KOG1631|consensus

Probab=100.00  E-value=1.7e-54  Score=386.47  Aligned_cols=186  Identities=44%  Similarity=0.793  Sum_probs=174.0

Q ss_pred             ecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEEE
Q psy4382          13 LPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVN   92 (258)
Q Consensus        13 l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l~   92 (258)
                      +|+|+++++||||+|+|+++|.|.++++|||+|+||+++|||||+..||+.|+|++|+||+|.|.|++.|+||||||+++
T Consensus        72 ~pagk~vkfLiGftNkG~edfvV~~~eaSfr~P~D~~~~iQNft~~~~N~~Vpp~~qaT~~Y~F~~se~~~grpFgLv~~  151 (261)
T KOG1631|consen   72 FPAGKPVKFLIGFTNKGEEDFVVEYAEASFRYPTDHSYHIQNFTALEYNRSVPPSEQATLPYGFAVSETFAGRPFGLVGN  151 (261)
T ss_pred             CCCCCceEEEEEeccCCceeEEEEEEeeeeecCccHHHHHhhhhhhhccccCCCcceeeeeeeeeehhhcCCCccceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCceeEEEEecceEEEEeecccccccccccCCCCcccccceecccCCceeeeeeeeeeEEEEecCCCcCceeeh
Q psy4382          93 LQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNLQYRDEHNNFFYEGIYNETVNIIEIDEGLDGETFF  172 (258)
Q Consensus        93 l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~e~~~g~p~g~~i~~~~~d~~g~~y~~~vfN~TVtVvE~~~sfD~q~iF  172 (258)
                      +.|+|.+                                             |+.|+.++||+||+|+|.+.+||+|++|
T Consensus       152 i~Y~D~d---------------------------------------------G~~yq~~vyN~TI~VvE~~~gl~GETvF  186 (261)
T KOG1631|consen  152 IIYQDAD---------------------------------------------GNVYQSAVYNQTIEVVEDDSGLSGETVF  186 (261)
T ss_pred             EEEecCC---------------------------------------------CCchhhhhccceEEEEecCCCcccchhH
Confidence            9888777                                             8999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccCCCCCCcceeeecCCCCCCCCCCccChhhhhhcccCCC--CCCCCCCCcc
Q psy4382         173 LYVFLGACVVLLLVIGQHFLYSVGKKRVGTAQSKKQTVETGTKNSKDIDYDWIPKESLNSLKNLTN--SPKSPSVHKI  248 (258)
Q Consensus       173 LYlfL~a~~gll~y~~y~~~~~~~kK~~~~~~~~~~~Ve~gt~~~~~yD~eWIP~~hL~~~~k~~~--sP~~~~~~~~  248 (258)
                      ||++|+|+..++++++++++.+..||+++     +++||+||++.++.|.||||+++|++.+|+|+  |||||++||-
T Consensus       187 L~~lligl~llllv~~~q~L~~~sKk~~~-----~~kVE~GTas~~~vd~eWip~~tl~q~~k~sp~~spkkrK~Kks  259 (261)
T KOG1631|consen  187 LYILLIGLSLLLLVLSQQFLSKLSKKTKK-----RRKVEVGTASKDAVDDEWIPGTTLKQKSKRSPAVSPKKRKSKKS  259 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cceEeecccCcccccccccccHhHHhhccCCcccChhhhhhhcc
Confidence            99999999999999999998755443332     45899999998899999999999999999887  9999999983

>KOG1631|consensus

Probab=98.49  E-value=7.1e-08  Score=87.64  Aligned_cols=168  Identities=23%  Similarity=0.259  Sum_probs=106.5

Q ss_pred             ecCCceeEEEEEEeeCcccCCcceeE-EEEEEEeecCC-----ceeEEEEecceEE---EEeecccccccccccCCCCcc
Q psy4382          64 VKPGHEATLGYSFVPAEAVAGRPFGL-SVNLQYRDEHN-----NFFYEGIYNETVN---IITLGYSFVPAEAVAGRPFGL  134 (258)
Q Consensus        64 V~pg~~at~~Y~F~p~~~~~~~p~~L-~l~l~Y~~~~~-----~~~~~~~~n~~v~---~~t~~~~~~p~e~~~g~p~g~  134 (258)
                      +|.|+...|---|.-.-   ...|.+ .+..++|.-.+     ++|...+||..|.   .+||.|.|+|+|.|+||||||
T Consensus        72 ~pagk~vkfLiGftNkG---~edfvV~~~eaSfr~P~D~~~~iQNft~~~~N~~Vpp~~qaT~~Y~F~~se~~~grpFgL  148 (261)
T KOG1631|consen   72 FPAGKPVKFLIGFTNKG---EEDFVVEYAEASFRYPTDHSYHIQNFTALEYNRSVPPSEQATLPYGFAVSETFAGRPFGL  148 (261)
T ss_pred             CCCCCceEEEEEeccCC---ceeEEEEEEeeeeecCccHHHHHhhhhhhhccccCCCcceeeeeeeeeehhhcCCCccce
Confidence            77777777766664331   111111 11123332221     3356789998887   899999999999999999999


Q ss_pred             cccceecccCCceeeeeeeeeeE--EEEecCCCcCceeehhHH-HHHHHHHHHHHHhhhhhh-hccccccCCCCCCccee
Q psy4382         135 SVNLQYRDEHNNFFYEGIYNETV--NIIEIDEGLDGETFFLYV-FLGACVVLLLVIGQHFLY-SVGKKRVGTAQSKKQTV  210 (258)
Q Consensus       135 ~i~~~~~d~~g~~y~~~vfN~TV--tVvE~~~sfD~q~iFLYl-fL~a~~gll~y~~y~~~~-~~~kK~~~~~~~~~~~V  210 (258)
                      +++++|+     .-...+|++.|  ..+|+-+  |...+-... ||..++++++.+..-... ...+..  +   +.+++
T Consensus       149 v~~i~Y~-----D~dG~~yq~~vyN~TI~VvE--~~~gl~GETvFL~~lligl~llllv~~~q~L~~~s--K---k~~~~  216 (261)
T KOG1631|consen  149 VGNIIYQ-----DADGNVYQSAVYNQTIEVVE--DDSGLSGETVFLYILLIGLSLLLLVLSQQFLSKLS--K---KTKKR  216 (261)
T ss_pred             EEEEEEe-----cCCCCchhhhhccceEEEEe--cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhh--h---ccccc
Confidence            9999997     78899999999  6888888  777777776 565666665554433322 333322  2   24444


Q ss_pred             eecCCCCCCCCCCccChhhhhh--cccCCCCCCCCCCCcc
Q psy4382         211 ETGTKNSKDIDYDWIPKESLNS--LKNLTNSPKSPSVHKI  248 (258)
Q Consensus       211 e~gt~~~~~yD~eWIP~~hL~~--~~k~~~sP~~~~~~~~  248 (258)
                      ..=-.|.  -..+=+-.+.|-+  +++.+++|-+++-||.
T Consensus       217 ~kVE~GT--as~~~vd~eWip~~tl~q~~k~sp~~spkkr  254 (261)
T KOG1631|consen  217 RKVEVGT--ASKDAVDDEWIPGTTLKQKSKRSPAVSPKKR  254 (261)
T ss_pred             ceEeecc--cCcccccccccccHhHHhhccCCcccChhhh
Confidence            4434453  2333445555544  4666677777766653

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=97.40  E-value=0.001  Score=62.37  Aligned_cols=111  Identities=27%  Similarity=0.343  Sum_probs=79.8

Q ss_pred             ceeecCCceeEEEEEEeeCcccCCcceeEEEE-EEEeecCC-----ceeEEEEecceEE---EEeecccccccccccCCC
Q psy4382          61 NRIVKPGHEATLGYSFVPAEAVAGRPFGLSVN-LQYRDEHN-----NFFYEGIYNETVN---IITLGYSFVPAEAVAGRP  131 (258)
Q Consensus        61 ~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l~-l~Y~~~~~-----~~~~~~~~n~~v~---~~t~~~~~~p~e~~~g~p  131 (258)
                      ...+++|+...+-=.|.-..   ..|+.+..- ..++.-.+     ++|....||..|.   -+||.|+|.|++.|.|||
T Consensus        92 ~~~l~aG~~~~~LvgftN~g---~~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~  168 (285)
T PF03896_consen   92 TKKLPAGEPVKFLVGFTNKG---SEPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRP  168 (285)
T ss_pred             cccccCCCeEEEEEEEEeCC---CCCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcc
Confidence            67789999998888887764   244443221 13333332     3455678999888   899999999999999999


Q ss_pred             CcccccceecccCCceeeeeeeeeeE--EEEecCCCcCceeehhHHHHHHHH
Q psy4382         132 FGLSVNLQYRDEHNNFFYEGIYNETV--NIIEIDEGLDGETFFLYVFLGACV  181 (258)
Q Consensus       132 ~g~~i~~~~~d~~g~~y~~~vfN~TV--tVvE~~~sfD~q~iFLYlfL~a~~  181 (258)
                      |||++++.|+     .-....|-.++  ..|++-+  .+..+=..++++=++
T Consensus       169 f~L~i~l~y~-----d~~g~~y~~~~fN~TV~IvE--~~~~~D~e~iFLY~~  213 (285)
T PF03896_consen  169 FGLVINLIYE-----DSDGNQYQVTVFNGTVTIVE--PESGFDPETIFLYLF  213 (285)
T ss_pred             eEEEEEEEEE-----eCCCCEEEEEEecceEEEee--cCCCcChhhhhHHHH
Confidence            9999999996     44556788887  6888888  455566666555444

; GO: 0005783 endoplasmic reticulum

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=97.21  E-value=0.0022  Score=47.93  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             cCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEEEE
Q psy4382          14 PAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVNL   93 (258)
Q Consensus        14 ~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l~l   93 (258)
                      .+|+.+++-+.++|.|..++.-..+  ++.-|..+.   ......... .|+||++.++.+.+.+.+.-.+..|.|.+.+
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~--~l~~P~GW~---~~~~~~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a   75 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSL--SLSLPEGWT---VSASPASVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA   75 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EE--EEE--TTSE------EEEEE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEE--EEeCCCCcc---ccCCccccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence            4799999999999999876543333  444588865   122223333 8999999999999998887888889898888


Q ss_pred             EE
Q psy4382          94 QY   95 (258)
Q Consensus        94 ~Y   95 (258)
                      .|
T Consensus        76 ~y   77 (78)
T PF10633_consen   76 RY   77 (78)
T ss_dssp             E-
T ss_pred             Ee
Confidence            76

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=95.03  E-value=1.2  Score=39.29  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=58.8

Q ss_pred             ceeecCCceEEEEEEEEeCCCCcE-EEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCccee
Q psy4382          10 NMDLPAGSVVEFLVGFTNKGKQDF-TLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFG   88 (258)
Q Consensus        10 ~~~l~~G~~~~~lv~~~N~g~~~~-tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~   88 (258)
                      +..++.|+.+.+-+.+.|.|+.+- .|...+.+| .|.+| .++.-.+...+ ..++||++.+..|...|-.   .+.|.
T Consensus        31 ~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~f-p~~~F-~lvsG~~s~~~-~~i~pg~~vsh~~vv~p~~---~G~f~  104 (181)
T PF05753_consen   31 NKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSF-PPEDF-ELVSGSLSASW-ERIPPGENVSHSYVVRPKK---SGYFN  104 (181)
T ss_pred             cccccCCcEEEEEEEEEECCCCeEEEEEEECCCC-Ccccc-EeccCceEEEE-EEECCCCeEEEEEEEeeee---eEEEE
Confidence            456788999999999999998554 587778788 23444 45655555555 5899999999999987763   23333


Q ss_pred             EE-EEEEEeecC
Q psy4382          89 LS-VNLQYRDEH   99 (258)
Q Consensus        89 L~-l~l~Y~~~~   99 (258)
                      +. ..+.|+++.
T Consensus       105 ~~~a~VtY~~~~  116 (181)
T PF05753_consen  105 FTPAVVTYRDSE  116 (181)
T ss_pred             ccCEEEEEECCC
Confidence            22 234666665

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=92.17  E-value=2.4  Score=34.88  Aligned_cols=82  Identities=16%  Similarity=0.349  Sum_probs=58.2

Q ss_pred             ccCCccceeecCCceEEEEEEEEeCCCCcEEEEEEe--------eeeeccccc-------ceEEEecceeeeceeecCCc
Q psy4382           4 EHGVYINMDLPAGSVVEFLVGFTNKGKQDFTLDTLD--------ASLRYPMDF-------NFYIQNFSTIIYNRIVKPGH   68 (258)
Q Consensus         4 ~~~~~~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~--------gSl~~P~d~-------~~~iqNfTa~~~~~~V~pg~   68 (258)
                      ...+|....+..|+..++-+.++|.++++++|..--        |.+-|-..-       .+-+..+....-...|+|++
T Consensus        14 ~~~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~   93 (121)
T PF06030_consen   14 KNVSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNE   93 (121)
T ss_pred             CCCCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCC
Confidence            346889999999999999999999999999876532        222221110       12333333333448899999


Q ss_pred             eeEEEEEE-eeCcccCCc
Q psy4382          69 EATLGYSF-VPAEAVAGR   85 (258)
Q Consensus        69 ~at~~Y~F-~p~~~~~~~   85 (258)
                      +.++++.+ +|++.+.|-
T Consensus        94 sk~V~~~i~~P~~~f~G~  111 (121)
T PF06030_consen   94 SKTVTFTIKMPKKAFDGI  111 (121)
T ss_pred             EEEEEEEEEcCCCCcCCE
Confidence            99999999 788777665

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=91.08  E-value=2  Score=31.85  Aligned_cols=72  Identities=17%  Similarity=0.307  Sum_probs=43.4

Q ss_pred             eeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcceeE
Q psy4382          11 MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRPFGL   89 (258)
Q Consensus        11 ~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p~~L   89 (258)
                      .....|+.+++-+.++|.|..+..  .+.-.|..- +  ..+     .... ..+.||++.++.+.+.+.   .+..+.|
T Consensus        13 ~~~~~g~~~~i~~~V~N~G~~~~~--~~~v~~~~~-~--~~~-----~~~~i~~L~~g~~~~v~~~~~~~---~~G~~~i   79 (101)
T PF07705_consen   13 SNVVPGEPVTITVTVKNNGTADAE--NVTVRLYLD-G--NSV-----STVTIPSLAPGESETVTFTWTPP---SPGSYTI   79 (101)
T ss_dssp             SEEETTSEEEEEEEEEE-SSS-BE--EEEEEEEET-T--EEE-----EEEEESEB-TTEEEEEEEEEE-S---S-CEEEE
T ss_pred             CcccCCCEEEEEEEEEECCCCCCC--CEEEEEEEC-C--cee-----ccEEECCcCCCcEEEEEEEEEeC---CCCeEEE
Confidence            457789999999999999986521  122222211 1  112     1112 578999999999999887   4567777


Q ss_pred             EEEEEE
Q psy4382          90 SVNLQY   95 (258)
Q Consensus        90 ~l~l~Y   95 (258)
                      .+.+.+
T Consensus        80 ~~~iD~   85 (101)
T PF07705_consen   80 RVVIDP   85 (101)
T ss_dssp             EEEEST
T ss_pred             EEEEee
Confidence            766633

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein

Probab=89.81  E-value=1.3  Score=38.38  Aligned_cols=73  Identities=12%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             ccceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCccc
Q psy4382           8 YINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAV   82 (258)
Q Consensus         8 ~~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~   82 (258)
                      ...+++.-||...+.+..+|..+++++-..+---  .|.....|..-.-=-=+. ..+.|||+..+|=.|.-+..+
T Consensus        58 q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV--~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~IDp~i  131 (152)
T PF04442_consen   58 QRSVKVHPGETALVFYEATNPSDKPITGQAIPNV--TPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYIDPDI  131 (152)
T ss_dssp             -SEEEEETT--EEEEEEEEE-SSS-EE---EEEE---SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE-GGG
T ss_pred             eeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeE--CHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEECCcc
Confidence            4567889999999999999999999976655432  355444444332222234 789999999999999766644

In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=89.54  E-value=2.8  Score=32.68  Aligned_cols=66  Identities=20%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             eecCCceEEEEEEEEeCCCCc---EEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCc
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQD---FTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAE   80 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~---~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~   80 (258)
                      +..-|+..++.+.|+|..+.+   +++....-+..|+--   ....+........|.||++.+++-.+.|++
T Consensus        10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~---~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~   78 (107)
T PF00927_consen   10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGL---TRDQFKKEKFEVTLKPGETKSVEVTITPSQ   78 (107)
T ss_dssp             EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTT---EEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred             CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCc---ccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence            567899999999999998755   444445555555422   234666777778999999999999999986

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=88.84  E-value=2.8  Score=32.30  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=35.2

Q ss_pred             EEEEEEEEeCCCCcEEEEEEeeeeeccc---ccceEE------EecceeeeceeecCCceeEEEEEEeeCcccCCcceeE
Q psy4382          19 VEFLVGFTNKGKQDFTLDTLDASLRYPM---DFNFYI------QNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGL   89 (258)
Q Consensus        19 ~~~lv~~~N~g~~~~tV~~i~gSl~~P~---d~~~~i------qNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L   89 (258)
                      +++.+.++|.++.++++..-+|.--+-.   .-+..|      +=||..--...++||++.++.-.+-... ++|+.|-|
T Consensus         2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~-~~~G~Y~~   80 (82)
T PF12690_consen    2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKD-LSPGEYTL   80 (82)
T ss_dssp             EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----SEEEEE
T ss_pred             EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCC-CCCceEEE
Confidence            5789999999999999987777543321   001111      1244444568899999999888873332 33444443

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.77  E-value=2  Score=38.60  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             cceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcce
Q psy4382           9 INMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRPF   87 (258)
Q Consensus         9 ~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p~   87 (258)
                      ..+.+.-|+.+.+.+..+|..+.+++=..+--  -.|+....|..-.---=+. ..+.|||+.-+|-.|.-+..++-   
T Consensus        85 ~~v~v~pGet~~~~y~a~N~sd~~itg~A~~n--v~P~~Ag~YF~KveCFCFteq~L~pgE~vemPV~FfVDpd~~~---  159 (195)
T COG3175          85 REVYVRPGETNLIFYEAENLSDKPITGQATYN--VAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFVDPDFAD---  159 (195)
T ss_pred             ceeEeccCceEEEEEEEecCCCCCceeEEecc--cChhHhhhheeeeeEEEeeecccCCCCeEeccEEEEECccccc---
Confidence            45678889999999999999999985433211  1144333444332222233 67999999999999976653322   


Q ss_pred             eEEEEEEEeecCCceeEEEEecceEEEEeecccccc-ccc
Q psy4382          88 GLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVP-AEA  126 (258)
Q Consensus        88 ~L~l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p-~e~  126 (258)
                                +++        =+.|+.|||.|.|.| .|.
T Consensus       160 ----------dPe--------~kdvk~iTLSYTFF~~~~~  181 (195)
T COG3175         160 ----------DPE--------MKDVKTITLSYTFFPIRED  181 (195)
T ss_pred             ----------Ccc--------cCCCCeEEEEEEEEEcccC
Confidence                      221        145778999999999 444

>PRK05089 cytochrome C oxidase assembly protein; Provisional

Probab=88.75  E-value=1.4  Score=39.42  Aligned_cols=90  Identities=16%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             ccceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcc
Q psy4382           8 YINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRP   86 (258)
Q Consensus         8 ~~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p   86 (258)
                      ...+++.-||...+-+..+|..+++++-..+---  .|.....|..-+-=-=+. ..+.|||+..+|=.|.-+..+    
T Consensus        85 q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV--~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPV~F~IDP~i----  158 (188)
T PRK05089         85 QRSVDVHPGELNLVFYEAENLSDRPIVGQAIPSV--TPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYVDPDL----  158 (188)
T ss_pred             eeEEEEcCCCeEEEEEEEECCCCCcEEEEEeccc--CHHHHhhhccceeeecccCcccCCCCeEecCEEEEECCCc----
Confidence            4567899999999999999999999966554321  244434444332222344 789999999999999666522    


Q ss_pred             eeEEEEEEEeecCCceeEEEEecceEEEEeecccccccc
Q psy4382          87 FGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAE  125 (258)
Q Consensus        87 ~~L~l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~e  125 (258)
                                            -+.|+-|||.|.|.+..
T Consensus       159 ----------------------~~dv~~iTLSYTff~~~  175 (188)
T PRK05089        159 ----------------------PKDVKTITLSYTFFDVT  175 (188)
T ss_pred             ----------------------ccccCEEEEEEEEEecC
Confidence                                  22367788888888743

>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins

Probab=84.26  E-value=13  Score=34.61  Aligned_cols=88  Identities=15%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             CCccceeecCCceEEEEEEEEeCCC--CcEEEEEE-eeeeecccccceEEEecceee-eceeecCCceeEEEEEEeeCcc
Q psy4382           6 GVYINMDLPAGSVVEFLVGFTNKGK--QDFTLDTL-DASLRYPMDFNFYIQNFSTII-YNRIVKPGHEATLGYSFVPAEA   81 (258)
Q Consensus         6 ~~~~~~~l~~G~~~~~lv~~~N~g~--~~~tV~~i-~gSl~~P~d~~~~iqNfTa~~-~~~~V~pg~~at~~Y~F~p~~~   81 (258)
                      +++-..++..|++.++.|++.|+|.  ..++++.. ..+..+|.+  ..+.+-+... ....+..|++.+.+|+|.|.  
T Consensus       180 a~~Ypt~l~~ge~~~v~vgI~NhE~~~~~Ytv~v~l~~~~~~~~~--~~~~~~~~l~~~~~~L~~n~t~~~~~~~~~~--  255 (287)
T PF07760_consen  180 AGDYPTNLTSGEPGTVIVGIENHEGRPENYTVVVVLQNVTWNPNN--YNVMESTVLDRPIVTLADNETWEQPYKFTPF--  255 (287)
T ss_pred             cccCCeeEEcCCcEEEEEEEEcCCCCcEEEEEEEEEecccccccc--ccccchhcccceEEEeCCCCeEEEEEEEEEe--
Confidence            3444567899999999999999994  66666554 444444432  2232222222 23488999999999999993  


Q ss_pred             cCCcceeEEEEEEEeec
Q psy4382          82 VAGRPFGLSVNLQYRDE   98 (258)
Q Consensus        82 ~~~~p~~L~l~l~Y~~~   98 (258)
                      ..|....+..- -|+++
T Consensus       256 ~~~~~~~l~~l-LY~~~  271 (287)
T PF07760_consen  256 ITGENPRLEYL-LYKGG  271 (287)
T ss_pred             cCCCceEEEEE-EEcCC
Confidence            33444444443 35543

The region in question is approximately 330 amino acid residues long.

>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional

Probab=83.31  E-value=4.2  Score=37.57  Aligned_cols=94  Identities=16%  Similarity=0.223  Sum_probs=62.3

Q ss_pred             ccceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcc
Q psy4382           8 YINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRP   86 (258)
Q Consensus         8 ~~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p   86 (258)
                      -..+++.-||...+.+..+|..+++++-..+---  .|.....|..-+-=-=+. ..+.|||+..+|=.|.-+..+...|
T Consensus       129 q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV--~P~~Ag~YFnKieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~~D~  206 (232)
T PTZ00128        129 QKEVEVLPGETALAFYRAKNRSDKPVIGVATYHI--APPEAGLYFNKIQCFCFEEQRLNPHEEVDMPVFFYIDPDILNDP  206 (232)
T ss_pred             eeEEEEcCCCeEEEEEEEECCCCCcEEEEEeccc--CHHHHhhhccceeeecccccccCCCCeEecCEEEEECCCCCCCc
Confidence            3467889999999999999999999965544221  243333333322222233 7899999999999997665332211


Q ss_pred             eeEEEEEEEeecCCceeEEEEecceEEEEeeccccccc
Q psy4382          87 FGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPA  124 (258)
Q Consensus        87 ~~L~l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~  124 (258)
                      -                     -+.|+-|||.|-|.+.
T Consensus       207 ~---------------------~~~v~~ITLSYTFF~~  223 (232)
T PTZ00128        207 R---------------------LKWVDEITLSYTFFEA  223 (232)
T ss_pred             c---------------------cCCcCEEEEEEEEEec
Confidence            1                     1346778888888873

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=82.08  E-value=20  Score=27.26  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEE
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSV   91 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l   91 (258)
                      ++.-|+....-+.++|.+..+.....     +.|.+...   .|+...-...|.||++.++.-.|.|....  +.+.-.|
T Consensus        15 ~v~~g~~~~~~v~l~N~s~~p~~f~v-----~~~~~~~~---~~~v~~~~g~l~PG~~~~~~V~~~~~~~~--g~~~~~l   84 (102)
T PF14874_consen   15 NVFVGQTYSRTVTLTNTSSIPARFRV-----RQPESLSS---FFSVEPPSGFLAPGESVELEVTFSPTKPL--GDYEGSL   84 (102)
T ss_pred             EEccCCEEEEEEEEEECCCCCEEEEE-----EeCCcCCC---CEEEECCCCEECCCCEEEEEEEEEeCCCC--ceEEEEE
Confidence            46789999999999999998865543     22332221   23333334689999999999999976533  3344444


Q ss_pred             EE
Q psy4382          92 NL   93 (258)
Q Consensus        92 ~l   93 (258)
                      .+
T Consensus        85 ~i   86 (102)
T PF14874_consen   85 VI   86 (102)
T ss_pred             EE
Confidence            44

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=82.02  E-value=6.1  Score=26.86  Aligned_cols=43  Identities=21%  Similarity=0.475  Sum_probs=32.3

Q ss_pred             EEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEE
Q psy4382          23 VGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSF   76 (258)
Q Consensus        23 v~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F   76 (258)
                      +.|+|.|++++.|..|..|=--           |+..+. ..|+||++..+..+|
T Consensus         2 F~~~N~g~~~L~I~~v~tsCgC-----------t~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTSCGC-----------TTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEccCC-----------EEeeCCcceECCCCEEEEEEEC
Confidence            5799999999999988876532           233333 569999999887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	92.73
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	91.9
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	90.32
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	84.95
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	81.28

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=92.73  E-value=0.81  Score=36.82  Aligned_cols=77  Identities=10%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             CCceEEEEEEEEeCCCCcEEEEEEeeeeeccc--c-cceEEE------ecceeeeceeecCCceeEEEEEEeeCcccCCc
Q psy4382          15 AGSVVEFLVGFTNKGKQDFTLDTLDASLRYPM--D-FNFYIQ------NFSTIIYNRIVKPGHEATLGYSFVPAEAVAGR   85 (258)
Q Consensus        15 ~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~--d-~~~~iq------NfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~   85 (258)
                      .|+.+++.+.++|.++.++++..-+|..-+-.  | -+..|-      =||...-...++||++.++.-.+-  ...+|+
T Consensus        16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~--~~~~pG   93 (120)
T 3isy_A           16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK--EVPEPG   93 (120)
T ss_dssp             CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEES--SCCCSE
T ss_pred             CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeC--CCCCCc
Confidence            78899999999999999999988777652211  0 011221      244433458899999999998885  345667


Q ss_pred             ceeEEEEE
Q psy4382          86 PFGLSVNL   93 (258)
Q Consensus        86 p~~L~l~l   93 (258)
                      .|-|..-+
T Consensus        94 ~Ytl~a~l  101 (120)
T 3isy_A           94 TYEVKVTF  101 (120)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEE
Confidence            77666555

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=91.90  E-value=1  Score=38.40  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcc----
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRP----   86 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p----   86 (258)
                      .+. |+..+..+.|+|.|+.++.|..+..|=      .     -|+..+. ..+.||++.++...|.|...  ++.    
T Consensus       130 ~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc------g-----ct~~~~~~~~i~PGe~~~i~v~~~~~~~--~g~~~~~  195 (220)
T 2qsv_A          130 QLD-GETTKAAIEIRNVGAGPLRLHSVTTRN------P-----ALTAVPDRTEIKPGGSTLLRIAVDPQVM--KAEGWQS  195 (220)
T ss_dssp             ECT-TSCEEEEEEEEECSSSCEEEEEEEECS------T-----TEEEEESCSEECTTCEEEEEEEECHHHH--HHTTCSE
T ss_pred             ccC-CCeEEEEEEEEECCCCCEEEEEEEeCC------C-----CEeeecCCccCCCCCEEEEEEEEecCCC--CCcccce
Confidence            466 999999999999999999999887642      1     2333343 68999999999999988752  234    


Q ss_pred             eeEEEEEEEee
Q psy4382          87 FGLSVNLQYRD   97 (258)
Q Consensus        87 ~~L~l~l~Y~~   97 (258)
                      |.-.|.+.-.|
T Consensus       196 ~~~~i~v~~N~  206 (220)
T 2qsv_A          196 IAADISIICND  206 (220)
T ss_dssp             EEEEEEEEESC
T ss_pred             eccEEEEEECC
Confidence            66666663333

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=90.32  E-value=1.7  Score=37.04  Aligned_cols=75  Identities=9%  Similarity=-0.043  Sum_probs=54.6

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEE
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSV   91 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l   91 (258)
                      ++..|+.....+.|+|.|+.++++..+.    -|..       +++......|.||++..+...|-+.......++.=.|
T Consensus        14 ~v~~g~~~~~~~~i~N~g~~pl~i~~~~----~p~~-------~~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i   82 (220)
T 2qsv_A           14 ISMPEDEGVVRLVVNNTDESDLQVAVVS----LPSF-------VSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEPL   82 (220)
T ss_dssp             SBCTTCCCEEEEEEEECSSSCEEEEEEE----CCTT-------EECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEEEE
T ss_pred             cccCCCcceEEEEEEeCCCCceEEEecc----CCCc-------eEeeeCcceeCCCCceEEEEEEcchhcccCCceeeEE
Confidence            5678999999999999999999998763    2322       2332345889999999999999888754444454455


Q ss_pred             EEEEee
Q psy4382          92 NLQYRD   97 (258)
Q Consensus        92 ~l~Y~~   97 (258)
                      .|...+
T Consensus        83 ~v~~~~   88 (220)
T 2qsv_A           83 VLEVTS   88 (220)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            554443

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.95  E-value=8  Score=28.66  Aligned_cols=73  Identities=16%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEE
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSV   91 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l   91 (258)
                      ++.-|++.+..+.++|.|+.+..+..+..+     .  ..-..|+...-.-.|+||++.++.-.|.|..   ...|.-.+
T Consensus        21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~-----~--~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~---~g~f~~~i   90 (112)
T 2e6j_A           21 KVFTGSAHCYEAILYNKGSIDALFNMTPPT-----S--ALGACFVFSPKEGIIEPSGVQAIQISFSSII---LGNFEEEF   90 (112)
T ss_dssp             EEESSCCEEEEEEEEECCSSCEEEEECCCS-----S--HHHHHCEEESSEEEECTTBCCEEEEEECCCC---CEEEEEEE
T ss_pred             eEEECCEEEEEEEEEECCcceEEEEEecCC-----c--cccCcEEEECCcCEECCCCEEEEEEEEECCC---cceEEEEE
Confidence            467799999999999999999887765311     0  0011344444457899999999999999875   24455555


Q ss_pred             EEE
Q psy4382          92 NLQ   94 (258)
Q Consensus        92 ~l~   94 (258)
                      .+.
T Consensus        91 ~v~   93 (112)
T 2e6j_A           91 LVN   93 (112)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            443

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.28  E-value=5  Score=30.84  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             ecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEEEE
Q psy4382          13 LPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLSVN   92 (258)
Q Consensus        13 l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~l~   92 (258)
                      .+-|+..+..+.++|.|+.+....     +..+       ..|+...-.-.|+||++.++.-+|.|.+   ...|.-.+.
T Consensus        37 ~~v~~~~~~~~~l~N~g~~~~~f~-----~~~~-------~~F~i~P~~g~L~pg~~~~i~V~F~P~~---~g~~~~~l~  101 (122)
T 2ys4_A           37 CPVKYSTQKILLVRNIGNKNAVFH-----IKTC-------RPFSIEPAIGTLNVGESMQLEVEFEPQS---VGDHSGRLI  101 (122)
T ss_dssp             EESSSCEEEEEEEECCSSSCEEEE-----EECC-------TTEEEESSEEEECTTCEEEEEEEECCSS---SBCCCCBCE
T ss_pred             eecCCeEEEEEEEEECCCCCEEEE-----EecC-------CCeEEECCcCEECCCCEEEEEEEEEcCC---CccEEEEEE
Confidence            456899999999999999877553     2211       2455555568899999999999999985   344554555


Q ss_pred             EEE
Q psy4382          93 LQY   95 (258)
Q Consensus        93 l~Y   95 (258)
                      +.|
T Consensus       102 v~~  104 (122)
T 2ys4_A          102 VCY  104 (122)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	95.87
d1ex0a2	112	Transglutaminase, two C-terminal domains {Human (H	87.74
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	85.45
d1vjja2	115	Transglutaminase, two C-terminal domains {Human (H	85.26
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	84.34
d1so9a_	131	Cytochrome C oxidase assembly protein CtaG {Rhizob	82.95
d1g0da2	112	Transglutaminase, two C-terminal domains {Red sea	82.74

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=95.87  E-value=0.018  Score=43.02  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             ceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeE
Q psy4382          10 NMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGL   89 (258)
Q Consensus        10 ~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L   89 (258)
                      ...+.+|+.+++-+.++|.|....+-..+  ++.-|..|..   +.+.    ..|+||++.++...+.+...-.+..|.+
T Consensus        10 ~~~v~pG~~~~~~vtVtN~g~~~~~~~~~--~~~~P~GW~v---~~~~----~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i   80 (103)
T d1w8oa1          10 DVALEPGQQVTVPVAVTNQSGIAVPKPSL--QLDASPDWQV---QGSV----EPLMPGRQAKGQVTITVPAGTTPGRYRV   80 (103)
T ss_dssp             CEEECTTCEEEEEEEEECCSSSCBSSCEE--EEECCTTSEE---EEEE----CCBCTTCEEEEEEEEECCTTCCCEEEEE
T ss_pred             ceeeCCCCeEEEEEEEEeCCCCceeeeeE--EEcCCCCccc---cCcc----eeeCCCCcEEEEEEEECCCCCCCceEEE
Confidence            45688999999999999999866642222  3355888632   2222    3589999999999999888777888888


Q ss_pred             EEEEEEeec
Q psy4382          90 SVNLQYRDE   98 (258)
Q Consensus        90 ~l~l~Y~~~   98 (258)
                      .+.+.+.+.
T Consensus        81 ~~~a~~~~~   89 (103)
T d1w8oa1          81 GATLRTSAG   89 (103)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEeCCc
Confidence            777755444

>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=87.74  E-value=1.5  Score=32.31  Aligned_cols=67  Identities=12%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEE--EEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcc
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLD--TLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEA   81 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~--~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~   81 (258)
                      +..-|+...+.+.++|+..++-+|.  ...-+..|-   +....++-.......|+|+++.+++-.+.+++.
T Consensus        11 ~~~iG~df~v~i~~~N~s~~~~~v~l~l~a~~v~Yt---G~~~~~~~~~~~~v~L~p~~~~~v~~~v~~~~Y   79 (112)
T d1ex0a2          11 NAVLGKDFKLSITFRNNSHNRYTITAYLSANITFYT---GVPKAEFKKETFDVTLEPLSFKKEAVLIQAGEY   79 (112)
T ss_dssp             CCBTTCCEEEEEEEEECSSSCEEEEEEEEEEEECTT---SCEEEEEEEEEEEEEECTTEEEEEEEEECHHHH
T ss_pred             CcccCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeC---CcCchheEEeeEEEEECCCCEEEEEEEEcHHHh
Confidence            4678999999999999998766554  334444443   346677777888899999999999999977763

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=1.5  Score=31.40  Aligned_cols=81  Identities=17%  Similarity=0.317  Sum_probs=52.1

Q ss_pred             eeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCcceeEE
Q psy4382          11 MDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFGLS   90 (258)
Q Consensus        11 ~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~L~   90 (258)
                      ..+..|++++|.|.-++.|..+++|..     +.|... .         ....|......++..+|+|.+   ...+  .
T Consensus        17 ~~v~~g~~~~F~Vd~~~aG~g~l~v~i-----~~p~g~-~---------~~~~v~~~~dg~y~v~y~P~~---~G~h--~   76 (102)
T d2d7ma1          17 SGIPASLPVEFTIDARDAGEGLLTVQI-----LDPEGK-P---------KKANIRDNGDGTYTVSYLPDM---SGRY--T   76 (102)
T ss_dssp             SCEESSSCEEEEEEESSSCSSCEEEEE-----ECTTSC-B---------CCEEEEECSSSCEEEEECCCS---CEEE--E
T ss_pred             CCccCCCeEEEEEEeCCCCCCcEEEEE-----EeCCCC-E---------eeeEEEeCCCcEEEEEEEECC---CEeE--E
Confidence            347899999999999999999986654     344321 0         112233344557888898885   3445  4


Q ss_pred             EEEEEeecCCceeEEEEecceEEEEeecccccccccccCCCCcccccc
Q psy4382          91 VNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEAVAGRPFGLSVNL  138 (258)
Q Consensus        91 l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~e~~~g~p~g~~i~~  138 (258)
                      |++.|.                           ++.++|.||-..|.+
T Consensus        77 i~V~~~---------------------------g~~I~gSPF~v~V~p   97 (102)
T d2d7ma1          77 ITIKYG---------------------------GDEIPYSPFRIHALP   97 (102)
T ss_dssp             EEEEES---------------------------SCBCTTCSEEEEEEC
T ss_pred             EEEEEC---------------------------CEECCCCCEEEEEEC
Confidence            445443                           355788888766554

>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=85.26  E-value=2.3  Score=31.30  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             eecCCceEEEEEEEEeCCCCcEEEEE--EeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCccc
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDFTLDT--LDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAV   82 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~tV~~--i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~   82 (258)
                      .+.-|+...+.+.++|+.+++-+|..  ..-+..|-   +....++-.......|.|+++.+++-...+++..
T Consensus        13 ~~~iG~Df~v~l~~~N~s~~~~~v~l~l~a~av~Yt---G~~~~~~~~~~~~v~L~p~~~~~v~~~v~y~~Y~   82 (115)
T d1vjja2          13 MLAVGKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYN---GTLVHEVWKDSATMSLDPEEEAEHPIKISYAQYE   82 (115)
T ss_dssp             CCBTTSCEEEEEEEEECSSSCEEEEEEEEEEEECTT---CCEEEEEEEEEEEEEECTTCEEEEEEEECHHHHH
T ss_pred             CCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeC---CcCchheEEeeEEEEECCCCeEEEEEEECHHHHh
Confidence            56789999999999999987765543  34444443   3456777777788999999999999999777643

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=84.34  E-value=3.5  Score=29.83  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             eecCCceEEEEEEEEeCCCCcE--EEEEEeee-eecccccceEEEecceeeeceeecCCceeEEEEEEeeCcccCCccee
Q psy4382          12 DLPAGSVVEFLVGFTNKGKQDF--TLDTLDAS-LRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAEAVAGRPFG   88 (258)
Q Consensus        12 ~l~~G~~~~~lv~~~N~g~~~~--tV~~i~gS-l~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~~~~~~p~~   88 (258)
                      +..-|++..+.|.|+|-=+.++  -+..++|+ |..++.         ...+...|.||+++++...|+|..   ..+..
T Consensus        11 ~~~vg~~~~v~vsF~NPL~~~L~~c~~~vEG~GL~~~~~---------~~~~~~~v~pg~~~~~~~~~~P~~---~G~~~   78 (98)
T d2q3za3          11 EPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQK---------TVEIPDPVEAGEEVKVRMDLVPLH---MGLHK   78 (98)
T ss_dssp             CCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCE---------EEEECSCBCTTCEEEEEEEECCCS---SSCEE
T ss_pred             CcCcCCeEEEEEEEECCCCCchhCEEEEEEcCCcCcCcE---------EEeCCCccCCCCEEEEEEEEEcCC---cccEE
Confidence            3467999999999999987766  46667776 433321         122345799999999999999985   44566


Q ss_pred             EEEEE
Q psy4382          89 LSVNL   93 (258)
Q Consensus        89 L~l~l   93 (258)
                      |.+++
T Consensus        79 L~a~f   83 (98)
T d2q3za3          79 LVVNF   83 (98)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66666

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

Probab=82.95  E-value=0.43  Score=37.17  Aligned_cols=96  Identities=19%  Similarity=0.325  Sum_probs=62.9

Q ss_pred             ccceeecCCceEEEEEEEEeCCCCcEEEEEEeeeeecccccceEEEecceeeec-eeecCCceeEEEEEEeeCcccCCcc
Q psy4382           8 YINMDLPAGSVVEFLVGFTNKGKQDFTLDTLDASLRYPMDFNFYIQNFSTIIYN-RIVKPGHEATLGYSFVPAEAVAGRP   86 (258)
Q Consensus         8 ~~~~~l~~G~~~~~lv~~~N~g~~~~tV~~i~gSl~~P~d~~~~iqNfTa~~~~-~~V~pg~~at~~Y~F~p~~~~~~~p   86 (258)
                      ...+++.-|+...+-+..+|..+++++-..+-.-  .|.....|+.-.-=-=+. +.+.|||+..+|=.|.-+..+.-  
T Consensus        33 ~~~i~V~pGe~~~v~y~a~N~s~~~~~g~A~~nV--~P~~a~~Yf~KieCFCF~~Q~L~pgE~~~mpv~F~IDP~i~~--  108 (131)
T d1so9a_          33 QRDIDVRIGETVQIMYRAKNLASTPTTGQATFNV--TPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVK--  108 (131)
T ss_dssp             CSEEEECTTCCCCEEEEEEECSSSCEECCCEEEE--CSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGGS--
T ss_pred             ceEEEEeCCCeEEEEEEEECCCCCcEEEEEEeee--CHHHHhhheecCcEEEEeeeEECCCCEEEEeEEEEECCcccc--
Confidence            3567899999999999999999999865443321  244444443322222233 78999999999999977664411  


Q ss_pred             eeEEEEEEEeecCCceeEEEEecceEEEEeeccccccccc
Q psy4382          87 FGLSVNLQYRDEHNNFFYEGIYNETVNIITLGYSFVPAEA  126 (258)
Q Consensus        87 ~~L~l~l~Y~~~~~~~~~~~~~n~~v~~~t~~~~~~p~e~  126 (258)
                                |..         -+.++-+||.|-|.+.++
T Consensus       109 ----------D~~---------~~~i~~iTLSYTff~~~~  129 (131)
T d1so9a_         109 ----------PVE---------TQGIKTLTLSYTFYPREP  129 (131)
T ss_dssp             ----------STT---------TTTCCBCCEEEEECSCCS
T ss_pred             ----------CCC---------cCCcCEEEEEEEEeccCC
Confidence                      110         123566788888877554

>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=82.74  E-value=2.1  Score=31.55  Aligned_cols=63  Identities=13%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             CCceEEEEEEEEeCCCCcEEEE--EEeeeeecccccceEEEecceeeeceeecCCceeEEEEEEeeCc
Q psy4382          15 AGSVVEFLVGFTNKGKQDFTLD--TLDASLRYPMDFNFYIQNFSTIIYNRIVKPGHEATLGYSFVPAE   80 (258)
Q Consensus        15 ~G~~~~~lv~~~N~g~~~~tV~--~i~gSl~~P~d~~~~iqNfTa~~~~~~V~pg~~at~~Y~F~p~~   80 (258)
                      -|+...+.+.++|+..++-+|.  ...-+..|-   +....++-.......|+|+++.+++-.+..++
T Consensus        13 ~G~Df~v~i~~~N~s~~~~~v~l~l~a~~v~Yt---G~~~~~~~~~~~~v~L~p~~~~~v~~~i~y~~   77 (112)
T d1g0da2          13 FGTDFDVIVEVKNEGGRDAHAQLTMLAMAVTYN---SLRRGECQRKTISVTVPAHKAHKEVMRLHYDD   77 (112)
T ss_dssp             TTCCEEEEEEEEECSSSCEEEEEEEEEEEECTT---CBCCCCCCEEEEEEEECTTEEEEEEEEECHHH
T ss_pred             cCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeC---CcCccceeEeeEEEEECCCCeEEEEEEEcHHH
Confidence            5999999999999998666554  334444443   34556677777889999999999999997776