Psyllid ID: psy4393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRNL
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEcccc
Coil and Loop (DISEMBL)
mnlsnapssssnpkpnyvLKFTLAGHTkavssvkfspngewlassSADKLIKIWGAydgkfektisghklgisdvawssdsrllvsgsddktlkiwelssgkclktlkghsnyvfccnfnpqsnlivsgsfdesvriwdvrtgkclktlpahsdpvsavhfnrdgslivsssydglcriwdtaSGQCLktlidddnppvsfvkfspngKYILAATLDNTLklwdskvvtpaiicstplnlnyfyrnl
Flexible Loop (DISEMBL)
mnlsnapssssnpkpNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLlvsgsddktlkIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKtlpahsdpvsavHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVtpaiicstplnlnyfyrnl
Low Complexity Region (SEG)
MNLsnapssssnpkpnYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRNL
Disordered region (IsUnstruct)
****************YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYR**
Disordered Region (DISOPRED)
MNLSN**********NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRNL
Disordered Region (DISEMBL)
************PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRNL
Disordered Region (DISPRO)
*NLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q5M786	334	WD repeat-containing prot	yes	N/A	0.882	0.652	0.937	1e-118
Q498M4	334	WD repeat-containing prot	yes	N/A	0.894	0.661	0.941	1e-118
P61965	334	WD repeat-containing prot	yes	N/A	0.894	0.661	0.941	1e-118
P61964	334	WD repeat-containing prot	yes	N/A	0.894	0.661	0.941	1e-118
Q2KIG2	334	WD repeat-containing prot	yes	N/A	0.894	0.661	0.941	1e-118
Q9V3J8	361	Protein will die slowly O	yes	N/A	0.829	0.567	0.976	1e-117
Q86VZ2	330	WD repeat-containing prot	no	N/A	0.894	0.669	0.824	1e-103
Q5RE95	330	WD repeat-containing prot	yes	N/A	0.894	0.669	0.819	1e-103
Q9D7H2	328	WD repeat-containing prot	no	N/A	0.906	0.682	0.768	2e-98
Q4V8C4	328	WD repeat-containing prot	no	N/A	0.890	0.670	0.778	4e-98

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/224 (93%), Positives = 214/224 (95%), Gaps = 6/224 (2%)

Query: 7   PSSSSNP------KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
           PSSS+N       KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK
Sbjct: 19  PSSSNNQSKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78

Query: 61  FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN 120
           FEKTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFN
Sbjct: 79  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138

Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
           PQSNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.
Xenopus tropicalis (taxid: 8364)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/211 (97%), Positives = 209/211 (99%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 73
           KPNY LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS
Sbjct: 59  KPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 118

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
           DVAWSSDSRLLVSGSDDKTLK+WELS+GK LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE
Sbjct: 119 DVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 178

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 193
           SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID
Sbjct: 179 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 238

Query: 194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           DDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 239 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 269

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/222 (82%), Positives = 198/222 (89%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNPK-PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P+ PNY LK TL GHT+AVSSVKFSPNGEWLASSSAD+LI IWGAYDGK+E
Sbjct: 17  SSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYE 76

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KT+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHSNYVFCCNFNP 
Sbjct: 77  KTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPP 136

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLI+SGSFDE+V+IW+V+TGKCLKTL AHSDPVSAVHFN  GSLIVS SYDGLCRIWD 
Sbjct: 137 SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDA 196

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTL+DDDNPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 197 ASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/222 (81%), Positives = 198/222 (89%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNPK-PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P+ PNY LK TL GHT+AVSSVKFSPNGEWLASSSAD+LI IWGAYDGK+E
Sbjct: 17  SSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYE 76

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           +T+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHSNYVFCCNFNP 
Sbjct: 77  RTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPP 136

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLI+SGSFDE+V+IW+V+TGKCLKTL AHSDPVSAVHFN  GSLIVS SYDGLCRIWD 
Sbjct: 137 SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDA 196

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTL+DDDNPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 197 ASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score =  358 bits (919), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 195/225 (86%), Gaps = 1/225 (0%)

Query: 1   MNLSNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 59
            +L +AP     P KPNY L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDG
Sbjct: 12  QSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDG 71

Query: 60  KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF 119
             +KT+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+F
Sbjct: 72  NCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDF 131

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179
           NP SNLIVSGSFDESV+IW+V+TGKCLKTL AHSDP+SAV+FN +GSLIVS SYDGLCRI
Sbjct: 132 NPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRI 191

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           WD ASGQCL+TL D+ NPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 192 WDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score =  357 bits (916), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 172/221 (77%), Positives = 194/221 (87%), Gaps = 1/221 (0%)

Query: 5   NAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 63
           +AP     P KPNY L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDGK +K
Sbjct: 16  SAPQRVEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKK 75

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           T+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+FNP S
Sbjct: 76  TLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPS 135

Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 183
           NLIVSGSFDESV+IW+V+TGKCLKTL AHSDP+SAVHF+ +GSLIVS SYDGLCRIWD A
Sbjct: 136 NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAA 195

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SGQCL+TL D+ NPPVSFVKFSPNGKYIL ATLD+TLKLWD
Sbjct: 196 SGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWD 236

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
91077142	343	PREDICTED: similar to will die slowly [T	0.850	0.612	0.986	1e-119
289743251	351	WD40 repeat-containing protein [Glossina	0.890	0.626	0.955	1e-118
383865387	334	PREDICTED: protein will die slowly-like	0.902	0.667	0.938	1e-118
340711616	334	PREDICTED: protein will die slowly-like	0.902	0.667	0.938	1e-118
380023873	334	PREDICTED: protein will die slowly-like	0.902	0.667	0.938	1e-118
350405917	334	PREDICTED: WD repeat-containing protein	0.850	0.628	0.972	1e-117
427793047	327	Putative will die slowly, partial [Rhipi	0.858	0.648	0.954	1e-117
442761707	341	Putative u4/u6 small nuclear ribonucleop	0.866	0.627	0.954	1e-117
328793719	334	PREDICTED: WD repeat-containing protein	0.902	0.667	0.938	1e-117
307207347	334	Protein will die slowly [Harpegnathos sa	0.886	0.655	0.950	1e-117

>gi|91077142|ref|XP_971564.1| PREDICTED: similar to will die slowly [Tribolium castaneum] gi|270002042|gb|EEZ98489.1| hypothetical protein TcasGA2_TC000986 [Tribolium castaneum]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/216 (98%), Positives = 213/216 (98%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           SSSN KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH
Sbjct: 36  SSSNLKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 95

Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
           KLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS
Sbjct: 96  KLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 155

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL
Sbjct: 156 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 215

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 216 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 251

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743251|gb|ADD20373.1| WD40 repeat-containing protein [Glossina morsitans morsitans]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/223 (95%), Positives = 217/223 (97%), Gaps = 3/223 (1%)

Query: 5   NAPSS---SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 61
           NAP+S   S + KPNY LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKF
Sbjct: 37  NAPTSNKSSMSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKF 96

Query: 62  EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP 121
           EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK+WELSSGKCLKTLKGHSNYVFCCNFNP
Sbjct: 97  EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSSGKCLKTLKGHSNYVFCCNFNP 156

Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD
Sbjct: 157 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 216

Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 217 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 259

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865387|ref|XP_003708155.1| PREDICTED: protein will die slowly-like [Megachile rotundata]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 218/227 (96%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N ++AP+    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTASAPATGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711616|ref|XP_003394370.1| PREDICTED: protein will die slowly-like [Bombus terrestris]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 217/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPSS----SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + AP+S    SS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPASGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023873|ref|XP_003695734.1| PREDICTED: protein will die slowly-like [Apis florea]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 217/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + AP+    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPTTGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405917|ref|XP_003487593.1| PREDICTED: WD repeat-containing protein 5-like [Bombus impatiens]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/216 (97%), Positives = 212/216 (98%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+YDGKFEKTISGH
Sbjct: 27  SSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSYDGKFEKTISGH 86

Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
           KLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS
Sbjct: 87  KLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL
Sbjct: 147 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427793047|gb|JAA61975.1| Putative will die slowly, partial [Rhipicephalus pulchellus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/218 (95%), Positives = 214/218 (98%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           PS+++  KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS
Sbjct: 18  PSAAAKLKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 77

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
           GHKLGISDVAWS+DSRLLVS SDDKTLKIWE+SSGKCLKTLKGHSNYVFCCNFNPQSNLI
Sbjct: 78  GHKLGISDVAWSTDSRLLVSASDDKTLKIWEVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 137

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
           VSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ
Sbjct: 138 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 197

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 198 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 235

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761707|gb|JAA73012.1| Putative u4/u6 small nuclear ribonucleoprotein prp4, partial [Ixodes ricinus]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/218 (95%), Positives = 214/218 (98%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           PS+++  KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS
Sbjct: 32  PSAAAKLKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 91

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
           GHKLGISDVAWS+DSRLLVS SDDKTLKIWE+SSGKCLKTLKGHSNYVFCCNFNPQSNLI
Sbjct: 92  GHKLGISDVAWSTDSRLLVSASDDKTLKIWEVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 151

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
           VSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ
Sbjct: 152 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 211

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 212 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 249

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793719|ref|XP_003251918.1| PREDICTED: WD repeat-containing protein 5 [Apis mellifera]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 216/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + APS    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPSTGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGS DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSXDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207347|gb|EFN85097.1| Protein will die slowly [Harpegnathos saltator]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/221 (95%), Positives = 215/221 (97%), Gaps = 2/221 (0%)

Query: 6   APSSSSNP--KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 63
           A S+ SN   +PNY LK+TLAGHTKAVSSVKFSPNGEWLASS+ADKLIKIWG+YDGKFEK
Sbjct: 22  ASSTKSNTIVRPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSAADKLIKIWGSYDGKFEK 81

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS
Sbjct: 82  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 141

Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 183
           NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA
Sbjct: 142 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.842	0.576	0.975	4.8e-110
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.842	0.622	0.971	1e-109
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.842	0.622	0.971	1e-109
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.842	0.622	0.971	1e-109
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.842	0.622	0.971	1e-109
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.842	0.622	0.971	1e-109
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.842	0.675	0.971	1e-109
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.842	0.622	0.971	1e-109
MGI|MGI:1916794	328	Wdr5b "WD repeat domain 5B" [M	0.842	0.634	0.798	3.5e-91
WB|WBGene00006474	376	wdr-5.1 [Caenorhabditis elegan	0.842	0.553	0.730	4.4e-84

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 203/208 (97%), Positives = 206/208 (99%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    62 YTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 121

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDSRLLVSGSDDKTLK+WELS+GK LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:   122 WSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 181

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   182 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 241

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   242 PPVSFVKFSPNGKYILAATLDNTLKLWD 269

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:     9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   189 PPVSFVKFSPNGKYILAATLDNTLKLWD 216

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 166/208 (79%), Positives = 186/208 (89%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDG  +KT+ GH L ISDVA
Sbjct:    29 YALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVA 88

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+FNP SNLIVSGSFDESV+
Sbjct:    89 WSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVK 148

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IW+V+TGKCLKTL AHSDP+SAV+FN +GSLIVS SYDGLCRIWD ASGQCL+TL D+ N
Sbjct:   149 IWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGN 208

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct:   209 PPVSFVKFSPNGKYILTATLDNTLKLWD 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 152/208 (73%), Positives = 181/208 (87%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y L  TL GHTK++SS KFSP G++L +SSADK +KIW       E+T++GHKLG++D+A
Sbjct:    77 YKLMCTLEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIA 136

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDSR +VS SDDKTLKI+E+ + +  KTLKGH+NYVFCCNFNPQS+L+VSGSFDESVR
Sbjct:   137 WSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVR 196

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TG C+KTLPAHSDPVSAV FNRDGSLI S SYDGL RIWDTA+GQC+KTL+DD+N
Sbjct:   197 IWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDEN 256

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPV+FVKFSPNGKYILA+ LD+TLKLWD
Sbjct:   257 PPVAFVKFSPNGKYILASNLDSTLKLWD 284

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54KL5	WDR5_DICDI	No assigned EC number	0.7129	0.8421	0.6208	yes	N/A
Q9D7H2	WDR5B_MOUSE	No assigned EC number	0.7688	0.9068	0.6829	no	N/A
Q9V3J8	WDS_DROME	No assigned EC number	0.9763	0.8299	0.5678	yes	N/A
Q5M786	WDR5_XENTR	No assigned EC number	0.9375	0.8825	0.6526	yes	N/A
Q17963	TG125_CAEEL	No assigned EC number	0.7320	0.8218	0.5398	yes	N/A
Q86VZ2	WDR5B_HUMAN	No assigned EC number	0.8243	0.8947	0.6696	no	N/A
Q4V8C4	WDR5B_RAT	No assigned EC number	0.7782	0.8906	0.6707	no	N/A
Q498M4	WDR5_RAT	No assigned EC number	0.9414	0.8947	0.6616	yes	N/A
P61964	WDR5_HUMAN	No assigned EC number	0.9414	0.8947	0.6616	yes	N/A
P61965	WDR5_MOUSE	No assigned EC number	0.9414	0.8947	0.6616	yes	N/A
Q5RE95	WDR5B_PONAB	No assigned EC number	0.8198	0.8947	0.6696	yes	N/A
Q2KIG2	WDR5_BOVIN	No assigned EC number	0.9414	0.8947	0.6616	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-75
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-68
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-67
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-56
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-14
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-11
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-10
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  228 bits (583), Expect = 8e-75
 Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 1/206 (0%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+ TL GHT  V+ V FSP+G+ LA+ S D  IK+W    G+  +T+ GH   + DVA S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
           +D   L SGS DKT+++W+L +G+C++TL GH++YV    F+P   ++ S S D+++++W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           DV TGKCL TL  H+D V++V F+ DG+ + SSS DG  ++WD  +G+C+ TL       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-E 179

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           V+ V FSP+G+ +L+++ D T+KLWD
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWD 205

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  211 bits (538), Expect = 6e-68
 Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 1/208 (0%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L  TL GHT  V  V  S +G +LAS S+DK I++W    G+  +T++GH   +S VA+S
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102

Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            D R+L S S DKT+K+W++ +GKCL TL+GH+++V    F+P    + S S D ++++W
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           D+RTGKC+ TL  H+  V++V F+ DG  ++SSS DG  ++WD ++G+CL TL   +N  
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-G 221

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDSK 226
           V+ V FSP+G  + + + D T+++WD +
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  210 bits (536), Expect = 1e-67
 Identities = 88/203 (43%), Positives = 130/203 (64%), Gaps = 1/203 (0%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           TL GHT  VSSV FSP+G  L+SSS DK IK+W    GK   T+ GH   ++ VA+S D 
Sbjct: 88  TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
             + S S D T+K+W+L +GKC+ TL GH+  V    F+P    ++S S D ++++WD+ 
Sbjct: 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
           TGKCL TL  H + V++V F+ DG L+ S S DG  R+WD  +G+C++TL    N  V+ 
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266

Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
           + +SP+GK + + + D T+++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  180 bits (459), Expect = 5e-56
 Identities = 76/167 (45%), Positives = 109/167 (65%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 74
                  TL GHT  V+SV FSP+G ++ASSS D  IK+W    GK   T++GH   ++ 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           VA+S D   L+S S D T+K+W+LS+GKCL TL+GH N V    F+P   L+ SGS D +
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +R+WD+RTG+C++TL  H++ V+++ ++ DG  + S S DG  RIWD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (285), Expect = 2e-29
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 9/227 (3%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 65
            S S      +    L GH  +++S+ FSP+GE L S S+D  IK+W   +G+       
Sbjct: 46  LSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE 105

Query: 66  SGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNP 121
             H   +S +A SS   +S LL S S D T+K+W+LS+ GK ++TL+GHS  V    F+P
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 122 QSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRI 179
              L+ SGS  D ++++WD+RTGK L TL  H+DPVS++ F+ DG  LI S S DG  R+
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
           WD ++G+ L++ +   +  V    FSP+G  + + + D T++LWD +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (284), Expect = 3e-29
 Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 22  TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 80
           TLAGHT  VSS+ FSP+G   +AS S+D  I++W    GK  ++           ++S D
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 81  SRLLVSGSDDKTLKIWEL-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
             LL SGS D T+++W+L SS   L+TL GHS+ V    F+P   L+ SGS D +VR+WD
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Query: 140 VRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLIDDDN 196
           + TGK     TL  H  PVS++ F+ DGSL+VS  S DG  R+WD  +G+ LKTL    N
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY 242
             V  V FSP+G+ + + + D T++LWD    +         +   
Sbjct: 373 --VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  112 bits (280), Expect = 1e-28
 Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 8/208 (3%)

Query: 26  HTKAVSSVKF-SPNGEWLAS--SSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 81
           H  +VS +   SP+G  +    SS D  +K+W     GK  +T+ GH   ++ +A+S D 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 82  RLLVSGSD-DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 139
           +LL SGS  D T+K+W+L +GK L TL GH++ V    F+P    LI SGS D ++R+WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 140 VRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           + TGK L+ TL  HSD V +  F+ DGSL+ S S DG  R+WD  S   L   +   +  
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDSK 226
           V  V FSP+GK + + + D T++LWD +
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (276), Expect = 4e-28
 Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 7/223 (3%)

Query: 12  NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKL 70
           +     +L+ TL+GH+ +V S  FSP+G  LAS S+D  I++W         +T+SGH  
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 71  GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQ-SNLIV 127
            +  VA+S D +LL SGS D T+++W+L +GK     TLKGH   V   +F+P  S L+ 
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            GS D ++R+WD+RTGK LKTL  HS  V +V F+ DG ++ S S DG  R+WD ++G  
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230
           L+ L    +  V+ + FSP+GK + + + DNT++LWD K    
Sbjct: 405 LRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 3e-22
 Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 17/211 (8%)

Query: 12  NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHK 69
           + + +  L  TL+GH+ +V SV FSP+G+ LAS S+D  +++W    GK     T+ GH+
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 70  LGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
             +S +++S D S L+  GSDD T+++W+L +GK LKTL+GHSN V   +F+P   ++ S
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSS 387

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GS D +VR+WD+ TG  L+ L  H+  V+++ F+ DG  + S S D   R+WD  +    
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT---- 443

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219
                     +  V FSP+GK + + + D +
Sbjct: 444 ---------SLKSVSFSPDGKVLASKSSDLS 465

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 88.6 bits (218), Expect = 3e-20
 Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 13/234 (5%)

Query: 1   MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
           +  +++ SS +  K     +   + ++ ++ S+  S +G  L +  +D L+ +       
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPD----L 56

Query: 61  FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLKTLKGHSNY----VF 115
               + GH+  I+ +A+S D  LL+SGS D T+K+W+L +G K +K+L+G  +     + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSY 173
             + +  S L+ S S D +V++WD+ T GK ++TL  HS+ V+++ F+ DG L+ S SS 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDSK 226
           DG  ++WD  +G+ L TL      PVS + FSP+G  ++A  + D T++LWD  
Sbjct: 177 DGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 71.3 bits (174), Expect = 3e-14
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 81
           LA  +K       S     +ASS+ + ++++W     +    +  H+  +  + +SS D 
Sbjct: 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP 588

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDV 140
            LL SGSDD ++K+W ++ G  + T+K  +N + C  F  +S   ++ GS D  V  +D+
Sbjct: 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDL 647

Query: 141 RTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD---TASG 185
           R  K  L T+  HS  VS V F  D S +VSSS D   ++WD   + SG
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISG 695

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 9/128 (7%)

Query: 67  GHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL-------SSGKCLKTLKGHSNYVFCCN 118
           G +  I DVA++  D + L + S+D T+  W +       +    +  L+GH+  V   +
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 119 FNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           F+P + N++ S   D  V +WDV  GK ++ +  HSD ++++ +N DGSL+ ++S D   
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 178 RIWDTASG 185
            I D   G
Sbjct: 193 NIIDPRDG 200

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 23  LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           L GHTK V  V F P+    LAS+ AD ++ +W    GK  + I  H   I+ + W+ D 
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES----VR 136
            LL + S DK L I +   G  + +++ H S     C +  + +LI++    +S    + 
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240

Query: 137 IWDVR 141
           +WD R
Sbjct: 241 LWDTR 245

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           SG+ LKTLKGH+  V    F+P    + SGS D ++++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +G+ LKTL  H+ PV++V F+ DG  + S S DG  ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           GK L+TLKGH+  V    F+P  NL+ SGS D +VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           GK L+TL  H+ PV++V F+ DG+L+ S S DG  R+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 58 DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
           G+  KT+ GH   ++ VA+S D + L SGSDD T+K+W+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           L  TL GHT  V+SV FSP+G  LAS S D  +++W
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 59 GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW 96
          GK  +T+ GH   ++ VA+S D  LL SGSDD T+++W
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 7e-08
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
          L  TL GHT  V+SV FSP+G++LAS S D  IK+W
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 16/197 (8%)

Query: 23  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------GH--KLGI 72
           L G    +  V F+P + + L ++S D  I  WG  +    + IS       GH  K+GI
Sbjct: 71  LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
                S+ + +L S   D  + +W++  GK ++ +K HS+ +    +N   +L+ + S D
Sbjct: 131 VSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189

Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVS--AVHFNRDGSLI---VSSSYDGLCRIWDTASGQC 187
           + + I D R G  + ++ AH+   S   +   R   +I    S S      +WDT     
Sbjct: 190 KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249

Query: 188 LKTLIDDDNPPVSFVKF 204
             + +D D     F+ F
Sbjct: 250 PYSTVDLDQSSALFIPF 266

Length = 493

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 65  ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL----SSGKCLK----TLKGHSNYVF 115
           + GH   I D+ ++   S +L SGS+D T+++WE+     S K +K     LKGH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 116 CCNFNPQSNLIV-SGSFDESVRIWDVRTGK 144
             ++NP +  I+ S  FD  V IWD+   K
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SG+ LKTL     P V+ V FSP+GKY+ + + D T+KLWD
Sbjct: 1   SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 107 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG----------KCLKTLPAHSDP 155
           LKGH++ +    FNP  S ++ SGS D ++R+W++             +C+  L  H   
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKK 127

Query: 156 VSAVHFNRDGSLIV-SSSYDGLCRIWD 181
           +S + +N     I+ SS +D    IWD
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWD 154

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           G+ L+TL     P V+ V FSP+G  + + + D T+++WD
Sbjct: 1   GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG0272|consensus	459		100.0
KOG0263|consensus	707		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0266|consensus	456		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0266|consensus	456		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0273|consensus	524		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0291|consensus	893		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0316|consensus	307		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645|consensus	312		100.0
KOG0265|consensus	338		100.0
KOG0295|consensus	406		100.0
KOG0318|consensus	603		100.0
KOG0643|consensus	327		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0282|consensus	503		100.0
KOG0640|consensus	430		99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0273|consensus	524		99.97
KOG0291|consensus	893		99.97
KOG0296|consensus	399		99.97
KOG0315|consensus	311		99.97
KOG0289|consensus	506		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0296|consensus	399		99.97
KOG0283|consensus	712		99.97
KOG0316|consensus	307		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0318|consensus	603		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0310|consensus	487		99.97
KOG0645|consensus	312		99.97
KOG0275|consensus	508		99.97
KOG0643|consensus	327		99.97
KOG0278|consensus	334		99.97
KOG0292|consensus	1202		99.97
KOG0319|consensus	775		99.96
KOG0276|consensus	794		99.96
KOG1407|consensus	313		99.96
KOG0277|consensus	311		99.96
KOG0265|consensus	338		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0285|consensus	460		99.96
KOG0281|consensus	499		99.96
KOG0306|consensus	888		99.96
KOG0294|consensus	362		99.96
KOG0319|consensus	775		99.96
KOG0276|consensus	794		99.96
KOG1446|consensus	311		99.96
KOG0274|consensus	537		99.96
KOG1446|consensus	311		99.96
KOG0282|consensus	503		99.96
KOG0973|consensus	942		99.96
KOG0264|consensus	422		99.96
KOG0292|consensus	1202		99.96
KOG0647|consensus	347		99.96
KOG0277|consensus	311		99.96
KOG0646|consensus	476		99.95
KOG0641|consensus	350		99.95
KOG0293|consensus	519		99.95
KOG0293|consensus	519		99.95
KOG0640|consensus	430		99.95
KOG0313|consensus	423		99.95
KOG0313|consensus	423		99.95
KOG0772|consensus	641		99.95
KOG0269|consensus	839		99.95
KOG0305|consensus	484		99.95
KOG0289|consensus	506		99.95
KOG0281|consensus	499		99.95
KOG0306|consensus	888		99.95
KOG0300|consensus	481		99.95
KOG0288|consensus	459		99.95
KOG0264|consensus	422		99.95
KOG0310|consensus	487		99.94
KOG0308|consensus	735		99.94
KOG0299|consensus	479		99.94
KOG0274|consensus	537		99.94
KOG1407|consensus	313		99.94
KOG0275|consensus	508		99.94
KOG0268|consensus	433		99.94
KOG1273|consensus	405		99.94
KOG4283|consensus	397		99.94
KOG0267|consensus	825		99.94
KOG1332|consensus	299		99.94
KOG0283|consensus	712		99.94
KOG1274|consensus	933		99.94
KOG0973|consensus	942		99.94
KOG0278|consensus	334		99.93
KOG0299|consensus	479		99.93
KOG0308|consensus	735		99.93
KOG0305|consensus	484		99.93
KOG0288|consensus	459		99.93
KOG0267|consensus	825		99.93
KOG0772|consensus	641		99.93
KOG0301|consensus	745		99.92
KOG1036|consensus	323		99.92
KOG0269|consensus	839		99.92
KOG0302|consensus	440		99.92
KOG0303|consensus	472		99.92
KOG0300|consensus	481		99.91
KOG2096|consensus	420		99.91
KOG2055|consensus	514		99.91
KOG1539|consensus	910		99.91
KOG1332|consensus	299		99.91
KOG0302|consensus	440		99.91
KOG0639|consensus	705		99.91
KOG2048|consensus	691		99.9
KOG4328|consensus	498		99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0270|consensus	463		99.9
KOG0641|consensus	350		99.89
KOG0646|consensus	476		99.89
KOG0639|consensus	705		99.89
KOG2445|consensus	361		99.89
KOG0301|consensus	745		99.89
KOG0647|consensus	347		99.89
KOG2048|consensus	691		99.89
KOG1408|consensus	1080		99.88
KOG2096|consensus	420		99.88
KOG1274|consensus	933		99.88
KOG1036|consensus	323		99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG1524|consensus	737		99.87
KOG0290|consensus	364		99.87
KOG4378|consensus	673		99.87
KOG0771|consensus	398		99.87
KOG2106|consensus	626		99.87
KOG2106|consensus	626		99.86
KOG4283|consensus	397		99.86
KOG0642|consensus	577		99.86
KOG1063|consensus	764		99.86
KOG0270|consensus	463		99.86
KOG2055|consensus	514		99.85
KOG0294|consensus	362		99.85
KOG0307|consensus	1049		99.85
KOG0650|consensus	733		99.85
KOG1034|consensus	385		99.85
KOG1408|consensus	1080		99.84
KOG1273|consensus	405		99.84
KOG1063|consensus	764		99.84
KOG2919|consensus	406		99.83
KOG0303|consensus	472		99.82
KOG4328|consensus	498		99.82
KOG1007|consensus	370		99.82
KOG0649|consensus	325		99.82
KOG0321|consensus	720		99.82
KOG1445|consensus	1012		99.82
KOG1009|consensus	434		99.82
KOG1188|consensus	376		99.81
KOG1272|consensus	545		99.81
KOG0321|consensus	720		99.81
KOG0322|consensus	323		99.81
KOG1539|consensus	910		99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG0307|consensus	1049		99.8
KOG1523|consensus	361		99.8
KOG1009|consensus	434		99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG4378|consensus	673		99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG0268|consensus	433		99.79
KOG1445|consensus	1012		99.79
KOG2110|consensus	391		99.78
KOG3881|consensus	412		99.78
KOG1007|consensus	370		99.77
KOG1034|consensus	385		99.77
KOG0644|consensus	1113		99.77
KOG1310|consensus	758		99.77
KOG2321|consensus	703		99.77
KOG2919|consensus	406		99.77
KOG0650|consensus	733		99.76
KOG0649|consensus	325		99.76
KOG0642|consensus	577		99.76
KOG1538|consensus	1081		99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1538|consensus	1081		99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.74
KOG2394|consensus	636		99.74
KOG1240|consensus	1431		99.74
KOG2110|consensus	391		99.74
PRK05137	435	tolB translocation protein TolB; Provisional	99.74
KOG0290|consensus	364		99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
KOG2111|consensus	346		99.71
KOG1523|consensus	361		99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG1188|consensus	376		99.71
KOG1272|consensus	545		99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG0322|consensus	323		99.7
KOG2445|consensus	361		99.69
KOG1524|consensus	737		99.69
KOG1963|consensus	792		99.69
KOG2394|consensus	636		99.69
KOG0771|consensus	398		99.69
KOG1517|consensus	1387		99.67
KOG4227|consensus	609		99.65
KOG4497|consensus	447		99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1587|consensus	555		99.64
KOG2139|consensus	445		99.64
KOG1517|consensus	1387		99.64
KOG1963|consensus	792		99.63
PRK00178	430	tolB translocation protein TolB; Provisional	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG1587|consensus	555		99.61
KOG1310|consensus	758		99.61
KOG2139|consensus	445		99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PRK04792	448	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG3881|consensus	412		99.57
KOG2111|consensus	346		99.57
KOG4547|consensus	541		99.54
KOG0974|consensus	967		99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
KOG4227|consensus	609		99.5
PRK04043	419	tolB translocation protein TolB; Provisional	99.48
KOG0644|consensus	1113		99.47
KOG2321|consensus	703		99.47
KOG1064|consensus	2439		99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.45
KOG1354|consensus	433		99.45
KOG4497|consensus	447		99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.42
KOG4190|consensus	1034		99.42
KOG1240|consensus	1431		99.39
KOG2315|consensus	566		99.39
KOG1334|consensus	559		99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.36
KOG0974|consensus	967		99.36
KOG1334|consensus	559		99.33
KOG0280|consensus	339		99.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG1409|consensus	404		99.31
KOG0280|consensus	339		99.3
KOG4547|consensus	541		99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.25
KOG1354|consensus	433		99.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.21
KOG2041|consensus	1189		99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.19
KOG1409|consensus	404		99.19
KOG4714|consensus	319		99.18
KOG1275|consensus	1118		99.17
KOG3914|consensus	390		99.16
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.11
KOG1064|consensus	2439		99.1
KOG4532|consensus	344		99.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.1
KOG3914|consensus	390		99.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.09
KOG4532|consensus	344		99.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.07
KOG4190|consensus	1034		99.07
KOG4714|consensus	319		99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
KOG1832|consensus	1516		99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.98
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.96
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG2695|consensus	425		98.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.9
KOG1912|consensus	1062		98.9
KOG2315|consensus	566		98.86
KOG0882|consensus	558		98.86
KOG2695|consensus	425		98.84
KOG2114|consensus	933		98.83
KOG1912|consensus	1062		98.81
KOG0309|consensus	1081		98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.81
KOG2041|consensus	1189		98.8
KOG0309|consensus	1081		98.76
KOG0882|consensus	558		98.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.73
KOG1920|consensus	1265		98.69
KOG1920|consensus	1265		98.68
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.68
KOG2066|consensus	846		98.67
KOG2314|consensus	698		98.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.66
KOG2314|consensus	698		98.65
COG3391	381	Uncharacterized conserved protein [Function unknow	98.58
KOG2066|consensus	846		98.56
KOG1275|consensus	1118		98.56
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.52
KOG1008|consensus	783		98.52
KOG1645|consensus	463		98.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.5
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.5
KOG1645|consensus	463		98.48
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.46
KOG4649|consensus	354		98.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.43
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.42
KOG2114|consensus	933		98.36
PRK02888	635	nitrous-oxide reductase; Validated	98.34
KOG3617|consensus	1416		98.33
KOG4640|consensus	665		98.32
KOG3617|consensus	1416		98.28
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.27
KOG3621|consensus	726		98.27
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.18
PRK13616	591	lipoprotein LpqB; Provisional	98.15
KOG1832|consensus	1516		98.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.1
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.08
KOG4640|consensus	665		98.07
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.04
COG3391	381	Uncharacterized conserved protein [Function unknow	98.03
KOG4649|consensus	354		98.03
PRK13616	591	lipoprotein LpqB; Provisional	98.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.01
KOG3621|consensus	726		97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.92
KOG1008|consensus	783		97.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.8
KOG2395|consensus	644		97.77
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.73
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.7
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.66
PHA02713	557	hypothetical protein; Provisional	97.66
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.62
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.58
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.55
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.52
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.51
KOG2079|consensus	1206		97.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.4
PHA03098	534	kelch-like protein; Provisional	97.39
KOG2444|consensus	238		97.37
KOG2395|consensus	644		97.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.2
KOG4499|consensus	310		97.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.09
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.04
KOG2280|consensus	829		97.01
KOG4441|consensus	571		97.0
KOG4441|consensus	571		97.0
KOG2079|consensus	1206		96.96
PHA02790	480	Kelch-like protein; Provisional	96.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.88
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.85
KOG2444|consensus	238		96.84
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.82
PHA02713	557	hypothetical protein; Provisional	96.8
PRK10115	686	protease 2; Provisional	96.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.7
KOG3630|consensus	1405		96.61
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.58
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.57
PRK13684	334	Ycf48-like protein; Provisional	96.46
COG5167	776	VID27 Protein involved in vacuole import and degra	96.39
PRK13684	334	Ycf48-like protein; Provisional	96.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.97
PRK10115	686	protease 2; Provisional	95.89
PHA03098	534	kelch-like protein; Provisional	95.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.83
KOG3630|consensus	1405		95.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.82
COG5167	776	VID27 Protein involved in vacuole import and degra	95.81
KOG4499|consensus	310		95.76
KOG1983|consensus	993		95.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.68
KOG1916|consensus	1283		95.64
KOG4460|consensus	741		95.48
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.46
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.22
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.14
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.02
PHA02790	480	Kelch-like protein; Provisional	94.93
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.92
KOG2280|consensus	829		94.76
KOG2247|consensus	615		94.55
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.16
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.96
KOG1897|consensus	1096		93.27
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.18
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.84
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.48
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.46
KOG1916|consensus	1283		92.34
COG4590	733	ABC-type uncharacterized transport system, permeas	92.34
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.27
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.14
KOG2377|consensus	657		92.03
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.94
KOG1900|consensus	1311		91.85
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.7
KOG2247|consensus	615		91.51
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.29
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.76
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.75
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.68
COG4590	733	ABC-type uncharacterized transport system, permeas	90.44
PLN02153	341	epithiospecifier protein	90.2
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.02
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.89
PLN02193	470	nitrile-specifier protein	89.62
COG5276	370	Uncharacterized conserved protein [Function unknow	89.33
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.2
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.1
KOG1900|consensus	1311		89.1
COG5276	370	Uncharacterized conserved protein [Function unknow	88.77
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.17
KOG2377|consensus	657		87.8
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.75
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.85
PLN02153	341	epithiospecifier protein	86.83
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.46
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.4
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.03
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.83
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.53
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.72
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.95
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.46
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	81.67
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	80.69
KOG3616|consensus	1636		80.38
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.17

>KOG0272|consensus

Probab=100.00  E-value=4.1e-41  Score=256.65  Aligned_cols=223  Identities=32%  Similarity=0.559  Sum_probs=206.1

Q ss_pred             CceEEEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      +..+..++.+|+..|.++.|+|.  +.-+|+|+.||.+++|+..+...+..+.+|...|..++|+|+|++|+|++-|.+-
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW  285 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW  285 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence            34567788999999999999996  5689999999999999999888889999999999999999999999999999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ++||+.++..+....+|...|.+++|.|+|.++++|+-|..-+|||+|+++++..+.+|..+|.+|.|+|+|..||+|+.
T Consensus       286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~  365 (459)
T KOG0272|consen  286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS  365 (459)
T ss_pred             hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence            99999999988888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      |++++|||++..+.+..+ ..|..-|+.+.|+| .|.+|++++.|++++||..++..|+.+++++-+
T Consensus       366 Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~  431 (459)
T KOG0272|consen  366 DNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG  431 (459)
T ss_pred             CCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence            999999999988775543 45667789999998 789999999999999999999999888777543

>KOG0263|consensus

Probab=100.00  E-value=1.5e-39  Score=264.68  Aligned_cols=209  Identities=32%  Similarity=0.590  Sum_probs=199.1

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.||.++|.++.|+|+.++|++|++|+++++|.+.+.......++|..+|.++.|+|-|-++++++.|++-++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      ....+.+.+.+|-+.|.|+.|+|+.+++++|+.|.++++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +||+.+++.+..+..+ ...|..+.|+.||..||+|+.|+.|++||....
T Consensus       603 iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  603 IWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999888776655 788999999999999999999999999997654

>KOG0271|consensus

Probab=100.00  E-value=2.8e-39  Score=244.23  Aligned_cols=227  Identities=33%  Similarity=0.603  Sum_probs=197.6

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      .....++.||.++|.|+.|+|+|..|++|+.|.++++||..+.......++|..-|.+++|+|||+.|++|+.||.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            33444577999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCceE-EEEEecCCccEEEEEEcC-----CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393          97 ELSSGKC-LKTLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        97 d~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      |.++++. ...+++|...|.+++|.|     ...++++++.||.++|||+..++++..+.+|..+|+|++|-.+| ++++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liyS  263 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYS  263 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEe
Confidence            9998764 467899999999999976     56799999999999999999999999999999999999997554 7899


Q ss_pred             ecCCCeEEEEeCCCceeeeee-----------------------------------------------------------
Q psy4393         171 SSYDGLCRIWDTASGQCLKTL-----------------------------------------------------------  191 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~-----------------------------------------------------------  191 (247)
                      |+.|++|++|+...|.+.+.+                                                           
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            999999999987764211100                                                           


Q ss_pred             -------------------ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccccee
Q psy4393         192 -------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFY  244 (247)
Q Consensus       192 -------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  244 (247)
                                         ...|...|+.+.||||++++|+++-|..|++||.++++.+-+++.+..+.|=+
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv  415 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV  415 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence                               11233447889999999999999999999999999999998988888776643

>KOG0272|consensus

Probab=100.00  E-value=3.9e-39  Score=245.83  Aligned_cols=216  Identities=31%  Similarity=0.532  Sum_probs=201.4

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEEEECCCc
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      -+..++|..+.|+++++.|++|+.+|.+++|...+......+.+|...+.++.|+|.  +..+++++.||++++|++.+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            366899999999999999999999999999999999999999999999999999996  568999999999999999998


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      ..+..+.+|...|..++|+|+|++|+|++.|.+.++||++++..+....+|...|.+++|+|||.++++|+.|..-+|||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            89999999999999999999999999999999999999999998888889999999999999999999999999999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ++++.++..+. .|..+|..++|+|+|..||+|+.|++++|||++.-.++-++..+++.
T Consensus       332 lRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  332 LRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             cccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence            99999876654 47788999999999999999999999999999988877777776654

>KOG0279|consensus

Probab=100.00  E-value=5.1e-36  Score=218.04  Aligned_cols=215  Identities=33%  Similarity=0.531  Sum_probs=188.7

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      -......+.||...|..+..++||++.++++.|+.+++||..+++..+.+.+|...|.+++|++|.+.|++|+.|.+|++
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCceEEEEEecC-CccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393          96 WELSSGKCLKTLKGH-SNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      |++............ .+.|.|++|+|.  ...|++++.|+.+++||+++-+....+.+|.+.++.+.++|||.+.++|+
T Consensus       132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence            999765444333332 688999999998  67899999999999999999888888999999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .||.+.+||++.++.+..+  .+...|..++|+|+.-+|+.+. +..|+|||...+..+-.
T Consensus       212 kdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  212 KDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEE  269 (315)
T ss_pred             CCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhh
Confidence            9999999999999876654  4567899999999876665554 55699999887655443

>KOG0286|consensus

Probab=100.00  E-value=3.4e-35  Score=215.06  Aligned_cols=223  Identities=25%  Similarity=0.481  Sum_probs=202.4

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      ..+...+.++++|...|.++.|++|++++++++.||.+.|||..+...+.-+.-...-|-.++|+|.|+++++|+-|...
T Consensus        42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            44566778899999999999999999999999999999999999888777777677779999999999999999999999


Q ss_pred             EEEECCCc------eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCC
Q psy4393          94 KIWELSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGS  166 (247)
Q Consensus        94 ~v~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~  166 (247)
                      .||++.+.      +..+.+.+|.+.+.|+.|-++ ..|+|++.|.++.+||+++++.+..+..|.+.|.++.++| +++
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            99999854      345678899999999999885 5788999999999999999999999999999999999999 999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      .+++|+-|+..++||++.+...+.+. .+...|+.+.|.|+|.-+++|+.|++.++||++....+.+|..+.
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~  271 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS  271 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence            99999999999999999999888875 456789999999999999999999999999999998888887543

>KOG0266|consensus

Probab=100.00  E-value=2.9e-35  Score=242.35  Aligned_cols=228  Identities=52%  Similarity=0.881  Sum_probs=204.8

Q ss_pred             CCCCceEEEEEecC-CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcC
Q psy4393          13 PKPNYVLKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        13 ~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      ..+.+.+..++.+| ...|.++.|+++|+.+++++.++.+++|+....+  ....+.+|...|.+++|+|+++++++++.
T Consensus       144 ~~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  144 SSRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             ccccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC
Confidence            34445566666555 7899999999999999999999999999997666  66667889999999999999999999999


Q ss_pred             CCeEEEEEC-CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          90 DKTLKIWEL-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        90 d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      |+++++||+ ..+..++.+++|...|.+++|+|+++++++|+.|+.|++||++++++...+..|.++|++++|++++.+|
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence            999999999 5558889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeCCCce--eeeeeccCCCC-CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         169 VSSSYDGLCRIWDTASGQ--CLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ++++.|+.+++||+.++.  +...+...... +++++.|+|++.++++++.|+.+++||.+.......+..+.+.
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~  378 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL  378 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence            999999999999999998  44555555545 7999999999999999999999999999998888888877765

>KOG0271|consensus

Probab=100.00  E-value=1.9e-36  Score=228.95  Aligned_cols=215  Identities=32%  Similarity=0.608  Sum_probs=185.5

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEE-EEEecccCCeEEEEECC-----CCCEEEEEcCCCeE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSS-----DSRLLVSGSDDKTL   93 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i   93 (247)
                      .++.++|..-|.|++|+|||+.||+|+.||.|++||..+++.. ..+.+|...|++++|.|     ..+++++++.||.+
T Consensus       150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            4677899999999999999999999999999999998877654 56889999999999976     56789999999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE--------------------------
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK--------------------------  147 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--------------------------  147 (247)
                      +|||+..+.++..+.+|...|.|++|..+ .+|++|+.|++|++|+...|....                          
T Consensus       230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  230 RIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             EEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            99999999999999999999999999865 589999999999999875532211                          


Q ss_pred             -----------------------------------------------------eecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393         148 -----------------------------------------------------TLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       148 -----------------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                                                                           .+..|..-|..+.|+||++++|+++.|
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD  388 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD  388 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence                                                                 122344557889999999999999999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ..|++||.++|+.+..+. .|..+|..++|+.|.++|++|+.|.+++|||.++++...-+..
T Consensus       389 kSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG  449 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG  449 (480)
T ss_pred             cceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence            999999999999887764 4567899999999999999999999999999998776544443

>KOG0279|consensus

Probab=100.00  E-value=4.3e-34  Score=208.03  Aligned_cols=220  Identities=29%  Similarity=0.444  Sum_probs=192.0

Q ss_pred             CceEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecC-----CCeEEEEEecccCCeEEEEECCCCCEEEEEcC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAY-----DGKFEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      +..+..++.+|.+.|+.++..+. .+.++++++|..+.+|++.     .|..++.+.+|...|..+..++||++.++++.
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            34567889999999999999886 4578889999999999864     35667889999999999999999999999999


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-CCCeEEEEECCC--CC
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRD--GS  166 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~  166 (247)
                      |+.+++||+.+++..+.+.+|...|.+++++++...+++|+.|.+|++|+............. .+.|+|+.|+|+  ..
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999765444333332 678999999998  67


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ++++++.|+.+++||+++-+....+ ..+..-++.+++||||...++|+.||.+.+||++.++.+-.+..
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a  232 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA  232 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence            9999999999999999987765554 45667889999999999999999999999999999877544433

>KOG0315|consensus

Probab=100.00  E-value=3.8e-34  Score=205.41  Aligned_cols=220  Identities=21%  Similarity=0.403  Sum_probs=189.2

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..++.+|++.|+++.|..+|+++++|++||+++|||+......+.+. +..+|+++..+|+...|+++..+|.|++||+.
T Consensus        76 v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   76 VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            57778999999999999999999999999999999998866655554 56899999999999999999999999999998


Q ss_pred             CceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe------EEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393         100 SGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK------CLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       100 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ...+.+.+. .....+.++...|+|..++.+...|.+++|++-..+      ++..+++|.+.+....++|++++|++++
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence            876655543 334578899999999999999999999999997543      4566789999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      .|.+++||+.++--........+..-+..++||.||+||++++.|+.+++||...++.+..+..+..+
T Consensus       235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            99999999988762223334455567889999999999999999999999999999988888887663

>KOG0266|consensus

Probab=100.00  E-value=2.9e-33  Score=230.49  Aligned_cols=219  Identities=39%  Similarity=0.703  Sum_probs=192.9

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEec-CCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      +..++.+|...|.+++|+|+++++++++.|+++++||. ..+.....+.+|...|++++|+|+++.+++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            34455789999999999999999999999999999999 55688899999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe--EEEeecCCCC--CeEEEEECCCCCEEEEecC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSD--PVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~  173 (247)
                      ++++++...+.+|.+.|.+++|+++++++++++.|+.|++||+.++.  +...+..+..  ++++++|+|++.++++++.
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            99999999999999999999999999999999999999999999998  4566655554  4899999999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCC--CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      |+.+++||+..+.....+..+...  .+.....++.++++++|+.|+.|++||...+..+..+..+
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            999999999998877776555443  3444455789999999999999999999876655555554

>KOG0263|consensus

Probab=100.00  E-value=1.1e-33  Score=230.74  Aligned_cols=218  Identities=25%  Similarity=0.519  Sum_probs=196.4

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-------------------------------eEEEEEeccc
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------------------------------KFEKTISGHK   69 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~-------------------------------~~~~~~~~~~   69 (247)
                      +++..-...++|..|++|+.+||.|..|..|++|.+...                               .....+.+|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            444444568999999999999999999999999976521                               1123467899


Q ss_pred             CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (247)
                      ++|....|+|+.++|+++++|+++++|.+.+..++-..++|..+|+.+.|+|.|-++|+++.|++-++|......+.+.+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999888889999


Q ss_pred             cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         150 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       150 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ..|-+.+.|+.|+|+..++++|+.|..+++||+.+|..++.+ .+|..+|.+++|||+|++|++|+.||.|++||...+.
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence            999999999999999999999999999999999999987665 5688899999999999999999999999999999988


Q ss_pred             eEEEEccCCc
Q psy4393         230 PAIICSTPLN  239 (247)
Q Consensus       230 ~~~~~~~~~~  239 (247)
                      ++..+..+.+
T Consensus       611 ~v~~l~~Ht~  620 (707)
T KOG0263|consen  611 LVKQLKGHTG  620 (707)
T ss_pred             chhhhhcccC
Confidence            8877777644

>KOG0286|consensus

Probab=100.00  E-value=1.3e-32  Score=201.60  Aligned_cols=210  Identities=26%  Similarity=0.498  Sum_probs=188.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC------eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      ..-|..++|+|.|+++|.|+-|....||++...      +....+.+|...+.++.|-+| ..|+|++.|.++.+||+++
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET  175 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence            456899999999999999999999999998744      345668899999999999885 5689999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ++.+..+.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.+.+.|..|+..|++++|.|+|.-+++|+.|+..++
T Consensus       176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRl  255 (343)
T KOG0286|consen  176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRL  255 (343)
T ss_pred             ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEE
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCceeeeeeccC-CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         180 WDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ||++..+.+..+... ...+|+.++||..|++|.+|..|.++.|||.--.+-..++..+
T Consensus       256 yDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  256 YDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH  314 (343)
T ss_pred             EeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc
Confidence            999998877776543 3578999999999999999999999999997555544444443

>KOG0273|consensus

Probab=100.00  E-value=5.3e-33  Score=215.09  Aligned_cols=222  Identities=26%  Similarity=0.498  Sum_probs=199.4

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      .++..|.++|.+++|+..|.+|++++.|+++.+||..++...+.+.-|..+-.++.|-.+ ..+++++.|+.|+++.+..
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~  348 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE  348 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecC
Confidence            355679999999999999999999999999999999999999888888887678888754 4588999999999999998


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC---------CEEEEe
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---------SLIVSS  171 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~  171 (247)
                      ..++.++.+|.+.|.++.|+|.+.+|++++.|+++++|..........+.+|...|..+.|+|.|         ..++++
T Consensus       349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa  428 (524)
T KOG0273|consen  349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA  428 (524)
T ss_pred             CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe
Confidence            88999999999999999999999999999999999999998888888999999999999999865         468999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccccee
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFY  244 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  244 (247)
                      +.|+.+++||+..+.++..+. .+..+|..++|+|+|+++|+|+.||.|++|+.+..+.+..++..-.....|
T Consensus       429 s~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~  500 (524)
T KOG0273|consen  429 SFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC  500 (524)
T ss_pred             ecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE
Confidence            999999999999999988764 566789999999999999999999999999999999888877655444443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=7.9e-32  Score=221.82  Aligned_cols=212  Identities=19%  Similarity=0.344  Sum_probs=177.7

Q ss_pred             EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCe-------EEEEEecccCCeEEEEECCCC-CEEEEEcCCCeE
Q psy4393          23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTL   93 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   93 (247)
                      +.+|.+.|.+++|+| ++++|++|+.|+.|++|++.++.       ....+.+|...|.+++|+|++ +.|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            568999999999999 88999999999999999986542       345678899999999999975 689999999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC-eEEEEECCCCCEEEEec
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~  172 (247)
                      ++||+.+++....+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence            99999999888888889999999999999999999999999999999999988888888764 34667888877777654


Q ss_pred             ----CCCeEEEEeCCCceee-eeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393         173 ----YDGLCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       173 ----~dg~i~v~d~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~  234 (247)
                          .|+.|++||+++.... ..........+....|++++.+|++++ .|+.|++||.....++...
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence                4789999999875432 222223334566678999999999887 5999999999988766553

>KOG0291|consensus

Probab=100.00  E-value=1.5e-32  Score=223.27  Aligned_cols=208  Identities=31%  Similarity=0.582  Sum_probs=184.5

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+|...+++++++|||+++|+|+.||.|+|||...+-+..++..|..+|+.+.|+..|+.+++++-||+|+.||+.....
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EEEEecCC-ccEEEEEEcCCCCEEEEeeCCC-CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         104 LKTLKGHS-NYVFCCNFNPQSNLIVSGSFDE-SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       104 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      .+++.... -...|++.+|.|.++.+|+.|. .|.+|++++|+.+..+.+|++||.+++|+|++..|+++++|.+|++||
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            88887543 3467888999999999998776 599999999999999999999999999999999999999999999999


Q ss_pred             CCCce-eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         182 TASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      +-... ....+.  ....+..++|+|||+.|++++.||.|.+||.+.+.+.-.
T Consensus       507 if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~  557 (893)
T KOG0291|consen  507 IFSSSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS  557 (893)
T ss_pred             eeccCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence            86542 222222  234578899999999999999999999999987665533

>KOG0284|consensus

Probab=100.00  E-value=2.3e-34  Score=219.11  Aligned_cols=203  Identities=31%  Similarity=0.560  Sum_probs=188.4

Q ss_pred             EecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          23 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        23 ~~~h~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +.+|+ ..|++++|+|....+++|+.||.|+|||....+....+.+|.-.|.+++|+|....|+++++|..|++||.+++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            34454 99999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC-CCEEEEecCCCeEEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIW  180 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~  180 (247)
                      .++.++.+|+..|..+.|+|++++|++++.|..++++|+++-+.+..+++|...++++.|+|- ..+|.+|+.||.+..|
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence            999999999999999999999999999999999999999988888899999999999999995 4578889999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      .+...+++..+...+...|..++|+|=|..|++|+.|.++++|.-
T Consensus       335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            998767777777778889999999999999999999999999964

>KOG0285|consensus

Probab=100.00  E-value=2.8e-32  Score=204.93  Aligned_cols=218  Identities=29%  Similarity=0.579  Sum_probs=189.3

Q ss_pred             CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      +...+|.+...+.+|.+-|.|+++.|..+++++|+.|++++|||+.+++....+.+|...|..+++++-.-++++++.|+
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            33444555556679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      .|+-||++..+.++...+|-+.|.|++.+|.-..+++|+.|..+++||+|+...+..+.+|..+|..+.+.|-...+++|
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccC----------------------------------------CCCCeEEEEECCCCCEE
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDD----------------------------------------DNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~----------------------------------------~~~~v~~~~~s~~~~~l  211 (247)
                      +.|++|++||++.++....+..+                                        +...++.++...|+ ++
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~  374 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VL  374 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eE
Confidence            99999999999988754443211                                        11224445554443 67


Q ss_pred             EEEEcCCeEEEEECCCcce
Q psy4393         212 LAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       212 ~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++|+..|.+.+||.+++..
T Consensus       375 ~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  375 VSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             EEcCCceEEEEEecCcCcc
Confidence            7788888899998877643

>KOG0316|consensus

Probab=100.00  E-value=2.1e-32  Score=195.14  Aligned_cols=218  Identities=31%  Similarity=0.531  Sum_probs=195.3

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ...+..|.++|..+.|+-+|++.++|+.|.+|++|+...+.+.....+|...|.+++.+.|+..+++++.|..+.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            35577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC--eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      +|+..+.+++|...|..+.|+.+...+++|+.|..+++||.++.  ++++.+......|.++..+  +..+++|+.||.+
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv  167 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV  167 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence            99999999999999999999999999999999999999999864  4667776666788888775  4568999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY  242 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  242 (247)
                      +.||++.++....++   ..||+++.|++|++.+++++.|+++++.|..+++.+.+|-.+.+-+|
T Consensus       168 RtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey  229 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY  229 (307)
T ss_pred             EEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence            999999997654443   46899999999999999999999999999988887777666655443

>KOG0295|consensus

Probab=100.00  E-value=5.4e-33  Score=208.88  Aligned_cols=217  Identities=35%  Similarity=0.604  Sum_probs=196.8

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..++.||+.+|..++|+..|++|++++.|=.+++||..+ -++.....+|...|.++.|-|.|.+|++++.|.+|+.|++
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence            446679999999999999999999999998899999865 3445567789999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC--------------
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD--------------  164 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------  164 (247)
                      .++-++.++.+|...+..++.+.||.++++++.|.++++|-+.++++...+..|+.++.+++|.|.              
T Consensus       223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~  302 (406)
T KOG0295|consen  223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTN  302 (406)
T ss_pred             ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCC
Confidence            999999999999999999999999999999999999999999999888899999999999999762              


Q ss_pred             -CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         165 -GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       165 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                       +.++.+++.|++|++||+.++.++.++..+ ..-|..++|+|.|+||+++..|+++++||.+..++..+...+
T Consensus       303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             CccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence             258999999999999999999999887654 456899999999999999999999999999999887776643

>KOG0284|consensus

Probab=100.00  E-value=8.7e-34  Score=215.97  Aligned_cols=211  Identities=30%  Similarity=0.523  Sum_probs=185.7

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      ..|..+|+++.|+++|.++++|+.+|.|++|+..-. .+..+..| ...|++++|+|....++++++||.|+|||....+
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence            479999999999999999999999999999986433 33344444 4889999999999999999999999999998888


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      ....+.+|.-.|.+++|+|...++++++.|..|++||.++++++..+..|...|..+.|+|++.+|++++.|..+++||+
T Consensus       214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di  293 (464)
T KOG0284|consen  214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI  293 (464)
T ss_pred             hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEeh
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ++-+.+..+. .+...++++.|+|-. .+|.+|+.||.|..|......|+..+..
T Consensus       294 R~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~  347 (464)
T KOG0284|consen  294 RTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP  347 (464)
T ss_pred             hHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence            9766555543 455678999999954 5778899999999999987777665443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-30  Score=201.58  Aligned_cols=212  Identities=42%  Similarity=0.782  Sum_probs=189.8

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ++.+|.++|.+++|+|++++|++++.+|.+++|+..++.....+..|...+..+.|+|+++.+++++.++.+++|++.++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            45689999999999999999999999999999999888777778888888999999999999999999999999999987


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      +....+..+...+.++.|++++.++++++.++.+++||+++++....+..|...+.++.|+|++.++++++.++.+.+||
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d  163 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD  163 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence            77778888888899999999988899888899999999998888888888888999999999999998888899999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      +++++....+. .+...+.++.|+|+++.+++++.||.|++||.+...++..+
T Consensus       164 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         164 LRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             ccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            98877665554 44557899999999999999999999999999887766665

>KOG0645|consensus

Probab=100.00  E-value=4.9e-30  Score=186.26  Aligned_cols=208  Identities=32%  Similarity=0.615  Sum_probs=179.8

Q ss_pred             ceEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCC---eEEEEE-ecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDG---KFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      .++..++.+|.+++-.++|+|- |..||+|+.|..|++|+...+   .+...+ .+|...|++++|+|.|++|++++-|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567788899999999999998 889999999999999998742   222223 36788899999999999999999999


Q ss_pred             eEEEEECCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC---eEEEeecCCCCCeEEEEECCCCC
Q psy4393          92 TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---KCLKTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus        92 ~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~  166 (247)
                      ++.+|.-..+  +++..+.+|...|.+++|+++|++||+++.|+.+-+|.+..+   +++..++.|...|..+.|+|...
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            9999987654  577889999999999999999999999999999999998744   46778899999999999999999


Q ss_pred             EEEEecCCCeEEEEeCC---CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         167 LIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +|+++++|.+|++|+-.   ..++.+++. .+...|.+++|++.|..|++++.|++++||-.
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            99999999999999765   234555543 44458999999999999999999999999974

>KOG0265|consensus

Probab=100.00  E-value=2.7e-31  Score=195.25  Aligned_cols=204  Identities=27%  Similarity=0.553  Sum_probs=180.5

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +.+|.+.|..+.|+|+|..+|+|+.|..|.+|+... .+....+++|.+.|..+.|.+|++.|++++.|.+++.||+++|
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            468999999999999999999999999999999653 3445677899999999999999999999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ++.+.++.|...+..+.-..-| .++.+++.|+++++||+|....++.+.. ...++++.|...+..+.+|+-|+.|++|
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvW  201 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVW  201 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeee
Confidence            9999999999988887744444 4667788999999999998887777643 4578999999999999999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      |++.+.....+ .++..+|+.+..+|+|.++.+-+-|+++++||.+-.
T Consensus       202 d~r~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  202 DLRKNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ccccCcceEEe-ecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            99988877665 456678999999999999999999999999998753

>KOG0295|consensus

Probab=100.00  E-value=3.8e-31  Score=198.98  Aligned_cols=204  Identities=35%  Similarity=0.636  Sum_probs=190.1

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ++.+|...|.+++|-|.|.+++++++|.+|+.|+..++.++..+.+|..-|..++.+.||..+++++.|.++++|-+.++
T Consensus       188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCC---------------CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQ---------------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  166 (247)
                      ++...++.|.-++.+++|-|.               +.++.+++.|+.|++||+.++.++..+.+|.+.|..++|+|.|+
T Consensus       268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK  347 (406)
T ss_pred             hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence            888889999999999999762               25899999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +|+++..|+++++||+.++++.+.+. .+..-+++++|+.+..++++|+.|..+++|+.+
T Consensus       348 yi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             EEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            99999999999999999999988775 555678999999999999999999999999854

>KOG0318|consensus

Probab=100.00  E-value=3.2e-30  Score=202.27  Aligned_cols=220  Identities=27%  Similarity=0.497  Sum_probs=176.5

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe---cccCCeEEEEECCCCCEEEEEcCC
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      -|++.-+.++..|..-|.++.|+|||+++++++.||++.+||-.+++.+..+.   +|.+.|.+++|+||++++++++.|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            35577777888999999999999999999999999999999999999988887   899999999999999999999999


Q ss_pred             CeEEEEECCCceEEEE-------------------------------------------EecCCccEEEEEEcCCCCEEE
Q psy4393          91 KTLKIWELSSGKCLKT-------------------------------------------LKGHSNYVFCCNFNPQSNLIV  127 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~~~l~  127 (247)
                      .++++||+.+.+++++                                           +.+|...|.++..+|++..|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            9999999876544332                                           235666788888888888888


Q ss_pred             EeeCCCCEEEEECCCCeE-----------E--------------------------------------------------
Q psy4393         128 SGSFDESVRIWDVRTGKC-----------L--------------------------------------------------  146 (247)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~-----------~--------------------------------------------------  146 (247)
                      +|+.||.|.-||..++..           +                                                  
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            888888888887643210           0                                                  


Q ss_pred             ----------------------------------------------------------------EeecCCCCCeEEEEEC
Q psy4393         147 ----------------------------------------------------------------KTLPAHSDPVSAVHFN  162 (247)
Q Consensus       147 ----------------------------------------------------------------~~~~~~~~~i~~~~~~  162 (247)
                                                                                      .....|.+++++++++
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                                                                            0011244567778888


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ||+.+||+|...+.+.+||..+.+.......-|...|.+++|+|+.+++|+|+.|..|.||+++.....++
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~  567 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII  567 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence            88888888888888888888777664444444678899999999999999999999999999876543333

>KOG0643|consensus

Probab=100.00  E-value=3.1e-30  Score=187.06  Aligned_cols=215  Identities=25%  Similarity=0.413  Sum_probs=193.4

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      -+.+|.++++.+.|+.+|.+|++|+.|....+|-..+++.+..+.+|.+.|.++..+.+.+.+++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECC-------CCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVR-------TGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      +.+..++. ...|..+.|++++++++....+     +.|.++|++       ..+++..+..+...++.+-|.|.+++++
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99988874 4568999999999998877653     469999998       3445777778888999999999999999


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +|..+|.|..||+++++....-...+...|+.+.+++|..++++++.|.+.++||..+...+.+|...
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te  231 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE  231 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence            99999999999999987666555566778999999999999999999999999999998888877653

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.3e-29  Score=208.56  Aligned_cols=209  Identities=21%  Similarity=0.348  Sum_probs=167.3

Q ss_pred             EEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCe--------EEEEEecccCCeEEEEECCCCCE-EEEEcC
Q psy4393          20 KFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK--------FEKTISGHKLGISDVAWSSDSRL-LVSGSD   89 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~   89 (247)
                      ...+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++.++.        ....+.+|...|.+++|+|++.. +++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4567899999999999996 7899999999999999987532        23456788899999999998876 468899


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEE-----EEECCC
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-----VHFNRD  164 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-----~~~~~~  164 (247)
                      |+.|++||+++++....+. +...+.+++|+|+|.++++++.|+.|++||+++++.+..+..|.+.+.+     ..|+++
T Consensus       147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            9999999999988766665 4567999999999999999999999999999999998888888876433     234588


Q ss_pred             CCEEEEecCCC----eEEEEeCCC-ceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         165 GSLIVSSSYDG----LCRIWDTAS-GQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       165 ~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +.++++++.++    .|++||++. .+.+....... ...+......++|.++++|+.|+.|++|+.....
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            88999887764    799999985 44444432222 2233333335568899999999999999987653

>KOG0282|consensus

Probab=100.00  E-value=3.9e-32  Score=210.84  Aligned_cols=217  Identities=29%  Similarity=0.572  Sum_probs=186.3

Q ss_pred             EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC-CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +.+++.+|+..|+++.|.| .+.+|++++.|+.|+||++.+ +++++.+.+|..+|.++.|+++|..+++++-|+.+++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            5567889999999999999 888999999999999999876 88899999999999999999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      |+++|++...+.. ...+.|+.|.|++ +.+++|+.|+.|+.||+|+++.++....|-++|..+.|-++|+.+++.+.|+
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence            9999999888774 4557899999988 8999999999999999999999888889999999999999999999999999


Q ss_pred             eEEEEeCCCceeeeee---------------------------------------------ccCCC--CCeEEEEECCCC
Q psy4393         176 LCRIWDTASGQCLKTL---------------------------------------------IDDDN--PPVSFVKFSPNG  208 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~---------------------------------------------~~~~~--~~v~~~~~s~~~  208 (247)
                      .+++|+.+.+-.++..                                             +..+.  +--..+.|||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence            9999998764211100                                             00110  112358999999


Q ss_pred             CEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         209 KYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ++|++|+.||.+.+||.++...+.....
T Consensus       445 ~~l~SGdsdG~v~~wdwkt~kl~~~lka  472 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDWKTTKLVSKLKA  472 (503)
T ss_pred             CeEEeecCCccEEEeechhhhhhhcccc
Confidence            9999999999999999988665444433

>KOG0640|consensus

Probab=99.97  E-value=3.8e-30  Score=190.45  Aligned_cols=226  Identities=28%  Similarity=0.505  Sum_probs=190.9

Q ss_pred             CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC------------------eEEEEEecccCCeE
Q psy4393          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------------------KFEKTISGHKLGIS   73 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~------------------~~~~~~~~~~~~v~   73 (247)
                      .|+|.-.....+..|..++.+.+|+|||.++|+|+.|-.|+|+|++..                  ...+.+-.|-..|+
T Consensus        97 s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn  176 (430)
T KOG0640|consen   97 SPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN  176 (430)
T ss_pred             CCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc
Confidence            355555555667789999999999999999999999999999997510                  12334455777899


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee--
Q psy4393          74 DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--  149 (247)
Q Consensus        74 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--  149 (247)
                      ++.|+|-...|++++.|++|+++|+......+.++  .....+.++.|+|.|.+++.|.....+++||+.+.++...-  
T Consensus       177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence            99999999999999999999999997643222222  23567999999999999999999999999999998875443  


Q ss_pred             -cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         150 -PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       150 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                       ..|.+.|+++.+++.+++.++++.||.|++||--+++++.++...+ +..|....|..+|+|+++.+.|..+++|++.+
T Consensus       257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence             3577899999999999999999999999999999999888876654 46788899999999999999999999999999


Q ss_pred             cceEEEEccC
Q psy4393         228 VTPAIICSTP  237 (247)
Q Consensus       228 ~~~~~~~~~~  237 (247)
                      +.++.+|.+.
T Consensus       337 ~R~l~~YtGA  346 (430)
T KOG0640|consen  337 GRMLKEYTGA  346 (430)
T ss_pred             CceEEEEecC
Confidence            9999998775

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.5e-28  Score=190.41  Aligned_cols=216  Identities=40%  Similarity=0.742  Sum_probs=190.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      ..+..|...+..+.|+|+++++++++.+|.+++|+..+++....+..+...+.++.|+++++.+++++.++.+.+||+.+
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            44567888999999999999999999999999999988777778888888899999999988888888899999999998


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ++....+..+...+.++.|+|++.++++++.++.+++||++.++.+..+..|...+.++.|+|++..+++++.++.+.+|
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  204 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW  204 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence            88888888888889999999999999988889999999999888888888888899999999999999999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      |+..++....+. .+...+..+.|+|++.++++++.||.|++||.+...+...+..+
T Consensus       205 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         205 DLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             ECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            999877665542 34457899999999888888888999999999987776666543

>KOG0273|consensus

Probab=99.97  E-value=9.1e-30  Score=197.27  Aligned_cols=213  Identities=27%  Similarity=0.484  Sum_probs=189.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ...|++++|+.+|..||+|+.||.+++|+. ++.....+..|.++|.++.|+..|.+|++++.|+++.+||..++.....
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            467999999999999999999999999986 6777788899999999999999999999999999999999999998888


Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      +..|..+...+.|-.+ ..+++++.|+.|+|+-+....++..+..|.++|.++.|+|.+.+|++++.|+++++|......
T Consensus       314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence            8878777667788654 568999999999999999888999999999999999999999999999999999999987766


Q ss_pred             eeeeeccCCCCCeEEEEECCCC---------CEEEEEEcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNG---------KYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY  242 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  242 (247)
                      ....+ ..+...|..+.|+|.|         ..+++++.|++|++||...+.|+-++..+.++.|
T Consensus       393 ~~~~l-~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy  456 (524)
T KOG0273|consen  393 SVHDL-QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY  456 (524)
T ss_pred             chhhh-hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence            55544 3455667888999864         4889999999999999999999999988888765

>KOG0291|consensus

Probab=99.97  E-value=2.1e-29  Score=205.13  Aligned_cols=210  Identities=26%  Similarity=0.546  Sum_probs=185.7

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      +.+...+.--..+|..++|+..|.+||.|+ .-|.+.||+......+-+..+|...+++++++|||+++++|+.||.|++
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            334444433346899999999999999865 4589999999888888888999999999999999999999999999999


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECCCCCEEEEecCC
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      ||...+-|..++..|.+.|..+.|+..++.+++.+-||+|+.||+...+..+.+.... ....|++.+|.|.++.+|+.|
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d  456 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD  456 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc
Confidence            9999999999999999999999999999999999999999999999998888886532 346789999999999999988


Q ss_pred             C-eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         175 G-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       175 g-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      . .|.+|++.+|+.+.. ..+|.+||.+++|+|++..|++++.|.+|++||.-.
T Consensus       457 ~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  457 SFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             eEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence            6 799999999997765 456778999999999999999999999999999743

>KOG0296|consensus

Probab=99.97  E-value=1.5e-29  Score=190.48  Aligned_cols=221  Identities=21%  Similarity=0.368  Sum_probs=186.2

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..+.+.+|...|+++.|+.+|.+||+|+.+|.|+||...++.....+...-..+.-+.|+|-+..+++|+.||.+.+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            45678899999999999999999999999999999999999988888766677889999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-------------------------
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------------------------  153 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------------  153 (247)
                      .++...+.+.+|..++.+=.|.|+|+.++++..||+|++||+.+++++..+....                         
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            9877788899999999999999999999999999999999999988766554100                         


Q ss_pred             --------------------------CCeEEEE---ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE
Q psy4393         154 --------------------------DPVSAVH---FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF  204 (247)
Q Consensus       154 --------------------------~~i~~~~---~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~  204 (247)
                                                ..+.++.   ++..-.+.|+|+-||.|.+||+...+..+..  .+..+|..+.|
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w  335 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKW  335 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEE
Confidence                                      0011122   2223346788999999999999877654433  34556999999


Q ss_pred             CCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393         205 SPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY  242 (247)
Q Consensus       205 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  242 (247)
                      -+ ..+|++++.+|.|+.||.++++.+.+|..+....+
T Consensus       336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il  372 (399)
T KOG0296|consen  336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL  372 (399)
T ss_pred             cC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence            99 78999999999999999999999999999876543

>KOG0315|consensus

Probab=99.97  E-value=8.3e-29  Score=178.06  Aligned_cols=200  Identities=24%  Similarity=0.534  Sum_probs=170.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      .+.|..+...|+++.||+++ ...|++||+.+++  .+..+.+|...|+.+.|..+|+.++++++||+++|||++...+.
T Consensus        40 dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q  118 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ  118 (311)
T ss_pred             ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence            46799999999999999876 4579999997654  57788899999999999999999999999999999999986666


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      +.++ +.++|.++..+|+...|++|..+|.|++||+....+...+ +....++.++...|||..++++...|...+|++-
T Consensus       119 R~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  119 RNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             hhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            6555 5689999999999999999999999999999987655543 3445689999999999999999999999999987


Q ss_pred             Cceeeeee-----ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         184 SGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       184 ~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.+....+     +..+..-+..+.+|||+++||+++.|.+++||+..+.
T Consensus       198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            65432222     2345667788899999999999999999999999887

>KOG0289|consensus

Probab=99.97  E-value=3.5e-29  Score=192.35  Aligned_cols=217  Identities=25%  Similarity=0.426  Sum_probs=192.3

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..+++||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.++++++.|+...+.|++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            34678999999999999999999999999999999988777777888899999999999999999999999999999999


Q ss_pred             CceEEEEEecC--CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         100 SGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       100 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ++..+......  .-.+.+..|+|||.++.+|..|+.+++||+.++..+..|..|.++|..++|+.+|-+|++++.|+.|
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            99877666542  2347889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc--ceEEEEcc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV--TPAIICST  236 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~  236 (247)
                      ++||++..+..+++.......+..+.|++.|++|+.++.|=+|++++.+.+  +.+..+..
T Consensus       414 ~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~  474 (506)
T KOG0289|consen  414 KLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD  474 (506)
T ss_pred             EEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence            999999988888887777778999999999999999988888888885543  34444333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.9e-28  Score=213.28  Aligned_cols=212  Identities=23%  Similarity=0.434  Sum_probs=174.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----e----EEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----K----FEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKI   95 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v   95 (247)
                      .|...|.+++|+|+|+++++|+.|+.|++|+....    .    ....+. +...+.+++|++ ++..+++++.||.|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            48899999999999999999999999999997431    1    112222 345788999987 4788999999999999


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC-CCCCEEEEecC
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSY  173 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  173 (247)
                      ||+.+++.+..+.+|...|.+++|+| ++.++++|+.|+.|++||++++..+..+..+ ..+.++.|+ +++.++++|+.
T Consensus       560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence            99999998889999999999999997 7889999999999999999998888777654 578899995 57899999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc------ceEEEEccCCc
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV------TPAIICSTPLN  239 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~  239 (247)
                      ||.|++||+++.+........+...|..+.|. ++.+|++++.|+.|++||.+..      .++..+..+..
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN  709 (793)
T ss_pred             CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence            99999999987653222234566789999997 6789999999999999998742      45555554433

>KOG0296|consensus

Probab=99.97  E-value=2.2e-28  Score=184.28  Aligned_cols=216  Identities=21%  Similarity=0.386  Sum_probs=198.6

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..++..|+.+|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+|+||+-+|.|++|+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ++.....+......+..+.|+|.+..+++|+.||.+-+|.+.++...+.+..|..++++=.|.|+|+.++++..||+|++
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~  216 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV  216 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence            99888777666677888999999999999999999999999998778889999999999999999999999999999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ||+.+++++......+.....++.++..+..++.|..++.+++-...+++.+...+
T Consensus       217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN  272 (399)
T ss_pred             EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence            99999999888776666677889999999999999999999999888887766655

>KOG0283|consensus

Probab=99.97  E-value=5.8e-29  Score=204.62  Aligned_cols=209  Identities=28%  Similarity=0.566  Sum_probs=171.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------------------------------C-------------
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--------------------------------G-------------   59 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--------------------------------~-------------   59 (247)
                      .|.+.|.++.|++||++||+|++|+.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999997644                                0             


Q ss_pred             ---------------eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CC
Q psy4393          60 ---------------KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QS  123 (247)
Q Consensus        60 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~  123 (247)
                                     +....+.+|...|.++.|+.+ ++|++++.|.++++|++....+++.|. |.+.|+|++|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence                           001224467788999999975 589999999999999999999998776 889999999999 77


Q ss_pred             CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------CC
Q psy4393         124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DN  196 (247)
Q Consensus       124 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~  196 (247)
                      ++|++|+-|+.++||++...+.+.-... ..-|++++|.|||+..++|+.+|.+++|+....+........       ..
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            8999999999999999987765554444 368999999999999999999999999999887765443211       12


Q ss_pred             CCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         197 PPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       197 ~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ..|+.+.|.|... .|++.+.|.+|||||.++..++..+-+
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG  542 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG  542 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence            3699999987544 588888899999999977655544433

>KOG0316|consensus

Probab=99.97  E-value=1.1e-28  Score=176.14  Aligned_cols=219  Identities=25%  Similarity=0.412  Sum_probs=187.9

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      .+-.++.+|...|..++.+.|...+++|+.|..+.+||+.+++....+.+|...|+.+.|+.+...+++|+-|..+++||
T Consensus        50 ~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   50 ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          98 LSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .+..  ++++.+....+.|.++..+  +..|++|+.||+++.||++.|+......  ..||++++|+++++..++++.|+
T Consensus       130 CRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  130 CRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             cccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccc
Confidence            8764  5666777777778777766  5689999999999999999998655443  45899999999999999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCe-EEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPV-SFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      .+++.|-.+++.++.+..+.+... ..++++....++++|++||.|.+||+-+...+..+..+..+
T Consensus       206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence            999999999998887755443322 23567888889999999999999999888777666655544

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.6e-27  Score=196.51  Aligned_cols=203  Identities=22%  Similarity=0.377  Sum_probs=165.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEE-------------EEEecccCCeEEEEECC-CCCEEEEEcCCCe
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTISGHKLGISDVAWSS-DSRLLVSGSDDKT   92 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   92 (247)
                      -..|.....++++..+++++.+.....|+...+...             ..+.+|...|.+++|+| ++++|++++.|+.
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            345555666777666677777766677765433221             23678899999999999 8889999999999


Q ss_pred             EEEEECCCc-------eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC
Q psy4393          93 LKIWELSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (247)
Q Consensus        93 i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  164 (247)
                      |++||+.++       ..+..+.+|...|.+++|+|++ +++++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            999999764       2456788899999999999975 69999999999999999999988889899999999999999


Q ss_pred             CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEEECCCcc
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSKVVT  229 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~  229 (247)
                      +.+|++++.|+.|++||+++++.+..+..+.......+.|.+++..+++++    .|+.|++||.+...
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            999999999999999999998877666544334445678999888887654    47899999998653

>KOG0318|consensus

Probab=99.97  E-value=8.9e-28  Score=188.62  Aligned_cols=217  Identities=24%  Similarity=0.425  Sum_probs=183.2

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCC----CeE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTL   93 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i   93 (247)
                      ...+.+|...++-.+|+|.|.++|+|...|.|+|||.....  +..++....++|.+++|++++++|++.++.    |.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            34456799999999999999999999999999999976532  344566667889999999999999887653    345


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      .+||  ++..+..+.+|...+.+++|-|... .+++|++|+.+.+|+-...+-...+..|...|.|+.|+|||.++++++
T Consensus       132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence            5666  5667788999999999999998654 589999999999999776666667788999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         173 YDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      .||++.+||-.+++.+..+.  ..+.+.|..++|+||++.+++++.|.+++|||..+.....++.-..
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~  277 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS  277 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence            99999999999999887775  2567889999999999999999999999999998876665554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.4e-27  Score=209.86  Aligned_cols=206  Identities=27%  Similarity=0.445  Sum_probs=175.7

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCceE
Q psy4393          26 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        26 h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      +...|.+++|++ ++.+|++++.||.|++||..+++....+.+|...|.+++|+| ++.+|++++.|+.|++||+.++..
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            346789999987 478999999999999999998888888899999999999997 788999999999999999999888


Q ss_pred             EEEEecCCccEEEEEEc-CCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         104 LKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      +..+..+ ..+.++.|+ +++..+++|+.|+.|++||++... .+..+..|...|.++.|. ++..+++++.|+.|++||
T Consensus       611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence            8777754 568888884 578999999999999999998765 466778899999999997 678899999999999999


Q ss_pred             CCCc------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         182 TASG------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       182 ~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      ++.+      +.+..+ ..+...+..++|+|++++|++|+.||.|++|+.....++..+
T Consensus       689 ~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~  746 (793)
T PLN00181        689 LSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY  746 (793)
T ss_pred             CCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence            9743      233333 345567888999999999999999999999998776655443

>KOG0310|consensus

Probab=99.97  E-value=7.5e-29  Score=192.85  Aligned_cols=201  Identities=30%  Similarity=0.555  Sum_probs=171.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ....|.++.|-.||++|++|+..|.|+++|..+...+..+..|..++....|+|++ ..+++|++|+.+++||+.+....
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~  146 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ  146 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence            45779999999999999999999999999965545566778899999999999965 56778888999999999988876


Q ss_pred             EEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         105 KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      ..+.+|.+.|.|.+|+|.. .++++|+-||.|++||+++.. .+.++ .|..||..+.+-|.|..+++++ ...+++||+
T Consensus       147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl  224 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDL  224 (487)
T ss_pred             EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEe
Confidence            6889999999999999964 588999999999999999874 44444 6788999999999999998876 568999999


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .+|..+......|...|+|+.+..++..|++++.|+.+++||..+.
T Consensus       225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            8665444444446778999999999999999999999999996543

>KOG0645|consensus

Probab=99.97  E-value=1.2e-27  Score=174.00  Aligned_cols=203  Identities=31%  Similarity=0.555  Sum_probs=174.9

Q ss_pred             ceEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          17 YVLKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        17 ~~~~~~~-~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      +..+..+ .+|++.|.+++|+|.|++|++|+-|.++.||...++  ++...+.+|...|.+++|+++|++||+++.|..|
T Consensus        50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV  129 (312)
T KOG0645|consen   50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV  129 (312)
T ss_pred             EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence            3444344 379999999999999999999999999999987655  4567789999999999999999999999999999


Q ss_pred             EEEECCCc---eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC---CCeEEEeecCCCCCeEEEEECCCCCE
Q psy4393          94 KIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        94 ~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      .+|.+..+   .+...++.|...|..+.|+|...+|++++-|.+|++|+-.   ...+...+..|...+.+++|+|.|..
T Consensus       130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR  209 (312)
T ss_pred             EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence            99998743   4667889999999999999999999999999999999766   33578889999999999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |++++.|+.++||...+     .+...+..++..++|.  ...|++++.|+.|++|.-.
T Consensus       210 l~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  210 LVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             EEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            99999999999997552     2333455678889998  4589999999999999754

>KOG0275|consensus

Probab=99.97  E-value=5.7e-30  Score=190.81  Aligned_cols=206  Identities=32%  Similarity=0.620  Sum_probs=177.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--------ecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--------SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +..+-+-|..|+|||++|++|+.||.|.+|+..+++....+        --++.+|.++.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            44566789999999999999999999999999888755433        2356789999999999999999999999999


Q ss_pred             ECCCceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          97 ELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        97 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .+.+|.+++.+. +|...|.|+.|+.++..+++++.|..+++.-+.+|++++.+++|...|+.+.|.++|.++++++.||
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            999999998886 8888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCceeeeeecc----------------------------------------------CCCCCeEEEEECCCCC
Q psy4393         176 LCRIWDTASGQCLKTLID----------------------------------------------DDNPPVSFVKFSPNGK  209 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~----------------------------------------------~~~~~v~~~~~s~~~~  209 (247)
                      ++++|+..+.+++.++..                                              .+.+...+...+|.|.
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence            999999987654433210                                              0112234567889999


Q ss_pred             EEEEEEcCCeEEEEECCCcce
Q psy4393         210 YILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++++.+.|+.++-|....++.
T Consensus       451 wiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             EEEEEccCcEEEEEEeecCce
Confidence            999999999999888766543

>KOG0643|consensus

Probab=99.97  E-value=5.1e-28  Score=175.63  Aligned_cols=203  Identities=24%  Similarity=0.380  Sum_probs=174.8

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-----CCeEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----DKTLKI   95 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v   95 (247)
                      -++.||++.|.|+..+-+.+++++|+.|.++++||+++++.+..+.. ..+|..+.|+++|++++...+     .+.|.+
T Consensus        46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~  124 (327)
T KOG0643|consen   46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV  124 (327)
T ss_pred             eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence            46789999999999999999999999999999999999999888864 567999999999998877654     468999


Q ss_pred             EECCC-------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCE
Q psy4393          96 WELSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        96 ~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      +|++.       .++...+..+.+.+..+.|.|-+..|++|.++|.|..||++++. .+.....|...|+.|+++||..+
T Consensus       125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY  204 (327)
T ss_pred             EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence            99873       34566677777889999999999999999999999999999985 45566788899999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeee------------------------------------------------------cc
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTL------------------------------------------------------ID  193 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~------------------------------------------------------~~  193 (247)
                      +++++.|.+-++||.++.+.++++                                                      ..
T Consensus       205 FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  205 FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence            999999999999999876544432                                                      12


Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       194 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      .|-+||+.++|+|+|+..++|++||.|++.-
T Consensus       285 GHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            3456799999999999999999999999873

>KOG0278|consensus

Probab=99.97  E-value=4e-29  Score=179.93  Aligned_cols=204  Identities=24%  Similarity=0.444  Sum_probs=179.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .|..-|.+++|+.|.++|++|+.+..++|||....+ ....+.+|..+|..+.|+...+.|++.+.|+.|++||.+++..
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            577889999999999999999999999999987544 3456889999999999999889999999999999999999999


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      ++.+.. ...|.++.++++|.++.++. .+.|.+||..+...++..+. +..|.+...+|+...+++|+.|..++.||..
T Consensus       178 v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  178 VQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             EEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEecc
Confidence            988874 45688999999998777654 56899999999888888765 3468888999999999999999999999999


Q ss_pred             CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      +++.+..+...+.++|.++.|+|||...++|++||+|++|....+++.
T Consensus       255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            998887766677889999999999999999999999999998766543

>KOG0292|consensus

Probab=99.97  E-value=1.7e-28  Score=203.08  Aligned_cols=211  Identities=30%  Similarity=0.523  Sum_probs=186.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+|.++|..+.|+|++.++++|+.|-.|++|+..+.++..++.+|..-|..+.|++.--+|+++++|.+|++|+..+.++
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~  127 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC  127 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-----------------------------EEEeecCCCC
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-----------------------------CLKTLPAHSD  154 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----------------------------~~~~~~~~~~  154 (247)
                      +..+++|...|.|..|+|...++++++-|.+|++||+..-+                             ....+.+|..
T Consensus       128 iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR  207 (1202)
T KOG0292|consen  128 IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR  207 (1202)
T ss_pred             EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence            99999999999999999999999999999999999984210                             0133567888


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .|+-++|+|.-.++++|+.|..|++|.+...+. ......+|...|+++-|+|...++++.++|+.|+|||+.--+++-.
T Consensus       208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t  287 (1202)
T KOG0292|consen  208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT  287 (1202)
T ss_pred             ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence            899999999999999999999999998765432 2233445667899999999999999999999999999876665555


Q ss_pred             E
Q psy4393         234 C  234 (247)
Q Consensus       234 ~  234 (247)
                      +
T Consensus       288 f  288 (1202)
T KOG0292|consen  288 F  288 (1202)
T ss_pred             e
Confidence            4

>KOG0319|consensus

Probab=99.96  E-value=1.5e-28  Score=199.57  Aligned_cols=203  Identities=33%  Similarity=0.558  Sum_probs=183.2

Q ss_pred             ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeE---EE------EEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF---EK------TISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~---~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      .+|+..|.+++++..+. ++++++.|.++++|++...+.   ..      ....|+..|++++.+|+.++|+||+.|.+.
T Consensus       408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta  487 (775)
T KOG0319|consen  408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA  487 (775)
T ss_pred             cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence            47999999999987654 788999999999999865211   11      123588889999999999999999999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ++|++++......+.+|...++++.|+|..+.++|++.|.+|++|.+.+..+++.+.+|...|..+.|-.+++.|++++.
T Consensus       488 KiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a  567 (775)
T KOG0319|consen  488 KIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA  567 (775)
T ss_pred             eeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ||.+++|++.++++..++ ..|...|..++.+|...++++|+.||+|.+|.-.+
T Consensus       568 dGliKlWnikt~eC~~tl-D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  568 DGLIKLWNIKTNECEMTL-DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             CCcEEEEeccchhhhhhh-hhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            999999999999998875 45667899999999999999999999999996433

>KOG0276|consensus

Probab=99.96  E-value=3.7e-28  Score=194.38  Aligned_cols=203  Identities=29%  Similarity=0.546  Sum_probs=186.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc-eEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLK  105 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~  105 (247)
                      ..+|.+.+|-+-.+++++|+.|..|+||+..+++.+..+..|..-|++++.+|..-+++++++|-.|++||.+.+ .+.+
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999865 5778


Q ss_pred             EEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC--CEEEEecCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~v~d~  182 (247)
                      .+.+|...|.+++|+| |.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+-|  .+|++|+.|..+++||.
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            8999999999999999 67899999999999999999999999999999999999998744  69999999999999999


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .+.++++++. +|...|+.+.|+|.=..+++|++||+++||...+-..
T Consensus       215 Qtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  215 QTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             chHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            9999888764 4566799999999999999999999999999876543

>KOG1407|consensus

Probab=99.96  E-value=5.4e-28  Score=174.93  Aligned_cols=211  Identities=27%  Similarity=0.513  Sum_probs=176.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE--EEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d   97 (247)
                      ..+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+...  ...+|...|..++|+| ....+++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4566899999999999999999999999999999998665443  3467888899999988 456899999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---------------------------------
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---------------------------------  144 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------------------------  144 (247)
                      .+.+++...+....+.+. +.|+|++++++.++.|..|...|.++.+                                 
T Consensus        94 ~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            999998887776555554 6799999999999999999998886522                                 


Q ss_pred             --------EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc
Q psy4393         145 --------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       145 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  216 (247)
                              ++..+++|...+.|+.|+|+|++||+|+.|..+.+||+...-+.+.+ .....||..++|+.||++||++++
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCc
Confidence                    23445678888889999999999999999999999999876665554 345689999999999999999999


Q ss_pred             CCeEEEEECCCcceEEE
Q psy4393         217 DNTLKLWDSKVVTPAII  233 (247)
Q Consensus       217 dg~i~vwd~~~~~~~~~  233 (247)
                      |..|-|=+..++..+-.
T Consensus       252 Dh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  252 DHFIDIAEVETGDRVWE  268 (313)
T ss_pred             cceEEeEecccCCeEEE
Confidence            99998887777654433

>KOG0277|consensus

Probab=99.96  E-value=2.7e-28  Score=175.89  Aligned_cols=203  Identities=24%  Similarity=0.471  Sum_probs=171.7

Q ss_pred             cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCC-CeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .-...+..++|+++. +.+++++.||.+++||... ......++.|...|.++.|++ .++.+++++.|++|++|+...+
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            346778899999965 4677889999999999532 345566788999999999998 4566788899999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCCEEEEecCCCeEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI  179 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v  179 (247)
                      +.+.++++|...|....|+| ..+++++++.|+.+++||++.......+.+|...+.++.|++ +...+++|+.|+.|+.
T Consensus       138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence            99999999999999999999 568999999999999999987655555889998999999997 5568899999999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCC
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~  227 (247)
                      ||+++.+.....+..+...|..++|||.. ..|++++.|-+++|||...
T Consensus       218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             EehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence            99998654433346777889999999975 5788999999999999763

>KOG0265|consensus

Probab=99.96  E-value=8.9e-28  Score=176.83  Aligned_cols=207  Identities=29%  Similarity=0.548  Sum_probs=177.1

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~  100 (247)
                      .+++|.++|..+.|.+|++.|++++.|.+++.||+++++.....++|..-|+.+.-+.-| .++.+++.|+++++||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            445899999999999999999999999999999999999999999998888887733333 4577889999999999998


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ...++.+. ....+.++.|..++..+.+|+-|+.|++||++.+.....+.+|..+|+.+..+|+|.++.+-+.|.++++|
T Consensus       165 k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  165 KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence            88777664 34568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCce----eeeeeccC-C--CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         181 DTASGQ----CLKTLIDD-D--NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       181 d~~~~~----~~~~~~~~-~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      |++...    ++..+..+ +  ......++|+|+++.+.+|+.|..+.+||.....
T Consensus       244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~  299 (338)
T KOG0265|consen  244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR  299 (338)
T ss_pred             EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence            998532    23333322 1  1233457899999999999999999999987643

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.4e-26  Score=192.18  Aligned_cols=194  Identities=23%  Similarity=0.371  Sum_probs=156.8

Q ss_pred             EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCCce--------EEEEEecCCccEE
Q psy4393          45 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK--------CLKTLKGHSNYVF  115 (247)
Q Consensus        45 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~v~  115 (247)
                      |+.++.+++|+.........+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999998776677788899999999999996 7899999999999999997542        2345778889999


Q ss_pred             EEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy4393         116 CCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD  194 (247)
Q Consensus       116 ~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  194 (247)
                      +++|+|++.. +++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.|+.+++||+++++.+..+..+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 5788999999999999988776665 4578999999999999999999999999999999877665443


Q ss_pred             CCC----CeEEEEECCCCCEEEEEEcCC----eEEEEECCC-cceEEEEccCCc
Q psy4393         195 DNP----PVSFVKFSPNGKYILAATLDN----TLKLWDSKV-VTPAIICSTPLN  239 (247)
Q Consensus       195 ~~~----~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~  239 (247)
                      ...    .+....|++++.+|++++.|+    .|+|||.+. ..|+........
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~  262 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA  262 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence            322    122334678999999988774    799999995 566655544333

>KOG0285|consensus

Probab=99.96  E-value=1.2e-27  Score=180.09  Aligned_cols=210  Identities=29%  Similarity=0.522  Sum_probs=180.2

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..++.++.||...|..+++|+--.+|++++.|+.|+-||++..+..+.+.+|-.+|.+++.+|.-..|++++.|..+++|
T Consensus       183 g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  183 GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW  262 (460)
T ss_pred             CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEe
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEE----------------
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH----------------  160 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~----------------  160 (247)
                      |+++...+..+.+|...|..+.+.|....+++|+-|++|++||++.++....+..|...+.+++                
T Consensus       263 DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dni  342 (460)
T KOG0285|consen  263 DIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNI  342 (460)
T ss_pred             eecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccc
Confidence            9999999999999999999999999888999999999999999998876655555544444444                


Q ss_pred             -------------------------ECCCCCEEEEecCCCeEEEEeCCCceeeeee---cc----CCCCCeEEEEECCCC
Q psy4393         161 -------------------------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---ID----DDNPPVSFVKFSPNG  208 (247)
Q Consensus       161 -------------------------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~----~~~~~v~~~~~s~~~  208 (247)
                                               .+.|+ ++++|+.+|.+.+||-+++...+..   ..    ..+..|.+.+|+..|
T Consensus       343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence                                     33333 5678888899999999887554433   11    124567888999999


Q ss_pred             CEEEEEEcCCeEEEEECCC
Q psy4393         209 KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..|++|..|.+|++|.-+.
T Consensus       422 ~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ceEEeccCCcceEEEeccc
Confidence            9999999999999997543

>KOG0281|consensus

Probab=99.96  E-value=1.8e-29  Score=189.56  Aligned_cols=198  Identities=27%  Similarity=0.548  Sum_probs=173.3

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      +.+.||++.|.|+.|.  .+.+++|+.|.+|++||..+++....+..|...|..+.|+.  .++++++.|..+.+||+..
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccC
Confidence            4567999999999985  56889999999999999999999999999999999999974  6899999999999999976


Q ss_pred             ce---EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         101 GK---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       101 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ..   +.+.+.+|...|..+.|+.  +++++++.|++|++|++.+.+.+..+.+|...|.|+.+  .++++++|+.|.+|
T Consensus       307 ps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntI  382 (499)
T KOG0281|consen  307 PTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI  382 (499)
T ss_pred             chHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceE
Confidence            43   2345678888899888874  59999999999999999999999999999999998877  67899999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ++||+..|.+++.+. +++.-|.++.|+  .+.+++|+.||+|+|||.+.+.
T Consensus       383 Rlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  383 RLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             EEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence            999999999887654 455678889886  4679999999999999998764

>KOG0306|consensus

Probab=99.96  E-value=6.9e-28  Score=196.26  Aligned_cols=223  Identities=28%  Similarity=0.444  Sum_probs=190.7

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-----CeEEEEE-------ecccCCeEEEEECCCCCEEEEEc
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-----GKFEKTI-------SGHKLGISDVAWSSDSRLLVSGS   88 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-----~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~   88 (247)
                      .++.+|.+.|-+++.+||++.+++|+.|.+|++||..-     +.....+       -.-...|.++.++|||++++++-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            34568999999999999999999999999999998631     1111111       11245689999999999999999


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      -|.++++|-+.+-+....+.+|.-+|.|+..+|++++++||+.|..|++|-+.-|.+-+.+.+|...|.++.|-|....+
T Consensus       528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F  607 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF  607 (888)
T ss_pred             ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeE
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccccee
Q psy4393         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFY  244 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  244 (247)
                      .+++.|+.++-||...-+.++.+. .|...|.+++.+|+|.++++++.|..|++|+......++..+..-+.++.|
T Consensus       608 Ft~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~y  682 (888)
T KOG0306|consen  608 FTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEY  682 (888)
T ss_pred             EEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHH
Confidence            999999999999998877776654 455789999999999999999999999999976655555544444444443

>KOG0294|consensus

Probab=99.96  E-value=5.7e-27  Score=173.72  Aligned_cols=212  Identities=25%  Similarity=0.394  Sum_probs=172.2

Q ss_pred             CCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC--EEEEEcCC
Q psy4393          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR--LLVSGSDD   90 (247)
Q Consensus        13 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d   90 (247)
                      .++.+..-|.+..|.++|++++.+  +.++|+|+.|.+|+|||+........+..|.+.|+++.|.+.-.  .|++|+.|
T Consensus        29 ~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   29 VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             cceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence            345566778888999999999985  89999999999999999988888888888999999999998764  89999999


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC------------------
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------  152 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------  152 (247)
                      |.|.+|+...-..+..+++|...|..++.+|.+++.++.+.|+.++.||+-.|+.-......                  
T Consensus       107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999766532221110                  


Q ss_pred             ---------------------CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE--CCCCC
Q psy4393         153 ---------------------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGK  209 (247)
Q Consensus       153 ---------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~  209 (247)
                                           ...+.|+.|. ++..|++|+.++.|.+||..+..+...+ ..|...|..+.+  .|++.
T Consensus       187 ~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  187 GRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             eccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCce
Confidence                                 0113333332 4556788888899999998876655444 345556766653  57889


Q ss_pred             EEEEEEcCCeEEEEECCCc
Q psy4393         210 YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~  228 (247)
                      +|++++.||.|+|||.++.
T Consensus       265 ~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEEeccCceEEEEEcccc
Confidence            9999999999999999876

>KOG0319|consensus

Probab=99.96  E-value=3.8e-28  Score=197.27  Aligned_cols=215  Identities=31%  Similarity=0.504  Sum_probs=185.8

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe----EEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIW   96 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~   96 (247)
                      -+.||...|.++.-..+|-+|++|++|.++++|.+.++.    +.....+|...|.+++++..+ .++++++.|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            567999999999966778899999999999999874433    234457899999999997643 578999999999999


Q ss_pred             ECCCceE-----EE----EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCE
Q psy4393          97 ELSSGKC-----LK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        97 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      ++...+.     ..    ....|...|++++++|+..+++||+.|+..++|++...+....+.+|...+.++.|+|..+.
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            9876321     11    22468889999999999999999999999999999998999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +++++.|++|++|.+.+..+++++. +|...|..+.|-.+|+.|++++.||-+++|+.++..+..++-.|
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            9999999999999999999999875 45567888899999999999999999999999998877665444

>KOG0276|consensus

Probab=99.96  E-value=9.5e-28  Score=192.06  Aligned_cols=218  Identities=22%  Similarity=0.427  Sum_probs=196.0

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      .++..|..+|.++.|+|...+++++-.+|.|.||+.++...+..+.....+|++..|-+-.+.+++|++|..|++|+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            34556889999999999999999999999999999999989999988888999999999889999999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECC-CCCEEEEecCCCeEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCR  178 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  178 (247)
                      ++.++.+.+|.+.|++++.+|...++++++.|-.|++||-... .+.+.+.+|...|.+++|+| |...+++++.|++|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            9999999999999999999999999999999999999998754 56788999999999999999 456899999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +|.+.+..+..++. .|...|+++.+-+  |..+|++|+.|..|+|||.++++++-++.++..
T Consensus       167 VWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~  228 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN  228 (794)
T ss_pred             EEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence            99999887777765 5667899999876  457999999999999999999887766665544

>KOG1446|consensus

Probab=99.96  E-value=5e-26  Score=168.74  Aligned_cols=216  Identities=27%  Similarity=0.429  Sum_probs=183.7

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC--CCeEEEEECCCc
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD--DKTLKIWELSSG  101 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~  101 (247)
                      ..-...|.++.|+++|.+|++++.|..+++||..+++....+..+..++..+.|......++.++.  |.+|+..++.+.
T Consensus        11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            335778999999999999999999999999999999999999888888888899877666666665  889999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      +.++.+.+|...|..++.+|-+..+++++.|++|++||+|..++.-.+.....++  .+|+|.|-++|++.....|++||
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEE
Confidence            9999999999999999999999999999999999999999887766655544443  68999999999998888999999


Q ss_pred             CCCc--eeeeee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccc
Q psy4393         182 TASG--QCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN  241 (247)
Q Consensus       182 ~~~~--~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  241 (247)
                      ++.-  .+..++  .......++.+.|||||++++.++..+.+++.|.-++..+-.++.+...+
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence            9863  222222  22345678999999999999999999999999999988777766665544

>KOG0274|consensus

Probab=99.96  E-value=8.2e-27  Score=192.79  Aligned_cols=213  Identities=32%  Similarity=0.639  Sum_probs=187.2

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +.+...+.+|.+.|.+++|...+.+|++|+.|.++++||..++.+...+.+|...+.++...+  ..+++|+.|.+|++|
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVW  316 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEE
Confidence            334444889999999999988788999999999999999999999999999999998887653  567888999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      ++.++..+..+.+|.++|.++..+  +.++++|+.|+.|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|+.
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~  393 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT  393 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence            999999999999999999999888  789999999999999999999999999999999999988765 88999999999


Q ss_pred             EEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         177 CRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       177 i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      |++||+++. +++..+.. +...+..+  ...+++|++++.||.|++||..+.+.+.++..+
T Consensus       394 IkvWdl~~~~~c~~tl~~-h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQG-HTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             eEeecCCchhhhhhhhcC-Cccccccc--ccccceeEeccccccEEEeecccCceeeeeccC
Confidence            999999998 77666543 33344433  455789999999999999999999999888884

>KOG1446|consensus

Probab=99.96  E-value=1.1e-25  Score=166.88  Aligned_cols=216  Identities=22%  Similarity=0.365  Sum_probs=179.9

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ...++..++..|..++|......++.++.  |.+|+..++.+.+.++-+.+|...|.++..+|-++.+++++.|++|++|
T Consensus        48 ~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLW  127 (311)
T KOG1446|consen   48 QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLW  127 (311)
T ss_pred             eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEee
Confidence            44566667788999999877776666665  8899999999999999999999999999999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC--eEEEeec---CCCCCeEEEEECCCCCEEEEe
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLP---AHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      |++..++...+.....+  .++++|+|-++|++.....|++||+|+-  .+...+.   ......+.|.|+|||++++.+
T Consensus       128 DlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls  205 (311)
T KOG1446|consen  128 DLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS  205 (311)
T ss_pred             EecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence            99987776666544433  4689999999999988889999999864  2333333   234568899999999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCC---CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +..+.+.+.|.-+|..+..+.....   .+ ....|+||++++++|+.||+|.+|+.+++.++...+.+
T Consensus       206 T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  206 TNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             eCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            9999999999999987777654322   22 35679999999999999999999999999988888875

>KOG0282|consensus

Probab=99.96  E-value=4.5e-28  Score=188.39  Aligned_cols=204  Identities=25%  Similarity=0.458  Sum_probs=172.9

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d   97 (247)
                      ...++.+|..+|..++|+++|..+++++.|+.+++||.++|++...+.. ...+.++.|.|++ +.+++|+.|+.|+.||
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            4456679999999999999999999999999999999999999888864 3457899999998 7889999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-----------------------------
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-----------------------------  148 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-----------------------------  148 (247)
                      +++++.++....|-+.|..+.|-+++..+++.+.|+.+++|+.+.+..++.                             
T Consensus       329 iRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  329 IRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             ccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence            999998888888889999999999999999999999999999875432110                             


Q ss_pred             -----------------ecCC--CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-
Q psy4393         149 -----------------LPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-  208 (247)
Q Consensus       149 -----------------~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-  208 (247)
                                       +..|  .+.-..+.|+|||.+|++|..+|.+.+||-.+-+....+. .+..++..+.|+|.. 
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEP  487 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCc
Confidence                             1112  1234557899999999999999999999999877666554 346788899999975 


Q ss_pred             CEEEEEEcCCeEEEEE
Q psy4393         209 KYILAATLDNTLKLWD  224 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd  224 (247)
                      ..+|+++.||.|++||
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            4788999999999996

>KOG0973|consensus

Probab=99.96  E-value=7.2e-27  Score=196.97  Aligned_cols=211  Identities=32%  Similarity=0.487  Sum_probs=179.7

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------------------CeEEEEEecccCCeEEEEEC
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------------------GKFEKTISGHKLGISDVAWS   78 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~   78 (247)
                      ..+..+...|.+.|.|+.|+|||++||+|+.|+.|.||....                  .+....+.+|...|.++.|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            345566778999999999999999999999999999998652                  12445678899999999999


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-------------
Q psy4393          79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-------------  145 (247)
Q Consensus        79 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------  145 (247)
                      |++.++++++.|+.|.+||..+.+.++.+++|.+.|-.+.|+|-|++||+-+.|+.|++|++.+...             
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999643111             


Q ss_pred             ---------------------------------------EEeecCCCCCeEEEEECCC-----CC------------EEE
Q psy4393         146 ---------------------------------------LKTLPAHSDPVSAVHFNRD-----GS------------LIV  169 (247)
Q Consensus       146 ---------------------------------------~~~~~~~~~~i~~~~~~~~-----~~------------~l~  169 (247)
                                                             -..+-+|..++.+++|+|.     ..            .+|
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence                                                   1223467889999999872     11            678


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +|+.|+.+.||.....+++.....-....|..++|+|||-.|++++.||+|.+.....
T Consensus       299 vgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  299 VGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            9999999999998877766555444567899999999999999999999999998654

>KOG0264|consensus

Probab=99.96  E-value=4.2e-27  Score=181.67  Aligned_cols=225  Identities=28%  Similarity=0.462  Sum_probs=177.4

Q ss_pred             CCCCCCCCCCCCCCCceEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCe-------EEEEEecccCCeE
Q psy4393           2 NLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK-------FEKTISGHKLGIS   73 (247)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~   73 (247)
                      |.++.+..+.... ......++.+|.+.-.+++|++... .|++++.|+.|++||+....       ....+.+|...|.
T Consensus       153 d~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve  231 (422)
T KOG0264|consen  153 DYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE  231 (422)
T ss_pred             EeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee
Confidence            4455554433111 3344567779998888999999655 68889999999999985322       2345788999999


Q ss_pred             EEEECC-CCCEEEEEcCCCeEEEEECC--CceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCC-eEEEe
Q psy4393          74 DVAWSS-DSRLLVSGSDDKTLKIWELS--SGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG-KCLKT  148 (247)
Q Consensus        74 ~~~~~~-~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~  148 (247)
                      +++|++ +.+.+++++.|+.+.|||++  +.+..+...+|...+.|++|+| ++.+||+|+.|++|++||+|+- +++..
T Consensus       232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~  311 (422)
T KOG0264|consen  232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT  311 (422)
T ss_pred             hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence            999998 45678899999999999999  5666777889999999999999 4567899999999999999974 35778


Q ss_pred             ecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCceeee-------------eeccCCCCCeEEEEECCCCCEEE-E
Q psy4393         149 LPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYIL-A  213 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~-~  213 (247)
                      +..|...|.++.|+|+. ..||+++.|+.+.+||+..-...+             -...+|...|..+.|+|+..+++ +
T Consensus       312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S  391 (422)
T KOG0264|consen  312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS  391 (422)
T ss_pred             ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence            88999999999999975 578899999999999987532221             11235667889999999988765 5


Q ss_pred             EEcCCeEEEEECCC
Q psy4393         214 ATLDNTLKLWDSKV  227 (247)
Q Consensus       214 ~~~dg~i~vwd~~~  227 (247)
                      .+.|+.+.||+...
T Consensus       392 vaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  392 VAEDNILQIWQMAE  405 (422)
T ss_pred             ecCCceEEEeeccc
Confidence            67899999998763

>KOG0292|consensus

Probab=99.96  E-value=1.7e-27  Score=197.23  Aligned_cols=203  Identities=29%  Similarity=0.568  Sum_probs=186.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ..+.+|.+++|+|...+++++--.|.|++||..-+.+...+..|+++|..+.|+|.+.++++|++|..|++|+.++.+++
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            34678999999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      .++.+|.+.|..+.|++.-..+++++.|.+|++|+.++.+++..+.+|...|.|.+|+|...++++++.|.+|++||+..
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999863


Q ss_pred             ce----------------------------eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         185 GQ----------------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       185 ~~----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+                            .++....+|...|+.++|+|.-..+++|+.|..|++|..+.
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            21                            12233455667889999999999999999999999998754

>KOG0647|consensus

Probab=99.96  E-value=1.3e-26  Score=170.98  Aligned_cols=214  Identities=27%  Similarity=0.429  Sum_probs=163.3

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC-eEE-EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          26 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFE-KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        26 h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      -...|.+++||| ...++++++.||+||+|+++.. ... .....|..+|.+++|+.||..+++++.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            357899999999 5556778999999999998763 332 2344578899999999999999999999999999999985


Q ss_pred             EEEEEecCCccEEEEEEcCCCC--EEEEeeCCCCEEEEECCCCeEEEeecCC----------------------------
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVRTGKCLKTLPAH----------------------------  152 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~----------------------------  152 (247)
                       +..+..|..+|..+.|-+...  .|+||+.|.+|+.||+|...++..+...                            
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence             456788999999999977555  8999999999999999976554333211                            


Q ss_pred             ---------C----CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeee--eecc--------CCCCCeEEEEECCCCC
Q psy4393         153 ---------S----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLID--------DDNPPVSFVKFSPNGK  209 (247)
Q Consensus       153 ---------~----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~--------~~~~~v~~~~~s~~~~  209 (247)
                               .    -.++|++..++....+.|+-+|.+.+..+..+....  .+.-        ..-..|+.++|+|...
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence                     1    125677777777777888888888887776642211  1111        1124578899999999


Q ss_pred             EEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         210 YILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      .|++++.||++.+||.+....+..+....-+
T Consensus       265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~qp  295 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQP  295 (347)
T ss_pred             eEEEecCCceEEEecchhhhhhhccCcCCCc
Confidence            9999999999999998776666555444333

>KOG0277|consensus

Probab=99.96  E-value=2e-27  Score=171.40  Aligned_cols=205  Identities=28%  Similarity=0.475  Sum_probs=173.4

Q ss_pred             EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEEC
Q psy4393          21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..++.|...|.++.|++ .++.+++++.|++|++|+...++.+.++.+|...|....|+| ..+.+++++.|+.+++||+
T Consensus        98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv  177 (311)
T KOG0277|consen   98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV  177 (311)
T ss_pred             hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence            34568999999999998 455678889999999999998999999999999999999999 5788999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECCCC-CEEEEecCCC
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDG  175 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  175 (247)
                      +.......+..|...+.++.|+. +.+.++||+.|+.|+.||++.- .++.++.+|.-.|+.++|+|.. .+|++++.|=
T Consensus       178 r~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  178 RSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             cCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence            86544445888988999999987 5678999999999999999864 4677888999999999999965 5789999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCC-CCEEEEEEcCCeEEEEEC
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDS  225 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~  225 (247)
                      ++++||...+.........|..-+..+.|++. +.++|.++-|+.+.||+.
T Consensus       258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999988655444444455555667888874 568999999999999984

>KOG0646|consensus

Probab=99.95  E-value=8.2e-27  Score=180.71  Aligned_cols=208  Identities=17%  Similarity=0.293  Sum_probs=177.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC------
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS------  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------  100 (247)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|...|+++.|+-||.+|++|++||.|.+|++.+      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            57899999999999999998999999999999999999999999999999999999999999999999998642      


Q ss_pred             ---ceEEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         101 ---GKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       101 ---~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                         -++.+.+..|.-.|..+...+.  ...+++++.|..+++||+..+..+..+.- +.++.+++.+|-++.+++|+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcc
Confidence               2456777888888988877664  46899999999999999999988777654 56899999999999999999999


Q ss_pred             eEEEEeCCCce----------------eeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         176 LCRIWDTASGQ----------------CLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       176 ~i~v~d~~~~~----------------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      .|.+.++....                ....+..+. ...|++++.+-||.+|++|+.||.|+|||....+.+.++.
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            99988765432                111122222 2589999999999999999999999999998887776655

>KOG0641|consensus

Probab=99.95  E-value=3.8e-25  Score=157.65  Aligned_cols=217  Identities=27%  Similarity=0.477  Sum_probs=173.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE-----EEEEecccCCeEEEEECCC----CCEEEEEc-
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSD----SRLLVSGS-   88 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-   88 (247)
                      +....+-|.+.|.|.+|+|+|+++++|+.|..|++.......+     ...+.-|.+.|.+++|-.+    +..+++++ 
T Consensus        81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            3333445789999999999999999999999999976532221     2346668889999999643    34455543 


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC--C-----CCCeEEEEE
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--H-----SDPVSAVHF  161 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~-----~~~i~~~~~  161 (247)
                      .|..|++-|..+++..+.+.+|.+.|..+ ++-++-.+++|+.|.+|++||++-..++..+..  |     ...|.+++.
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            46677777888888888999999988764 556688999999999999999998887776532  1     246899999


Q ss_pred             CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc----ceEEEEccC
Q psy4393         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV----TPAIICSTP  237 (247)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~  237 (247)
                      .|.|++|++|..|....+||++.++.++.+. ++...|.++.|+|...|+++++.|..|++-|++..    .|+.+.+.+
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh  318 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH  318 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence            9999999999999999999999999887764 56678999999999999999999999999998642    355444443

>KOG0293|consensus

Probab=99.95  E-value=1.2e-26  Score=177.69  Aligned_cols=220  Identities=20%  Similarity=0.423  Sum_probs=180.3

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      ..+.+++.+|..+|.-+.||||.++|++|+.+..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+..
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM  338 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence            55678889999999999999999999999999999999999998776664 34677999999999999999999999999


Q ss_pred             EECCCceEEEEEecC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          96 WELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      ||+.. ......++- ...|.+++..+||+.+++.+.|..+++++..+......+. ...++++..++.+++++++--.+
T Consensus       339 wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  339 WDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             ecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEccc
Confidence            99864 333333322 3568999999999999999999999999987655443333 35689999999999999999999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCC--eEEEEEC-CCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPP--VSFVKFS-PNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ..+++||+...+.+..+..+..+.  |.+ +|. .+..++++|++|+.|+||+...++++.++.+++.
T Consensus       417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             CeeEEeecchhhHHHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence            999999999877666655443322  332 343 4558999999999999999999999999887764

>KOG0293|consensus

Probab=99.95  E-value=1.2e-26  Score=177.62  Aligned_cols=222  Identities=25%  Similarity=0.404  Sum_probs=180.8

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC---eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ..+..|+..|--+.||++|++||+++.|.+..+|.+...   +...++.+|..+|..+.|+||.+++++++.+..+.+||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            345689999999999999999999999999999987543   34567789999999999999999999999999999999


Q ss_pred             CCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECCCCCEEEEecCCC
Q psy4393          98 LSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +.++.....+.. +...+.+++|.|||..+++|+.|+.+..||+.. ..+...+... ..|.++++++||+++++.+.|.
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK  376 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence            999987765543 356788999999999999999999999999964 3344443322 3589999999999999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcccceee
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYR  245 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  245 (247)
                      .+++|+..+.....  ......+|+.+..|.|++++++.-.+..+++||......+.-|.++---+++++
T Consensus       377 ~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  377 KIRLYNREARVDRG--LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             ceeeechhhhhhhc--cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence            99999987654332  223456899999999999999999999999999986554444555444444443

>KOG0640|consensus

Probab=99.95  E-value=1.4e-26  Score=171.72  Aligned_cols=178  Identities=22%  Similarity=0.484  Sum_probs=151.8

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE--EEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      +.++.+..++..|..+|+++.|+|....|++++.|++|+++|.......+  +......+|.++.|+|.|.+++.|.+-.
T Consensus       159 qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp  238 (430)
T KOG0640|consen  159 QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP  238 (430)
T ss_pred             ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence            34456778999999999999999999999999999999999986543222  2233456799999999999999999999


Q ss_pred             eEEEEECCCceEEEEE---ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCC-CeEEEEECCCCC
Q psy4393          92 TLKIWELSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSD-PVSAVHFNRDGS  166 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~-~i~~~~~~~~~~  166 (247)
                      .+++||+++.++...-   ..|.+.|.++.+++.+++.++++.||.|++||--+++++..+. +|.+ .|.+..|..+++
T Consensus       239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence            9999999998765432   3567889999999999999999999999999999988887764 5544 688899999999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeee
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      ++++.+.|..+++|.+.+++.+..+
T Consensus       319 yiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEeecCCcceeeeeeecCCceEEEE
Confidence            9999999999999999998776655

>KOG0313|consensus

Probab=99.95  E-value=6.3e-26  Score=171.86  Aligned_cols=198  Identities=33%  Similarity=0.579  Sum_probs=168.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-------------------------CeEEEEEecccCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------------------------GKFEKTISGHKLGISDVAWSS   79 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~   79 (247)
                      ||.++|-++.-.++|.++++|+.|..+.+|+...                         +..+..+.+|..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            8999999999999999999999999999998211                         012345678999999999998


Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---EEEeecCCCCCe
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPV  156 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i  156 (247)
                       ...+++++.|.+|+.||+.++.....+... ..+.++..+|...++++|+.|..+++||.|++.   ....+..|.+.|
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV  348 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV  348 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence             667999999999999999999888777754 458899999999999999999999999999764   345678999999


Q ss_pred             EEEEECCCCC-EEEEecCCCeEEEEeCCCce-eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         157 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       157 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      .++.|+|... .|++++.|+++++||+++.+ ++..+. .+...|.++.|+. +.++++|+.|++|+|+...
T Consensus       349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            9999999765 67899999999999999877 555544 4566788999975 5689999999999999754

>KOG0313|consensus

Probab=99.95  E-value=8e-26  Score=171.31  Aligned_cols=218  Identities=29%  Similarity=0.481  Sum_probs=178.0

Q ss_pred             eEEEEEecCCCCeEEEEECCCCC---EEEEEeCCCeEEEEecCCCeEE----EEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ...+++.+|.++|.+++|.-...   .+++++.|.++++|-...+...    ....+|...|.+++..++|..+++|+.|
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D  214 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD  214 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence            35567779999999988854333   5899999999999987665432    2335899999999999999999999999


Q ss_pred             CeEEEEECCC-------------------------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE
Q psy4393          91 KTLKIWELSS-------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC  145 (247)
Q Consensus        91 ~~i~v~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  145 (247)
                      ..+.+|+..+                         +.++-.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~  293 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL  293 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence            9999999321                         123445678999999999998 67899999999999999999998


Q ss_pred             EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce--eeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEE
Q psy4393         146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKL  222 (247)
Q Consensus       146 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v  222 (247)
                      +..+.. ..+..++.++|...+|++|+.|..+++||.+++.  ....-+..|..-|..+.|+|... +|++++.||++++
T Consensus       294 ~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  294 KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             eeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence            877765 4578999999999999999999999999998764  33333445566789999999765 5678899999999


Q ss_pred             EECCCcc-eEEEEccC
Q psy4393         223 WDSKVVT-PAIICSTP  237 (247)
Q Consensus       223 wd~~~~~-~~~~~~~~  237 (247)
                      ||.|... |+-.+.++
T Consensus       373 WDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  373 WDVRSTKAPLYDIAGH  388 (423)
T ss_pred             EEeccCCCcceeeccC
Confidence            9999876 77766664

>KOG0772|consensus

Probab=99.95  E-value=1.5e-26  Score=181.45  Aligned_cols=218  Identities=26%  Similarity=0.466  Sum_probs=168.1

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE----EEEE-ecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTI-SGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      .+.....+..|+..|+++++.|.|.++++|+.|-.|++||......    -..+ ......|.++.|++.|..|++.+..
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            3556677888999999999999999999999999999999754221    1122 2334569999999999999999999


Q ss_pred             CeEEEEECCCceEEE------------EEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE-EEeec-----C
Q psy4393          91 KTLKIWELSSGKCLK------------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC-LKTLP-----A  151 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~-~~~~~-----~  151 (247)
                      ...+++|-.....+.            ..++|...+.|-+|+|.. +.+++++.||++++||+...+. ..+++     .
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            999999965433322            235778889999999965 5788999999999999976542 22332     2


Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee--eeeeccCCC--CCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       152 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..-+++..+|+|+++++|+|+.||.|.+|+..+...  ...+...|.  ..|+++.||+||++|++=+.|+++++||+++
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            234678889999999999999999999999865332  222223333  4799999999999999999999999999987


Q ss_pred             c-ceEEE
Q psy4393         228 V-TPAII  233 (247)
Q Consensus       228 ~-~~~~~  233 (247)
                      . +|+.+
T Consensus       396 ~kkpL~~  402 (641)
T KOG0772|consen  396 FKKPLNV  402 (641)
T ss_pred             cccchhh
Confidence            5 34433

>KOG0269|consensus

Probab=99.95  E-value=2.4e-27  Score=193.61  Aligned_cols=212  Identities=24%  Similarity=0.462  Sum_probs=174.8

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCeEEEEecCC---CeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCCce
Q psy4393          28 KAVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        28 ~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      ..+..++|.. +.++||+++.+|.|.+||+..   .+....+..|...++++.|++. -.+|++|++||.|++||++..+
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence            3455688875 567899999999999999865   3444567789999999999984 4678999999999999999888


Q ss_pred             EEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         103 CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ....+.+....|+.+.|+| .+..++++...|.+++||+|... +...+.+|.++|.|+.|+|++.+||+|+.|+.|+||
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            8778888888999999998 56789999999999999999754 566788999999999999999999999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEE-EEEE--cCCeEEEEECCCc-ceEEEEccCCc
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAAT--LDNTLKLWDSKVV-TPAIICSTPLN  239 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~--~dg~i~vwd~~~~-~~~~~~~~~~~  239 (247)
                      |..+.+...........++..++|-|..++. ++++  .|-.|+|||++-. -|..++..+.+
T Consensus       248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            9987654443333456789999999987754 4544  4779999999865 47766666554

>KOG0305|consensus

Probab=99.95  E-value=6.3e-26  Score=181.96  Aligned_cols=210  Identities=26%  Similarity=0.429  Sum_probs=183.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ...|+++.|+++|.+|++|..+|.|.|||..+.+....+.+ |...|-+++|.  +..+.+|+.++.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            78999999999999999999999999999988888888888 88899999998  6778999999999999998876444


Q ss_pred             E-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC-CCEEEEec--CCCeEEEEe
Q psy4393         106 T-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSS--YDGLCRIWD  181 (247)
Q Consensus       106 ~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~dg~i~v~d  181 (247)
                      . +.+|...|..+.|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+|- ..+||+|+  .|+.|++||
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            3 7889999999999999999999999999999999888888899999999999999994 45788765  689999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEE--EcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--TLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ..+++.+...  .....|..+.|++..+.|+++  ..++.|.||+..+.++...+..|..-
T Consensus       375 ~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R  433 (484)
T KOG0305|consen  375 TNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR  433 (484)
T ss_pred             cCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence            9999877655  335689999999998777764  46789999999988888777776553

>KOG0289|consensus

Probab=99.95  E-value=6.1e-26  Score=174.66  Aligned_cols=210  Identities=20%  Similarity=0.387  Sum_probs=186.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ...++++...|....+++|+.|..+.++|...++.+..+.+|...|+++.++|+...+++++.|..|++|..........
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            46788888888878899999999999999999999999999999999999999999999999999999999988777778


Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ...|..+|..+..+|.|.++++++.|+.+.+.|++++..+......  .-.+++.+|+|||.+|.+|..||.+++||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            8899999999999999999999999999999999999987766543  23579999999999999999999999999999


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +.....+ ..|.++|..++|+.+|-||++++.|+.|++||+|-...+.+++.+
T Consensus       379 ~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  379 QTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             ccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence            8866554 458899999999999999999999999999999866555554443

>KOG0281|consensus

Probab=99.95  E-value=1.1e-27  Score=179.94  Aligned_cols=203  Identities=26%  Similarity=0.500  Sum_probs=174.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ...+|.|+.+.  .+.+++|..|.+|++||..+..+...+.+|.+.|.++.+.  .+.|++|+.|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            35779998884  5678999999999999998888888999999999999886  4689999999999999999999999


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE---EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      .+..|...|..+.|+.  .++++++.|.++.+||+.+...+   ..+.+|...|..+.|+  .+++++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            9999999999999984  69999999999999999876532   3467888999999885  469999999999999999


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      .+.+.++++. .+...|.|+.+  .++++++|+.|++|++||...+..+.+++++-+
T Consensus       348 st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe  401 (499)
T KOG0281|consen  348 STCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  401 (499)
T ss_pred             cceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH
Confidence            9999887654 45566777765  478999999999999999988877776666544

>KOG0306|consensus

Probab=99.95  E-value=1.7e-25  Score=182.40  Aligned_cols=229  Identities=24%  Similarity=0.391  Sum_probs=193.9

Q ss_pred             CCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCe
Q psy4393          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (247)
Q Consensus        13 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   92 (247)
                      |++.-....++.+|...|.+++++.+...+++| ..+.+++|+..+.++..++...  .+.+..|.|.++++++|..+|.
T Consensus       359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGE  435 (888)
T ss_pred             ccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCc
Confidence            566666778888999999999999988777765 5678999999999988888643  6888899999999999999999


Q ss_pred             EEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-----CeEEEeec-------CCCCCeEEEE
Q psy4393          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-----GKCLKTLP-------AHSDPVSAVH  160 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~-------~~~~~i~~~~  160 (247)
                      +.+||+.....+..+++|.+.++.++..|++..+++|+.|.+|++||..-     +...+.+.       .-+..|.|+.
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            99999999888888899999999999999999999999999999998741     11111111       1245789999


Q ss_pred             ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ++|||++|+++-.|.++++|-+.+-+..-.+ .+|.-||.++..+||++++++|+.|.+|+||-.+-+++...+-++-+.
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            9999999999999999999999887755444 467889999999999999999999999999999999888887776553


Q ss_pred             ---cceee
Q psy4393         241 ---NYFYR  245 (247)
Q Consensus       241 ---~~~~~  245 (247)
                         .+|+|
T Consensus       595 vm~V~F~P  602 (888)
T KOG0306|consen  595 VMSVQFLP  602 (888)
T ss_pred             eeEEEEcc
Confidence               55655

>KOG0300|consensus

Probab=99.95  E-value=3.1e-26  Score=170.49  Aligned_cols=226  Identities=26%  Similarity=0.453  Sum_probs=195.0

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..+...+.||..+|..++-......+.+++.|.+-+||.++.+.++..+.+|.+.|+++.|++.+.++++++.|++-+||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            34445567999999999988877888999999999999999999999999999999999999999999999999999999


Q ss_pred             EC------CC------------------------------c----eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEE
Q psy4393          97 EL------SS------------------------------G----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  136 (247)
Q Consensus        97 d~------~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  136 (247)
                      ..      ..                              +    .++..+++|.+.|.++.|-..++.+++++.|++-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            61      10                              0    12345678888999999999999999999999999


Q ss_pred             EEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc
Q psy4393         137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       137 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  216 (247)
                      +||+++++.+..+.+|....+..+-+|..+++++.+.|.+.++||.+..-.-...+.++...|+...|.-+. .+++|+.
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD  376 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD  376 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence            999999999999999999999889999999999999999999999985433344466777889999998875 5889999


Q ss_pred             CCeEEEEECCCc-ceEEEEccCCcccce
Q psy4393         217 DNTLKLWDSKVV-TPAIICSTPLNLNYF  243 (247)
Q Consensus       217 dg~i~vwd~~~~-~~~~~~~~~~~~~~~  243 (247)
                      |.+|+|||++.+ .|+-++++.+..|-+
T Consensus       377 DrTvKvWdLrNMRsplATIRtdS~~NRv  404 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIRTDSPANRV  404 (481)
T ss_pred             CceEEEeeeccccCcceeeecCCcccee
Confidence            999999999877 688888887776643

>KOG0288|consensus

Probab=99.95  E-value=2.2e-26  Score=175.97  Aligned_cols=218  Identities=26%  Similarity=0.447  Sum_probs=183.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..-++.+..++|+++.|.+++.++++++.|+.+++|+....+....+.+|...|+++.|......+++++.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            34456677889999999999999999999999999999999999999999999999999887777999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      ....+.+++-. .+.+..+..+  ...+++|-.|+.|++||.++..+......+. .|+++..++++..+.+++.|..+.
T Consensus       291 ~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  291 QKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             hhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCcee
Confidence            98777665542 2334444444  5678899999999999999999888888764 899999999999999999999999


Q ss_pred             EEeCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         179 IWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ++|+++.+....+...   ....++.+.|||++.|+++|+.||.|+||+..+++...+...+.+.
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            9999998766655322   2344778899999999999999999999999998876666555543

>KOG0264|consensus

Probab=99.95  E-value=2.1e-25  Score=172.37  Aligned_cols=204  Identities=23%  Similarity=0.392  Sum_probs=165.5

Q ss_pred             ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCe----------EEEEEecccCCeEEEEECCC-CCEEEEEcCCC
Q psy4393          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK----------FEKTISGHKLGISDVAWSSD-SRLLVSGSDDK   91 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~   91 (247)
                      -.|.+.|..+++.|... .+|+.+..+.+.|||.....          ....+.+|...-.++.|++. .-.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            36999999999999766 55667888999999975321          12267788776778999985 44689999999


Q ss_pred             eEEEEECCCce-------EEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECC--CCeEEEeecCCCCCeEEEEE
Q psy4393          92 TLKIWELSSGK-------CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHF  161 (247)
Q Consensus        92 ~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~  161 (247)
                      .|++||+....       ....+.+|...|..++|++. ..++++++.|+.+.|||+|  +.++.....+|.+.+.|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999987532       33467789999999999984 4678899999999999999  45556677899999999999


Q ss_pred             CCC-CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCC
Q psy4393         162 NRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKV  227 (247)
Q Consensus       162 ~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  227 (247)
                      +|- +..||+|+.|+.|.+||+|+.......+..+...|..+.|+|+.. .||+++.|+++.|||+..
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            995 557889999999999999986654444566778899999999864 677888999999999864

>KOG0310|consensus

Probab=99.94  E-value=6.9e-25  Score=170.94  Aligned_cols=199  Identities=25%  Similarity=0.402  Sum_probs=169.7

Q ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCC
Q psy4393          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~  100 (247)
                      +.+|+.+|..+.|+|+++ .+++|+.|+.+++||+.+...+..+.+|...|.+.+|+|... .+++|+-||.|++||.+.
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            357999999999999655 667788889999999998887668999999999999999655 788999999999999987


Q ss_pred             c-eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         101 G-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       101 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      . ..+..+ .|..+|..+.+-|.|.++++++. ..+++||+.+| +.+..+..|...|+|+++..++..|++++.|+.++
T Consensus       186 ~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  186 LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence            6 444444 47788999999999999999864 57999999855 45555556999999999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +||..+.+.+..+.  -.++|..++.+|+++.++.|..+|.+.+=+.
T Consensus       264 Vfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  264 VFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             EEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeeehh
Confidence            99988888777663  3468999999999999999999998887743

>KOG0308|consensus

Probab=99.94  E-value=2.8e-26  Score=184.31  Aligned_cols=213  Identities=24%  Similarity=0.533  Sum_probs=179.6

Q ss_pred             CCCCeE---EEEEC-CCCCEEEEEeCCCeEEEEecCCCe------EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          26 HTKAVS---SVKFS-PNGEWLASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        26 h~~~v~---~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      |...|.   .+..+ |.+++|++|++||.|++|+.....      ....+..|..-|.++..+.+++.+++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444555   45554 466789999999999999875322      34567778888999999999999999999999999


Q ss_pred             EECCCc--eEEEEEecCCccEEEEEE-cCCCCEEEEeeCCCCEEEEECCCCeE--E--------Eeec-CCCCCeEEEEE
Q psy4393          96 WELSSG--KCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVRTGKC--L--------KTLP-AHSDPVSAVHF  161 (247)
Q Consensus        96 ~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~--~--------~~~~-~~~~~i~~~~~  161 (247)
                      |+...+  -+...++.|.+.|.|++. .++..++|+|+-|+.|.+||+.++..  +        ..+. ++..++.+++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            999876  467788899999999999 78889999999999999999997732  1        1222 56678999999


Q ss_pred             CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++.|..+++|+.++.+++||.++.+.+..+. +|...|..+..++||..+++++.||+|++||+....++-++..|.+
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            9999999999999999999999988776665 7778899999999999999999999999999999998888887765

>KOG0299|consensus

Probab=99.94  E-value=2.4e-25  Score=172.39  Aligned_cols=202  Identities=21%  Similarity=0.395  Sum_probs=177.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      +|.+.+.+++.++||++|++|+.|..|.||+..+.+....+.+|...|.+++|......+++++.|+.+++|++.....+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            89999999999999999999999999999999999999999999999999999988888999999999999999988888


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      .++.+|.+.|..+....-+..+..|+.|+++++|++... ....+.++.+.+.|++|- +..++++|+.+|.|.+|++..
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecc
Confidence            889999999999988887787888889999999999543 334566778889999986 456799999999999999998


Q ss_pred             ceeeeeeccCCC-----------CCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         185 GQCLKTLIDDDN-----------PPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       185 ~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .+++......|.           .-|+.++..|...++++|+.+|.|++|-..++
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            887766533221           14778999999999999999999999988776

>KOG0274|consensus

Probab=99.94  E-value=7.9e-25  Score=181.08  Aligned_cols=206  Identities=34%  Similarity=0.660  Sum_probs=184.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      |...+.+..|.  +.++++++.+..+++|+..++..... +.+|.+.|.++.+..-+..+++|+.|.++++||..++++.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            45667788887  56788899999999999999888877 9999999999999887889999999999999999999999


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ..+.+|.+.+.++...+  ..+++|+.|..|++|+++++..+..+.+|.++|.++..+  +.++++|+.|+.|.+||+.+
T Consensus       285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            99999999998876654  578889999999999999999999999999999999987  78999999999999999999


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc-ceEEEEccCCc
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV-TPAIICSTPLN  239 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~  239 (247)
                      +++++.+.. |...|.++.+.+. ..++.|+.|+.|++||.+++ +++-++..+.+
T Consensus       361 ~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  361 GKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS  414 (537)
T ss_pred             ceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence            999988765 6778998887765 89999999999999999999 88888777766

>KOG1407|consensus

Probab=99.94  E-value=1.1e-24  Score=157.97  Aligned_cols=195  Identities=26%  Similarity=0.494  Sum_probs=162.3

Q ss_pred             EEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      .....+|++.|-.++|+| ....+++++.|..|++||...+++...+......+ -+.|+|+|+++++++.|..|...|.
T Consensus        57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDA  135 (313)
T ss_pred             hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEe
Confidence            344568999999999998 45688999999999999999988887776544444 4679999999999988887777665


Q ss_pred             CCc-----------------------------------------eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEE
Q psy4393          99 SSG-----------------------------------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  137 (247)
Q Consensus        99 ~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v  137 (247)
                      ++.                                         +++..+++|.....|+.|+|+|+++|+|+.|..+.+
T Consensus       136 r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL  215 (313)
T KOG1407|consen  136 RTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL  215 (313)
T ss_pred             cccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeec
Confidence            432                                         223345567777889999999999999999999999


Q ss_pred             EECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                      ||+..--+.+.+..++-||+.+.|+.||++||++++|-.|-|-++.+|..+..+  +..++...++|+|...+||.+..|
T Consensus       216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEecC
Confidence            999888888889889999999999999999999999999999999999766554  455677889999999999987754

>KOG0275|consensus

Probab=99.94  E-value=7e-27  Score=174.40  Aligned_cols=198  Identities=31%  Similarity=0.497  Sum_probs=172.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      |..+|.|+.|+.|.+.||+|+.||.|++|.+.++.+...+. .|..+|+++.|+.|+..+++++.|.++++.-++.|+++
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL  341 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence            57889999999999999999999999999999999988886 78889999999999999999999999999999999999


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--------------------------------
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--------------------------------  152 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------------------------  152 (247)
                      +.+++|.+.|....|.++|+.+++++.||++++|+..+.+++..++..                                
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            999999999999999999999999999999999998876543332210                                


Q ss_pred             ---------------CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         153 ---------------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       153 ---------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                                     .+..-+.+.+|.|.++++.++|+.++-|...+|+....+..++ ..+..++-+|..+.|++-+.|
T Consensus       422 ~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  422 MQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             ccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-ccccccccCcccchhhhhccc
Confidence                           1123345678999999999999999999999988776665444 445678889999999999999


Q ss_pred             CeEEEEE
Q psy4393         218 NTLKLWD  224 (247)
Q Consensus       218 g~i~vwd  224 (247)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999994

>KOG0268|consensus

Probab=99.94  E-value=3.7e-26  Score=172.31  Aligned_cols=211  Identities=27%  Similarity=0.416  Sum_probs=168.2

Q ss_pred             EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          21 FTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..+.+|..+|.+++=+|.. ..+++|+.||.|++||+...++...+..|.+.|..|++..  ..++++++|.+|+.|-+.
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            3567999999999999976 6789999999999999999999999999999999999876  567788888887777632


Q ss_pred             --------------------------------------CceEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEEC
Q psy4393         100 --------------------------------------SGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDV  140 (247)
Q Consensus       100 --------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~  140 (247)
                                                            ...++..+....+.+.++.|+|.. .+|++++.|+.|.+||+
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~  217 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL  217 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence                                                  112233344445567788888855 45677779999999999


Q ss_pred             CCCeEEEe------------------------------------------ecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         141 RTGKCLKT------------------------------------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       141 ~~~~~~~~------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      +.+.+++.                                          ...|.+.|.+++|+|.|+-+++|+.|.+|+
T Consensus       218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence            87655422                                          234555788999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ||....+.....+.......|.++.||.|.+++++|+.|+.|++|-.+....+.+
T Consensus       298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence            9999877655444444556789999999999999999999999999876654433

>KOG1273|consensus

Probab=99.94  E-value=6.3e-25  Score=163.12  Aligned_cols=208  Identities=22%  Similarity=0.410  Sum_probs=168.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      -.|+.|++.|.+||.|+.||.|.|||..+......+.+|..+|.+++|+++|+.|++++.|..|.+||+..|.+++.++-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            78999999999999999999999999999888888999999999999999999999999999999999998876655431


Q ss_pred             CCccEE-----------------------------------------------EEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393         110 HSNYVF-----------------------------------------------CCNFNPQSNLIVSGSFDESVRIWDVRT  142 (247)
Q Consensus       110 ~~~~v~-----------------------------------------------~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (247)
                       .++|+                                               +..|++.|+++++|...|.+.++|..+
T Consensus       106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence             11111                                               112555688999999999999999999


Q ss_pred             CeEEEeecCCC-CCeEEEEECCCCCEEEEecCCCeEEEEeCCCc-------ee--eeeecc-CCCCCeEEEEECCCCCEE
Q psy4393         143 GKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-------QC--LKTLID-DDNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       143 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~--~~~~~~-~~~~~v~~~~~s~~~~~l  211 (247)
                      .+++..++... ..|..+.++..|+.|+.-+.|..|+.|++..-       +.  .+.+.. -+..+..++.|+.+|.|+
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv  264 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV  264 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence            98888776554 67889999999999999999999999987631       11  111111 123456789999999999


Q ss_pred             EEEEc-CCeEEEEECCCcceEEEEccCC
Q psy4393         212 LAATL-DNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       212 ~~~~~-dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++++. ...++||+...+..+.++.++-
T Consensus       265 ~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  265 CAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             EeccccceeEEEEecCCcceeeeecCCc
Confidence            98875 4589999999998888776543

>KOG4283|consensus

Probab=99.94  E-value=6.3e-25  Score=161.86  Aligned_cols=204  Identities=25%  Similarity=0.493  Sum_probs=166.6

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCe----------EEEEE-----ecccCCeEEEEECC-CCCEEEEE
Q psy4393          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK----------FEKTI-----SGHKLGISDVAWSS-DSRLLVSG   87 (247)
Q Consensus        25 ~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~----------~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~   87 (247)
                      .|.+.|.++...+ .|+++++|+.||.+.+||+++..          .+..+     .+|...|.++.|.| |...+.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            5899999999988 68999999999999999986432          11111     24677899999999 66678888


Q ss_pred             cCCCeEEEEECCCceEEEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC
Q psy4393          88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  164 (247)
                      +-|.++++||..+.+..-.++- .+.|..-+++|   ...++|+|..+-.|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            8999999999999887766663 45677777877   3468899999999999999999999999999999999999998


Q ss_pred             CC-EEEEecCCCeEEEEeCCCc-eeeeee-------------ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         165 GS-LIVSSSYDGLCRIWDTASG-QCLKTL-------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       165 ~~-~l~~~~~dg~i~v~d~~~~-~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      .. .|++|+.||.+++||++.. .+...+             ...+.+.+..++|+.++.++++++.|.++++|+...+.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            77 4688999999999999864 222211             12244678899999999999999999999999986653

>KOG0267|consensus

Probab=99.94  E-value=9e-27  Score=189.05  Aligned_cols=196  Identities=30%  Similarity=0.552  Sum_probs=179.9

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .+.+|..+|-++.|+++..+|++|..+|+|++||++..+....+.+|...+..+.|+|-+.+.+.++.|+.+.+||.+..
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            47799999999999999999999999999999999999988999999999999999999999999999999999999988


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      .+.+.+++|...+..+.|+|+|.+++.|++|..+++||+..|+.+..|..|.+.+..+.|+|..-+++.|+.|+.+++||
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence            88899999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                      +++-+.+... ......|.+.+|+|+++.+++|.++.
T Consensus       225 letfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  225 LETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cceeEEeecc-CCccCCceeeeecCCceeeecCchhh
Confidence            9876655433 23356789999999999988887654

>KOG1332|consensus

Probab=99.94  E-value=6.2e-25  Score=157.78  Aligned_cols=210  Identities=30%  Similarity=0.432  Sum_probs=171.4

Q ss_pred             eEEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCeEEE--EEecccCCeEEEEECCC--CCEEEEEcCCC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   91 (247)
                      .+..+|.||.++|..++|..  -|.+||+|+.||.|.||.-.+++..+  ....|...|++++|.|.  |-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            56678999999999999976  89999999999999999987775433  35678999999999985  56789999999


Q ss_pred             eEEEEECCCc---eEEEEEecCCccEEEEEEcCC---C-----------CEEEEeeCCCCEEEEECCCCeE--EEeecCC
Q psy4393          92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQ---S-----------NLIVSGSFDESVRIWDVRTGKC--LKTLPAH  152 (247)
Q Consensus        92 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~  152 (247)
                      .|.+.+.+..   ...+....|.-.+.+++|.|.   |           ..|++|+.|..|++|+..+++-  -..+..|
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence            9999988764   123345678888999999885   3           4699999999999999887642  2347899


Q ss_pred             CCCeEEEEECCCC----CEEEEecCCCeEEEEeCCC--ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         153 SDPVSAVHFNRDG----SLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       153 ~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      .+.|+.++|.|.-    ..+++++.||.+.||..+.  .+...+++......+..+.||+.|..|+.++.|+.|.+|--+
T Consensus       207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999999999964    4799999999999997652  233344454555678899999999999999999999999654


Q ss_pred             C
Q psy4393         227 V  227 (247)
Q Consensus       227 ~  227 (247)
                      .
T Consensus       287 ~  287 (299)
T KOG1332|consen  287 V  287 (299)
T ss_pred             C
Confidence            4

>KOG0283|consensus

Probab=99.94  E-value=1.3e-24  Score=179.26  Aligned_cols=204  Identities=24%  Similarity=0.411  Sum_probs=165.0

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..+.||.+.|..+.|+.+ .+|++++.|.+|++|+.....++..+. |..-|+|++|+| |.+++++|+-||.++||++.
T Consensus       363 ~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             hhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            456799999999999975 467889999999999998888877765 778899999999 78899999999999999998


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec--------CCCCCeEEEEECCCC-CEEEE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--------AHSDPVSAVHFNRDG-SLIVS  170 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~  170 (247)
                      ..+.+. ...-...|.++++.|+|+..+.|+.+|.+++|+....+....+.        .....|+.+.+.|.. ..+++
T Consensus       441 d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV  519 (712)
T KOG0283|consen  441 DKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV  519 (712)
T ss_pred             cCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence            776554 33344779999999999999999999999999998766544331        112379999998744 35777


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+.|..|+|||.++...+..+..... ..-....|+.||++|++++.|..|+||+.+.
T Consensus       520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            88899999999987766655543222 2224578999999999999999999999743

>KOG1274|consensus

Probab=99.94  E-value=5.2e-24  Score=177.13  Aligned_cols=203  Identities=27%  Similarity=0.506  Sum_probs=171.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-----------eEEEE-----------------------------
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------KFEKT-----------------------------   64 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~-----------~~~~~-----------------------------   64 (247)
                      .|+.+.+.++|.|+|+.|.+|+.||.|++|+....           .....                             
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            78999999999999999999999999999974321           11100                             


Q ss_pred             -EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC
Q psy4393          65 -ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (247)
Q Consensus        65 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (247)
                       +.....+++.++++.+|++++.|+.|-.|++.++.+....+.+++|..+|.++.++|.++++|+.+.||.|++||+.++
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence             1112346788999999999999999999999999999888999999999999999999999999999999999999988


Q ss_pred             eEEEeecC-------C-CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEE
Q psy4393         144 KCLKTLPA-------H-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       144 ~~~~~~~~-------~-~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~  214 (247)
                      .....+..       . ...+..++|+|++..+++.+.|+.|.+|+..+++....+..... ..+..+.|+|+|+|||++
T Consensus       171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence            76554431       1 34567789999988888889999999999999988877766543 448999999999999999


Q ss_pred             EcCCeEEEEECCC
Q psy4393         215 TLDNTLKLWDSKV  227 (247)
Q Consensus       215 ~~dg~i~vwd~~~  227 (247)
                      +.||.|.|||.++
T Consensus       251 ~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  251 TLDGQILVWNVDT  263 (933)
T ss_pred             ccCCcEEEEeccc
Confidence            9999999999984

>KOG0973|consensus

Probab=99.94  E-value=2.1e-24  Score=182.21  Aligned_cols=213  Identities=31%  Similarity=0.514  Sum_probs=175.2

Q ss_pred             EecC-CCCeEEEEECCCCCEEEEEe--CCCeEEEEecCC------------CeEEEEEecccCCeEEEEECCCCCEEEEE
Q psy4393          23 LAGH-TKAVSSVKFSPNGEWLASSS--ADKLIKIWGAYD------------GKFEKTISGHKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        23 ~~~h-~~~v~~~~~s~~~~~l~~~~--~dg~v~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (247)
                      +-.| ...|.++..+|+|..+++|+  .|+.+++|+...            .+.+.....|.+.|+++.|+|||+++|+|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            3344 45689999999999999999  899999998641            23345567789999999999999999999


Q ss_pred             cCCCeEEEEECCC------------------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393          88 SDDKTLKIWELSS------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (247)
Q Consensus        88 ~~d~~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (247)
                      ++|+.|.+|....                  -+....+.+|...|..++|+|++.++++++.|+.|.+|+.++...++.+
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            9999999999762                  0245678899999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee--------------------------------------
Q psy4393         150 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--------------------------------------  191 (247)
Q Consensus       150 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------------------------------------  191 (247)
                      ..|.+.|..+.|+|-|++||+-+.|+++++|++.+....+..                                      
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI  247 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence            999999999999999999999999999999996553221111                                      


Q ss_pred             -------------ccCCCCCeEEEEECCC-----CC------------EEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         192 -------------IDDDNPPVSFVKFSPN-----GK------------YILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       192 -------------~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                                   +.+|..++.++.|+|.     .+            .+|+|+.|+.|.||......|++++.
T Consensus       248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~  321 (942)
T KOG0973|consen  248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH  321 (942)
T ss_pred             EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence                         1234557888888872     11            56778889999999888888877643

>KOG0278|consensus

Probab=99.93  E-value=1.2e-25  Score=162.15  Aligned_cols=216  Identities=26%  Similarity=0.462  Sum_probs=189.3

Q ss_pred             EEecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          22 TLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      +..+|+++|..++|+|   +|-+|++++.||.--+.+-+++.....+.+|.+.|.+.....+..+.++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4459999999999985   7889999999999888888899999999999999999988888888889999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      -++..+..+. |.-.|..++|+.+.+.+++|+.+..+++||++..+ +...+..|.+.|..+-|....+.+++.+.|+.|
T Consensus        89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV  167 (334)
T KOG0278|consen   89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV  167 (334)
T ss_pred             hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence            9999887775 66778999999999999999999999999998654 566788999999999999888889988999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN  241 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  241 (247)
                      ++||.++++..+++...  .+|+++.++++|++|.++. .+.|.+||.+.-.++..+..|-+.+
T Consensus       168 RLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~  228 (334)
T KOG0278|consen  168 RLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVE  228 (334)
T ss_pred             EEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCccccc
Confidence            99999999988887543  5789999999998776654 5799999999988888877766543

>KOG0299|consensus

Probab=99.93  E-value=2.7e-24  Score=166.62  Aligned_cols=216  Identities=23%  Similarity=0.397  Sum_probs=185.4

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE----E------------E--ecccCCeEEEEECCCCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----T------------I--SGHKLGISDVAWSSDSR   82 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~----~------------~--~~~~~~v~~~~~~~~~~   82 (247)
                      ..+..|..+|++++++|+++++++++.+|+|.-|++.+++...    .            .  ..|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            3456799999999999999999999999999999987665320    0            0  24566788999999999


Q ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393          83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        83 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  162 (247)
                      +|++|+.|..|.||+..+.+.++.+++|.+.|.+++|-...+.+++++.|+.+++|++.....+..+-.|...|..+...
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            99999999999999999999999999999999999999988999999999999999999888888888999999999888


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ..++.+.+|+.|+++++|++....  +..+..+...+.+++|-.+ .++++|+.+|.|.+|+.-.+.|+.+.+.+.-
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             cccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccc
Confidence            888888888899999999995432  3334455667888888654 6799999999999999999999988776554

>KOG0308|consensus

Probab=99.93  E-value=9.8e-25  Score=175.47  Aligned_cols=205  Identities=28%  Similarity=0.492  Sum_probs=181.9

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEE-CCCCCEEEEEcCCCeEEEEECC
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      +..|..-|..++...+|+.|++++.|-+|++|+....  -+...+..|...|.+++. .++...+++|+-|+.|.+||++
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence            3457788899999999999999999999999998765  456678889999999999 7788889999999999999999


Q ss_pred             CceE--E--------EEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393         100 SGKC--L--------KTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       100 ~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      ++..  +        ..+. ++...+++++.++.+..+++|+.++.+++||.++.+.+..+++|..-|.++..++||+.+
T Consensus       149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~  228 (735)
T KOG0308|consen  149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL  228 (735)
T ss_pred             CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence            7632  1        1222 667789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      ++++.||.|++||+...+++.++..+..+ +..+..+|+=.++++|+.||.|..=|+++.
T Consensus       229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  229 LSASSDGTIRLWDLGQQRCLATYIVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eecCCCceEEeeeccccceeeeEEeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999887665554 899999999999999999999999998873

>KOG0305|consensus

Probab=99.93  E-value=5.1e-24  Score=171.05  Aligned_cols=205  Identities=24%  Similarity=0.436  Sum_probs=174.1

Q ss_pred             EEec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          22 TLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        22 ~~~~-h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ++.+ |...|-+++|.  +..+.+|+.++.|..+|+...+.... +.+|...|..+.|++|+.++++|+.|+.+.|||..
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            3445 89999999998  66788899999999999976554433 77899999999999999999999999999999998


Q ss_pred             CceEEEEEecCCccEEEEEEcC-CCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE--ecCC
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD  174 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d  174 (247)
                      .......+..|...|.+++|+| ...+||+|+  .|+.|++||..++..+..+.. ...|..+.|++..+-|++  |..+
T Consensus       332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence            7788888999999999999999 567888864  689999999999998887765 467999999998865655  3456


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +.|.||+..+.+....+ ..|...|..++++|||..+++|+.|.++++|+.-...+
T Consensus       411 n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             CcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence            79999999886655554 45667799999999999999999999999999877533

>KOG0288|consensus

Probab=99.93  E-value=1.1e-24  Score=166.79  Aligned_cols=204  Identities=26%  Similarity=0.432  Sum_probs=172.2

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +.+..++.+|+..|+++.|......+++|+.|.+++.||+....+...+.. ...+.++...  ...++++..|+.|++|
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfw  327 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFW  327 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEE
Confidence            456678889999999999988777799999999999999988776665542 3345666655  4567889999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC----CCeEEEEECCCCCEEEEec
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS----DPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~  172 (247)
                      |.+.......+..+. .|.++..++++..+.+.+.|..+.+.|+++.+....+.+..    ...+.+.|+|++.++++|+
T Consensus       328 D~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  328 DIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             eccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence            999988887777654 79999999999999999999999999999988776665432    2477899999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         173 YDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      .||.|+||++.++++...+..... +.|++++|+|.|..|++++.++.+.+|.
T Consensus       407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999999998877765443 3799999999999999999999999993

>KOG0267|consensus

Probab=99.93  E-value=7.2e-26  Score=183.87  Aligned_cols=206  Identities=26%  Similarity=0.541  Sum_probs=186.2

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      ..|...|.++..-..++.+++|+.|..+-+|.+........+.+|..+|.++.|+++..+|++|+.+|+|++||++..+.
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~  104 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI  104 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence            46888888888877888999999999999999877666667899999999999999999999999999999999999999


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      ++.+.+|...+..+.|+|.+.+.+.|+.|..+++||.+...+...+..|...+.++.|+|+|++++.++.|..+++||+.
T Consensus       105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            99999999999999999999999999999999999999777888888899999999999999999999999999999999


Q ss_pred             CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .++....+. .+...+..+.|+|..-+++.|+.|+++++||+++-..
T Consensus       185 agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  185 AGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             ccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence            998777654 3456788899999999999999999999999985443

>KOG0772|consensus

Probab=99.93  E-value=2.2e-24  Score=169.48  Aligned_cols=200  Identities=22%  Similarity=0.408  Sum_probs=157.7

Q ss_pred             ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEe------cccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +||...++|.+|+|..+ .+++++.||++++|++.+.+....+.      +...+++.++|++||..||+|+.||.|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            58999999999999654 68899999999999997655433322      234568999999999999999999999999


Q ss_pred             ECCCce---EEEEEecCCc--cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecC--CCCCeEEEEECCCCCEE
Q psy4393          97 ELSSGK---CLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPA--HSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        97 d~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~--~~~~i~~~~~~~~~~~l  168 (247)
                      +.....   ..+.-++|..  .|.++.|+++|++|++-+.|+.+++||++..+ ++.....  ...+-+..+|+|+.+++
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI  424 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence            974321   1222345655  79999999999999999999999999999754 3333221  12345667999999999


Q ss_pred             EEecC------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         169 VSSSY------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       169 ~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ++|+.      .|.+.+||..+.+.+..+... ...|..+.|+|.=+.|.+|+.||.++||=
T Consensus       425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEE
Confidence            99863      467999999888877766544 45677889999988999999999999873

>KOG0301|consensus

Probab=99.92  E-value=8.3e-24  Score=171.22  Aligned_cols=195  Identities=30%  Similarity=0.512  Sum_probs=167.1

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      -+++.+|...|.++....++. +++|+.|.++++|..  +++...+.+|...|.++..-|++ .++||+.|.+|++|.- 
T Consensus        94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-  168 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-  168 (745)
T ss_pred             hhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-
Confidence            467789999999999888888 899999999999975  44555689999999999999987 7899999999999986 


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                       ++.++++.+|.+.|+.+++-+++ .+++++.||.|++|++ +++.+.+..+|...+.++....++..++++++|+++++
T Consensus       169 -~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  169 -GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI  245 (745)
T ss_pred             -CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence             67788999999999999998864 5788999999999999 78889999999999999998888899999999999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |+..  ++.+.+.. ....+.++.+-++|. +++|++||.||||..+
T Consensus       246 W~~~--e~~q~I~l-PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  246 WKKD--ECVQVITL-PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eecC--ceEEEEec-CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            9876  44444433 334677777777776 7788889999999754

>KOG1036|consensus

Probab=99.92  E-value=3.8e-23  Score=153.04  Aligned_cols=203  Identities=21%  Similarity=0.341  Sum_probs=154.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ...|+++.|+|.++.|++++.||.+++|+.........+ .|..++.+++|.+ ...+++|+-||.|+++|+.++... .
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence            568999999999999988999999999998766444444 4788999999987 457899999999999999988754 4


Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      +..|...+.|+...+....+++|++|+.|++||.+.......+.. ...|.++..  .+..|++|+.+..+.+||+++..
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence            667899999999999999999999999999999996443333332 235655554  34566667777777777776531


Q ss_pred             eee------------------------------------------------ee----ccC----CCCCeEEEEECCCCCE
Q psy4393         187 CLK------------------------------------------------TL----IDD----DNPPVSFVKFSPNGKY  210 (247)
Q Consensus       187 ~~~------------------------------------------------~~----~~~----~~~~v~~~~~s~~~~~  210 (247)
                      ...                                                .+    ...    ...||+.++|+|-.+.
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            100                                                00    000    0136889999999999


Q ss_pred             EEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         211 ILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      |++|+.||.|.+||....+-+..+.
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~  271 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLA  271 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhcc
Confidence            9999999999999998876554433

>KOG0269|consensus

Probab=99.92  E-value=2.4e-24  Score=176.21  Aligned_cols=207  Identities=22%  Similarity=0.378  Sum_probs=169.8

Q ss_pred             EEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECC
Q psy4393          22 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~   99 (247)
                      .+..|.+.+.++.|++.. .+|++|+.||.|+.||+........+.+....|.++.|+| .+..++++.+.|.+.+||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            456899999999999854 5788999999999999998888888888888899999999 57889999999999999998


Q ss_pred             Cc-eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-CCCeEEEEECCCCC-EEEEecC--C
Q psy4393         100 SG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGS-LIVSSSY--D  174 (247)
Q Consensus       100 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~--d  174 (247)
                      .. ++...+.+|.++|.|+.|+|++.+||||+.|+.++|||..+++.......+ ..++.+++|-|... +|++++.  |
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence            64 456678899999999999999999999999999999999866532222222 35889999999766 5666653  6


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      -.|+|||++..-.....+..|...++.++|.. |-..|.+++.||.|..--.++.
T Consensus       288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            68999999987766666677778889999976 4567788999998776554443

>KOG0302|consensus

Probab=99.92  E-value=2.2e-23  Score=158.16  Aligned_cols=208  Identities=28%  Similarity=0.475  Sum_probs=162.2

Q ss_pred             eEEEEEecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCC----------------CeEEEEEecccCCeEEEEECC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD----------------GKFEKTISGHKLGISDVAWSS   79 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~----------------~~~~~~~~~~~~~v~~~~~~~   79 (247)
                      .+......|.+.+..+.-++-++  +.++-+..|.|+||++..                .+.+.++.+|...=..++|+|
T Consensus       142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence            34444457888999988888765  444556889999999632                123345667777778899999


Q ss_pred             C-CCEEEEEcCCCeEEEEECCCceEE---EEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCe---EEEeecC
Q psy4393          80 D-SRLLVSGSDDKTLKIWELSSGKCL---KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGK---CLKTLPA  151 (247)
Q Consensus        80 ~-~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~---~~~~~~~  151 (247)
                      - ...+++|..-+.|++|...++.-.   ..+.+|...|..++|+|.. ..|++++.||.|+|||+|.+.   ++.. ++
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence            3 234778888889999999886532   2456788899999999954 688999999999999999883   3333 78


Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce---eeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCC
Q psy4393         152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       152 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~  227 (247)
                      |.+.|+.+.|+.+-.+||+|+.||.++|||++.-+   ++.. +..|..+|+++.|+|.. ..|++++.|++|.+||+..
T Consensus       301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999999999988899999999999999998643   3333 34567899999999975 5677888999999999754

>KOG0303|consensus

Probab=99.92  E-value=7.9e-23  Score=156.02  Aligned_cols=216  Identities=22%  Similarity=0.418  Sum_probs=173.8

Q ss_pred             EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeE
Q psy4393          23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTL   93 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i   93 (247)
                      ++||+++|..++|+| +...+|+|+.|-+|.||.+..+       +....+.+|...|--+.|+|. .+.|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            358999999999999 5567899999999999998643       235567899999999999995 5678899999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC-eEEEEECCCCCEEEEec
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~  172 (247)
                      .+||+.+++.+..+. |.+.|.+++|+.+|+++++.+.|..|++||.+.++.+..-.+|.+. -..+.|-.++.++.+|-
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            999999999887877 9999999999999999999999999999999999998887777653 23456778888444442


Q ss_pred             ---CCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEccCCc
Q psy4393         173 ---YDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       173 ---~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                         .+.++-+||..+-+....+.. .....|..--|+||...++.++ .|+.||-|+.....|.+-|...+.
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~  307 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS  307 (472)
T ss_pred             ccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence               356899999876543322222 2334566677899999888766 699999999998888877665544

>KOG0300|consensus

Probab=99.91  E-value=4.1e-23  Score=153.97  Aligned_cols=206  Identities=29%  Similarity=0.527  Sum_probs=173.9

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEec------CC------------------------------C----e
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA------YD------------------------------G----K   60 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~------~~------------------------------~----~   60 (247)
                      .++.||.+.|.+++|++.+.++++++.|++-.||..      ..                              +    .
T Consensus       184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            456799999999999999999999999999999951      00                              0    0


Q ss_pred             EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEEC
Q psy4393          61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (247)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (247)
                      .+..+.+|...|.+..|-..|+.+++++.|.+-.+||++++..+..+.+|......++-+|...++++.+.|.+.++||.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            12346778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         141 RTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       141 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                      +.. ..+..|++|...|+++.|..+.+ +++|+.|.+|++||+++-. .+.++.  -.++++.++.+..++.++.-..+.
T Consensus       344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             hhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCc
Confidence            843 34678899999999999987654 7899999999999998754 233332  235678889998888888888888


Q ss_pred             eEEEEECCCcc
Q psy4393         219 TLKLWDSKVVT  229 (247)
Q Consensus       219 ~i~vwd~~~~~  229 (247)
                      .|++||++...
T Consensus       421 qvRlfDlnG~R  431 (481)
T KOG0300|consen  421 QVRLFDLNGNR  431 (481)
T ss_pred             eEEEEecCCCc
Confidence            99999987653

>KOG2096|consensus

Probab=99.91  E-value=1e-22  Score=151.73  Aligned_cols=204  Identities=22%  Similarity=0.418  Sum_probs=151.8

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE-----EEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKI   95 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v   95 (247)
                      .+++|.+.|++++|+.||++|++++.|+.|++|+..+-..     .+. .-.....+.+.|.||-+-++ +......+++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4679999999999999999999999999999999865321     111 11122457789999876554 4445568999


Q ss_pred             EECCCc---eEEEE---------EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC
Q psy4393          96 WELSSG---KCLKT---------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (247)
Q Consensus        96 ~d~~~~---~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  163 (247)
                      |.+...   .....         -+.|.-.+..+....++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            876432   11110         11233345556666788899999999999999999 888888776655666778999


Q ss_pred             CCCEEEEecCCCeEEEEeCC---Ccee--e-eee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         164 DGSLIVSSSYDGLCRIWDTA---SGQC--L-KTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~---~~~~--~-~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +|+++++++..-.+++|.+-   .|+.  . +.+ +.++.+.|..++|+++.+.+++.+.||.++|||.+.
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            99999999999999999753   2221  1 111 245678899999999999999999999999999753

>KOG2055|consensus

Probab=99.91  E-value=4.8e-22  Score=154.40  Aligned_cols=200  Identities=18%  Similarity=0.324  Sum_probs=170.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCCceE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .++|+++.|+|....|++|+.|+.+++|.+..  ...++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            57899999999999999999999999998753  334556666678899999999998 899999999999999988764


Q ss_pred             EE--EEecCC-ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         104 LK--TLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       104 ~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      .+  ...+.. ..+.....+|++++++..+..|.|++....+++.+..++. .+.+..++|+.+++.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            32  222222 2355667899999999999999999999999988888775 5789999999999999999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      |++...++.++.......-+.++.+++++|||+|+..|.|.|||.++
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            99999999888776665667889999999999999999999999654

>KOG1539|consensus

Probab=99.91  E-value=1.4e-22  Score=167.15  Aligned_cols=202  Identities=26%  Similarity=0.444  Sum_probs=178.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ..+++++.++.|++.+.|...|.|.+|++..|....++   ..|..+|++++...-++.+++++.+|.+.+||.++....
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            67899999999999999999999999999998887777   478899999999988899999999999999999988776


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ..++-. ..+.++..+....+++.+..|-.|+++|..+.+.++.+.+|.+.|++++|+|||++|++++.|+.|++||+.+
T Consensus       529 ~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            666643 4467778888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-CeEEEEECCCcceEE
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDSKVVTPAI  232 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~  232 (247)
                      ++++-.+...  .+...+.|+|+|++||+...| +-|++|--+.....+
T Consensus       608 ~~lID~~~vd--~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~v  654 (910)
T KOG1539|consen  608 GTLIDGLLVD--SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV  654 (910)
T ss_pred             cceeeeEecC--CcceeeEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence            9988766443  456889999999999999998 689999876655443

>KOG1332|consensus

Probab=99.91  E-value=2e-23  Score=150.06  Aligned_cols=203  Identities=24%  Similarity=0.370  Sum_probs=168.3

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC---eEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEEEC
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..|...|..+...--|++||+|+.|+.|+|+...+.   +.+..+.+|.++|..++|..  -|.+|++++-||.|.+|.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            478889999999999999999999999999998753   45678999999999999976  7999999999999999998


Q ss_pred             CCceE--EEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCC---eEEEeecCCCCCeEEEEECCC---C---
Q psy4393          99 SSGKC--LKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTG---KCLKTLPAHSDPVSAVHFNRD---G---  165 (247)
Q Consensus        99 ~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~---  165 (247)
                      .+++-  ......|...|++++|.|.  |-.|+.++.||.|.+++.+..   ...+...+|.-.+++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            87743  2345678889999999884  568899999999999998764   123445688888999999985   4   


Q ss_pred             --------CEEEEecCCCeEEEEeCCCceeee-eeccCCCCCeEEEEECCCC----CEEEEEEcCCeEEEEECC
Q psy4393         166 --------SLIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDSK  226 (247)
Q Consensus       166 --------~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~~  226 (247)
                              +.|++|+.|..|+||+..+++.+. ..+..|..-|..++|.|.-    .+||++++||++.||..+
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                    469999999999999988764332 2255666778889999974    589999999999999765

>KOG0302|consensus

Probab=99.91  E-value=9.3e-23  Score=154.78  Aligned_cols=202  Identities=25%  Similarity=0.490  Sum_probs=157.8

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEE---EEEecccCCeEEEEECCC-CCEEEEEcCCC
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAWSSD-SRLLVSGSDDK   91 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~   91 (247)
                      ....+++.+|...=+++.|||-.. .|++|.--+.|++|...++...   ..+.+|...|.++.|+|. ...+++|+.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            445788899999999999999433 4777777788999998876543   346679999999999995 45789999999


Q ss_pred             eEEEEECCCc---eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---CeEEEeecCCCCCeEEEEECCCC
Q psy4393          92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus        92 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      .|+|||++.+   .++ ..++|.+.|+.+.|+....+||+|+.||.++|||+|+   ++++..++-|..+|+++.|+|..
T Consensus       281 sIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e  359 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE  359 (440)
T ss_pred             eEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence            9999999987   333 3488999999999999888999999999999999985   55788899999999999999954


Q ss_pred             -CEEEEecCCCeEEEEeCCCcee--------ee--------e-eccCCCCCeEEEEECCCCC-EEEEEEcCCe
Q psy4393         166 -SLIVSSSYDGLCRIWDTASGQC--------LK--------T-LIDDDNPPVSFVKFSPNGK-YILAATLDNT  219 (247)
Q Consensus       166 -~~l~~~~~dg~i~v~d~~~~~~--------~~--------~-~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  219 (247)
                       ..+++++.|.+|.+||+....-        ..        - +.......+..+.|+++-. +|++.+.||-
T Consensus       360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence             4778889999999999863211        00        0 1111233455678888754 5666666763

>KOG0639|consensus

Probab=99.91  E-value=2.3e-23  Score=163.46  Aligned_cols=197  Identities=22%  Similarity=0.442  Sum_probs=167.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ..-|.++.+.|||+.|++|++-.++.|||+....  ....+......+..++.+||.+..+++..||.|.|||+.+...+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            3458899999999999999999999999986543  33344444456788999999999999999999999999999999


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE--------------------------------------
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--------------------------------------  146 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------------------------------------  146 (247)
                      +.+++|.+.+.|+.++++|..|-+|+-|.+++.||++.++.+                                      
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence            999999999999999999999999999999999999875321                                      


Q ss_pred             --EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         147 --KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       147 --~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                        ..+..|+..|.++.|.+.|+++++.+.|..+..|...-|..+  +...+.++|.++.+|-|.+++++|+.|....||+
T Consensus       625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--FqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce--eeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence              112345677899999999999999999999999987766544  3446678899999999999999999999999986


Q ss_pred             C
Q psy4393         225 S  225 (247)
Q Consensus       225 ~  225 (247)
                      +
T Consensus       703 V  703 (705)
T KOG0639|consen  703 V  703 (705)
T ss_pred             E
Confidence            4

>KOG2048|consensus

Probab=99.90  E-value=5.9e-21  Score=154.48  Aligned_cols=203  Identities=25%  Similarity=0.396  Sum_probs=165.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE-EEecc-cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      -..+|.++||+...+.||.+-.+|.|.+|+....-... .+.++ ...|..++|++ +..|++.+.+|.|.-||+-+++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence            36889999999999999999999999999998754443 34444 45699999995 55688888999999999999998


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      ...+....+.|++++.+|.+..++.|+.||.+..++...+....  .+....+.+.++.|+|++..+++|+.||.|++||
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence            88888888999999999999999999999988888887776543  3445568899999999999999999999999999


Q ss_pred             CCCceeeeeec------cC-CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         182 TASGQCLKTLI------DD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       182 ~~~~~~~~~~~------~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +..++......      .. ...-|..+.|-.+ ..|++|...|.|.+||...++.
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcch
Confidence            99887665211      11 2334566666544 4799999999999999877653

>KOG4328|consensus

Probab=99.90  E-value=3.5e-22  Score=154.98  Aligned_cols=203  Identities=19%  Similarity=0.308  Sum_probs=161.6

Q ss_pred             ecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEE
Q psy4393          24 AGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~   96 (247)
                      +-+.++|++++|+|..+  ++|+|...|.|-+||...    ..-...+..|..+|.++.|+| +...+++.+.||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            34789999999999654  678889999999999842    223345677889999999999 45679999999999999


Q ss_pred             ECCCceE--EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-EEeecCCCCCeEEEEECCCCC-EEEEec
Q psy4393          97 ELSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGS-LIVSSS  172 (247)
Q Consensus        97 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~  172 (247)
                      |+++...  +..+......+..+.++.+...++++..=|.+.+||++++.. ...+..|...|..|+++|... +|++++
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s  342 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS  342 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence            9987542  223322334566778888777788887778999999998654 666777888999999999654 789999


Q ss_pred             CCCeEEEEeCCCceeeee---eccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         173 YDGLCRIWDTASGQCLKT---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      .|++.+|||++.-.....   ....|...|....|||++-.|++.+.|++|+|||..
T Consensus       343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            999999999987544432   123566789999999999889999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=4.4e-20  Score=145.03  Aligned_cols=211  Identities=16%  Similarity=0.186  Sum_probs=157.5

Q ss_pred             CeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC-eEEEEECCCceEEEE
Q psy4393          29 AVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK-TLKIWELSSGKCLKT  106 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~  106 (247)
                      .+..++|+|+++.++++ ..++.+++||..+.+....+.. ...+..++|+|+++.++++..++ .+.+||..+++....
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            35678999999977654 5689999999988766655542 33467899999999998888765 567789988776554


Q ss_pred             EecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEeecCCC-----C--CeEEEEECCCCCEEEE-ecCCCeE
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHS-----D--PVSAVHFNRDGSLIVS-SSYDGLC  177 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~-~~~dg~i  177 (247)
                      +... .....+.|+|+++.++++ ..++.+++||+++++.+..+..+.     .  ....++|+|+++++++ .+.++.+
T Consensus       153 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       153 VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            4322 334678999999988554 468999999999987766543221     1  2245789999998654 3456789


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEccCCcccce
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYF  243 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~  243 (247)
                      .+||+.+++.......  ...+..++|+|+|++|+++. .+|.|++||.++..++..++....|+.+
T Consensus       232 ~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  296 (300)
T TIGR03866       232 AVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGV  296 (300)
T ss_pred             EEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccccee
Confidence            9999988876654432  23578899999999998864 6899999999999988888777666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270|consensus

Probab=99.90  E-value=2.9e-22  Score=154.79  Aligned_cols=208  Identities=25%  Similarity=0.345  Sum_probs=163.3

Q ss_pred             ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCCc
Q psy4393          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .+|+..|.+++|+..-+ .||+|+.|.+|++||+.++++...+..|...|.++.|+|. ...+++|+.|+++.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            36899999999988654 6789999999999999999999999989999999999994 678999999999999999853


Q ss_pred             eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECCCC-CEEEEecCCCeEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCR  178 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  178 (247)
                      ......-...+.|..+.|+|.. ..++++..||.++-+|+|.. +++..+++|.++|.++++++.- .++++++.++.++
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            2222111234568888999865 45677789999999999975 7899999999999999998854 4788899999999


Q ss_pred             EEeCCCceeeeeeccC-CCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcceE
Q psy4393         179 IWDTASGQCLKTLIDD-DNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      +|++............ .-+...|.++.|+-. +++.|+..+.++|||..+..++
T Consensus       400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9998654332111111 112356677777765 5667788889999998877654

>KOG0641|consensus

Probab=99.89  E-value=2.9e-20  Score=132.83  Aligned_cols=204  Identities=25%  Similarity=0.438  Sum_probs=165.5

Q ss_pred             EEecCCCCeEEEEECCC----CCEEEEEe-CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPN----GEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~----~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ++.-|.+.|..++|..+    |..|++++ .|-.|++=|...+....-+.+|.+.|.++ ++-++-.+++|+.|.+|++|
T Consensus       131 e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfw  209 (350)
T KOG0641|consen  131 EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFW  209 (350)
T ss_pred             eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEE
Confidence            34458899999999643    34666654 34566666777788888899999988876 34457889999999999999


Q ss_pred             ECCCceEEEEEec-------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393          97 ELSSGKCLKTLKG-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus        97 d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      |++-..++..+..       ..+.|..++..|.|.++++|-.|....+||++.++.++.+..|...|.|+.|+|.-.+++
T Consensus       210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yll  289 (350)
T KOG0641|consen  210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL  289 (350)
T ss_pred             eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE
Confidence            9987777766532       125688899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         170 SSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +++.|..|++-|+...   +........+...+..+.|+|+.--+++.+.|.++.+|-.+
T Consensus       290 t~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  290 TCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9999999999998642   22222334555667789999999889999999999999653

>KOG0646|consensus

Probab=99.89  E-value=1.6e-21  Score=151.65  Aligned_cols=184  Identities=25%  Similarity=0.456  Sum_probs=154.3

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---------CCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCe
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKT   92 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~   92 (247)
                      .+|-.+|+++.|+-||.++++|+.||.|.+|.+.         +......+..|..+|+++...+.  ..++++++.|.+
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            4688999999999999999999999999999752         23456778889999999988765  457999999999


Q ss_pred             EEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC----------------eEEEeecCCCC--
Q psy4393          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG----------------KCLKTLPAHSD--  154 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----------------~~~~~~~~~~~--  154 (247)
                      +++||+..+..+..+. ....+.++..+|.+..++.|+.+|.|.+.++...                ..+..+.+|.+  
T Consensus       200 ~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             EEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            9999999998877766 4566889999999999999999999988877432                23455667777  


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      +|+|++++-||.+|++|+.||.+++||+.+.++++++.. ..++|+.+.+.|-.+
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-SKGPVTNLQINPLER  332 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-hccccceeEeecccc
Confidence            999999999999999999999999999999988877653 346788888865433

>KOG0639|consensus

Probab=99.89  E-value=5.7e-22  Score=155.75  Aligned_cols=200  Identities=21%  Similarity=0.407  Sum_probs=160.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEE--ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      .|.+-|.+++++...+++++|+ .|.|+|||+....   .+..+  ......+.++...|||+.|++|+...++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            5888888999999999999987 4789999986432   12222  2234568899999999999999999999999997


Q ss_pred             CceEE--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         100 SGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       100 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ....-  ..+........+++.+||.++.++++.||.|.|||+.+...+..++.|...+.|+.+++||..|-+|+.|.++
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            64321  1222222334567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeee---------------------------------------eccCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         178 RIWDTASGQCLKT---------------------------------------LIDDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       178 ~v~d~~~~~~~~~---------------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                      +-||+++++.+..                                       ....+.+.|..+.|.+.|+++++.+.|+
T Consensus       576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchh
Confidence            9999998643211                                       0122345677899999999999999999


Q ss_pred             eEEEEEC
Q psy4393         219 TLKLWDS  225 (247)
Q Consensus       219 ~i~vwd~  225 (247)
                      .+..|..
T Consensus       656 lLnawrt  662 (705)
T KOG0639|consen  656 LLNAWRT  662 (705)
T ss_pred             hhhhccC
Confidence            8888764

>KOG2445|consensus

Probab=99.89  E-value=2.1e-20  Score=138.75  Aligned_cols=202  Identities=25%  Similarity=0.430  Sum_probs=157.4

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEEE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d   97 (247)
                      .+|..-|.++.|.+.|+++|+|+.|++++|||...    ..+....+.|.+.|..+.|.+  -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            37888999999999999999999999999999532    234556788999999999976  489999999999999997


Q ss_pred             CCC------c---eEEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe----------------------
Q psy4393          98 LSS------G---KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK----------------------  144 (247)
Q Consensus        98 ~~~------~---~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~----------------------  144 (247)
                      -..      +   ....++....+.|..+.|.|.  |-.+|+++.||.+|||+.....                      
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521      1   123455666778999999884  5678999999999999763210                      


Q ss_pred             ---------------------------------------------EEEeecCCCCCeEEEEECCCC----CEEEEecCCC
Q psy4393         145 ---------------------------------------------CLKTLPAHSDPVSAVHFNRDG----SLIVSSSYDG  175 (247)
Q Consensus       145 ---------------------------------------------~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg  175 (247)
                                                                   .+..+..|..+|+.++|.|+-    .+||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence                                                         011223456789999999962    4789999999


Q ss_pred             eEEEEeCCCce-----------------e--eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         176 LCRIWDTASGQ-----------------C--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       176 ~i~v~d~~~~~-----------------~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                       |+||.+....                 .  +...+..|+..|..+.|+-.|..|++.+.||.||+|..+
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence             9999987311                 0  111244677889999999999999999999999999864

>KOG0301|consensus

Probab=99.89  E-value=2.4e-21  Score=157.10  Aligned_cols=205  Identities=25%  Similarity=0.459  Sum_probs=172.5

Q ss_pred             ceEEEEEecCCCCeEE-EEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          17 YVLKFTLAGHTKAVSS-VKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~-~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      |.....+.+|.+-|.. ++|.+ ++-++++|+.|+.+.+|..........+.+|...|.+++...++. +++++.|.+++
T Consensus        47 ~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Tak  125 (745)
T KOG0301|consen   47 YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAK  125 (745)
T ss_pred             cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceE
Confidence            4444556678877777 88876 444688999999999999999999999999999999998887776 89999999999


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      +|...  ++...+.+|...|+++..-|.+ .++||+.|..|++|.-  ++.++.+.+|...|+.+++-+++. +++++.|
T Consensus       126 vW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsND  199 (745)
T KOG0301|consen  126 VWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSND  199 (745)
T ss_pred             Eecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCC
Confidence            99874  4555689999999999998877 8999999999999985  778899999999999999988754 7889999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      |.|+.|++ +++.+.... .+..-+.+++..++++.++++++|++++||+.....+
T Consensus       200 g~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q  253 (745)
T KOG0301|consen  200 GSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQ  253 (745)
T ss_pred             ceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecCceEE
Confidence            99999999 455555443 4556678888888889999999999999999874433

>KOG0647|consensus

Probab=99.89  E-value=6.8e-21  Score=140.93  Aligned_cols=189  Identities=26%  Similarity=0.379  Sum_probs=146.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC--EEEEEcCCCeEEEEECCCce
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR--LLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~  102 (247)
                      .|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..|..+|..+.|-+...  .|+||+.|.+|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            47899999999999999999999999999999888 4567778999999999987655  79999999999999998765


Q ss_pred             EEEEEecC-----------------------------------------CccEEEEEEcCCCCEEEEeeCCCCEEEEECC
Q psy4393         103 CLKTLKGH-----------------------------------------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus       103 ~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                      .+..+.-.                                         .-.++|++..++....+.|+-+|.+-+..+.
T Consensus       149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            54433210                                         1124566666666666777777777777666


Q ss_pred             CC--eEEEeecCCCC---------CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCE
Q psy4393         142 TG--KCLKTLPAHSD---------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (247)
Q Consensus       142 ~~--~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  210 (247)
                      .+  +.-..|+.|..         +|.+++|+|....|++++.||...+||-.....++.. ..+..+|++..|+.+|.+
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcCCCccceeEecCCCCE
Confidence            54  22334444442         4778999999899999999999999998766555443 345678999999999999


Q ss_pred             EEEEE
Q psy4393         211 ILAAT  215 (247)
Q Consensus       211 l~~~~  215 (247)
                      ++.+.
T Consensus       308 faYA~  312 (347)
T KOG0647|consen  308 FAYAL  312 (347)
T ss_pred             EEEEe
Confidence            98764

>KOG2048|consensus

Probab=99.89  E-value=4.1e-20  Score=149.68  Aligned_cols=214  Identities=24%  Similarity=0.375  Sum_probs=176.0

Q ss_pred             CCCCCceEEEEEecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          12 NPKPNYVLKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ++.++|.+...+.++. +.|-+++|++ +.+|++.+.+|.|..||+.+.+....+....+.|.+++.+|.+..++.+++|
T Consensus        53 N~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd  131 (691)
T KOG2048|consen   53 NLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD  131 (691)
T ss_pred             ccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC
Confidence            4566788888888775 6799999994 5567788899999999999999888888888899999999999999999999


Q ss_pred             CeEEEEECCCceEE--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-----cC---CCCCeEEEE
Q psy4393          91 KTLKIWELSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-----PA---HSDPVSAVH  160 (247)
Q Consensus        91 ~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~---~~~~i~~~~  160 (247)
                      |.+..++...++..  ..+....+++.++.|+|++..+++|+.||.|++||...+..+...     ..   ....|.++.
T Consensus       132 Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  132 GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence            98887777766533  234445688999999999999999999999999999998876622     11   223467888


Q ss_pred             ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +-.++ .+++|...|.|.+||...+...+.... +...|.+++.++++.++++++.|+.|.-|.....
T Consensus       212 ~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~-h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  212 FLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC-HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             EeecC-cEEEecCCceEEEEcccCcchhhhhhh-hhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            87655 588999999999999999887765433 4567899999999999999999999888876554

>KOG1408|consensus

Probab=99.88  E-value=2e-21  Score=158.53  Aligned_cols=200  Identities=22%  Similarity=0.409  Sum_probs=170.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC---CCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +-...+.+++.+|+|++||+|..-|.++||++...+....+..|+..|.++.++.   ..++|++++.|..|++||+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            4567899999999999999999999999999998888888999999999999985   3567899999999999997531


Q ss_pred             -eEEEEEec-------------------------------------------------CCccEEEEEEcCCCCEEEEeeC
Q psy4393         102 -KCLKTLKG-------------------------------------------------HSNYVFCCNFNPQSNLIVSGSF  131 (247)
Q Consensus       102 -~~~~~~~~-------------------------------------------------~~~~v~~~~~~~~~~~l~~~~~  131 (247)
                       ..+.++.+                                                 ....++.++..|..+++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence             00001000                                                 1233677888899999999999


Q ss_pred             CCCEEEEECCCCeEEEeec---CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393         132 DESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~  208 (247)
                      |+.|++||+.+++..+.|+   .|++....+..+|.|-++++.+.|..+.++|..++++..... +|...|+.+.|.+|-
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDC  695 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeeeecccc
Confidence            9999999999999988886   455667788999999999999999999999999999987765 455679999999999


Q ss_pred             CEEEEEEcCCeEEEEEC
Q psy4393         209 KYILAATLDNTLKLWDS  225 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd~  225 (247)
                      ++|++.+.||-|-||.+
T Consensus       696 kHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  696 KHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             hhheeecCCceEEEEEC
Confidence            99999999999999986

>KOG2096|consensus

Probab=99.88  E-value=1e-20  Score=141.19  Aligned_cols=196  Identities=27%  Similarity=0.435  Sum_probs=159.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC---Cc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS---SG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~  101 (247)
                      .|.-.|..+-....+.+|++++.|-.|.+|+.. |+.+..+......-...+.+|+|+++++++-...+++|.+-   .|
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            467788888888889999999999999999997 77777777666667778999999999999999999999862   22


Q ss_pred             -----eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-------eEEEee-----cCCCCCeEEEEECCC
Q psy4393         102 -----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-------KCLKTL-----PAHSDPVSAVHFNRD  164 (247)
Q Consensus       102 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~-----~~~~~~i~~~~~~~~  164 (247)
                           ..+..+++|.+.|...+|+++...+++.+.||.+++||..-.       ..++..     .+...++ .+..+|+
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~  342 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPS  342 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCC
Confidence                 234578899999999999999999999999999999997531       112222     1222344 6899999


Q ss_pred             CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      |+.|+.. ....+++|..++++....+..-+...|.+++|+++|+++++++ |..++++-
T Consensus       343 g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  343 GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            9988765 4667999999998877777777788999999999999999998 77888874

>KOG1274|consensus

Probab=99.88  E-value=1.2e-20  Score=157.42  Aligned_cols=193  Identities=22%  Similarity=0.362  Sum_probs=163.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      +-++..++|+.+|+++|+|+.|-.|++-+..+......+.+|..+|.++.++|.+++|++.+.||.|++||+.++.....
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            55788999999999999999999999999999988999999999999999999999999999999999999998876655


Q ss_pred             EecC--------CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC--CCCCeEEEEECCCCCEEEEecCCCe
Q psy4393         107 LKGH--------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus       107 ~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      +.+-        ...+..++|+|++..++....|+.|++|+...+.....+..  +...+.++.|+|+|++||+++.+|.
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~  255 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ  255 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence            5421        23355689999988888889999999999999887776643  2334889999999999999999999


Q ss_pred             EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      |.|||..+.+.     ......|.+++|.|+..-+-.....|...+|-
T Consensus       256 I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  256 ILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             EEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence            99999987221     23346789999999998887777677766664

>KOG1036|consensus

Probab=99.88  E-value=1.9e-20  Score=138.79  Aligned_cols=186  Identities=25%  Similarity=0.419  Sum_probs=144.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      .|..++.+++|.+ ...+++|+.||.|+.+|+.++.. ..+..|..++.++..++....+++|+.|+.|++||.+.....
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            4789999999987 45678899999999999977654 455668889999999998888999999999999999864443


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---------------E-----------------------
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---------------L-----------------------  146 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------------~-----------------------  146 (247)
                      ..+. ....|.++...  ++.|+.|+.+..+.+||+++-..               +                       
T Consensus       130 ~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  130 GTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF  206 (323)
T ss_pred             cccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence            3333 23357666554  66788888888888888875210               1                       


Q ss_pred             ----------EeecCCC---------CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393         147 ----------KTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       147 ----------~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                                ..|+.|.         .||.+|+|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+
T Consensus       207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~d  285 (323)
T KOG1036|consen  207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMD  285 (323)
T ss_pred             CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccC
Confidence                      1122332         26899999999899999999999999999988766655433 456899999999


Q ss_pred             CCEEEEEEc
Q psy4393         208 GKYILAATL  216 (247)
Q Consensus       208 ~~~l~~~~~  216 (247)
                      |..||.++.
T Consensus       286 G~~LAia~s  294 (323)
T KOG1036|consen  286 GSLLAIASS  294 (323)
T ss_pred             CCeEEEEec
Confidence            999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=9.5e-19  Score=137.44  Aligned_cols=208  Identities=16%  Similarity=0.202  Sum_probs=151.7

Q ss_pred             EEecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE-cCCCeEEEEECC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELS   99 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~   99 (247)
                      .+..+ ..+.+++|+|+++.+ ++++.++.+++||..+++....+..+. .+..+.|+|+++.++++ ..++.+++||+.
T Consensus        26 ~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        26 TFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             EEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            33333 346789999999976 556778999999998887766555433 35678999999977654 568999999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC-CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC  177 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  177 (247)
                      +.+.+..+... ..+..+.|+|++..++++..++ .+.+||.++++........ .....+.|+|++.+++++ ..++.+
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v  181 (300)
T TIGR03866       104 TRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTV  181 (300)
T ss_pred             CCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEE
Confidence            88776666532 3357789999999999888765 4678899887765544332 345678999999988654 468999


Q ss_pred             EEEeCCCceeeeeeccC------CCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCCcceEEE
Q psy4393         178 RIWDTASGQCLKTLIDD------DNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~  233 (247)
                      .+||+.+++....+...      .......++|+|++++++.+ +.++.+.+||.++.+....
T Consensus       182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~  244 (300)
T TIGR03866       182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY  244 (300)
T ss_pred             EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            99999988765544211      11122458899999986554 4567899999987766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1524|consensus

Probab=99.87  E-value=2.1e-21  Score=153.71  Aligned_cols=184  Identities=26%  Similarity=0.415  Sum_probs=149.8

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ++..|.+.|.+-.|+|||.-|+++++||.|++|.- +|.....+.....+|.+++|.|+.+.++.+. .+.+.+-.+...
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n  176 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN  176 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccc
Confidence            44579999999999999999999999999999975 4444445556677899999999887776553 345666666666


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      ..+...++|++-|.++.|++..+++++|++|-..++||.. |+.+..-.+|+.+|++++|+|+ +.++.++.+ ..+   
T Consensus       177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R---  250 (737)
T KOG1524|consen  177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR---  250 (737)
T ss_pred             cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee---
Confidence            5666789999999999999999999999999999999975 6677777889999999999999 666666533 111   


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  222 (247)
                               +.....+.|..++||+||..+++|+..|.+.+
T Consensus       251 ---------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  251 ---------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ---------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence                     34455677899999999999999999987655

>KOG0290|consensus

Probab=99.87  E-value=1.2e-20  Score=139.03  Aligned_cols=217  Identities=22%  Similarity=0.375  Sum_probs=167.3

Q ss_pred             cCCCCeEEEEECCCCC-----EEEEEeCCCeEEEEecCC--CeEE--E-----EEecccCCeEEEEECC-CCCEEEEEcC
Q psy4393          25 GHTKAVSSVKFSPNGE-----WLASSSADKLIKIWGAYD--GKFE--K-----TISGHKLGISDVAWSS-DSRLLVSGSD   89 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~-----~l~~~~~dg~v~iw~~~~--~~~~--~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~   89 (247)
                      .|..+++.+-|.|+..     +||++  +..+++|.+..  .+..  .     +-..+..+++++.|+. +-++|.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5889999999999864     45554  56899998863  2211  1     1234567899999987 6678999999


Q ss_pred             CCeEEEEECCCce---EEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE---EEeecCCCCCeEEEEEC
Q psy4393          90 DKTLKIWELSSGK---CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        90 d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~  162 (247)
                      |-++.+||++++.   ....+.+|...|..++|..++ ..+|+.+.||.+|+||+|..+.   +.+-.....+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999863   345678899999999999855 5789999999999999997653   22222324577788898


Q ss_pred             CCC-CEEEEecCCC-eEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCc------ceEEE
Q psy4393         163 RDG-SLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVV------TPAII  233 (247)
Q Consensus       163 ~~~-~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~------~~~~~  233 (247)
                      +.. +++|+-..|+ .|.+.|++........+..|.+.|+.++|.|.. ..|++++.|..+.+||+.++      +|++.
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila  331 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA  331 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence            754 5777766654 788999998766555566788899999999975 58889999999999998653      58888


Q ss_pred             EccCCcccce
Q psy4393         234 CSTPLNLNYF  243 (247)
Q Consensus       234 ~~~~~~~~~~  243 (247)
                      |....+.|++
T Consensus       332 y~a~~EVNqi  341 (364)
T KOG0290|consen  332 YTAGGEVNQI  341 (364)
T ss_pred             hhccceeeee
Confidence            8888888775

>KOG4378|consensus

Probab=99.87  E-value=4.7e-21  Score=150.40  Aligned_cols=203  Identities=23%  Similarity=0.331  Sum_probs=165.7

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecC-C
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH-S  111 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~  111 (247)
                      ++......++++|+..+.|+|||+......+.++.|...|+++.+.....+|++++..|.|.+..+.++.....++.. .
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence            333334478889999999999999866666678899999999999999999999999999999999998877677644 3


Q ss_pred             ccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceee
Q psy4393         112 NYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       112 ~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      ..+.-+.++|..+ +|.+++.+|.|++||.....++..+ ..|..|...++|+|... +|++.+.|..|.+||.+..+..
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            4566889998765 4567899999999999877766654 58899999999999665 6788899999999999977665


Q ss_pred             eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc-ceEEEEccC
Q psy4393         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV-TPAIICSTP  237 (247)
Q Consensus       189 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~  237 (247)
                      ..+...  .|...++|+++|.+|++|+..|.|..||++.. .|+.++-.+
T Consensus       245 ~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  245 DRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             ceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            555433  46788999999999999999999999999976 465554443

>KOG0771|consensus

Probab=99.87  E-value=7.3e-21  Score=146.35  Aligned_cols=196  Identities=22%  Similarity=0.348  Sum_probs=154.2

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe--
Q psy4393          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--  108 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--  108 (247)
                      ..++|+++|..|++++.||.+|+|+............|...|.++.|+|||++|++.+.| ..+||+..++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999976666556667788899999999999999999999 89999999986554443  


Q ss_pred             cCCccEEEEEEcCCC---C--EEEEeeCCCCEEEEECCCCeE-----EEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         109 GHSNYVFCCNFNPQS---N--LIVSGSFDESVRIWDVRTGKC-----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~---~--~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      ........|.|+.++   .  +++.-...+.++.||+....-     .+........|++|+.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            222335567787766   2  233334456677777643221     111112234799999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +++..+-+..+.....|...|+.+.|+||.++++..+.|.++.|.-+..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999988888777777888999999999999999999999888886543

>KOG2106|consensus

Probab=99.87  E-value=2.9e-19  Score=140.60  Aligned_cols=193  Identities=24%  Similarity=0.449  Sum_probs=155.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce-----
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-----  102 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----  102 (247)
                      +-|.|++|.++|. +++|..+|.+.||+..+.+..+....|..+|.++....+|.++ +|++|..|..||-.-.+     
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccccc
Confidence            6799999999998 5689999999999997777766667999999999999998755 59999999999831100     


Q ss_pred             ------EE-----------------------------EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE
Q psy4393         103 ------CL-----------------------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (247)
Q Consensus       103 ------~~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (247)
                            .+                             ....+|....+.++.+|+.+++++++.|+.+++|+  ..+...
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence                  00                             11234556677888899999999999999999999  444444


Q ss_pred             eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         148 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       148 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ... -..++.|+.|+|.| .+|.|...|...+.|.++...+.... . +.++++++|+|+|.+||.|+.|+.|.||-...
T Consensus       403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            433 25688999999999 89999999999999999865544332 2 77899999999999999999999999998765


Q ss_pred             c
Q psy4393         228 V  228 (247)
Q Consensus       228 ~  228 (247)
                      .
T Consensus       479 ~  479 (626)
T KOG2106|consen  479 N  479 (626)
T ss_pred             C
Confidence            4

>KOG2106|consensus

Probab=99.86  E-value=4.6e-19  Score=139.48  Aligned_cols=197  Identities=19%  Similarity=0.343  Sum_probs=156.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe----------------------------------------EEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----------------------------------------FEKT   64 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~----------------------------------------~~~~   64 (247)
                      .|.+.|.+++...+|.+|- |++|..|..||..-.+                                        ....
T Consensus       285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            8999999999999998765 9999999999832110                                        0012


Q ss_pred             EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe
Q psy4393          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (247)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (247)
                      ..+|......++.+|+.+++++++.|+.+++|+  ..+...... ...+..|+.|+|.| .+|.|...|..-+.|.++..
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            234666777889999999999999999999999  233332222 34568899999999 99999999999999999866


Q ss_pred             EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       145 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      .+..-.. ..++++|+|+|+|.+||+|+.|+.|++|.+......... ......+|+.+.|++|+++|.+.+.|-.|..|
T Consensus       440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            6555444 889999999999999999999999999988765433322 22334889999999999999999999999999


Q ss_pred             ECCC
Q psy4393         224 DSKV  227 (247)
Q Consensus       224 d~~~  227 (247)
                      ....
T Consensus       519 ~~~~  522 (626)
T KOG2106|consen  519 KPSE  522 (626)
T ss_pred             cccc
Confidence            5443

>KOG4283|consensus

Probab=99.86  E-value=1.5e-19  Score=133.73  Aligned_cols=161  Identities=28%  Similarity=0.520  Sum_probs=134.9

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC---CCEEEEEcCCCeEEEEECCC
Q psy4393          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        25 ~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~  100 (247)
                      +|...|.++.|-| |.-.+.+++-|.++++||..+.+....+. -+..|.+-+|+|-   ..+|++|..+-.|++.|+..
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            6889999999999 45567778899999999998776655554 3556888888883   56788999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCC-eEEE--------------eecCCCCCeEEEEECCC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTG-KCLK--------------TLPAHSDPVSAVHFNRD  164 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~-~~~~--------------~~~~~~~~i~~~~~~~~  164 (247)
                      |.+.+.+.+|.+.|.++.|+|...+ +++|+.||.+++||++.. .+..              .-.+|.+.+..++|+.+
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD  257 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence            9999999999999999999997765 688999999999999853 2222              22456778999999999


Q ss_pred             CCEEEEecCCCeEEEEeCCCce
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      +.++++++.|..+++|+..+|+
T Consensus       258 ~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  258 ARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             chhhhhccCccceEEeecccCc
Confidence            9999999999999999998775

>KOG0642|consensus

Probab=99.86  E-value=4.1e-20  Score=146.90  Aligned_cols=222  Identities=23%  Similarity=0.402  Sum_probs=179.6

Q ss_pred             CCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------CeEEEEEecccCCeEEEEECCCCCEEEE
Q psy4393          15 PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--------GKFEKTISGHKLGISDVAWSSDSRLLVS   86 (247)
Q Consensus        15 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~   86 (247)
                      ..|..++++..|...|+.++|.|....|++|+.||.+.+|+++.        -+....+.+|.++|.+++..+++..+++
T Consensus       282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys  361 (577)
T KOG0642|consen  282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS  361 (577)
T ss_pred             eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence            34778889999999999999999999999999999999999832        1345578899999999999999999999


Q ss_pred             EcCCCeEEEEECCCc----------eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-------
Q psy4393          87 GSDDKTLKIWELSSG----------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-------  149 (247)
Q Consensus        87 ~~~d~~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------  149 (247)
                      |+.||.|+.|++...          .....+.+|.+.++.+.+++....|++++.||++++|+.....+ ..+       
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g  440 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG  440 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence            999999999965421          12345778999999999999999999999999999998754332 000       


Q ss_pred             --------------------------------------c--CCC-----CCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         150 --------------------------------------P--AHS-----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       150 --------------------------------------~--~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                                                            .  +..     ..+..+.++|...+.+++..|+.|+++|..+
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence                                                  0  000     1245567788888999999999999999999


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++.+.... .+...++++++.|+|.+|++++.||++++|....+.....+..+.
T Consensus       521 ~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  521 GKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cccchhee-eccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            88776543 334568999999999999999999999999988877766555443

>KOG1063|consensus

Probab=99.86  E-value=3e-20  Score=150.86  Aligned_cols=210  Identities=22%  Similarity=0.414  Sum_probs=164.6

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      |.....+.||...|++++.+|+|+++|++++..     .|++|+..+......+.+|.-.|+.++|+|||++|++++.|.
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            455567789999999999999999999987643     589999888777778999999999999999999999999999


Q ss_pred             eEEEEECCCce----EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC--eEEEe--ecCCCCCeEEEEECC
Q psy4393          92 TLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKT--LPAHSDPVSAVHFNR  163 (247)
Q Consensus        92 ~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~--~~~~~~~i~~~~~~~  163 (247)
                      ++.+|......    .....+.|..-|+.++|+|++.+++|++.|..+++|.....  +.+..  ...+..+++++++.|
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            99999875432    22346788888999999999999999999999999998876  44433  234577899999876


Q ss_pred             C-----CCEEEEecCCCeEEEEeCCCcee--------eeeec---cCCCCCeEEEEECCC--------C--CEEEEEEcC
Q psy4393         164 D-----GSLIVSSSYDGLCRIWDTASGQC--------LKTLI---DDDNPPVSFVKFSPN--------G--KYILAATLD  217 (247)
Q Consensus       164 ~-----~~~l~~~~~dg~i~v~d~~~~~~--------~~~~~---~~~~~~v~~~~~s~~--------~--~~l~~~~~d  217 (247)
                      -     +..+++|-+.|.|.+|.......        +....   ..+...|+.+.|.|.        .  ..|+.|+.|
T Consensus       675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D  754 (764)
T KOG1063|consen  675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDD  754 (764)
T ss_pred             cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccc
Confidence            2     33778899999999998541110        00011   122346788999875        2  356999999


Q ss_pred             CeEEEEECC
Q psy4393         218 NTLKLWDSK  226 (247)
Q Consensus       218 g~i~vwd~~  226 (247)
                      ..+++++.+
T Consensus       755 ~~vri~nv~  763 (764)
T KOG1063|consen  755 ESVRIFNVD  763 (764)
T ss_pred             ceeEEeecc
Confidence            999999764

>KOG0270|consensus

Probab=99.86  E-value=4.3e-20  Score=142.95  Aligned_cols=193  Identities=25%  Similarity=0.426  Sum_probs=150.5

Q ss_pred             CCEEEEEeCCCeEEEEecCCCe--EE-------------------EEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGK--FE-------------------KTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIW   96 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~--~~-------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~   96 (247)
                      |+++|.|+.+-.|.|||+.-..  ..                   ....+|...|.+++|+.. .+.|++|+.|.+|.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            5799999999999999974110  00                   012246667778888764 4578999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeE-EEeecCCCCCeEEEEECCCCC-EEEEecC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGS-LIVSSSY  173 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  173 (247)
                      |+.++++...+..|...|.++.|+|. ...+++|+.|+++.+.|+|.... -..++. .+.|..++|+|... .+++++.
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecCCCceeEEEecC
Confidence            99999999999989999999999985 57889999999999999995322 222332 46788999999765 5677788


Q ss_pred             CCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcceEEE
Q psy4393         174 DGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       174 dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ||.++-+|+|.. +++.++ ..|..+|.++++++.-. +|++++.|+.+++|+.....|..+
T Consensus       351 dG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             CceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence            999999999986 444443 35567899999998754 677889999999999887776444

>KOG2055|consensus

Probab=99.85  E-value=8.3e-20  Score=142.07  Aligned_cols=198  Identities=19%  Similarity=0.310  Sum_probs=158.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..+.....+|++++|+..+..|.|.+....+++....++. .+.|.++.|+.+++.|++.+.+|.|.+||+++..+++.+
T Consensus       304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            4566788899999999999999999999888887777664 556999999999999999999999999999998888877


Q ss_pred             ecCCc-cEEEEEEcCCCCEEEEeeCCCCEEEEECCC------CeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEE
Q psy4393         108 KGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRT------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCR  178 (247)
Q Consensus       108 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~  178 (247)
                      ....+ .-..++.++++.++|+|+..|.|.|||..+      .++++.+..-...|++|+|+++.++||.++.  +..++
T Consensus       383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr  462 (514)
T KOG2055|consen  383 VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR  462 (514)
T ss_pred             eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence            64322 124567778999999999999999999653      3344444444567999999999999988775  56788


Q ss_pred             EEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +..+.+-.....+...  .-..+++++|+|.+.+||.|..+|++.+|.+.
T Consensus       463 LVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  463 LVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            8887765544333222  23568999999999999999999999999753

>KOG0294|consensus

Probab=99.85  E-value=3.1e-19  Score=132.93  Aligned_cols=123  Identities=30%  Similarity=0.474  Sum_probs=111.9

Q ss_pred             EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCC--EEEEeeCCCCEEEEECC
Q psy4393          64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVR  141 (247)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~  141 (247)
                      .+..|..++++++.+  +.++++|+.|-+|++||+++......+-.|.+.|.++.|.+...  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            356788899999875  78999999999999999998888888888999999999998765  89999999999999999


Q ss_pred             CCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee
Q psy4393         142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       142 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      ....+..+++|.+.|+.++++|.+++-++.+.|+.+++||+-.++.-
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a  162 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA  162 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence            99999999999999999999999999999999999999999877643

>KOG0307|consensus

Probab=99.85  E-value=8.7e-21  Score=161.46  Aligned_cols=213  Identities=19%  Similarity=0.333  Sum_probs=164.6

Q ss_pred             CCCeEEEEECCCCCE----EEEEeCCCeEEEEecCC---C---eEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEE
Q psy4393          27 TKAVSSVKFSPNGEW----LASSSADKLIKIWGAYD---G---KFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKI   95 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~----l~~~~~dg~v~iw~~~~---~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v   95 (247)
                      ..+...++|.+.|..    ||.|..||.|.+|+...   +   ..+.....|.+.|..+.|++.. +.+++|+.+|.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356789999998776    88889999999999754   1   2234456789999999999964 58999999999999


Q ss_pred             EECCCceEEEEE--ecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCC--CeEEEEECCCCC-EEE
Q psy4393          96 WELSSGKCLKTL--KGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD--PVSAVHFNRDGS-LIV  169 (247)
Q Consensus        96 ~d~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~  169 (247)
                      ||+.+-+.-...  ....+.|.+++|+.. ...|++++.+|...+||+|..+.+-.+..+.+  .+..+.|+|+.. .++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999874322222  123467899999874 45678889999999999998877776665543  467899999864 556


Q ss_pred             EecCCC---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         170 SSSYDG---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       170 ~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +++.|.   .|.+||+|...........|...|.++.|++.+ ++|++++.|++|.+|+.++++.+-.+.+..+
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n  297 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN  297 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence            665543   699999987654434446677889999999977 7889999999999999999888776666444

>KOG0650|consensus

Probab=99.85  E-value=1.5e-19  Score=144.81  Aligned_cols=206  Identities=24%  Similarity=0.381  Sum_probs=154.7

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE--EEEEcCCC------
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL--LVSGSDDK------   91 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~------   91 (247)
                      .+.+.+|++.|.++...|.|.+|++|+.||+|+||.+.++.++..+.- ...|.+++|+|.+..  |+++-...      
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            344579999999999999999999999999999999999998877653 446888888886542  33332211      


Q ss_pred             --------------------------eEEEEECC----------------------------------------------
Q psy4393          92 --------------------------TLKIWELS----------------------------------------------   99 (247)
Q Consensus        92 --------------------------~i~v~d~~----------------------------------------------   99 (247)
                                                .+..|.-.                                              
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                      12233311                                              


Q ss_pred             ---CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393         100 ---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus       100 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                         .......++-..+.+.++.|+|...+|+.++ ...|++||+.....++.+......|..|+++|.|..|+.++.|+.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence               1111111112234577889999888888776 468999999887777777777778999999999999999999999


Q ss_pred             EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +..||+.-..........+...++.++|++.-.++++|+.||++.||-...
T Consensus       631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            999999865433333445566789999999999999999999999987653

>KOG1034|consensus

Probab=99.85  E-value=6e-19  Score=132.13  Aligned_cols=202  Identities=21%  Similarity=0.440  Sum_probs=159.3

Q ss_pred             cCCCCeEEEEECCC----CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~   99 (247)
                      .|.+....++|+-+    ..++|+++.-|.|+|.|...++....+.+|...|+.+.++|+. +++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36677778888654    3478888999999999999999999999999999999999975 688999999999999999


Q ss_pred             CceEEEEEe---cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-------------------------EEee--
Q psy4393         100 SGKCLKTLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-------------------------LKTL--  149 (247)
Q Consensus       100 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------------------~~~~--  149 (247)
                      +..++..+.   +|.+.|.++.|++++..+++++.|-.+++|++...+.                         ...+  
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            999988764   6888999999999999999999999999999873110                         0000  


Q ss_pred             -cCCCC------------------------------------------------------CeEE--EEECCCCCEEEEec
Q psy4393         150 -PAHSD------------------------------------------------------PVSA--VHFNRDGSLIVSSS  172 (247)
Q Consensus       150 -~~~~~------------------------------------------------------~i~~--~~~~~~~~~l~~~~  172 (247)
                       ..|..                                                      .+.-  .+++|-++.||.|.
T Consensus       247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence             00100                                                      1111  23455567789999


Q ss_pred             CCCeEEEEeCCCceeee--ee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         173 YDGLCRIWDTASGQCLK--TL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~--~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..|.+.+||++..+...  ++ .......|...+|+.||..|+....|++|.-||..
T Consensus       327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999866521  11 12335678899999999999999999999999854

>KOG1408|consensus

Probab=99.84  E-value=1.9e-19  Score=147.17  Aligned_cols=199  Identities=21%  Similarity=0.340  Sum_probs=155.5

Q ss_pred             EEEEeCCCeEEEEecCCCe---EE----------E------------------------EEecccCCeEEEEECCCCCEE
Q psy4393          42 LASSSADKLIKIWGAYDGK---FE----------K------------------------TISGHKLGISDVAWSSDSRLL   84 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~---~~----------~------------------------~~~~~~~~v~~~~~~~~~~~l   84 (247)
                      +.+|+.|++|++|+.....   ..          .                        ..-....++.+++.+|+|++|
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            7789999999999975411   00          0                        001134578999999999999


Q ss_pred             EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCCCe-EEEeecCC--------
Q psy4393          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRTGK-CLKTLPAH--------  152 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~--------  152 (247)
                      ++|..-|.+++|++...+....+.+|.+.|.|+.++.   ..++||+++.|+.|++||....- .+..+..|        
T Consensus       475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK  554 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK  554 (1080)
T ss_pred             cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence            9999999999999998888888999999999999975   45789999999999999985311 11111111        


Q ss_pred             -----------------------------------------CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         153 -----------------------------------------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       153 -----------------------------------------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                                                               ...+..|+..|+.+++++++.|..|+|||+.+++..+.+
T Consensus       555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F  634 (1080)
T KOG1408|consen  555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF  634 (1080)
T ss_pred             EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence                                                     123567888888899999999999999999999988877


Q ss_pred             ccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         192 IDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       192 ~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ...  +.+....+..+|.|-||++...|.++.++|...++..-.-.++++.
T Consensus       635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA  685 (1080)
T ss_pred             cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence            543  3345556889999999999999999999999888776655555553

>KOG1273|consensus

Probab=99.84  E-value=2.9e-19  Score=133.28  Aligned_cols=156  Identities=17%  Similarity=0.342  Sum_probs=132.5

Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA  151 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  151 (247)
                      ..++.|++-|.++++|+.||.+.+||+.+....+.+.+|.-+|.+++|+++|.++++++.|..+.+||+..|.+++.+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            67899999999999999999999999999888888899999999999999999999999999999999998876544321


Q ss_pred             ---------CCC-------------------------------------CeEEEEECCCCCEEEEecCCCeEEEEeCCCc
Q psy4393         152 ---------HSD-------------------------------------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (247)
Q Consensus       152 ---------~~~-------------------------------------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (247)
                               |+.                                     ...+..|++.|+++++|...|.+.++|..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence                     100                                     0112236677899999999999999999998


Q ss_pred             eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +++..+.......|..+.++-.|++|+..++|+.||.|+.++
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            887766544456788999999999999999999999999874

>KOG1063|consensus

Probab=99.84  E-value=2.4e-19  Score=145.70  Aligned_cols=215  Identities=23%  Similarity=0.418  Sum_probs=166.8

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe----EEEEEecccCCeEEEEECCCCCEEEEEcC
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      +..|.+.-.+.||.+.|+.++|+|.|++|++.+.|.+-|++-....+    ....-+.|...++++++-+..-.+++|.+
T Consensus       348 ~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  348 KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence            34566666678999999999999999999999999999998654211    11122345666888998886566888888


Q ss_pred             CCeEEEEECCC-------------------------------------------ceE-----------------------
Q psy4393          90 DKTLKIWELSS-------------------------------------------GKC-----------------------  103 (247)
Q Consensus        90 d~~i~v~d~~~-------------------------------------------~~~-----------------------  103 (247)
                      ...+++|+...                                           |..                       
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence            88888887421                                           000                       


Q ss_pred             ----------EEEEecCCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393         104 ----------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       104 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                                ++++.+|...|.+++.+|+++++|+++...     .|++|+..+...+..+..|.-.|+.++|+||+++|
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence                      011225667799999999999999998754     48999999888888899999999999999999999


Q ss_pred             EEecCCCeEEEEeCCCceee---eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         169 VSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      ++.+.|.++.+|........   ......|..-|..+.|+|++.++++++.|..|+||.....
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999986433211   1123455667889999999999999999999999987654

>KOG2919|consensus

Probab=99.83  E-value=6.6e-19  Score=131.74  Aligned_cols=206  Identities=20%  Similarity=0.406  Sum_probs=154.1

Q ss_pred             CCCeEEEEEC-------CCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-----CCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          27 TKAVSSVKFS-------PNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        27 ~~~v~~~~~s-------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      ...|..-+|-       |+..++++.+.+.-|++||..+++...++....     ....+++|+|||..|++| ....|+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence            3456666663       677788999999999999999999888776432     245789999999999876 567899


Q ss_pred             EEEC-CCceE--EEEE-----ecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393          95 IWEL-SSGKC--LKTL-----KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus        95 v~d~-~~~~~--~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      ++|+ +.|..  +...     .+..+.+.+++++|... .++.|+-..++-|+.-....++..+..|.+.|+.++|.++|
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG  262 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG  262 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence            9998 44431  1111     12356688899999654 78888888888888777778888888999999999999999


Q ss_pred             CEEEEecC-CCeEEEEeCCCcee-eeeeccCC--CCCeEEEEECCCCCEEEEEEcCCeEEEEECCC-cceEEE
Q psy4393         166 SLIVSSSY-DGLCRIWDTASGQC-LKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDSKV-VTPAII  233 (247)
Q Consensus       166 ~~l~~~~~-dg~i~v~d~~~~~~-~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~  233 (247)
                      +.|++|+. +-.|..||++.... +..+..+.  ...=......|++++|++|++||.|++||.+. +++..+
T Consensus       263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence            99999986 56899999987542 22222111  11122356689999999999999999999988 453333

>KOG0303|consensus

Probab=99.82  E-value=5.4e-19  Score=135.26  Aligned_cols=169  Identities=28%  Similarity=0.553  Sum_probs=139.1

Q ss_pred             EEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc-------eEEEEEecCCccEEEEEEcCC-CCEEEEeeCCCC
Q psy4393          64 TISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES  134 (247)
Q Consensus        64 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~  134 (247)
                      .+.+|..+|.+++|+| +.+.|++|++|.+|.+|++..+       +.+..+.+|...|..+.|+|. .+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4678999999999999 5677999999999999998653       346678899999999999995 478889999999


Q ss_pred             EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE
Q psy4393         135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       135 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  214 (247)
                      |.+||+.+++.+..+. |..-|.+|.|+.||.+|++++.|..|+|||.++++.+..-..+.+..-....|-.+|..+.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888877 999999999999999999999999999999999988776643433333445677888855555


Q ss_pred             E---cCCeEEEEECCCc-ceEEE
Q psy4393         215 T---LDNTLKLWDSKVV-TPAII  233 (247)
Q Consensus       215 ~---~dg~i~vwd~~~~-~~~~~  233 (247)
                      .   .+..+-+||.... .|+..
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~  257 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIAL  257 (472)
T ss_pred             cccccccceeccCcccccCccee
Confidence            3   4789999998765 35443

>KOG4328|consensus

Probab=99.82  E-value=6.1e-19  Score=137.13  Aligned_cols=216  Identities=19%  Similarity=0.319  Sum_probs=163.6

Q ss_pred             eEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      .-.+-+..|..+|.++.|+|. -..+++.+.||+++.-|.+.......+..  ....+.++.|+.+...++.+..-|...
T Consensus       225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~  304 (498)
T KOG4328|consen  225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN  304 (498)
T ss_pred             CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence            334555679999999999995 45788899999999999877654433332  344577788888878888888888999


Q ss_pred             EEECCCceE-EEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE----EEeecCCCCCeEEEEECCCCCEE
Q psy4393          95 IWELSSGKC-LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        95 v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      +||.+++.. ...+.-|...|..++++|.. .+++|++.|++.+|||+|.-..    +-....|..+|.++.|+|++-.|
T Consensus       305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  305 VIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL  384 (498)
T ss_pred             EEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence            999987653 45566677789999999955 5789999999999999985332    23345788899999999998889


Q ss_pred             EEecCCCeEEEEeCC----CceeeeeeccCCCC----CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         169 VSSSYDGLCRIWDTA----SGQCLKTLIDDDNP----PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~----~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ++.+.|..|+|||..    .-.....+...+..    ..-...|+|+..+++.|-.-..|-|+|.+.++-+..
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            999999999999984    22222222221111    122367999999999999999999999988774444

>KOG1007|consensus

Probab=99.82  E-value=2.5e-18  Score=126.89  Aligned_cols=205  Identities=26%  Similarity=0.398  Sum_probs=153.8

Q ss_pred             EEEEe-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE-EEEEe-----cccCCeEEEEECC--CCCEEEEEcCC
Q psy4393          20 KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GHKLGISDVAWSS--DSRLLVSGSDD   90 (247)
Q Consensus        20 ~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d   90 (247)
                      ...+. .+.+.|.|+.|.|++..+++.. |..|.+|+...+.. ...+.     .+....++-+|+|  +++.+++. .|
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d  192 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD  192 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC
Confidence            33443 5667999999999999998865 77899999876554 33322     2344567778998  67777666 57


Q ss_pred             CeEEEEECCCceEEEEE-ecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECCC-CC
Q psy4393          91 KTLKIWELSSGKCLKTL-KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRD-GS  166 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~  166 (247)
                      +++..||+++......+ .+|...+..+.|+|+.+ ++++++.||.|++||+|.. .+++.+..|...+.++.|+|. .+
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence            89999999987655444 46777899999999765 5788999999999999864 467888999999999999995 45


Q ss_pred             EEEEecCCCeEEEEeCCCce------------------------eeee----eccCCCCCeEEEEECCCCCEEE-EEEcC
Q psy4393         167 LIVSSSYDGLCRIWDTASGQ------------------------CLKT----LIDDDNPPVSFVKFSPNGKYIL-AATLD  217 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~------------------------~~~~----~~~~~~~~v~~~~~s~~~~~l~-~~~~d  217 (247)
                      ++++|+.|..|.+|....-.                        ++..    ....+...|.+++||.-..++. +-+.|
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            77899999999999764321                        0000    1233456789999998777765 55789


Q ss_pred             CeEEEEECC
Q psy4393         218 NTLKLWDSK  226 (247)
Q Consensus       218 g~i~vwd~~  226 (247)
                      |++.|=...
T Consensus       353 GRviIs~V~  361 (370)
T KOG1007|consen  353 GRVIISSVP  361 (370)
T ss_pred             ceEEeecCC
Confidence            999886544

>KOG0649|consensus

Probab=99.82  E-value=5.9e-18  Score=122.20  Aligned_cols=212  Identities=20%  Similarity=0.267  Sum_probs=154.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCC---------Ce-EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      .|.+-+++|.+++|++|+.+|.|.+..+..         ++ ......+|+.++..++|.  ..++++++ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            455668999999999999999999997642         11 122346799999999998  34566665 599999876


Q ss_pred             CCceE------EEEEe-------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393          99 SSGKC------LKTLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus        99 ~~~~~------~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      .....      +...+       .....|+++...|..+-+++++.|+.++-||+++|+..++++.|...+.++.--...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            53211      10111       112457889999988888888899999999999999999999999999999874445


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeeccCC---------CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE--E
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD---------NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII--C  234 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~  234 (247)
                      ..+++|++||++++||.++++....+....         ..-|.++  .-+..+|++|+ ...+.+|.++..++..+  +
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEEec
Confidence            568899999999999999998877653321         1223344  45567888876 46899999998765554  3


Q ss_pred             ccCCcccceeec
Q psy4393         235 STPLNLNYFYRN  246 (247)
Q Consensus       235 ~~~~~~~~~~~~  246 (247)
                      ..+.-...|+.|
T Consensus       246 pa~v~~v~F~~d  257 (325)
T KOG0649|consen  246 PARVHLVDFVDD  257 (325)
T ss_pred             ccceeEeeeecc
Confidence            444445555544

>KOG0321|consensus

Probab=99.82  E-value=1.1e-18  Score=140.86  Aligned_cols=196  Identities=23%  Similarity=0.387  Sum_probs=146.3

Q ss_pred             EEECCC--C-CEEEEEeCCCeEEEEecCCCeEE------EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          33 VKFSPN--G-EWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        33 ~~~s~~--~-~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      ..|++.  . ..|+.+.++|.|.++|.......      .....|...|.++.|.|....|++++.|.++++||++++..
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            566552  2 36788999999999997543322      33456889999999999777899999999999999999887


Q ss_pred             EEE--EecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeE---------------------------EEeecCCC
Q psy4393         104 LKT--LKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKC---------------------------LKTLPAHS  153 (247)
Q Consensus       104 ~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~~  153 (247)
                      ...  +.+|...+..++|.|. ...|++|+.||.+.|||++-...                           +...+++.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            765  7899999999999985 46789999999999999974320                           01112333


Q ss_pred             CCeEE---EEECCCCCEEEEecC-CCeEEEEeCCCceeeeeec--------cC--CCCCeEEEEECCCCCEEEEEEcCCe
Q psy4393         154 DPVSA---VHFNRDGSLIVSSSY-DGLCRIWDTASGQCLKTLI--------DD--DNPPVSFVKFSPNGKYILAATLDNT  219 (247)
Q Consensus       154 ~~i~~---~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~--------~~--~~~~v~~~~~s~~~~~l~~~~~dg~  219 (247)
                      ..|.+   +-+..|...||+++. |+.|+|||++..+......        .+  ....+.++..+..|.+|.+.+.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            33444   445567888888877 9999999999765432211        11  1234667888888999999989999


Q ss_pred             EEEEECCCc
Q psy4393         220 LKLWDSKVV  228 (247)
Q Consensus       220 i~vwd~~~~  228 (247)
                      |.+|++...
T Consensus       295 Iy~ynm~s~  303 (720)
T KOG0321|consen  295 IYFYNMRSL  303 (720)
T ss_pred             EEEEecccc
Confidence            999998754

>KOG1445|consensus

Probab=99.82  E-value=4.3e-19  Score=143.43  Aligned_cols=210  Identities=19%  Similarity=0.355  Sum_probs=157.7

Q ss_pred             CCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEE
Q psy4393          27 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        27 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d   97 (247)
                      ...|+.+.|.| |.+.||.++.||.|++|.+..+       .....+..|...|.++.|+| ..+.|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45689999999 7789999999999999997543       23456788999999999999 467789999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-EEeecCC-CCCeEEEEECCCCCEEEEecCCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAH-SDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +.+.+....+.+|.+.|..++|+|+|+.+++.+.||.+++|+.++++. +.+-+.. ...-..+.|.=+|+++++.+.|.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            999988888999999999999999999999999999999999987653 2222211 11223466777899888877664


Q ss_pred             ----eEEEEeCCCce--eeeeeccCCCCCeEEEEECCCCCE-EEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         176 ----LCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       176 ----~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                          ++.+||..+..  .+.+........+..-.+++|... +++|-.|..|.+|+.-...|.+..-.
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~  854 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA  854 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence                68889876532  233222222222222345666654 45666799999999877777655333

>KOG1009|consensus

Probab=99.82  E-value=2.5e-18  Score=131.92  Aligned_cols=213  Identities=29%  Similarity=0.467  Sum_probs=162.0

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCC---------eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          27 TKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        27 ~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..+|.++.|.++.. .+++|+.|..|++|.+...         +....+..|...|+.+.|+|+|+.+++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999999776 9999999999999986432         2334577899999999999999999999999999999


Q ss_pred             ECC--------C--------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEE
Q psy4393          97 ELS--------S--------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH  160 (247)
Q Consensus        97 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~  160 (247)
                      ...        +        -...+.+.+|...+..++|+|++.++++++-|..+++||+..|+....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            765        2        123345678888999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEecCCCeEEEEeCCCceeeeee--------------------ccCCC--CCeEEEEECCCCCEEEEEEc--
Q psy4393         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--------------------IDDDN--PPVSFVKFSPNGKYILAATL--  216 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------------------~~~~~--~~v~~~~~s~~~~~l~~~~~--  216 (247)
                      |.|-++++++-+.|...+.+.+...+..+..                    +..+.  .-...++|+|||.+|++...  
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~  252 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF  252 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence            9999999998888886666665433221111                    01110  11245789999999987541  


Q ss_pred             --CC-----eEEEEECCCc-ceEEEEccCCc
Q psy4393         217 --DN-----TLKLWDSKVV-TPAIICSTPLN  239 (247)
Q Consensus       217 --dg-----~i~vwd~~~~-~~~~~~~~~~~  239 (247)
                        ++     ..++|+.+.. .|..-+..+..
T Consensus       253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k  283 (434)
T KOG1009|consen  253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKK  283 (434)
T ss_pred             eeCCceeeceeEeeccccccCceeecCCCCc
Confidence              23     3466766543 34444444333

>KOG1188|consensus

Probab=99.81  E-value=3.4e-18  Score=128.63  Aligned_cols=198  Identities=22%  Similarity=0.388  Sum_probs=152.8

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEEECCCceEEEE--EecCC-ccE
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKT--LKGHS-NYV  114 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~-~~v  114 (247)
                      ..+|++-.+|.|++||..+++....+++++..+..+.|..  ....+.+++.||+|++||++.......  ...+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999998899999976  455789999999999999987654433  33333 345


Q ss_pred             EEEEEcCCCCEEEEeeC----CCCEEEEECCCCeE-EEe-ecCCCCCeEEEEECCC-CCEEEEecCCCeEEEEeCCCcee
Q psy4393         115 FCCNFNPQSNLIVSGSF----DESVRIWDVRTGKC-LKT-LPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~-~~~-~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      .+++.+..++++++|..    +-.+.+||.|..+. +.. ...|...|++++|+|+ ..+|++|+.||.+.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            56666667888888864    45699999998765 433 4578899999999995 46899999999999999875432


Q ss_pred             eeeec--cCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         188 LKTLI--DDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       188 ~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .-.+.  ......|..+.|..++ +.+.+-+......+|+.+.+.+..-+..|
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP  253 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence            22221  1345678999998876 45888899999999999988765544443

>KOG1272|consensus

Probab=99.81  E-value=1.1e-19  Score=141.68  Aligned_cols=206  Identities=20%  Similarity=0.305  Sum_probs=176.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      -+-..+.++.+|++|+.|+..|.|--+|..+++....+.. ...|.++.|-.+.++++++ ....+++||- .|..++.+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence            3456789999999999999999999999999888777764 3458889999888877766 5678999995 57777878


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      +.+. .+..+.|-|..-+|++++..|.++..|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|.....++
T Consensus       207 k~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            7654 578899999999999999999999999999999999988889999999999999999999999999999988877


Q ss_pred             eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      +..+.. +.++|..++++++|+|+++++.|..++|||++.-..+.++..|+
T Consensus       286 LvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~  335 (545)
T KOG1272|consen  286 LVKILC-HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH  335 (545)
T ss_pred             HHHHHh-cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC
Confidence            766543 45789999999999999999999999999999876655655543

>KOG0321|consensus

Probab=99.81  E-value=2.2e-18  Score=138.99  Aligned_cols=205  Identities=18%  Similarity=0.339  Sum_probs=148.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE--EecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .|...|..+.|.|....|++++.|.+++.||+...+....  +.+|...|.+++|.|.. ..+++|+.||.+.|||++-.
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            6899999999999666788999999999999988877655  88999999999999965 56889999999999997532


Q ss_pred             e--------------------E-------EEEEecCCccEEE---EEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEe--
Q psy4393         102 K--------------------C-------LKTLKGHSNYVFC---CNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKT--  148 (247)
Q Consensus       102 ~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~--  148 (247)
                      .                    .       .+..+++...+..   +.+..|...||+++. |+.|+|||++.......  
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e  257 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE  257 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence            1                    0       0111222333333   445567778888777 99999999987543221  


Q ss_pred             ------ecCC---CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee--eeeccCCCCC-eEEEEECCCCCEEEEEEc
Q psy4393         149 ------LPAH---SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPP-VSFVKFSPNGKYILAATL  216 (247)
Q Consensus       149 ------~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~-v~~~~~s~~~~~l~~~~~  216 (247)
                            +..+   ...+.++..+..|.+|++.+.|+.|.+||+.+...-  ..+....... ...-..+||+.+|++|+.
T Consensus       258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs  337 (720)
T KOG0321|consen  258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS  337 (720)
T ss_pred             CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence                  1122   234677888888898888888999999999865322  2111111111 112346899999999999


Q ss_pred             CCeEEEEECCCcc
Q psy4393         217 DNTLKLWDSKVVT  229 (247)
Q Consensus       217 dg~i~vwd~~~~~  229 (247)
                      |....+|.++...
T Consensus       338 d~~ayiw~vs~~e  350 (720)
T KOG0321|consen  338 DEQAYIWVVSSPE  350 (720)
T ss_pred             CcceeeeeecCcc
Confidence            9999999987653

>KOG0322|consensus

Probab=99.81  E-value=1.3e-18  Score=126.81  Aligned_cols=203  Identities=24%  Similarity=0.375  Sum_probs=147.8

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      .|.+..|.+.|+++.|..+++ |++|..-|.|++|+..+.+....+. .+...|+.+...|+ ..+.+-+.|+.+.+|++
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI   84 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence            455669999999999988766 7889999999999998877776666 34556888887786 55778889999999987


Q ss_pred             CCceEEEE--E------------e---------------------------------------cCCccEEEEEEcCC---
Q psy4393          99 SSGKCLKT--L------------K---------------------------------------GHSNYVFCCNFNPQ---  122 (247)
Q Consensus        99 ~~~~~~~~--~------------~---------------------------------------~~~~~v~~~~~~~~---  122 (247)
                      .-+..+..  +            .                                       ...+.+.+..+..+   
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            64321110  0            0                                       00112233332221   


Q ss_pred             CCEEEEeeCCCCEEEEECCCCeEEEe----------ecCCCC--------------------------------------
Q psy4393         123 SNLIVSGSFDESVRIWDVRTGKCLKT----------LPAHSD--------------------------------------  154 (247)
Q Consensus       123 ~~~l~~~~~d~~i~v~d~~~~~~~~~----------~~~~~~--------------------------------------  154 (247)
                      .-++++|.++|++.+||+.++..+-.          ...|..                                      
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence            12567788999999999988632111          111111                                      


Q ss_pred             --------CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         155 --------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       155 --------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                              .+..+.+-||++.+|++++|+.|++|.-++...+..+..+ ...|++++|+|+...+|+++.|++|.+|+.
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                    2344566789999999999999999999999888776544 478999999999999999999999999985

>KOG1539|consensus

Probab=99.81  E-value=6.4e-17  Score=134.24  Aligned_cols=206  Identities=20%  Similarity=0.315  Sum_probs=165.0

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEE----EEE-ecccCCeEEEEECCCC--CEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFE----KTI-SGHKLGISDVAWSSDS--RLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~-~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      +-|++++++..++.+.+|+....+..    ..+ ......|+++ ++|+.  +.++.|+..|.+.+|++++++.+.++++
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~  200 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE  200 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecc
Confidence            45788889999999999998764111    112 2222227776 56653  5689999999999999999999999999


Q ss_pred             CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceee
Q psy4393         110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      ..+.|.++.-+|--..++.|..+|.|.+++++.++.+..++...+.|+++.|.-||. ++++|+..|.+.+||+...+..
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI  280 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence            999999999999999999999999999999999999999987679999999999987 5667777799999999988877


Q ss_pred             eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC--Ccce--EEEEccCCcccce
Q psy4393         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK--VVTP--AIICSTPLNLNYF  243 (247)
Q Consensus       189 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~--~~~~~~~~~~~~~  243 (247)
                      ......+.+.+....|-|....+++++.|+.+++|=.+  ++.|  +....+++.|-..
T Consensus       281 ~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~  339 (910)
T KOG1539|consen  281 NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC  339 (910)
T ss_pred             eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence            76666676778889999999999999999988887444  4433  3344455554433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=5.1e-16  Score=126.52  Aligned_cols=204  Identities=42%  Similarity=0.726  Sum_probs=167.4

Q ss_pred             CCeEEEEE-CCCCC-EEEEEe-CCCeEEEEecCC-CeEEEEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCCce
Q psy4393          28 KAVSSVKF-SPNGE-WLASSS-ADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGK  102 (247)
Q Consensus        28 ~~v~~~~~-s~~~~-~l~~~~-~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~  102 (247)
                      ..+..+.+ ++++. .++..+ .|+.+.+|+... ......+..|...+..+.|+|++..++.++. ++.+++|+...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK  189 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence            36777777 88887 444434 489999999987 6777888889999999999999998888885 9999999999888


Q ss_pred             EEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEE-eecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ....+..|...+.++.|+|++. .+++++.|+.+++||...+..+. .+..|.... ...|+|++..+++++.++.+++|
T Consensus       190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLW  268 (466)
T ss_pred             eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEe
Confidence            8888888899999999999988 55555899999999998777777 577776664 33899999888899999999999


Q ss_pred             eCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         181 DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       181 d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      +...... .... ..+...+..+.|+|++..+++++.|+.+++||.+.......
T Consensus       269 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         269 DLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             eecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            9987654 3333 44567889999999999999899999999998877654433

>KOG0307|consensus

Probab=99.80  E-value=3.1e-19  Score=152.15  Aligned_cols=208  Identities=23%  Similarity=0.360  Sum_probs=161.7

Q ss_pred             EEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEE--ecccCCeEEEEECCCCC-EEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSR-LLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~   96 (247)
                      .+...|++.|..+.|++... +||+|+.||.|.|||+.+.+.....  ......|.+++|+..-+ .|++++.+|.+.+|
T Consensus       110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW  189 (1049)
T KOG0307|consen  110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW  189 (1049)
T ss_pred             hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence            34567999999999999655 9999999999999998764332222  11345699999987544 56788889999999


Q ss_pred             ECCCceEEEEEecCCc--cEEEEEEcCCC-CEEEEeeCCC---CEEEEECCCCe-EEEeecCCCCCeEEEEECCCC-CEE
Q psy4393          97 ELSSGKCLKTLKGHSN--YVFCCNFNPQS-NLIVSGSFDE---SVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDG-SLI  168 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l  168 (247)
                      |++..+.+..+..+..  .+..+.|+|+. ..+++++.|.   .|.+||+|... +++.+..|...|.+|.|++.+ .+|
T Consensus       190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~ll  269 (1049)
T KOG0307|consen  190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLL  269 (1049)
T ss_pred             cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhh
Confidence            9998876666654443  36678999976 3455555544   49999998643 567778999999999999966 788


Q ss_pred             EEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcc
Q psy4393         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ++++.|+.+..|+..+++.+..+.. ...-+..+.|.|... .+++++.||.|.||......
T Consensus       270 lSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999999999999998877654 233467789999877 77888999999999876554

>KOG1523|consensus

Probab=99.80  E-value=1.9e-17  Score=123.70  Aligned_cols=203  Identities=18%  Similarity=0.282  Sum_probs=161.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC---eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC-CCc
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL-SSG  101 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~  101 (247)
                      -.++|+|.+|++|+..+|.+..+..|.||.....   +....++.|...|+.+.|.|..+.|++++.|..-++|.. +.+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            4689999999999999999999999999987654   355678889999999999999999999999999999998 443


Q ss_pred             e--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE----eecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         102 K--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK----TLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       102 ~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +  ....+..+...+.++.|+|.++.|++|+..+.|.||=.+....-.    .-+.+...|+++.|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            3  333445566778999999999999999999999988776543221    1234567799999999999999999999


Q ss_pred             eEEEEeCCCce------------------eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         176 LCRIWDTASGQ------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       176 ~i~v~d~~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ..++|...-..                  ....+ ....+-+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99998643211                  00000 1223457889999999999999999999999976654

>KOG1009|consensus

Probab=99.80  E-value=1.4e-17  Score=127.98  Aligned_cols=121  Identities=35%  Similarity=0.610  Sum_probs=102.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--------C--------CeEEEEEecccCCeEEEEECCCCCEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--------D--------GKFEKTISGHKLGISDVAWSSDSRLL   84 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l   84 (247)
                      -.+..|...|+++.|+|+|++||+|+.+|.+.+|-..        +        ......+.+|...+.+++|+|++.++
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            3467899999999999999999999999999999654        2        11234466788889999999999999


Q ss_pred             EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC
Q psy4393          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                      ++++-|..+++||+..|+....+..|...+..++|.|-++++++-+.|+..+.+.+.
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            999999999999999999988888888888888898888888877777766655554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=4e-17  Score=134.43  Aligned_cols=194  Identities=19%  Similarity=0.172  Sum_probs=133.8

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEE--E
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKI--W   96 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v--~   96 (247)
                      +..|...+.+++|+|||+.|+.++.+   ..|++||..+++.... .........++|+|||+.|+.+. .+|.+.+  |
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            44677789999999999999876543   3699999977654322 22223345689999999888764 5776554  5


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      |+.++.. ..+..+...+....|+|+++.++..+ .++..++|++.... ....+ .+..  ....|+|+|+.++..+.+
T Consensus       278 d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        278 GANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             ECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence            6665553 44555555677889999999877654 56778888764322 22222 2332  456899999999888766


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      + +.+||+.+++... +...  .....+.|+|||++|+.++.+|.+.+|+.
T Consensus       354 ~-i~~~Dl~~g~~~~-lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        354 N-VVKQDLTSGSTEV-LSST--FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             C-EEEEECCCCCeEE-ecCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            5 5569998876432 2111  12245789999999999999998888875

>KOG4378|consensus

Probab=99.79  E-value=1.5e-17  Score=130.93  Aligned_cols=186  Identities=23%  Similarity=0.353  Sum_probs=151.6

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCE-EEEEcCCCeEEEEECC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRL-LVSGSDDKTLKIWELS   99 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~   99 (247)
                      .+++|...|+++.+.-...+||+++..|.|.+....++.....+....+ .|.-+.++|..+. |.+++.+|.|.+||+.
T Consensus       116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ  195 (673)
T ss_pred             hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence            4578999999999999999999999999999999887776666654433 3667899997665 5678999999999997


Q ss_pred             CceEEEE-EecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         100 SGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       100 ~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ....... ...|..+...++|+|.. .+|++.+-|..|.+||.+.......+. ...|.+.++|.++|.+|++|...|.+
T Consensus       196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceE
Confidence            6554433 35688888899999955 567888999999999999776655554 35688999999999999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~  208 (247)
                      ..||++..+........+...|++++|-|..
T Consensus       275 i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  275 IAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999998765555555666779999998864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=9.4e-16  Score=124.93  Aligned_cols=208  Identities=40%  Similarity=0.771  Sum_probs=168.1

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEeccc-CCeEEEEE-CCCCC-EEEEEcC-CCeEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHK-LGISDVAW-SSDSR-LLVSGSD-DKTLKIW   96 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~v~   96 (247)
                      ....|...+.++.|.+.+..++.++.++.+.+|+..... ....+.... ..+..+.+ .+++. .++..+. ++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            345789999999999999999999899999999988775 555555533 35677766 78877 4555444 8999999


Q ss_pred             ECCC-ceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEEEecC
Q psy4393          97 ELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSY  173 (247)
Q Consensus        97 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  173 (247)
                      +... ......+..|...+..+.++|++..++.++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9987 6777788889999999999999998888875 99999999998888888888999999999999998 5555589


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      |+.+.+||...+.........+.... ...|+|++.++++++.|+.+++||.+....
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            99999999886666553233333332 227999999999999999999999987664

>KOG0268|consensus

Probab=99.79  E-value=1.1e-18  Score=132.24  Aligned_cols=168  Identities=25%  Similarity=0.438  Sum_probs=132.1

Q ss_pred             eEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEE
Q psy4393          60 KFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  138 (247)
Q Consensus        60 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  138 (247)
                      ..+..+.+|..+|.+++=+|.. ..+++|+.||.|++||+.+..+...+++|.+.|..+++..  ..+++++.|.+|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            3455678899999999999976 6799999999999999999999999999999999998876  567777788877777


Q ss_pred             ECC--------------------------------------CCeEEEeecCCCCCeEEEEECCCCC-EEEEecCCCeEEE
Q psy4393         139 DVR--------------------------------------TGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRI  179 (247)
Q Consensus       139 d~~--------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v  179 (247)
                      -+.                                      ...++..+......+.++.|+|... .|++|+.|+.|.+
T Consensus       135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence            532                                      2223334444445678888998665 5677779999999


Q ss_pred             EeCCCceeeeeec-----------------------------------------cCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         180 WDTASGQCLKTLI-----------------------------------------DDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       180 ~d~~~~~~~~~~~-----------------------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                      ||++.+++++.+.                                         ..+...|..++|||.|+-+++|+.|.
T Consensus       215 yD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  215 YDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             EecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence            9999876654321                                         12334678899999999999999999


Q ss_pred             eEEEEECCCcc
Q psy4393         219 TLKLWDSKVVT  229 (247)
Q Consensus       219 ~i~vwd~~~~~  229 (247)
                      +|+||..+.+.
T Consensus       295 sIRIf~~~~~~  305 (433)
T KOG0268|consen  295 SIRIFPVNHGH  305 (433)
T ss_pred             eEEEeecCCCc
Confidence            99999987654

>KOG1445|consensus

Probab=99.79  E-value=7e-18  Score=136.54  Aligned_cols=212  Identities=22%  Similarity=0.338  Sum_probs=164.5

Q ss_pred             EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEE------EEEecccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          22 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      .+.+|...|+.+.|+| +..+||+|+.|..|+||.+..+...      ..+.+....+.++.|+|...-|+..+..|.++
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~  153 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY  153 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence            4568999999999999 5668899999999999998744322      12334455688999999776677777889999


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-CeEEEeecCCCCC-eEEEEECCCCCEEEEec
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~  172 (247)
                      +||+.+++....+.+|.+.|.++.|+.||.++++.+.|..|++||.+. ++.++....|.+. -..+.|.-+-..|++.+
T Consensus       154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTG  233 (1012)
T KOG1445|consen  154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTG  233 (1012)
T ss_pred             EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcc
Confidence            999999999999999999999999999999999999999999999985 4556666677542 23456766555676666


Q ss_pred             CC----CeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393         173 YD----GLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       173 ~d----g~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  233 (247)
                      .+    ..+++||.+.. ...+++.......+..-.|+||.++|+.++ .++++..+++.+.+|.++
T Consensus       234 F~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs  300 (1012)
T KOG1445|consen  234 FTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLS  300 (1012)
T ss_pred             cchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchh
Confidence            54    47899998763 344454444455566667999999887665 578999999998888765

>KOG2110|consensus

Probab=99.78  E-value=5.7e-16  Score=117.93  Aligned_cols=193  Identities=20%  Similarity=0.286  Sum_probs=146.2

Q ss_pred             eEEEEECCCCCEEEEEeCC--CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          30 VSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      |..+-|+  ..++|..+.+  ..+++++...+...+.+. ...+|.++.++.  ++|+++-++. |++||+++-+.++++
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhh
Confidence            4444454  3455554443  347777776665555554 345687887764  4566665554 999999998888776


Q ss_pred             ecC---CccEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe-EEEEe
Q psy4393         108 KGH---SNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWD  181 (247)
Q Consensus       108 ~~~---~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d  181 (247)
                      ..-   ...+.++..++.+.+++.-+  ..|.|.+||+.+-+.+..+.+|.+++.+++|+++|.+||+++..|+ |+||.
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~  202 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS  202 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence            533   33455566666667888753  4688999999999999999999999999999999999999999995 79999


Q ss_pred             CCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         182 TASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       182 ~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.+++.+..+..+- ...|..++|+||+++|++.+..++|+||.+...
T Consensus       203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            99999887775443 345788999999999999999999999987654

>KOG3881|consensus

Probab=99.78  E-value=1.9e-16  Score=121.31  Aligned_cols=200  Identities=17%  Similarity=0.275  Sum_probs=154.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe----EEEEEecccCCeEEEEECCCCCE-EEEEcCC--CeEEEEECC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSRL-LVSGSDD--KTLKIWELS   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--~~i~v~d~~   99 (247)
                      +++|..++..  ...|++|-.+|.+++|....+.    ....+.. ..++..+.-++.... +++|+..  ..+.+||++
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            4555555543  3357788899999999876322    2223332 245666666665444 5568887  789999999


Q ss_pred             CceEEEEEecCC---------ccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCE
Q psy4393         100 SGKCLKTLKGHS---------NYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus       100 ~~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      +.+.+..-+.-.         -.+..+.|-+.  ...|++++.-+.+++||.+.++ ++..+...+.+++++...|++++
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence            875444333211         12445678777  8899999999999999998664 67777777889999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +++|...|.+..||++.++.....+....+.+..+..+|.+++|++++.|..|||+|.++..
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            99999999999999999998877677777889999999999999999999999999998843

>KOG1007|consensus

Probab=99.77  E-value=2.9e-17  Score=121.29  Aligned_cols=203  Identities=23%  Similarity=0.357  Sum_probs=146.4

Q ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCC-------CeEEEEecCCCe---------EEEEEe-cccCCeEEEEECCCCCEE
Q psy4393          23 LAGHTKAVSSVKFSPNGE-WLASSSAD-------KLIKIWGAYDGK---------FEKTIS-GHKLGISDVAWSSDSRLL   84 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~-~l~~~~~d-------g~v~iw~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l   84 (247)
                      +.-|.+.|..++-+|-.+ .|+++..+       -...||.+....         .+..+. .+-+.+.++.|.|++..+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            334678999999999555 55555432       246789875422         112222 344579999999999998


Q ss_pred             EEEcCCCeEEEEECCCceE-EEEEe-----cCCccEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEee-cCCCCC
Q psy4393          85 VSGSDDKTLKIWELSSGKC-LKTLK-----GHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDP  155 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~  155 (247)
                      ++-. +..|.+|++..+.. +..+.     ++.....+-.|+|  +++.+++. .|+++..||+|+......+ .+|...
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~  216 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR  216 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence            8775 77899999987654 33332     1233455667887  67777664 5889999999987655444 578888


Q ss_pred             eEEEEECCCCC-EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC-CCEEEEEEcCCeEEEEECCC
Q psy4393         156 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       156 i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +..+.|+|+.+ +|++|+.||.|++||.+..+....-..++.--+.++.|+|. .+++++++.|..|.+|....
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            99999999876 67889999999999999766443334455667889999985 46777899999999998654

>KOG1034|consensus

Probab=99.77  E-value=1.4e-16  Score=119.59  Aligned_cols=169  Identities=26%  Similarity=0.512  Sum_probs=132.8

Q ss_pred             CCCceEEEEE-ecCCCCeEEEEECC----CC-CEEEEEeCCCeEEEEecCCCe---EEEEEe--cccCCeEEEEECCC--
Q psy4393          14 KPNYVLKFTL-AGHTKAVSSVKFSP----NG-EWLASSSADKLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSD--   80 (247)
Q Consensus        14 ~~~~~~~~~~-~~h~~~v~~~~~s~----~~-~~l~~~~~dg~v~iw~~~~~~---~~~~~~--~~~~~v~~~~~~~~--   80 (247)
                      ++.|...-.+ .+|..+|..++|.+    +. ..+++++ ...+.+|......   ..+...  .++.....++|+-+  
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            4445544444 36889999999985    12 2455554 3467888764322   222222  24555777888754  


Q ss_pred             --CCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee---cCCCC
Q psy4393          81 --SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL---PAHSD  154 (247)
Q Consensus        81 --~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~  154 (247)
                        .-++++++.-|.|++.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++++..++..+   ..|.+
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence              3368888899999999999999999999999999999999965 68899999999999999999998886   47888


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      .|.++.|+++|.++++++.|-++.+|++.
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            99999999999999999999999999987

>KOG0644|consensus

Probab=99.77  E-value=7.5e-19  Score=145.70  Aligned_cols=202  Identities=31%  Similarity=0.516  Sum_probs=165.1

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      +-+|...|+|++|...|.++++|+.|..++||.+++..+.....+|.+.+++++.+....++++++.|..|++|.+.++.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            34799999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC----------------------------------------
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----------------------------------------  142 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------------------------------------  142 (247)
                      .+..+++|.+.|.+++|+|-.    +.+.||++++||.+-                                        
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            999999999999999999953    667788888888761                                        


Q ss_pred             -------------------------------------------CeEEEeecCCCCCeEEEEECCCCC-EEEEecCCCeEE
Q psy4393         143 -------------------------------------------GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR  178 (247)
Q Consensus       143 -------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  178 (247)
                                                                 |........|...+..+.++|-+. ...+++.||...
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~  421 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI  421 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE
Confidence                                                       000011112334455666777443 456788999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      |||+-.+..++.+...+ ..+...+||+||+.++....-|.+.|...-..+
T Consensus       422 iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  422 IWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            99999888777776553 455667899999999999888999998765443

>KOG1310|consensus

Probab=99.77  E-value=1.3e-17  Score=132.85  Aligned_cols=221  Identities=23%  Similarity=0.390  Sum_probs=164.3

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-ecccCCeEEEEECC--CCCEEEEEcCCCeE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSRLLVSGSDDKTL   93 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i   93 (247)
                      ..+...+.||++=|.++.|+.+|.+|++|+.|-.+.|||....+....+ .+|...|.++.|-|  +.+.+++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            3455677899999999999999999999999999999999877777665 57888899999998  45678999999999


Q ss_pred             EEEECCCce----------EEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE-EEee---------cCC
Q psy4393          94 KIWELSSGK----------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC-LKTL---------PAH  152 (247)
Q Consensus        94 ~v~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~-~~~~---------~~~  152 (247)
                      +++|+...+          .......|...|..++-.|++ +.+.++++||.++-+|++.... ....         ...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            999997421          223344566677777888877 7899999999999999986321 1111         011


Q ss_pred             CCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCc--------e----------eeeeeccCC-----------CCCeEEE
Q psy4393         153 SDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASG--------Q----------CLKTLIDDD-----------NPPVSFV  202 (247)
Q Consensus       153 ~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~--------~----------~~~~~~~~~-----------~~~v~~~  202 (247)
                      --...|+.++|.. .+|++|+.|-..++||.+..        .          ++..+...+           ....+.+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            1235688899865 47899999999999994321        1          111111111           0125678


Q ss_pred             EECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         203 KFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       203 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .|+|+|.-|+..-..-.|.++|+...++..-+..|
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence            99999988887766679999999988877666666

>KOG2321|consensus

Probab=99.77  E-value=1e-16  Score=128.32  Aligned_cols=220  Identities=21%  Similarity=0.315  Sum_probs=162.5

Q ss_pred             cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEE----------------------------Eecc-------
Q psy4393          25 GHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKT----------------------------ISGH-------   68 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~----------------------------~~~~-------   68 (247)
                      +|...-+.+..+|||+++ |+|...-.|++||+.+-.....                            +.-|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            466777889999999986 4566778999999754322110                            0000       


Q ss_pred             cC----CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe
Q psy4393          69 KL----GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (247)
Q Consensus        69 ~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (247)
                      ..    .-.+++++.-..-|+.++....|+-++++.|..+..+....+.++++..++-..++++|+.+|.+..||.++..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            00    01223333222234445455567778999999888888777889999999999999999999999999999876


Q ss_pred             EEEeec------CCCC-----CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC--EE
Q psy4393         145 CLKTLP------AHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK--YI  211 (247)
Q Consensus       145 ~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l  211 (247)
                      .+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.+||++..+++..--.....+|..+.|.+.++  .|
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            544332      2333     3899999999999999999999999999998877655555667899999977633  34


Q ss_pred             EEEEcCCeEEEEECCCcceEEEEccCCcccceee
Q psy4393         212 LAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYR  245 (247)
Q Consensus       212 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  245 (247)
                      ++.. ...++|||-.++++...+....+.|-||.
T Consensus       289 ~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~  321 (703)
T KOG2321|consen  289 VSMD-KRILKIWDECTGKPMASIEPTSDLNDFCF  321 (703)
T ss_pred             Eecc-hHHhhhcccccCCceeeccccCCcCceee
Confidence            4432 46899999999999998888888888874

>KOG2919|consensus

Probab=99.77  E-value=3.6e-17  Score=122.56  Aligned_cols=186  Identities=24%  Similarity=0.377  Sum_probs=138.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEE---EE----ecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCC
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEK---TI----SGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~---~~----~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~  100 (247)
                      -.+++|+|||+.|++| ....|+++|.. .++.-.   .+    .+..+-+.+++|+|.. ..++.++-...+-||.-..
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            3479999999999875 56799999984 332211   11    1224458889999955 4788888888999998888


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCe-EEEeecCCCC---CeEEEEECCCCCEEEEecCCC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGK-CLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +.++..+.+|.+.|..++|.++|+.+++|.. +..|-.||+|... ++..+..|.+   .-.-....|++++|++|+.+|
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            8888888899999999999999999999864 6789999998643 4444544433   112245578999999999999


Q ss_pred             eEEEEeCCC-ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         176 LCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       176 ~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                      .|++||+.. +.... ........++.++++|-=..+++++..
T Consensus       320 ~V~vwdlk~~gn~~s-v~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVS-VTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cEEEEecCCCCCccc-ccccccccccceecCcccceeeeccCc
Confidence            999999987 43232 233445567889999987777777644

>KOG0650|consensus

Probab=99.76  E-value=2.1e-17  Score=132.67  Aligned_cols=198  Identities=23%  Similarity=0.377  Sum_probs=162.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .|...|..+.|+..|.+|++...+   ..|.|+++.....+..+....+.+.++.|+|..-++++++. ..|++||+..+
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq  597 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ  597 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH
Confidence            688999999999999999986543   46888888777666666666777999999999888887765 57999999988


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ..++.+......+..++.+|.|.-++.|+.|+.+..||+.-+ ++.+.+..|...+++++|++.-.++++|+.||.+.||
T Consensus       598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            777777777788999999999999999999999999999754 4667788899999999999999999999999999888


Q ss_pred             eCC------Cce---eeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         181 DTA------SGQ---CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       181 d~~------~~~---~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      ...      .+.   +++.+..+   ....|..+.|+|...+|++++.||+|++|
T Consensus       678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            432      111   12222211   23457778899999999999999999998

>KOG0649|consensus

Probab=99.76  E-value=1.8e-15  Score=109.46  Aligned_cols=198  Identities=17%  Similarity=0.272  Sum_probs=143.4

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE------EEEE-------ecccCCeEEEEECCCCCEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------EKTI-------SGHKLGISDVAWSSDSRLLV   85 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~------~~~~-------~~~~~~v~~~~~~~~~~~l~   85 (247)
                      ..+...+|.++|..++|.  ..+|++|+ ||.|+-|.-.....      ...+       ...-..|+++...|..+-++
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            345557999999999998  45566654 69999886422110      0111       01123488899999888788


Q ss_pred             EEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC----------C
Q psy4393          86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD----------P  155 (247)
Q Consensus        86 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~  155 (247)
                      .++.|+.++-||+++|+..+.+++|.+.+.++.--.....+++|++||++++||++++++++.+.....          .
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w  210 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW  210 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence            888999999999999999999999999999988755566799999999999999999998877643321          2


Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |-+  ..-+..+|++|+ ...+.+|+++..++...+..  ..++..+.|..|  .++++++.+.|.-|...
T Consensus       211 iga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  211 IGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             eEE--EeccCceEEecC-CCceeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec
Confidence            333  344556776654 56789999999887766633  345666777653  57777766777777654

>KOG0642|consensus

Probab=99.76  E-value=9.7e-17  Score=127.96  Aligned_cols=174  Identities=27%  Similarity=0.421  Sum_probs=143.5

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC------CC----eEEEEEecccCCeEEEEECCCCCE
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY------DG----KFEKTISGHKLGISDVAWSSDSRL   83 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~------~~----~~~~~~~~~~~~v~~~~~~~~~~~   83 (247)
                      .......+++.+|.++|.|++..++++.+++|+.||.|+.|++.      +.    .....+.||...+..+++++...+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~  410 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR  410 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence            33455678899999999999999999999999999999999542      11    123457789999999999999999


Q ss_pred             EEEEcCCCeEEEEECCCceEEEEEe---------------------------------------------c-------CC
Q psy4393          84 LVSGSDDKTLKIWELSSGKCLKTLK---------------------------------------------G-------HS  111 (247)
Q Consensus        84 l~~~~~d~~i~v~d~~~~~~~~~~~---------------------------------------------~-------~~  111 (247)
                      |++++.||++++|+...... ..+.                                             .       ..
T Consensus       411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY  489 (577)
T ss_pred             eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence            99999999999998754322 0000                                             0       01


Q ss_pred             ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee
Q psy4393         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      ..+..+.++|...+.+++..|+.|+++|..++..+....+|...++++++.|+|.+|++++.|+.+++|.+....+.
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            22455677888889999999999999999999999999999999999999999999999999999999988765544

>KOG1538|consensus

Probab=99.75  E-value=6.1e-16  Score=126.17  Aligned_cols=205  Identities=21%  Similarity=0.358  Sum_probs=151.8

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE--------EE-E-------------------------
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------EK-T-------------------------   64 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~--------~~-~-------------------------   64 (247)
                      +--++++|...|.+++|+.||+++|+|+.|..|.+|+..-...        .+ .                         
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            3457789999999999999999999999999999997532110        00 0                         


Q ss_pred             -Eec--ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe---cCCccEEEEEEcCCC-----CEEEEeeCCC
Q psy4393          65 -ISG--HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---GHSNYVFCCNFNPQS-----NLIVSGSFDE  133 (247)
Q Consensus        65 -~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~  133 (247)
                       +..  ...++.+++|..||++++.|-.+|+|.+-+.. ++....+.   +..++|++++|+|..     ..++...+..
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q  203 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ  203 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence             000  12357789999999999999999999987643 43333333   356789999999853     4678888888


Q ss_pred             CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       134 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      ++.++.+. |+.+..-+.-.-...|+.+-++|.+++.|+.|+.+++|.- .|-.+.++-. ...-|..++..|++++++.
T Consensus       204 TLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~  280 (1081)
T KOG1538|consen  204 TLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTVQAKPNSQYVVV  280 (1081)
T ss_pred             eeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc-cceeEEEEEEccCCceEEE
Confidence            88888875 4444332222233467889999999999999999999953 3433444332 3456888999999999999


Q ss_pred             EEcCCeEEEEECCC
Q psy4393         214 ATLDNTLKLWDSKV  227 (247)
Q Consensus       214 ~~~dg~i~vwd~~~  227 (247)
                      |..||+|.-|+.-.
T Consensus       281 GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  281 GCQDGTIACYNLIF  294 (1081)
T ss_pred             EEccCeeehhhhHH
Confidence            99999999998643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=6e-15  Score=121.42  Aligned_cols=201  Identities=18%  Similarity=0.180  Sum_probs=135.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEe---CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE-cCCC--eEEEEEC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSS---ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDK--TLKIWEL   98 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~   98 (247)
                      .+...+.+.+|+|||+.|+..+   .+..+.+|+..+++.... ......+..+.|+|||+.|+.. +.++  .|.+||+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            3556789999999999888653   234788999877654332 2233345578999999988754 4344  5889999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC-CC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC-
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-ES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-  174 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  174 (247)
                      ++++... +..+...+....|+|+++.++..+.+ +.  |+++|+.+++. ..+...........|+|||++++..+.+ 
T Consensus       275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC
Confidence            8876543 44344456778999999988776654 44  55557766543 3333333445668899999988776543 


Q ss_pred             --CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCCcceE
Q psy4393         175 --GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKVVTPA  231 (247)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~  231 (247)
                        ..+.+||+.+++.. .+...  .......|+|||++|+.++.++   .+.+++.....+.
T Consensus       353 g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~  411 (429)
T PRK03629        353 GQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  411 (429)
T ss_pred             CCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence              35888999877643 22221  1234578999999999998776   3777887555443

>KOG1538|consensus

Probab=99.74  E-value=8.9e-16  Score=125.22  Aligned_cols=195  Identities=20%  Similarity=0.406  Sum_probs=149.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE----
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL----  104 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----  104 (247)
                      .|..++|-|||..|+.+. +..+.+||..+|...+.+++|...|.+++|+.||+.+++|+.|..+.+|+.+-...+    
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            788999999999877653 568999999999999999999999999999999999999999999999986532111    


Q ss_pred             ----EEEe-----------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-
Q psy4393         105 ----KTLK-----------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-  150 (247)
Q Consensus       105 ----~~~~-----------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  150 (247)
                          +.+.                             .....+.+++|..||++++.|-.+|+|.+-+-...+.+..-. 
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence                1000                             012357788999999999999999999988654333332222 


Q ss_pred             -CCCCCeEEEEECCCC-----CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         151 -AHSDPVSAVHFNRDG-----SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       151 -~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                       +..++|.+++|+|+.     ..+++..+..++.+|.+.....-+.....  ..-.++.+-++|.+++.|+.|+.+++|.
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEe
Confidence             346789999999963     47888888889999887654322222111  1225788999999999999999999996


Q ss_pred             CC
Q psy4393         225 SK  226 (247)
Q Consensus       225 ~~  226 (247)
                      -+
T Consensus       251 R~  252 (1081)
T KOG1538|consen  251 RD  252 (1081)
T ss_pred             ec
Confidence            43

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.74  E-value=1.3e-15  Score=111.68  Aligned_cols=149  Identities=20%  Similarity=0.450  Sum_probs=106.7

Q ss_pred             EEEEECCCCCEEEEEcC----------CCeEEEEECCC-ceEEEEEec-CCccEEEEEEcCCCCEEEEe--eCCCCEEEE
Q psy4393          73 SDVAWSSDSRLLVSGSD----------DKTLKIWELSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSG--SFDESVRIW  138 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~----------d~~i~v~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~  138 (247)
                      ..+.|+|+|+.|+.-..          -+...+|.++. +.....+.- ..++|.+++|+|+++.+++.  ..+..+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987765433          12344444421 222333322 34469999999999987654  456789999


Q ss_pred             ECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC---CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       139 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      |++ ++.+..+.  ...+..+.|+|+|+++++++.   .|.+.+||.++.+.+....   ...++.++|+|||++|++++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCCEEEEEE
Confidence            997 55556554  457788999999999998874   4679999999877665542   23468899999999999987


Q ss_pred             c------CCeEEEEECCC
Q psy4393         216 L------DNTLKLWDSKV  227 (247)
Q Consensus       216 ~------dg~i~vwd~~~  227 (247)
                      .      |+.++||+...
T Consensus       163 t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             eccceeccccEEEEEecC
Confidence            4      78999999754

>KOG2394|consensus

Probab=99.74  E-value=8.9e-17  Score=127.66  Aligned_cols=136  Identities=21%  Similarity=0.349  Sum_probs=111.9

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCC--------------e--------------EEEEEecccCCeEEEEE
Q psy4393          27 TKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG--------------K--------------FEKTISGHKLGISDVAW   77 (247)
Q Consensus        27 ~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~--------------~--------------~~~~~~~~~~~v~~~~~   77 (247)
                      ...|+++.|-|.+. .++++-.+|.+++||....              .              .+..+......|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            47899999999554 5556678999999965311              0              01111223447888999


Q ss_pred             CCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeE
Q psy4393          78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS  157 (247)
Q Consensus        78 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~  157 (247)
                      +|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|++|..|.||.+...+.+..-++|...|+
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999999998877777776667799999999999999999999999999999999998899999999


Q ss_pred             EEEEC
Q psy4393         158 AVHFN  162 (247)
Q Consensus       158 ~~~~~  162 (247)
                      .++|+
T Consensus       379 ~VaFD  383 (636)
T KOG2394|consen  379 VVAFD  383 (636)
T ss_pred             eEeec
Confidence            99998

>KOG1240|consensus

Probab=99.74  E-value=2.3e-15  Score=129.75  Aligned_cols=220  Identities=16%  Similarity=0.220  Sum_probs=162.6

Q ss_pred             CCCCCceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCCCCE
Q psy4393          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDSRL   83 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~   83 (247)
                      .+.|+..+..++..|...|..++.++.. .++++|+.||+|++|+...-       +....+.....++..+..++.+..
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            3456777888888999999999987754 89999999999999997521       223334445677899999999999


Q ss_pred             EEEEcCCCeEEEEECCCce-------EEEEEec-CCccEEEE-EEcC-CCC-EEEEeeCCCCEEEEECCCCeEEEeec--
Q psy4393          84 LVSGSDDKTLKIWELSSGK-------CLKTLKG-HSNYVFCC-NFNP-QSN-LIVSGSFDESVRIWDVRTGKCLKTLP--  150 (247)
Q Consensus        84 l~~~~~d~~i~v~d~~~~~-------~~~~~~~-~~~~v~~~-~~~~-~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--  150 (247)
                      +|.++.||.|++.++....       ..+.... ..+.+..+ ++.. .+. .++.+...+.+..||+++......++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999987521       1111111 12223332 2222 233 78888899999999999766544433  


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC---CCEEEEEE--cCCeEEEEEC
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN---GKYILAAT--LDNTLKLWDS  225 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~--~dg~i~vwd~  225 (247)
                      ...+.|++++.+|.+.+++.|+..|.+.+||++=+..+..+..+...++..+..+|-   ....++++  ..+.|.+|+.
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            345789999999999999999999999999999888888887777778877776654   34555554  4678999998


Q ss_pred             CCcceE
Q psy4393         226 KVVTPA  231 (247)
Q Consensus       226 ~~~~~~  231 (247)
                      ..+...
T Consensus      1273 ~~g~~~ 1278 (1431)
T KOG1240|consen 1273 ETGLRQ 1278 (1431)
T ss_pred             ccCcce
Confidence            776433

>KOG2110|consensus

Probab=99.74  E-value=1.5e-14  Score=110.33  Aligned_cols=198  Identities=15%  Similarity=0.216  Sum_probs=148.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec---ccCCeEEEEECCCCCEEEEEc--CCCeEEEEECCCc
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSG  101 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~  101 (247)
                      ..+|.++.++.  ++|+++=+ +.|+|||+.+.+.+..+..   +..++.++++++.+.+++.-+  ..|.|.+||..+-
T Consensus        87 pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            45677777764  45555544 4599999999888776643   444576777777777887543  3689999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCC-EEEEECCCCeEEEeecCCC--CCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      +.+..+.+|.+.+.+++|+++|.++||+++.|+ ||||.+.+|+.+.+|+-..  ..|.+++|+|++.+|++.+..++|+
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH  243 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence            999999999999999999999999999999987 7899999999999887544  3578999999999999999999999


Q ss_pred             EEeCCCceeee---------------------------ee----------ccCCCCCeEEEEEC--CCCCEEEEEEcCCe
Q psy4393         179 IWDTASGQCLK---------------------------TL----------IDDDNPPVSFVKFS--PNGKYILAATLDNT  219 (247)
Q Consensus       179 v~d~~~~~~~~---------------------------~~----------~~~~~~~v~~~~~s--~~~~~l~~~~~dg~  219 (247)
                      +|.+.......                           ..          .......-..+.+.  +..+++..++.||.
T Consensus       244 iFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~  323 (391)
T KOG2110|consen  244 IFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH  323 (391)
T ss_pred             EEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe
Confidence            99876421000                           00          00001111223444  46788999999999


Q ss_pred             EEEEECCC
Q psy4393         220 LKLWDSKV  227 (247)
Q Consensus       220 i~vwd~~~  227 (247)
                      +..|....
T Consensus       324 ~y~y~l~~  331 (391)
T KOG2110|consen  324 LYSYRLPP  331 (391)
T ss_pred             EEEEEcCC
Confidence            99998754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=7.7e-15  Score=121.28  Aligned_cols=203  Identities=17%  Similarity=0.139  Sum_probs=141.4

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC--eEEEE
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLKIW   96 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~v~   96 (247)
                      +..|.+.+.+.+|+|||+.|+..+.   +..|.+|+..++... .+..+...+...+|+|||+.|+ +.+.++  .|.+|
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence            4467788999999999998887653   468999999777553 3444555677889999999875 445554  47778


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      |+.++.. ..+..+........|+|+++.++..+. +|  .|+++|+..++. ..+..+........|+|+|+.++....
T Consensus       276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEc
Confidence            9887764 345545555566899999998887663 33  588889876544 333333445566789999999887654


Q ss_pred             C---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC------CeEEEEECCCcceE
Q psy4393         174 D---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDSKVVTPA  231 (247)
Q Consensus       174 d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~  231 (247)
                      +   ..+.+||+.++.. ..+..  ...+....|+|||++|+..+.+      ..+.++|.....+.
T Consensus       354 ~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        354 GGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             CCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            3   3688888865542 22222  2235668899999999876643      26888888766554

>KOG0290|consensus

Probab=99.73  E-value=7.9e-16  Score=113.90  Aligned_cols=192  Identities=19%  Similarity=0.279  Sum_probs=146.8

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCe---EEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~   99 (247)
                      .+..+++++.|.. +-+++.+++.|-+..|||++.+.   ....+-.|...|.+++|...+ +.+++.+.||.++++|++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            4568899999987 66788899999999999998753   456677899999999999854 468999999999999998


Q ss_pred             CceEEEEEecC---CccEEEEEEcC-CCCEEEEeeCC-CCEEEEECCCC-eEEEeecCCCCCeEEEEECCC-CCEEEEec
Q psy4393         100 SGKCLKTLKGH---SNYVFCCNFNP-QSNLIVSGSFD-ESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRD-GSLIVSSS  172 (247)
Q Consensus       100 ~~~~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~d-~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  172 (247)
                      ..+....+...   ..+...++|++ +-+++|+-..| ..|.+.|+|.. .++..+..|.+.|+.++|.|. ..++++++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            76654444332   34567788887 44677776554 46899999975 467889999999999999996 45899999


Q ss_pred             CCCeEEEEeCCCcee--e--eeeccCCCCCeEEEEECC-CCCEEEEEEc
Q psy4393         173 YDGLCRIWDTASGQC--L--KTLIDDDNPPVSFVKFSP-NGKYILAATL  216 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~--~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  216 (247)
                      .|.+..+||+...-.  .  ..+....+..|+.+.|++ ++.+++.+..
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            999999999875321  0  111122456789999995 4567777763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=9.8e-15  Score=120.53  Aligned_cols=202  Identities=20%  Similarity=0.184  Sum_probs=136.8

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC--eEEEE
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLKIW   96 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~v~   96 (247)
                      +..|...+.+.+|+|||+.|+..+.   +..|.+|+..++.... +.........+.|+|||+.++ +.+.++  .|++|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            3356677899999999999887653   3469999997765433 333344455789999999775 444444  69999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      |+.+++.. .+..+........|+|+++.++..+. ++.  |+++|+.+++.. .+..+.......+|+|+|+.++..+.
T Consensus       278 d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        278 DLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC
Confidence            99887643 44444444456799999998887654 444  667777666532 22222334456899999999887654


Q ss_pred             CC---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCCcce
Q psy4393         174 DG---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKVVTP  230 (247)
Q Consensus       174 dg---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~  230 (247)
                      ++   .|.+||+.+++.. .+...  .......|+|||++|+..+.+   +.|.+++......
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~  415 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR  415 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            33   6899999877644 23221  123456899999998887753   3688888865443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=1.2e-14  Score=115.99  Aligned_cols=196  Identities=16%  Similarity=0.253  Sum_probs=132.1

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCeEEEEecCC-CeE---EEEEecccCCeEEEEECCCCCEEEEE-cCCCeEEEEECCCc
Q psy4393          28 KAVSSVKFSPNGEWLASSSA-DKLIKIWGAYD-GKF---EKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSG  101 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~  101 (247)
                      +....++|+|++++|++++. ++.|.+|+..+ +..   ...+. +......++++|++++++++ ..++.|.+||+.+.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            34568999999998887664 78999999863 221   22222 22346778899999988654 45689999999763


Q ss_pred             eEEEE-----Ee-cCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCC--Ce--EEEeecCC------CCCeEEEEECCC
Q psy4393         102 KCLKT-----LK-GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRT--GK--CLKTLPAH------SDPVSAVHFNRD  164 (247)
Q Consensus       102 ~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~--~~~~~~~~------~~~i~~~~~~~~  164 (247)
                      ..+..     .. ........+.|+|++++++++.. ++.|.+||+..  ++  .+..+...      ......+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            32211     11 11233567899999999988876 88999999973  22  23333221      112335889999


Q ss_pred             CCEEEEecC-CCeEEEEeCCCce----eeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECC
Q psy4393         165 GSLIVSSSY-DGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSK  226 (247)
Q Consensus       165 ~~~l~~~~~-dg~i~v~d~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~  226 (247)
                      +++++++.. ++.|.+|++....    ........  .....+.++|||++|+++.. +++|.+|+.+
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999988854 6899999985432    12221111  12346899999999998875 8999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.1e-14  Score=119.96  Aligned_cols=198  Identities=25%  Similarity=0.290  Sum_probs=130.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEE--E
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIW--E   97 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~--d   97 (247)
                      ..+...+.+.+|+|||+.|+..+..   ..|.+||..+++... +..........+|+|||+.|+ +.+.++...+|  |
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            3567789999999999998876532   359999998776543 333344566889999999886 45667765555  4


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEE--CCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWD--VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      ...+. ...+..+........|+|+|+.++..+. ++...+|.  +.++.. ..+...........|+|+|++++..+.+
T Consensus       271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~  348 (427)
T PRK02889        271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRV  348 (427)
T ss_pred             CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEcc
Confidence            54443 3445444444556789999998876654 45556664  444432 2222222233457899999998876654


Q ss_pred             C---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCC
Q psy4393         175 G---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKV  227 (247)
Q Consensus       175 g---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~  227 (247)
                      +   .|.+||+.+++... +...  .......|+|||++|+.++.++   .+.+.+...
T Consensus       349 ~g~~~I~v~d~~~g~~~~-lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        349 GGAFKLYVQDLATGQVTA-LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             CCcEEEEEEECCCCCeEE-ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            4   69999998876432 2222  2235678999999998887544   466666643

>KOG2111|consensus

Probab=99.71  E-value=2e-14  Score=107.65  Aligned_cols=177  Identities=23%  Similarity=0.377  Sum_probs=132.8

Q ss_pred             CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC-CceEEEEEecCCccEEEEEEcC--CCCE
Q psy4393          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHSNYVFCCNFNP--QSNL  125 (247)
Q Consensus        49 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~  125 (247)
                      ..|.|||-...+...++. ...+|.++.+.++  .|++. ..+.|.+|... +.+.++.+.....+---|+..|  ...+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            479999966666666554 4567999998865  45544 45789999987 3444454433221211334444  3345


Q ss_pred             EEE-eeCCCCEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEecCCCe-EEEEeCCCceeeeeeccC-CCCCeE
Q psy4393         126 IVS-GSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD-DNPPVS  200 (247)
Q Consensus       126 l~~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~v~  200 (247)
                      ||. |-.-|.|++-|+.....  ...+.+|...|.|++.+.+|..+|+++..|+ |++||..+++.+..+..+ ....|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            555 34568999999986554  4678899999999999999999999999995 799999999988877543 456799


Q ss_pred             EEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         201 FVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +++|||+..+|++++..|+++||.+++..
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99999999999999999999999987643

>KOG1523|consensus

Probab=99.71  E-value=7.6e-16  Score=115.29  Aligned_cols=191  Identities=18%  Similarity=0.281  Sum_probs=145.4

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEec-CCCeEE--EEEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFE--KTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      |....++..|...|+.+.|+|..+.|++|+.|..-++|.. .++...  ..+..+....+++.|+|.++.+++++....|
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence            6677788899999999999999999999999999999998 455443  3345667789999999999999999999999


Q ss_pred             EEEECCCceEE----EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC------------------CeEEEeecC
Q psy4393          94 KIWELSSGKCL----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT------------------GKCLKTLPA  151 (247)
Q Consensus        94 ~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~~~  151 (247)
                      .+|-++...--    +.-+...+.|.+++|+|++-++++|+.|+..++|....                  |+.+.++..
T Consensus       125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~  204 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS  204 (361)
T ss_pred             EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence            99988765422    11234467799999999999999999999999996531                  111223334


Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393         152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       152 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                      ..+.+..+.|+|+|..|+-.+.|+.+.+-|................|...+.|-.+
T Consensus       205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            45678999999999999999999999999887654222112222245555555443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=9.1e-15  Score=107.25  Aligned_cols=152  Identities=20%  Similarity=0.391  Sum_probs=107.4

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEecCC-CeEEEEEec-ccCCeEEEEECCCCCEEEEE--cCCCeEEEE
Q psy4393          31 SSVKFSPNGEWLASSSA----------DKLIKIWGAYD-GKFEKTISG-HKLGISDVAWSSDSRLLVSG--SDDKTLKIW   96 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~----------dg~v~iw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~   96 (247)
                      ..+.|+|+|++|+.-..          -+...+|.+.. ......+.- ...+|.+++|+|+|+.+++.  ..++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999998764222          13345554422 222333332 34469999999999987554  356789999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC---CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      |++ ++.+..+.  ...+..+.|+|+|+++++++.+   |.+.+||.+..+.+.....  ..++.++|+|+|++++++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence            996 55555554  4567789999999999998743   6699999998887766543  34789999999999998764


Q ss_pred             ------CCeEEEEeCCCceee
Q psy4393         174 ------DGLCRIWDTASGQCL  188 (247)
Q Consensus       174 ------dg~i~v~d~~~~~~~  188 (247)
                            |..++||+.. |+.+
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             ccceeccccEEEEEec-CeEe
Confidence                  6678899875 4433

>KOG1188|consensus

Probab=99.71  E-value=3.8e-16  Score=117.73  Aligned_cols=147  Identities=22%  Similarity=0.437  Sum_probs=120.7

Q ss_pred             CEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeec--CCC-CCe
Q psy4393          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHS-DPV  156 (247)
Q Consensus        82 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~-~~i  156 (247)
                      ..++++-.+|.|++||..+++.+..++++...+..+.|..  ....+.+++.||.|++||+|+......+.  .+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888899999999999999999999988888888865  56789999999999999999876554443  333 456


Q ss_pred             EEEEECCCCCEEEEecC----CCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCc
Q psy4393         157 SAVHFNRDGSLIVSSSY----DGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .+++.+-++..+++|+.    +-.+.+||++..+. +..+...|...|+++.|+|+. .+|++|+.||.|.|||.+..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            77777667778887764    45799999998776 777777888899999999975 58899999999999998653

>KOG1272|consensus

Probab=99.71  E-value=1.8e-17  Score=129.40  Aligned_cols=190  Identities=22%  Similarity=0.409  Sum_probs=158.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..|..+.|..+.+++|++. ...++|||- .|..+..+.. ...|..+.|-|..-+|++++..|.++.-|+.+|+.+..+
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~  247 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI  247 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH
Confidence            4577778888778877764 567899986 4444555554 346888999999999999999999999999999999888


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      ....+.+..++-+|.+..+-+|..+|.|.+|...+.+++..+..|.++|.++++.++|.+++|++.|..++|||++.-..
T Consensus       248 ~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence            88888888899999999999999999999999999999888999999999999999999999999999999999998776


Q ss_pred             eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +.+....  .+...+++|..|  +++.+....|.||-
T Consensus       328 l~t~~tp--~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  328 LHTYRTP--HPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cceeecC--CCcccccccccc--ceeeecCCeeeeeh
Confidence            6555442  345667777654  56666677999995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=9.3e-14  Score=110.96  Aligned_cols=200  Identities=13%  Similarity=0.206  Sum_probs=133.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCeEEEEecC-CCeEE--EEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCC
Q psy4393          26 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAY-DGKFE--KTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSS  100 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~  100 (247)
                      +.+....++++|++++|++++ .++.|.+|+.. ++...  .... .......++++|+++++++++. ++.+.+|++.+
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            345677889999999887654 57889999886 33322  1121 2234567999999998887764 78999999864


Q ss_pred             c-e---EEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEE-------eecCCCCCeEEEEECCCCCEE
Q psy4393         101 G-K---CLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLK-------TLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       101 ~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      . .   .+..+. .......+.++|++++++++ ..++.|.+||+.+...+.       .... ......+.|+|+++++
T Consensus       112 ~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~l  189 (330)
T PRK11028        112 DGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYA  189 (330)
T ss_pred             CCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEE
Confidence            2 1   222222 22335667899999888655 456899999997632221       1122 2335678999999999


Q ss_pred             EEecC-CCeEEEEeCCC--ce--eeeeecc--C---CCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCc
Q psy4393         169 VSSSY-DGLCRIWDTAS--GQ--CLKTLID--D---DNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVV  228 (247)
Q Consensus       169 ~~~~~-dg~i~v~d~~~--~~--~~~~~~~--~---~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~  228 (247)
                      +++.. ++.|.+|++..  ++  ....+..  .   .......+.++|++++|+++.. ++.|.+|+.+..
T Consensus       190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            88776 89999999873  22  2222211  1   0111235889999999999864 789999997543

>KOG0322|consensus

Probab=99.70  E-value=4.3e-16  Score=113.81  Aligned_cols=157  Identities=22%  Similarity=0.336  Sum_probs=123.6

Q ss_pred             CCCCeEEEEECC-CCC--EEEEEeCCCeEEEEecCCCeE----------EEEEecccCCeEEEEECCCCCEEEEEcCCCe
Q psy4393          26 HTKAVSSVKFSP-NGE--WLASSSADKLIKIWGAYDGKF----------EKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (247)
Q Consensus        26 h~~~v~~~~~s~-~~~--~l~~~~~dg~v~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   92 (247)
                      ..+.+.+..+.. ++.  +|++|.++|.+.+||...+..          ......|..+|.++.+.+.-..=++++.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            457788887644 344  456788999999999987632          2334567888999999876555567777778


Q ss_pred             EEEEECCCc--eEE--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          93 LKIWELSSG--KCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        93 i~v~d~~~~--~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      +.+|++...  .+.  ..+.-....+..+..-||++.+|++++|++||+|..++.+++..++-|...|.+++|+|+..++
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            888987643  211  1122223346778899999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeC
Q psy4393         169 VSSSYDGLCRIWDT  182 (247)
Q Consensus       169 ~~~~~dg~i~v~d~  182 (247)
                      |+++.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG2445|consensus

Probab=99.69  E-value=1.2e-14  Score=108.44  Aligned_cols=170  Identities=22%  Similarity=0.415  Sum_probs=131.4

Q ss_pred             CCCCceEEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCC---------eEEEEEecccCCeEEEEECCC-
Q psy4393          13 PKPNYVLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSD-   80 (247)
Q Consensus        13 ~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~-   80 (247)
                      +..+|...-+.+.|.+.|..+.|.+  -|+.+|+|+.|+++.||.-...         .....+......|+++.|.|. 
T Consensus        45 ~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   45 DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence            4456777888889999999999965  5899999999999999975211         122345556778999999984 


Q ss_pred             -CCEEEEEcCCCeEEEEECCCce--------------------------E------------------------------
Q psy4393          81 -SRLLVSGSDDKTLKIWELSSGK--------------------------C------------------------------  103 (247)
Q Consensus        81 -~~~l~~~~~d~~i~v~d~~~~~--------------------------~------------------------------  103 (247)
                       |-.+++++.||.++||+.....                          +                              
T Consensus       125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy  204 (361)
T KOG2445|consen  125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY  204 (361)
T ss_pred             cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence             7789999999999999742100                          0                              


Q ss_pred             -----------EEEEecCCccEEEEEEcCC----CCEEEEeeCCCCEEEEECCCC--------------------eEEEe
Q psy4393         104 -----------LKTLKGHSNYVFCCNFNPQ----SNLIVSGSFDESVRIWDVRTG--------------------KCLKT  148 (247)
Q Consensus       104 -----------~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~v~d~~~~--------------------~~~~~  148 (247)
                                 +..+..+..+|..++|.|.    ..++|+++.|| |+||.++..                    +.+..
T Consensus       205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence                       0011245677889999984    46899999999 999998731                    12445


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      +..|.+.|..+.|+-.|..|++.+.||.+++|...
T Consensus       284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            67889999999999999999999999999999643

>KOG1524|consensus

Probab=99.69  E-value=9.3e-16  Score=122.10  Aligned_cols=179  Identities=26%  Similarity=0.376  Sum_probs=140.0

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEE
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF  119 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  119 (247)
                      ..++.++.||.+.+.+- .++....+..|.+.+.+-.|+|||.-++++++||.|++|.- +|..-..+......|.|++|
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence            35777889999888764 56777888899999999999999999999999999999995 34333334445677999999


Q ss_pred             cCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393         120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       120 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                      .|+.+.++.+. .+++.+=-+.....+-..++|++.|.++.|++...++++|++|-..++||..... +.. ...+..+|
T Consensus       154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-Lf~-S~~~ey~I  230 (737)
T KOG1524|consen  154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-LFT-SAAEEYAI  230 (737)
T ss_pred             CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-ccc-CChhccce
Confidence            99988777653 4667776776666677889999999999999999999999999999999976432 322 23456789


Q ss_pred             EEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         200 SFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ++++|+|+ +.++.++. +++|+=..
T Consensus       231 TSva~npd-~~~~v~S~-nt~R~~~p  254 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSY-NTARFSSP  254 (737)
T ss_pred             eeeeeccc-cceeeeee-eeeeecCC
Confidence            99999999 55555553 45664333

>KOG1963|consensus

Probab=99.69  E-value=1.3e-14  Score=121.37  Aligned_cols=204  Identities=22%  Similarity=0.443  Sum_probs=161.8

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC---CEEEEEcCCCeEEEEECC
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS---RLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~v~d~~   99 (247)
                      +.+-...-....|++|+++++.+. +..|.||...++.+...+..|..++..+.+.|..   ..+++++.+|.|++||..
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            434444444567999999888764 5689999999999999999999999999998754   356789999999999976


Q ss_pred             CceEEEEEe-----------------------------------------------------------------------
Q psy4393         100 SGKCLKTLK-----------------------------------------------------------------------  108 (247)
Q Consensus       100 ~~~~~~~~~-----------------------------------------------------------------------  108 (247)
                      .+..++.+.                                                                       
T Consensus        91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            543322210                                                                       


Q ss_pred             --------------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC--C--eEEEeecCC
Q psy4393         109 --------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT--G--KCLKTLPAH  152 (247)
Q Consensus       109 --------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~--~~~~~~~~~  152 (247)
                                                      .|...+.+.+++|.+.++++|..||.|.+|.--.  +  .....+..|
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence                                            0112245678899999999999999999995432  1  234556778


Q ss_pred             CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ...|.++.|+++|.+|++|+.+|.+.+|.+.+++  +.++..-+++|..+.++||+.+.+...+|+.|.+-...++.
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            8899999999999999999999999999999887  55666677899999999999999999999999999875544

>KOG2394|consensus

Probab=99.69  E-value=1.3e-15  Score=121.24  Aligned_cols=168  Identities=18%  Similarity=0.264  Sum_probs=123.2

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEE----ecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCC-----------
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS-----------  100 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~-----------  100 (247)
                      |.+--|+.+-..|.|++.|....+....+    ......|+++.|-|. ...++++-.+|.+.+||...           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            34445666777888888876542221111    123467999999984 44566777899999997531           


Q ss_pred             ---ceEEE--------------EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC
Q psy4393         101 ---GKCLK--------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (247)
Q Consensus       101 ---~~~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  163 (247)
                         +....              .+.-..+.|...+|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence               11111              1111233577789999999999999999999999988777777777778899999999


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS  205 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s  205 (247)
                      ||+++++|++|..|.||.+...+.+.. -..|.+-|+.++|+
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFD  383 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeec
Confidence            999999999999999999988776554 44566778888887

>KOG0771|consensus

Probab=99.69  E-value=1.1e-15  Score=118.13  Aligned_cols=158  Identities=26%  Similarity=0.379  Sum_probs=117.8

Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC
Q psy4393          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH  152 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  152 (247)
                      ..++|+++|..+++++.||.+|+|+..+...+.....|...|.++.|+|+++++++-+.| ..+||+.+++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            568999999999999999999999987766666777888899999999999999999999 8999999999666554422


Q ss_pred             --CCCeEEEEECCCC---CEE--EEecCCCeEEEEeCCCcee---eeee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393         153 --SDPVSAVHFNRDG---SLI--VSSSYDGLCRIWDTASGQC---LKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (247)
Q Consensus       153 --~~~i~~~~~~~~~---~~l--~~~~~dg~i~v~d~~~~~~---~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  221 (247)
                        ......+.|+.++   .++  +.....+.+..||+.....   ++.. .......|++++.++||++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence              2234556777665   222  2223345666666543322   1111 111234689999999999999999999999


Q ss_pred             EEECCCcceE
Q psy4393         222 LWDSKVVTPA  231 (247)
Q Consensus       222 vwd~~~~~~~  231 (247)
                      |++....+.+
T Consensus       307 i~~~~~lq~~  316 (398)
T KOG0771|consen  307 IYDAKSLQRL  316 (398)
T ss_pred             EEEeceeeee
Confidence            9999877643

>KOG1517|consensus

Probab=99.67  E-value=4.8e-15  Score=126.31  Aligned_cols=194  Identities=18%  Similarity=0.301  Sum_probs=144.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc---eEEEE
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG---KCLKT  106 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~  106 (247)
                      -+.|.....+|++++.-..|+|||.+.......+.. ....++++.-+- .|+.+++|-.||.+++||.+..   ..+..
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            356777666666666678999999987776665543 334466665443 4789999999999999998753   24556


Q ss_pred             EecCCcc--EEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEE--eecCCC--C-CeEEEEECCCCCEEEEecCCCeEE
Q psy4393         107 LKGHSNY--VFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLK--TLPAHS--D-PVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       107 ~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      .+.|...  |..+.+.+.|- .+++|+.+|.|++||+|......  .+..|.  + ..+++..+++...+|+|+. +.|.
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence            6777766  88888888664 49999999999999999842221  222222  3 4899999999999999988 9999


Q ss_pred             EEeCCCceeee-----eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         179 IWDTASGQCLK-----TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       179 v~d~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ||++...+...     .+.....+.+.+++|||..-+||+|..|.+|.||...
T Consensus      1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            99987543221     1222334567999999999999999999999999653

>KOG4227|consensus

Probab=99.65  E-value=2.6e-14  Score=110.16  Aligned_cols=205  Identities=17%  Similarity=0.236  Sum_probs=151.3

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------CeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------GKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      +.+|.+-|.++.|+.++++|++|+.|-.+++|.+..      .+...... .|...|.+++|.....++.+|..+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            347999999999999999999999999999999753      22233222 34577999999998999999999999999


Q ss_pred             EECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEE--eecCCCCCeEEEEECCCC-CEEE
Q psy4393          96 WELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLK--TLPAHSDPVSAVHFNRDG-SLIV  169 (247)
Q Consensus        96 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~--~~~~~~~~i~~~~~~~~~-~~l~  169 (247)
                      .|+++.+.+..+..  ..+.|..+..+|..+.+++.+.++.|.+||.+..+ .+.  ...........+-|+|-. .+|+
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~  211 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL  211 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence            99999887655542  23579999999999999999999999999998654 221  122233456778899865 4778


Q ss_pred             EecCCCeEEEEeCCCceeee-ee-----ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         170 SSSYDGLCRIWDTASGQCLK-TL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~-~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +.+..+-+.+||.+..+... ..     +...........|+|+|..|++--...-=.+||.-.
T Consensus       212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            88888999999998654211 10     111123345678999998887765544445566544

>KOG4497|consensus

Probab=99.65  E-value=3.8e-15  Score=112.22  Aligned_cols=200  Identities=18%  Similarity=0.326  Sum_probs=144.1

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~  105 (247)
                      ..|.-+.|..|..+++. +..++.|.+|++...+.-.++.....++..+.|+|||+.|+..+ -+-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            34566788888887654 56788999999999988889988888999999999998776554 47789999998876543


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeCCCC---EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDES---VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                       ++-....+..++|+|+|++.+..+.-..   +.+........++.++...-..+.+.|+|||..|+         +||.
T Consensus       129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~  198 (447)
T KOG4497|consen  129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDN  198 (447)
T ss_pred             -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecc
Confidence             3333344677899999999988765432   22222222333455555555678899999999887         4543


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      --..  +.+..+.+..+..++|+|.+++|+.|+.|+.+||.+--+.+++..+..+.+
T Consensus       199 ~Ley--kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s  253 (447)
T KOG4497|consen  199 VLEY--KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS  253 (447)
T ss_pred             hhhh--eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence            2111  111223345678899999999999999999999998877777766655444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=4.7e-13  Score=110.31  Aligned_cols=200  Identities=22%  Similarity=0.217  Sum_probs=135.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEE-EcCCC--eEEEEEC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWEL   98 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~v~d~   98 (247)
                      .+...+.+.+|+|||++|+.+...   ..|++|+..+++... +..+...+..++|+|||+.|+. .+.++  .|++||+
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            455678899999999999876543   479999998775433 3334445667899999997764 44443  5888998


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .++... .+..+........|+|+++.++..+. ++  .|+++|+.+++. ..+..+........|+|++++++.++.++
T Consensus       266 ~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       266 DGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             CCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC
Confidence            876543 33333333445689999998876654 33  578888877653 33333445566789999999998887765


Q ss_pred             ---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCCcce
Q psy4393         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKVVTP  230 (247)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~  230 (247)
                         .|.+||+.++... .+...  .......|+|||++|+..+.++   .+.+.+......
T Consensus       344 ~~~~i~~~d~~~~~~~-~l~~~--~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~  401 (417)
T TIGR02800       344 GGFNIAVMDLDGGGER-VLTDT--GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR  401 (417)
T ss_pred             CceEEEEEeCCCCCeE-EccCC--CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence               7889998875432 22211  1223468999999998887654   566666554333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.4e-14  Score=117.14  Aligned_cols=177  Identities=16%  Similarity=0.160  Sum_probs=120.0

Q ss_pred             CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCCccEEEEEEcCCCC
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN  124 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  124 (247)
                      +..|.+||..... ...+..+...+..+.|+|||+.|+.++.+   ..|++||+.+++... +...........|+|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence            4688999975444 45566667779999999999999887643   479999998875432 222222334679999999


Q ss_pred             EEEEee-CCCCEEE--EECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         125 LIVSGS-FDESVRI--WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       125 ~l~~~~-~d~~i~v--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      .++.+. .+|.+.+  ||+.++. ...+..+...+....|+|||+.|+.++ .+|...+|++............ ..  .
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~--~  336 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG--Y  336 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC--C
Confidence            888764 5776555  5666554 344555666678899999999776554 5677777765432111222222 22  3


Q ss_pred             EEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         201 FVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ...|+|||++|+.++.++ +.+||..++...
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence            478999999999887765 555998877654

>KOG1587|consensus

Probab=99.64  E-value=4.3e-14  Score=117.15  Aligned_cols=210  Identities=20%  Similarity=0.239  Sum_probs=152.4

Q ss_pred             eEEEEEecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCeEE------EEEe------cccCCeEEEEECC-CCC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFE------KTIS------GHKLGISDVAWSS-DSR   82 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~   82 (247)
                      .+......|..+|+.+.|..+..  -+++++.||.|..|+...-...      ....      ....+++.+.|.+ +-.
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            34445567999999999976544  4889999999999987532210      0111      1234588899987 446


Q ss_pred             EEEEEcCCCeEEEEECCCceE--------EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeEEEeecCCC
Q psy4393          83 LLVSGSDDKTLKIWELSSGKC--------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCLKTLPAHS  153 (247)
Q Consensus        83 ~l~~~~~d~~i~v~d~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~  153 (247)
                      .++.|+..|.|.--+-.....        ...+..|.+.|..+.++|-+..++..+.|..+++|... ...++..+..+.
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~  441 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP  441 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc
Confidence            788999999887644332211        22445678899999999988777666669999999987 556666777777


Q ss_pred             CCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         154 DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       154 ~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..+++++|+|... .++++..+|.+.+||+........... ........+.|+++|+.|++|...|++++|++..
T Consensus       442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            7899999999654 677888899999999876443222211 1244567788999999999999999999999854

>KOG2139|consensus

Probab=99.64  E-value=8.7e-14  Score=106.09  Aligned_cols=192  Identities=21%  Similarity=0.386  Sum_probs=135.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCCc-eE-
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-KC-  103 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~-~~-  103 (247)
                      -.+..++|++.-..+|.+..|..|++|+... .....++ .....|++++|.|. ++.++.|+..| |.+|..... .. 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            4567889998666678889999999999766 3333333 33456999999995 45566666554 778976421 11 


Q ss_pred             ------------EEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393         104 ------------LKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       104 ------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                                  +..-.+| .+|..+.|+++|..+++++- +..|.+||..++..+.-.....+.++-+.|+||+.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                        1111223 57899999999999998864 567999999998876555455677889999999999999


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ++-|+..++|+............. .+.|....|+|+|++|+.+.. |.=++|.
T Consensus       256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            999999999965432222222222 237888899999998876653 3333443

>KOG1517|consensus

Probab=99.64  E-value=3.6e-14  Score=121.11  Aligned_cols=201  Identities=20%  Similarity=0.314  Sum_probs=140.5

Q ss_pred             CCeEEEEECC--CCCEEEEEeCCCeEEEEecCCC-----eEEEEE---ec----ccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          28 KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG-----KFEKTI---SG----HKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        28 ~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~-----~~~~~~---~~----~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      ..|+.+.+-.  |..++++|+.||.|+||+-...     +.+.-.   .+    ..+.-.-+.|-.....|+++++-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            5688888754  4557889999999999975422     111111   11    11111235677666677777778999


Q ss_pred             EEEECCCceEEEEEecCC-ccEEEEEEc-CCCCEEEEeeCCCCEEEEECCCCe---EEEeecCCCCC--eEEEEECCCCC
Q psy4393          94 KIWELSSGKCLKTLKGHS-NYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDP--VSAVHFNRDGS  166 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~  166 (247)
                      ++||.........+.... ..+..+.-+ +.|+.+++|..||.+++||.|...   .+...+.|...  |..+.+.+.|-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            999998877766554332 234443322 347999999999999999998654   35566677665  88888888665


Q ss_pred             -EEEEecCCCeEEEEeCCCceeeee--eccCC--CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         167 -LIVSSSYDGLCRIWDTASGQCLKT--LIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       167 -~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                       .|++|+.+|.|++||++.......  ...+.  ++..+++..|++...+|+|+. +.|+||+....+
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence             499999999999999998421111  11111  234899999999999999998 999999986543

>KOG1963|consensus

Probab=99.63  E-value=1.8e-13  Score=114.58  Aligned_cols=159  Identities=21%  Similarity=0.341  Sum_probs=119.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--C--eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      .|...+++.+++|+++++|+|..||.|.+|.-..  .  ..-..+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3667789999999999999999999999997543  1  12345677888999999999999999999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe---ecCC--------CCCeEEEEECCCCCEEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT---LPAH--------SDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~~~~--------~~~i~~~~~~~~~~~l~  169 (247)
                      ++ .+-+..-.++|..+.++||+.+.+....|..|++....+-.....   +...        .+-.+.++++|..+.++
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            87 344555677899999999999999999999999887643222111   1111        22344556666545555


Q ss_pred             EecCCCeEEEEeCCC
Q psy4393         170 SSSYDGLCRIWDTAS  184 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~  184 (247)
                      -.+..|.|.+||+-+
T Consensus       362 ln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYT  376 (792)
T ss_pred             ecCCCceEEEEeccc
Confidence            555666666666544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.4e-12  Score=107.93  Aligned_cols=201  Identities=19%  Similarity=0.179  Sum_probs=131.8

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEE-EcCCC--eEEEEE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWE   97 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~v~d   97 (247)
                      ..+...+....|+|||+.|+..+.+   ..|.+|+..+++... +...........|+|||+.|+. ...++  .|.++|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            3466778999999999998765533   368888987775543 3333334556899999998864 44444  688889


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      +.+++.. .+..+........|+|+++.++..+. ++  .|+++|+.+++... +...........|+|+|+.++....+
T Consensus       274 ~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        274 LASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             CCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc
Confidence            9877643 34444444556789999998876653 33  57777887776432 22222233456899999988776543


Q ss_pred             -C--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCCcce
Q psy4393         175 -G--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKVVTP  230 (247)
Q Consensus       175 -g--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~  230 (247)
                       +  .|.++|+.+++.. .+...  .......|+|||++++..+.+   ..|.+++.+....
T Consensus       352 ~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        352 DGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             CCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence             3  5788898887542 22221  112245899999999887754   3577777755443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=8.3e-13  Score=108.53  Aligned_cols=207  Identities=16%  Similarity=0.085  Sum_probs=129.1

Q ss_pred             CCCCeEEEEECCCCCEE---EEEeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-CC----eEEE
Q psy4393          26 HTKAVSSVKFSPNGEWL---ASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DK----TLKI   95 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l---~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v   95 (247)
                      ....+.+.+|+|||+.+   ++...+|  .|.+.++.+++.. .+..........+|+|||+.|+..+. +|    .+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            34566788999999853   2444444  4666677666543 33334445567899999998876543 22    3444


Q ss_pred             EECCCc---eEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEE--ECCC-CeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          96 WELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIW--DVRT-GKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        96 ~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~--d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      |++..+   +................|+|+|+.|+..+ .+|...+|  ++.. +.....+..+...+....|+|||+.|
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            676542   22222222223335678999999887665 45654444  5432 22233444444456778999999988


Q ss_pred             EEecCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc---CCeEEEEECCCcceEEEEc
Q psy4393         169 VSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       169 ~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~  235 (247)
                      +..+.+   ..|.+||+.+++... +... ...+....|+|||++|+..+.   +..|.++|....+...+..
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            766543   378999998886543 2222 234566899999999886553   3578899988776655543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=4e-12  Score=102.22  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=136.0

Q ss_pred             CEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEE
Q psy4393          40 EWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN  118 (247)
Q Consensus        40 ~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~  118 (247)
                      +++ ++-..++.|.+.|..+.+....+......-..+.++|||+++++++.||.|.++|+.+.+.+..++.... ...++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            344 4455689999999999888888876444344577999999999999999999999999999988886554 56799


Q ss_pred             EcCCCCEEEEee-CCCCEEEEECCCCeEEEeecCC-------CCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCCceeee
Q psy4393         119 FNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAH-------SDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLK  189 (247)
Q Consensus       119 ~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~  189 (247)
                      ++++|+++++++ ..+.+.++|.++.+.++.+...       ...+..+..+|....++.. -..+.|.+.|....+.+.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999998775 6889999999999888877543       2356677778887755554 445888888977654443


Q ss_pred             eeccCCCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCCcceEEEEc
Q psy4393         190 TLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ..............|+|++++++.+ ..++.|-++|.+..+......
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            2222233445678999999988775 457899999999887665543

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=9.4e-13  Score=108.93  Aligned_cols=175  Identities=16%  Similarity=0.172  Sum_probs=123.3

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC---CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.++|.. +.....+..+...+....|+|||+.|+..+.   +..|.+||+.+++.. .+......+....|+|+|+.+
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            67777764 4444556667778999999999999887653   468999999887653 344455566778999999877


Q ss_pred             E-EeeCCCC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 V-SGSFDES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~-~~~~d~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      + +.+.++.  |++||+.++.. ..+..+........|+|||+.++..+. +|  .|.++|+.+++... +.. ....+.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~-~~~~~~  337 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF-GGGRYS  337 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec-CCCccc
Confidence            6 4455554  77889887754 445555555667899999998876653 33  68888987665433 222 223455


Q ss_pred             EEEECCCCCEEEEEEcC---CeEEEEECCCcc
Q psy4393         201 FVKFSPNGKYILAATLD---NTLKLWDSKVVT  229 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~  229 (247)
                      ...|+|||++|+..+.+   ..|.+||.....
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            67899999999887653   368888875544

>KOG1587|consensus

Probab=99.61  E-value=1.3e-13  Score=114.25  Aligned_cols=201  Identities=22%  Similarity=0.261  Sum_probs=139.9

Q ss_pred             CCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeE--EE----EEecccCCeEEEEECCCC--CEEEEEcCCCeEEEEE
Q psy4393          27 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKF--EK----TISGHKLGISDVAWSSDS--RLLVSGSDDKTLKIWE   97 (247)
Q Consensus        27 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d   97 (247)
                      ...|++++|+| +..+++.|..+|.|.+||...+..  ..    ....|..++..+.|..+-  .-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            57899999999 556788889999999999976554  22    234678889999997643  3488999999999998


Q ss_pred             CCCceE-EE-----EEe------cCCccEEEEEEcC-CCCEEEEeeCCCCEEEEEC---CCCe-----EEEeecCCCCCe
Q psy4393          98 LSSGKC-LK-----TLK------GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV---RTGK-----CLKTLPAHSDPV  156 (247)
Q Consensus        98 ~~~~~~-~~-----~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~---~~~~-----~~~~~~~~~~~i  156 (247)
                      ++.-.. ..     ...      .....+..+.|.+ +-..++.|+++|.|.--+-   +...     .......|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            764221 00     001      1123466777876 3467889999998776322   2221     123456788999


Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCc
Q psy4393         157 SAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  228 (247)
                      .++.++|=+..++..+.|-.+++|... ...++..+ ......+..++|||-.. .++++..||.|.+||+...
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            999999966544444449999999876 44433332 22334589999999765 5567778999999998654

>KOG1310|consensus

Probab=99.61  E-value=3.2e-15  Score=119.43  Aligned_cols=168  Identities=26%  Similarity=0.495  Sum_probs=131.0

Q ss_pred             EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE-ecCCccEEEEEEcC--CCCEEEEeeCCCCEEE
Q psy4393          61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCCNFNP--QSNLIVSGSFDESVRI  137 (247)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v  137 (247)
                      ....+.+|.+.|.++.|+.+|.+|++|++|-.+.|||.-..+.++.+ .+|...|.++.|-|  ...++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34568899999999999999999999999999999999877766655 57889999999988  4568899999999999


Q ss_pred             EECCCC----------eEEEeecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCcee-------eeeecc--CCCC
Q psy4393         138 WDVRTG----------KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC-------LKTLID--DDNP  197 (247)
Q Consensus       138 ~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~--~~~~  197 (247)
                      ||+...          .....+..|...|..++-.|++ ..+-++++||.++-||++....       ...+..  ..-.
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999742          2234455677788888888988 5778999999999999987321       111111  1112


Q ss_pred             CeEEEEECCCCC-EEEEEEcCCeEEEEECCCc
Q psy4393         198 PVSFVKFSPNGK-YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       198 ~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  228 (247)
                      ...++..+|... +|+.|+.|-..++||.+..
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~  233 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRV  233 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence            346788999764 7788999999999995443

>KOG2139|consensus

Probab=99.60  E-value=3.2e-13  Score=103.03  Aligned_cols=198  Identities=15%  Similarity=0.286  Sum_probs=131.7

Q ss_pred             CCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCe-EE-----------EEEe-cccCCeEEEEECCCCCEEEEEcC-CC
Q psy4393          27 TKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGK-FE-----------KTIS-GHKLGISDVAWSSDSRLLVSGSD-DK   91 (247)
Q Consensus        27 ~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~-~~-----------~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~   91 (247)
                      ...|++++|-|.+ +.|+.|+.. .|.+|.....- ..           ..++ ....+|+++.|.+||..+++++- +.
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence            5689999999954 567777765 48899764211 11           1111 11357999999999999998875 66


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      .|.+||..++..+.......+.+.-+.|+|++.+++.+.-|+..++|+.. +.... ......+.|...+|+|+|++|+.
T Consensus       219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE-RWILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec-ceeccCCceeeeeecCCCCEEEE
Confidence            89999999988766553445567788999999999999999999999544 33332 23334568999999999997654


Q ss_pred             ecCCCeEEEEeCC----Cce------eeeeec---------cC----CCCCeEEEEECCCCCEEEEEEcCC--------e
Q psy4393         171 SSYDGLCRIWDTA----SGQ------CLKTLI---------DD----DNPPVSFVKFSPNGKYILAATLDN--------T  219 (247)
Q Consensus       171 ~~~dg~i~v~d~~----~~~------~~~~~~---------~~----~~~~v~~~~~s~~~~~l~~~~~dg--------~  219 (247)
                      .... .-.+|.+.    ...      ....+.         ..    ......+++|+|.|.+||+.-..+        .
T Consensus       298 ~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~  376 (445)
T KOG2139|consen  298 ACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH  376 (445)
T ss_pred             EEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence            4322 22333321    100      001110         00    134567899999999999875433        4


Q ss_pred             EEEEECCC
Q psy4393         220 LKLWDSKV  227 (247)
Q Consensus       220 i~vwd~~~  227 (247)
                      |.+||.+.
T Consensus       377 i~~fdtr~  384 (445)
T KOG2139|consen  377 ISRFDTRK  384 (445)
T ss_pred             hhhhcccc
Confidence            66677554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=5.5e-13  Score=109.91  Aligned_cols=179  Identities=19%  Similarity=0.222  Sum_probs=117.3

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC---CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.++|. ++.....+..+...+.+.+|+|||+.|+..+.   ...|.+||+.+++... +...........|+|+|+.+
T Consensus       177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            5666665 34444445556667889999999999887654   2469999998886543 33333445678999999988


Q ss_pred             EE-eeCCCCEEEE--ECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CCeEEEE--eCCCceeeeeeccCCCCCeE
Q psy4393         127 VS-GSFDESVRIW--DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIW--DTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~--d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +. .+.++...+|  |+..+. ...+..+........|+|||+.++..+. +|...+|  ++.+++...... . .....
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~-g~~~~  331 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-T-GSYNT  331 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-C-CCCcC
Confidence            64 5667765555  555443 3445444555567789999998876553 4555555  545544322221 1 12233


Q ss_pred             EEEECCCCCEEEEEEcCC---eEEEEECCCcceEEE
Q psy4393         201 FVKFSPNGKYILAATLDN---TLKLWDSKVVTPAII  233 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~  233 (247)
                      ..+|+|||++|+..+.++   .|.+||..+.+...+
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l  367 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL  367 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence            578999999999877654   699999887765433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4e-12  Score=105.25  Aligned_cols=199  Identities=17%  Similarity=0.153  Sum_probs=126.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeC-CC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEE-EcCCC--eEEEEECC
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSA-DK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWELS   99 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~v~d~~   99 (247)
                      +...+.+..|+|||++|+..+. ++  .|.+||..+++... +...........|+|||+.|+. .+.++  .|.++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            4456778999999998886543 33  57888887765433 2222333457899999998765 45555  47788888


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC-C
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G  175 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g  175 (247)
                      +++.. .+..+........|+|+++.++..+. ++  .|+++|+.+++... +...........|+|||++++..+.+ +
T Consensus       295 tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        295 TKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            76643 34444444566789999998876653 33  46777887766432 22222223446899999988776543 3


Q ss_pred             --eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-C--eEEEEECCCcce
Q psy4393         176 --LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-N--TLKLWDSKVVTP  230 (247)
Q Consensus       176 --~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~  230 (247)
                        .|.++|+.+++.. .+... . ......|+|||++|+..+.+ |  .+.+++.+....
T Consensus       373 ~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~  429 (448)
T PRK04792        373 KFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK  429 (448)
T ss_pred             ceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence              4666788777543 22211 1 11234799999998876653 3  477777754433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=7.1e-13  Score=109.53  Aligned_cols=179  Identities=17%  Similarity=0.148  Sum_probs=122.7

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC---CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.+||... .....+..+...+...+|+|||+.|+..+.   ...|.+||+.+++... +....+......|+|+|+.+
T Consensus       185 ~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            578888743 334445556667889999999999887763   3479999998876533 33333444567999999877


Q ss_pred             EE-eeCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VS-GSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +. .+.++  .|++||+.+++. ..+..+........|+|||+.++.++. +|  .+.++|+.+++...... . .....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~-g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q-GNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C-CCCcc
Confidence            64 44454  599999988764 344444445567899999998876653 44  46777777665433221 1 12234


Q ss_pred             EEEECCCCCEEEEEEcCC---eEEEEECCCcceEEE
Q psy4393         201 FVKFSPNGKYILAATLDN---TLKLWDSKVVTPAII  233 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~  233 (247)
                      ..+|+|||++|+..+.++   .|.+||..++++...
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence            579999999998876443   699999987766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=2e-11  Score=98.19  Aligned_cols=213  Identities=16%  Similarity=0.281  Sum_probs=135.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEECC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELS   99 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~   99 (247)
                      .++......-..+.|+|||+++++++.||.|.++|+.+.+....+.... ....+++++||++++++. ..+.+.++|.+
T Consensus        30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            3443333334557899999999999999999999999999888887533 467899999999988765 57899999988


Q ss_pred             CceEEEEEec------------------CC-----------c----------------------cEEEEEEcCCCCEEEE
Q psy4393         100 SGKCLKTLKG------------------HS-----------N----------------------YVFCCNFNPQSNLIVS  128 (247)
Q Consensus       100 ~~~~~~~~~~------------------~~-----------~----------------------~v~~~~~~~~~~~l~~  128 (247)
                      +.+.++.+..                  +.           +                      ......|+|++++++.
T Consensus       109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred             cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence            7655543321                  00           0                      1123467788887655


Q ss_pred             e-eCCCCEEEEECCCCeEEEee-------------------------------------------------------cCC
Q psy4393         129 G-SFDESVRIWDVRTGKCLKTL-------------------------------------------------------PAH  152 (247)
Q Consensus       129 ~-~~d~~i~v~d~~~~~~~~~~-------------------------------------------------------~~~  152 (247)
                      + ..+..+-++|..+++.+..+                                                       ...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            4 44556777777665433211                                                       001


Q ss_pred             CCCeEEEEECCCCCEEEEe----cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc--CCeEEEEECC
Q psy4393         153 SDPVSAVHFNRDGSLIVSS----SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL--DNTLKLWDSK  226 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~  226 (247)
                      ..+ .-+..+|+++++.+.    ...+.|.++|..+.+....+.......+..+.|++||+++..+..  ++.|.|||.+
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            111 234568999999887    445799999999987766654433445788999999998876654  3479999999


Q ss_pred             CcceEEEEc
Q psy4393         227 VVTPAIICS  235 (247)
Q Consensus       227 ~~~~~~~~~  235 (247)
                      +.+.+..+.
T Consensus       348 Tl~~~~~i~  356 (369)
T PF02239_consen  348 TLKEKKRIP  356 (369)
T ss_dssp             TTEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            988776665

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.2e-12  Score=104.12  Aligned_cols=177  Identities=12%  Similarity=0.121  Sum_probs=118.9

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc---CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.++|...... ..+..+...+...+|+|||+.|+..+   .+..+.+|++.+++... +...........|+|+|+.+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence            577787754433 33444556788999999999988654   34579999998875432 22223334467899999988


Q ss_pred             EEe-eCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC-C--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VSG-SFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +.. ..++  .|++||+.+++.. .+..+...+....|+|||+.|+..+.+ +  .|.++|+.+++... +. .......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~  334 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQ  334 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-ee-cCCCCcc
Confidence            765 3344  4889999887653 344444566788999999988766643 4  45555777665432 22 1222345


Q ss_pred             EEEECCCCCEEEEEEcC---CeEEEEECCCcceE
Q psy4393         201 FVKFSPNGKYILAATLD---NTLKLWDSKVVTPA  231 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~  231 (247)
                      ...|+|||++|+..+.+   ..|.+||..+....
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            68899999999887653   36888998777644

>KOG3881|consensus

Probab=99.57  E-value=2.7e-13  Score=104.18  Aligned_cols=178  Identities=15%  Similarity=0.287  Sum_probs=137.4

Q ss_pred             CCeEEEEECCCCCE-EEEEeCC--CeEEEEecCCCeEEEEEecc---------cCCeEEEEECCC--CCEEEEEcCCCeE
Q psy4393          28 KAVSSVKFSPNGEW-LASSSAD--KLIKIWGAYDGKFEKTISGH---------KLGISDVAWSSD--SRLLVSGSDDKTL   93 (247)
Q Consensus        28 ~~v~~~~~s~~~~~-l~~~~~d--g~v~iw~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i   93 (247)
                      .++..+.-++.... +++|+..  ..+.+||.+..+....-+.-         +.-++++.|-+.  ...+++++.-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            34555555565454 5568887  78999999877443332211         123567888886  7889999999999


Q ss_pred             EEEECCCc-eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEe
Q psy4393          94 KIWELSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        94 ~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      ++||.+.+ +++..+......+.++...|.++++++|..-+.+..||++.+..... ++...+.++++..+|.+++++++
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence            99999876 46667776677899999999999999999999999999999987766 77888999999999999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                      +.|..++|+|+.+.+.+.....  ....+++.+.++
T Consensus       309 GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~  342 (412)
T KOG3881|consen  309 GLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDD  342 (412)
T ss_pred             ccceeEEEeecccchhhhhhhh--hccccEEEecCC
Confidence            9999999999998665543322  234456666544

>KOG2111|consensus

Probab=99.57  E-value=1.1e-11  Score=93.26  Aligned_cols=155  Identities=21%  Similarity=0.331  Sum_probs=114.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEEEEecc--cCCeEEEEECCCCCEEEE-EcCCCeEEEEECCCce
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGH--KLGISDVAWSSDSRLLVS-GSDDKTLKIWELSSGK  102 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~  102 (247)
                      ..+|.++.+.++  ++++. -.+.|+||... +.+....+...  +.+.-++.-..+...|+. |-.-|.|.+-|+...+
T Consensus        94 ~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~  170 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK  170 (346)
T ss_pred             ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence            567777777654  44444 35689999876 44544444332  223333322223333443 3346899999987544


Q ss_pred             E--EEEEecCCccEEEEEEcCCCCEEEEeeCCCC-EEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         103 C--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       103 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      .  ...+.+|.+.|.|++.+-+|.++||++..|+ ||+||..+|..+.+++..  ...|.+|+|+|+..+|++++..|++
T Consensus       171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence            3  3678899999999999999999999999987 889999999999988643  3468999999999999999999999


Q ss_pred             EEEeCCC
Q psy4393         178 RIWDTAS  184 (247)
Q Consensus       178 ~v~d~~~  184 (247)
                      ++|.++.
T Consensus       251 HiF~l~~  257 (346)
T KOG2111|consen  251 HIFSLRD  257 (346)
T ss_pred             EEEEeec
Confidence            9998765

>KOG4547|consensus

Probab=99.54  E-value=5.4e-12  Score=101.78  Aligned_cols=186  Identities=19%  Similarity=0.331  Sum_probs=148.0

Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCCeEEEEEec---ccCCeEEEEE--------------------CCCCCEEEEEcCCCe
Q psy4393          36 SPNGEWLASSSADKLIKIWGAYDGKFEKTISG---HKLGISDVAW--------------------SSDSRLLVSGSDDKT   92 (247)
Q Consensus        36 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~---~~~~v~~~~~--------------------~~~~~~l~~~~~d~~   92 (247)
                      .|...++|....||.+++|+...++....+..   -.+..++..|                    +.+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567889999999999999988877665532   1333455555                    123346777888999


Q ss_pred             EEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393          93 LKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      |.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|..+..|+......++.+......+.+++++||+..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999888766664  57788999999998899999999999999999999999999888888999999999999988


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC-----CCEEEEE-EcCCeEEEEE
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-----GKYILAA-TLDNTLKLWD  224 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~vwd  224 (247)
                      ++  ++|++||+.+++.+.++ .+|.++|++++|-.+     |.+++++ ..+.-+.+|-
T Consensus       162 as--~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             cc--ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            75  67999999999877765 567789999999877     6666654 3455666664

>KOG0974|consensus

Probab=99.52  E-value=1.1e-12  Score=111.90  Aligned_cols=193  Identities=21%  Similarity=0.263  Sum_probs=150.4

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC----eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ...+..+...++.++.+..+.+||...+.....+......    ..-+.++++.-++++|+--+.|.+|+....+.-..+
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l  171 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL  171 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence            3444455667788888889999998766555444332211    122345667778899999999999998733222257


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE-eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      .+|.+.+..+.++-+|.++++.+.|+.+++|++.+.+... ..-.|...+..+++.|+  .+++++.|.+.++|+... +
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~  248 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-T  248 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-c
Confidence            8999999999999999999999999999999999887655 55578899999999998  899999999999996543 3


Q ss_pred             eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+..+..+....+..++.+++...+++++.|+.+++||...
T Consensus       249 ~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  249 QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            34455555567788999999999999999999999999754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=3e-11  Score=99.65  Aligned_cols=178  Identities=17%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.++|... .....+..+...+....|+|||+.++.+...   ..|++||+.+++... +......+..+.|+|+++.+
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            567777643 3334455555568889999999999877543   479999998876433 33344455678999999877


Q ss_pred             EEe-eCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VSG-SFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +.. +.++  .|++||+.++.. ..+..+........|+|+++.|+..+. .+  .|.++|+.+++... +.. ......
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~-~~~~~~  325 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF-RGGYNA  325 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CCCCcc
Confidence            643 4443  588999987654 333344444456789999998876554 33  67888887765432 221 223345


Q ss_pred             EEEECCCCCEEEEEEcCC---eEEEEECCCcceEE
Q psy4393         201 FVKFSPNGKYILAATLDN---TLKLWDSKVVTPAI  232 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~  232 (247)
                      ...|+|+|++|+.++.++   .|.+||..+.....
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~  360 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV  360 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE
Confidence            678999999999988776   89999987755443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4227|consensus

Probab=99.50  E-value=9.4e-13  Score=101.67  Aligned_cols=167  Identities=18%  Similarity=0.305  Sum_probs=132.4

Q ss_pred             EEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC------ceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCC
Q psy4393          62 EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS------GKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDES  134 (247)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (247)
                      ++.+.+|.+.|.++.|+.++++|++|+.|..+++|.+..      .+++.... .|.+.|.|++|+-...++++|+.++.
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            345678889999999999999999999999999999853      23333332 24478999999999999999999999


Q ss_pred             EEEEECCCCeEEEeecC--CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee-c-cCCCCCeEEEEECCCCC-
Q psy4393         135 VRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-I-DDDNPPVSFVKFSPNGK-  209 (247)
Q Consensus       135 i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-~~~~~~v~~~~~s~~~~-  209 (247)
                      |.+.|+.+.+.+..+..  ..+.|..|..+|....|++.+.++.|.+||.+..+....+ . .........+-|+|-.. 
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999999988777642  2358999999999999999999999999999876522222 1 12234566788999764 


Q ss_pred             EEEEEEcCCeEEEEECCCc
Q psy4393         210 YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~  228 (247)
                      +|++.+..+-+-+||.+..
T Consensus       209 Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eEEeccccCCCCceeeccc
Confidence            6677788899999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3e-10  Score=93.05  Aligned_cols=198  Identities=15%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             CeEEEEECCCCCE-EEEEeC---CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE-cC--CCeEEEEECCCc
Q psy4393          29 AVSSVKFSPNGEW-LASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SD--DKTLKIWELSSG  101 (247)
Q Consensus        29 ~v~~~~~s~~~~~-l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--d~~i~v~d~~~~  101 (247)
                      ......|+|||+. ++..+.   +..|.++|..+++...... .........|+|||+.++.. +.  +..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999985 554333   3468888887776544433 44456678899999877543 33  357888898777


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCC-C--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC----
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-E--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD----  174 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  174 (247)
                      +.. .+...........|+|+|+.++..+.. +  .|.++|+.+++..+.... ...  ...|+|+|+.++.....    
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence            643 344333323345799999988776542 3  588888887765333221 111  24899999988766543    


Q ss_pred             -----CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCCcceEEEE
Q psy4393         175 -----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKVVTPAIIC  234 (247)
Q Consensus       175 -----g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~  234 (247)
                           ..|.+.|+.+++.. .+...  .......|+|||+.|+..+.++   .+.+.+++........
T Consensus       344 ~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             cCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence                 36888898877643 33222  1223578999999888776432   4777777665554443

>KOG0644|consensus

Probab=99.47  E-value=3.4e-14  Score=118.59  Aligned_cols=115  Identities=31%  Similarity=0.672  Sum_probs=108.1

Q ss_pred             EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe
Q psy4393          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (247)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (247)
                      +.+|...|.|..|...|.+++++++|..++||.+.++.++...++|.+.+..++.+....++++++.|..|++|-++.+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            45788899999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       145 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      ++..+..|.+.|++++|+|-.    +.+.||++++||.+
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            999999999999999999943    67789999999987

>KOG2321|consensus

Probab=99.47  E-value=5e-12  Score=101.88  Aligned_cols=196  Identities=17%  Similarity=0.283  Sum_probs=147.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec--
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG--  109 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--  109 (247)
                      .++++.-..-|+.++....|+-++++.|..+..+.....+++.+..++...+|++|+.+|.+..||.++...+..+..  
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            344443333344455556778888889998888888788899999999999999999999999999988665554432  


Q ss_pred             ----CC-----ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-cCCCCCeEEEEECCC--CCEEEEecCCCeE
Q psy4393         110 ----HS-----NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRD--GSLIVSSSYDGLC  177 (247)
Q Consensus       110 ----~~-----~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~dg~i  177 (247)
                          +.     ..|.++.|+.+|-.++.|..+|.+.+||++..+++..- ....-+|..+.|.+.  +..+++. ....+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~  296 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRIL  296 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHh
Confidence                22     23889999999999999999999999999998876542 233457888999775  3344443 45678


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++||-.+++.......  ...++.+++-|++-++.++-.++.+..|=.....|
T Consensus       297 kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             hhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence            9999999987765533  34578889999999999998888777775544443

>KOG1064|consensus

Probab=99.46  E-value=6.2e-13  Score=118.91  Aligned_cols=193  Identities=13%  Similarity=0.237  Sum_probs=147.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+...|.++.=+|...+.++|+.||.+++|.--.+..+..+. .....|+.+.|+.+|+.+..+..||.+.+|... .+.
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            456778888889999999999999999999866555444433 223679999999999999999999999999987 344


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEee---CCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ....+.|........|-.  ..+++++   .++.+.+||..-.. .-..-..|.+.++++++-|...+|++|+.+|.+++
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            445556665555555553  5566553   46789999975322 11122789999999999999999999999999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ||++..+..+++..          ++ ...++++|+..|.++||++..-..+
T Consensus      2363 ~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             eehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchh
Confidence            99998776655422          44 5678999999999999998875443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.7e-10  Score=95.53  Aligned_cols=179  Identities=13%  Similarity=0.144  Sum_probs=118.4

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.++|..... ...+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+|+|+.+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            36666665433 34454556678899999999998776543   468999998876533 33333344567899999988


Q ss_pred             EE-eeCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VS-GSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +. ...++  .|+++|+.+++. ..+..+........|+|||+.++..+. +|  .|.++|+.+++.......  .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~  334 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNA  334 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCcc
Confidence            74 34444  588889988764 334444445566789999998766553 33  577778877764332211  12223


Q ss_pred             EEEECCCCCEEEEEEcC-C--eEEEEECCCcceEEE
Q psy4393         201 FVKFSPNGKYILAATLD-N--TLKLWDSKVVTPAII  233 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~  233 (247)
                      ...|+|||++|+..+.+ +  .|.+||..++....+
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL  370 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence            46899999999887753 3  588899887665443

>KOG1354|consensus

Probab=99.45  E-value=8.4e-12  Score=94.88  Aligned_cols=209  Identities=22%  Similarity=0.404  Sum_probs=141.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----EEEEEecc------------cCCeEEEEECCCCC--EEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH------------KLGISDVAWSSDSR--LLVSG   87 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~   87 (247)
                      ..-|.++.|...|++||+|..+|.|.++.-....     ....+..|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999998654322     12222222            23577889998765  46777


Q ss_pred             cCCCeEEEEECCCceE--------------------EEEE----------------ecCCccEEEEEEcCCCCEEEEeeC
Q psy4393          88 SDDKTLKIWELSSGKC--------------------LKTL----------------KGHSNYVFCCNFNPQSNLIVSGSF  131 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~--------------------~~~~----------------~~~~~~v~~~~~~~~~~~l~~~~~  131 (247)
                      +.|.+|++|.+.....                    +..+                .+|.-.|.++.++.|+..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            7899999998753211                    0011                1355567888899998888775 4


Q ss_pred             CCCEEEEECCCCe-E--EEeecCCC-----CCeEEEEECCC-CCEEEEecCCCeEEEEeCCCcee------e--------
Q psy4393         132 DESVRIWDVRTGK-C--LKTLPAHS-----DPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC------L--------  188 (247)
Q Consensus       132 d~~i~v~d~~~~~-~--~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~------~--------  188 (247)
                      |=.|.+|++.... .  +..++.+.     .-|++..|+|. ...++-.+..|.|++-|++....      +        
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            6679999986432 1  22233321     35788889995 45677778899999999984321      0        


Q ss_pred             -eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC-CcceEEEEccC
Q psy4393         189 -KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK-VVTPAIICSTP  237 (247)
Q Consensus       189 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~  237 (247)
                       +.++..-...|..+.|+++|+|+++=+ --+|++||.+ ...|+.+++.+
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeeh
Confidence             011111224578899999999998764 2699999994 56787777654

>KOG4497|consensus

Probab=99.44  E-value=1.6e-10  Score=87.60  Aligned_cols=202  Identities=17%  Similarity=0.273  Sum_probs=132.7

Q ss_pred             ecCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC------------
Q psy4393          24 AGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD------------   90 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------   90 (247)
                      ..-..++.+++|||||+.++ +..-+-.|.+|.+.+.+.. -+.-....+..++|+|||++.+.++.-            
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence            34467899999999997665 5556778999998665432 223334456788899999887665421            


Q ss_pred             ------------------------CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE
Q psy4393          91 ------------------------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (247)
Q Consensus        91 ------------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (247)
                                              ..+.+||.--.-.+... .-.-.+..++|+|-+++++.|+.|+.+++.+--+.+..
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                    12334442111111111 11123667899999999999999998887653221110


Q ss_pred             ------------------------------------------------------------Eeec------CCCCCeEEEE
Q psy4393         147 ------------------------------------------------------------KTLP------AHSDPVSAVH  160 (247)
Q Consensus       147 ------------------------------------------------------------~~~~------~~~~~i~~~~  160 (247)
                                                                                  ..++      .....+.-++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence                                                                        0000      0011355689


Q ss_pred             ECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         161 FNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       161 ~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      |++|..++++-..  -..+.+||+...+....+..  ..+|....|+|....|+.++...++.+|......
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            9999998887653  25799999998775554443  3478999999999999999888899999876533

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=3.7e-09  Score=84.95  Aligned_cols=200  Identities=16%  Similarity=0.306  Sum_probs=130.0

Q ss_pred             CCCeEEEEECCCCCEEEEEe-CCCeEEEEecCC-CeEEEE---Ee----------cccCCeEEEEECCCCCEEEEEcC-C
Q psy4393          27 TKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYD-GKFEKT---IS----------GHKLGISDVAWSSDSRLLVSGSD-D   90 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-d   90 (247)
                      ......++++|++++|+++. .+|.+.++++.. +.....   +.          .......++.++|+++++++... .
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            34456789999999998876 478999999875 443332   11          11244788999999998876543 4


Q ss_pred             CeEEEEECCCce--EE--EEEe-cCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECC--CCeE--EEeecCC------CC
Q psy4393          91 KTLKIWELSSGK--CL--KTLK-GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR--TGKC--LKTLPAH------SD  154 (247)
Q Consensus        91 ~~i~v~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~--~~~~~~~------~~  154 (247)
                      ..|.+|++....  ..  ..+. .....-+.+.|+|++++++...+ ++.|.++++.  .+..  +..+...      ..
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            579999987654  21  2222 22334678999999998877654 6679999887  4432  2222211      12


Q ss_pred             CeEEEEECCCCCEEEEec-CCCeEEEEeCC--Ccee--eeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCC
Q psy4393         155 PVSAVHFNRDGSLIVSSS-YDGLCRIWDTA--SGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKV  227 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~--~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~  227 (247)
                      ....++++|||++|+++. ..+.|.+|++.  +++.  +...... ...-..++++|+|++|+++.. ++.|.+|+.+.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            567899999999988765 45689999983  2332  2222222 223477999999999998875 57999997653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.5e-10  Score=94.63  Aligned_cols=178  Identities=15%  Similarity=0.141  Sum_probs=114.9

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .+.++|..... ...+......+....|+|||+.|+..+.+   ..|.++|+.+++... +...........|+|+++.+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            56666654433 34444556678889999999998876432   368889998776432 32222333467899999987


Q ss_pred             EE-eeCCCC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VS-GSFDES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~-~~~d~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +. ...++.  |+++|+.+++. ..+..+........|+|||+.++..+. ++  .+.++|+.+++........  ....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCc
Confidence            65 455564  77889887754 344444445567899999998776543 33  5777788777643322111  1123


Q ss_pred             EEEECCCCCEEEEEEcC-C--eEEEEECCCcceEE
Q psy4393         201 FVKFSPNGKYILAATLD-N--TLKLWDSKVVTPAI  232 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~  232 (247)
                      ..+|+|||++|+..+.+ +  .|.++|..++.+..
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence            46899999999887653 4  56667877765543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.42  E-value=3.5e-09  Score=83.84  Aligned_cols=198  Identities=12%  Similarity=0.135  Sum_probs=136.0

Q ss_pred             EECCCCCEEEEEeC----------CCeEEEEecCCCeEEEEEecccC-------CeEEEEECCCCCEEEEEc-C-CCeEE
Q psy4393          34 KFSPNGEWLASSSA----------DKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS-D-DKTLK   94 (247)
Q Consensus        34 ~~s~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-d~~i~   94 (247)
                      .++|||+.|+.+..          ++.|.+||..+.+....+.....       ....++++|||++++... . +..+.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            39999998876654          78999999999988877753211       233688999999988765 3 68899


Q ss_pred             EEECCCceEEEEEecCC------------------c-------------cEEEEE--------------EcC-CCCEEEE
Q psy4393          95 IWELSSGKCLKTLKGHS------------------N-------------YVFCCN--------------FNP-QSNLIVS  128 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~------------------~-------------~v~~~~--------------~~~-~~~~l~~  128 (247)
                      +.|+.+++.+..+....                  +             ......              +.+ ++..+..
T Consensus       132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            99998876554432100                  0             000101              122 5666655


Q ss_pred             eeCCCCEEEEECCCC-----eEEEeecC-------CCCCeEEEEECCCCCEEEEec----------CCCeEEEEeCCCce
Q psy4393         129 GSFDESVRIWDVRTG-----KCLKTLPA-------HSDPVSAVHFNRDGSLIVSSS----------YDGLCRIWDTASGQ  186 (247)
Q Consensus       129 ~~~d~~i~v~d~~~~-----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~  186 (247)
                      ..+ |.|++.|+...     ..+..+..       ..+.+..++++|+++.+++..          ..+.|.++|..+++
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            554 89999996432     22222211       123344589999999888742          12479999999999


Q ss_pred             eeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~  234 (247)
                      .+..+...  .....++++||++ +|++.. .++.|.++|..+.+.+..+
T Consensus       291 vi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       291 RLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            88876544  3567899999999 877666 5789999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190|consensus

Probab=99.42  E-value=6.9e-13  Score=106.73  Aligned_cols=203  Identities=20%  Similarity=0.392  Sum_probs=145.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-------CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      ..+.||+..|..++--.+.+-+++++.|++|++|.+..       ..++.++..|..+|.++.|-.+-+.+++  .||.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            45568999999888766777788999999999998752       2356667789999999999988877755  48899


Q ss_pred             EEEECCCceEEEEEe-----cCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEeecCC-----CCCeEEEEEC
Q psy4393          94 KIWELSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFN  162 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~  162 (247)
                      ++||.--+..+..+.     +..+.|.|+. +-+..+++.| +...+++++|.+.......++..     ..-+.+++..
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999976665443221     1122343332 2234444444 77889999999988766555432     3457899999


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE-EECCCc
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL-WDSKVV  228 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v-wd~~~~  228 (247)
                      +.|++++++-..|.+.+.|.++|+.+..+...+- ....++ .|..+.|+....|..+.| |-.-++
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            9999999999999999999999987776543221 112222 466677888778888888 765443

>KOG1240|consensus

Probab=99.39  E-value=4.1e-11  Score=104.26  Aligned_cols=181  Identities=22%  Similarity=0.273  Sum_probs=127.2

Q ss_pred             CCeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCCc-------eEEEEEecCCccEEEEEEcCCCCEEEEe
Q psy4393          58 DGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSG  129 (247)
Q Consensus        58 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  129 (247)
                      .|..+..+..|...+..++.++. +.++++|+.||+|++|+.+.-       +...+.......+.++...+.+..+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            34556666777888888888765 499999999999999998642       1112222245678888888999999999


Q ss_pred             eCCCCEEEEECCCC--e-----EEEeecC-CCCCeEEE-EECC-CCC-EEEEecCCCeEEEEeCCCceeeeeec-cCCCC
Q psy4393         130 SFDESVRIWDVRTG--K-----CLKTLPA-HSDPVSAV-HFNR-DGS-LIVSSSYDGLCRIWDTASGQCLKTLI-DDDNP  197 (247)
Q Consensus       130 ~~d~~i~v~d~~~~--~-----~~~~~~~-~~~~i~~~-~~~~-~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~  197 (247)
                      +.||.|++.++...  +     ....... ..+.+..| ++.. .+. .++.+..-+.+..||++.....-++. ....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999988652  1     1111111 12333333 3332 233 56777788899999998754332222 22346


Q ss_pred             CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      .|+.++.+|.+.+++.|+..|.+.+||++-..|+..-..|.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~ 1237 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA 1237 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc
Confidence            78999999999999999999999999999888877654443

>KOG2315|consensus

Probab=99.39  E-value=6e-10  Score=89.80  Aligned_cols=193  Identities=21%  Similarity=0.379  Sum_probs=130.8

Q ss_pred             CCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEecCCCeEE-----EEEecccCCeEEEEECCCCCEE-EEEcC--C
Q psy4393          26 HTKAVSSVKFSPNGE--WLAS-----SSADKLIKIWGAYDGKFE-----KTISGHKLGISDVAWSSDSRLL-VSGSD--D   90 (247)
Q Consensus        26 h~~~v~~~~~s~~~~--~l~~-----~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l-~~~~~--d   90 (247)
                      |...|+.+.+||.+.  .+|+     .+.-..|++|.......-     +.+.  ...=-.+.|++-|.-| +.++.  |
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeec
Confidence            567899999999754  4443     345668999976522111     1121  1112346788866543 22221  2


Q ss_pred             ---------CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe--eCCCCEEEEECCCCeEEEeecCCCCCeEEE
Q psy4393          91 ---------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAV  159 (247)
Q Consensus        91 ---------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~  159 (247)
                               ..+++++++...+.-.+. ..++|.++.|+|++..++.+  ---..+.+||++. ..+..+  .+++-.++
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~  317 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTA  317 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccce
Confidence                     368888887434333332 46789999999999877654  4455789999974 444444  45677899


Q ss_pred             EECCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc------CCeEEEEECCC
Q psy4393         160 HFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDSKV  227 (247)
Q Consensus       160 ~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~  227 (247)
                      -|+|.|++++.++.+   |.+.+||+.+.+.+..+..   ..-+.+.|+|||+++++++.      |+-++||+...
T Consensus       318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            999999999887754   7999999998776655432   23356899999999999875      78899998643

>KOG1334|consensus

Probab=99.38  E-value=8.1e-12  Score=98.80  Aligned_cols=211  Identities=22%  Similarity=0.305  Sum_probs=159.1

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-ecccCCeEEEEECC--CCCEEEEEcCCCeE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSRLLVSGSDDKTL   93 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i   93 (247)
                      ..+...|..|.+-|..+-|...|..|++++.|..|.+||...+.....+ .+|...|..-.|-|  +.+.|++++.||.+
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            4455677889999999999999999999999999999998776655544 56777777777877  35679999999999


Q ss_pred             EEEECCCceE---EEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee---cCCCC---CeEEEEECC
Q psy4393          94 KIWELSSGKC---LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL---PAHSD---PVSAVHFNR  163 (247)
Q Consensus        94 ~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~---~i~~~~~~~  163 (247)
                      ++=.+.....   .+.+..|.+.|..++.-|+. ..|.+++.|+.+.=+|++.+.+-..+   ..+..   ....++.+|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            9876543221   33455678889999988865 56888999999999999877543222   22222   457788888


Q ss_pred             CCC-EEEEecCCCeEEEEeCCCceee------ee-----eccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         164 DGS-LIVSSSYDGLCRIWDTASGQCL------KT-----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       164 ~~~-~l~~~~~dg~i~v~d~~~~~~~------~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ... .+++++.|..+++||.+.-...      ..     +.......|++++++.++.-|.++-.|-.|.+|....
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            665 7899999999999998753221      22     2223445789999998888888888899999996543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.5e-10  Score=93.18  Aligned_cols=178  Identities=17%  Similarity=0.186  Sum_probs=108.7

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCC----eEEEEecCCC---eEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEE--
Q psy4393          28 KAVSSVKFSPNGEWLASSS-ADK----LIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIW--   96 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~-~dg----~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~--   96 (247)
                      +.....+|+|||+.|+... .+|    .+..|+...+   ................+|+|||+.|+..+ .++...+|  
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            3445688999999887644 223    2334665442   22222322223346789999999877665 45644444  


Q ss_pred             ECCC-ceEEEEEecCCccEEEEEEcCCCCEEEEeeCC---CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393          97 ELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        97 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ++.. +.....+......+....|+|+|+.++....+   ..|.+||+.+++.. .+......+....|+|||+.|+..+
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEE
Confidence            4432 22234444444456678899999988876543   36899999888653 3333334567789999999876543


Q ss_pred             C---CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393         173 Y---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       173 ~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~  208 (247)
                      .   ...+.++|+.+++..... . ....+...+|+|-.
T Consensus       390 ~~~g~~~L~~vdl~~g~~~~Lt-~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        390 GNSNESELYLISLITKKTRKIV-I-GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCCceEEEEECCCCCEEEee-c-CCCcccCceecCCC
Confidence            2   346888898877643322 2 22334567788753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.36  E-value=3.2e-09  Score=96.07  Aligned_cols=199  Identities=15%  Similarity=0.216  Sum_probs=132.3

Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEecc-----------------cCCeEEEEECC-CCCEEEEEcCC
Q psy4393          30 VSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-----------------KLGISDVAWSS-DSRLLVSGSDD   90 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d   90 (247)
                      ...++++++++.|+.+. .++.|+++|..++.. ..+.+.                 -..-..++++| ++..+++...+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            46788888887665554 456788888766543 222110                 11235789999 56666777788


Q ss_pred             CeEEEEECCCceEEEEEecC---------------CccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEee-----
Q psy4393          91 KTLKIWELSSGKCLKTLKGH---------------SNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTL-----  149 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~-----  149 (247)
                      +.|++||..++... .+.+.               ......++++|++. ++++...++.|++||+.++......     
T Consensus       705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            99999998776432 22110               11234688999988 4455566789999999876432111     


Q ss_pred             --------cCC--------CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCCCeEE
Q psy4393         150 --------PAH--------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSF  201 (247)
Q Consensus       150 --------~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~  201 (247)
                              ...        -.....++++++|.++++-..++.|++||..++.........            .-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                    000        012357889999998888888999999999877644322111            0012457


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         202 VKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       202 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++++++|+.+++-+.+++|++||.++...
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            89999999888888899999999988654

>KOG0974|consensus

Probab=99.36  E-value=1.5e-11  Score=105.08  Aligned_cols=148  Identities=27%  Similarity=0.432  Sum_probs=124.2

Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE-EEecCCc
Q psy4393          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLKGHSN  112 (247)
Q Consensus        34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~  112 (247)
                      .++++.-++++|+.-+.|.+|.....+....+.+|.+.+.++.|+.||.++++.++|..+++|++.+.+... ..-+|..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            356666688899999999999986433334688999999999999999999999999999999999987655 5567999


Q ss_pred             cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      +++.+++.|.  .+++++.|-+.++|+.. +..+..+..|. ..+..++..++...+++++.||.+++||+..
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999997  89999999999999765 34444666654 4588899999888999999999999998754

>KOG1334|consensus

Probab=99.33  E-value=1.8e-11  Score=96.86  Aligned_cols=207  Identities=16%  Similarity=0.287  Sum_probs=150.6

Q ss_pred             EEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEe---ccc---CCeEEEEECCCCC-EEEEEcCCCe
Q psy4393          21 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS---GHK---LGISDVAWSSDSR-LLVSGSDDKT   92 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~-~l~~~~~d~~   92 (247)
                      ..+..|.++|..++..|+.. .+.+++.|+.+.=.|+........+.   .+.   ....+++..|... .+++++.|..
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            34567999999999999765 57889999999988876654333221   122   2567888888544 7899999999


Q ss_pred             EEEEECCCceE------EEEEe------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC------------eEEE-
Q psy4393          93 LKIWELSSGKC------LKTLK------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG------------KCLK-  147 (247)
Q Consensus        93 i~v~d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------------~~~~-  147 (247)
                      +++||.+.-..      +..+.      ...-.|.++.++.++.-+.+...|-.|++|.-..+            ..++ 
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~  385 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR  385 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence            99999764221      11111      12335889999988888888888889999954322            1122 


Q ss_pred             eecCCCCC--eEEEE-ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         148 TLPAHSDP--VSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       148 ~~~~~~~~--i~~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ..++|...  |..+- |-|...++++|+.-|.|.+|+-.+++.+..+... ...|+||.-+|.-..||+++.|.-|+||.
T Consensus       386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCCCCCchhhccCCccceeeec
Confidence            25666543  44443 4578899999999999999999988876654443 34899999999999999999999999998


Q ss_pred             CCCc
Q psy4393         225 SKVV  228 (247)
Q Consensus       225 ~~~~  228 (247)
                      ....
T Consensus       465 P~~~  468 (559)
T KOG1334|consen  465 PLTA  468 (559)
T ss_pred             CCcc
Confidence            7543

>KOG0280|consensus

Probab=99.32  E-value=9.2e-10  Score=82.27  Aligned_cols=185  Identities=15%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             CCCeEEEEecCCCeEEE---EEecccCCeEEEEECC---CCC-EEEEEcCCCeEEEEECCCceEEEEEecCC------cc
Q psy4393          47 ADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSS---DSR-LLVSGSDDKTLKIWELSSGKCLKTLKGHS------NY  113 (247)
Q Consensus        47 ~dg~v~iw~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------~~  113 (247)
                      ..|.+.+|++.+.+...   ........+..+.|+.   +|. .++-+...|.|.++...-......+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            35678888876544322   2223345577788863   455 45667778899988765444333333221      12


Q ss_pred             EEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEeecCCCCCeEEEEECC-CCCEEEEecCCCeEEEEeCCC-ceeee
Q psy4393         114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS-GQCLK  189 (247)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~  189 (247)
                      ..++.|++.+..++++..+|.+.+.+......  ++.++.|+-.+....|+. +.+++++|+.|+.+.-||++. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45678999999999999999998665544433  346788888888888875 346889999999999999993 33333


Q ss_pred             eeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCC-cceE
Q psy4393         190 TLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKV-VTPA  231 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~  231 (247)
                      .-...+...|.++.-+| .+.++++|+.|-.|++||.+. ++|+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence            22233456677777665 577999999999999999995 4554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=4.4e-08  Score=78.78  Aligned_cols=199  Identities=14%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCeEEEEecCC--CeEEE--EEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEEC
Q psy4393          28 KAVSSVKFSPNGEWLASSSA----DKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL   98 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~----dg~v~iw~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~   98 (247)
                      ....-++++|++++|+++.+    ++.|..|.+..  +....  ...........++++|++++++++. .+|.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44566889999999988766    56898888765  33322  2332334456789999999988876 4889999999


Q ss_pred             CC-ceEEEE---Ee----------cCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCe--E--EEeec-CCCCCeEE
Q psy4393          99 SS-GKCLKT---LK----------GHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGK--C--LKTLP-AHSDPVSA  158 (247)
Q Consensus        99 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~--~--~~~~~-~~~~~i~~  158 (247)
                      .. +.....   ++          .......++.++|+++++++.. ....|.+|++....  .  ...+. .....-+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            86 332221   11          1234567899999999887754 34579999987654  2  12222 22344678


Q ss_pred             EEECCCCCEEEEe-cCCCeEEEEeCC--Ccee--eeeecc---C--CCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         159 VHFNRDGSLIVSS-SYDGLCRIWDTA--SGQC--LKTLID---D--DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       159 ~~~~~~~~~l~~~-~~dg~i~v~d~~--~~~~--~~~~~~---~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      +.|+|+++++++. ..++.|.+|++.  +++.  ......   .  .......++++|||++|+++. ..+.|.+|+.+
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            9999999987665 456789999887  4332  222211   1  112467899999999998876 46799999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409|consensus

Probab=99.31  E-value=1.8e-10  Score=87.76  Aligned_cols=211  Identities=20%  Similarity=0.333  Sum_probs=146.9

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEE-ecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +-..+.||...|+....-|-.+-+++.+.|.++++|--.+ ++.-..+ ..-..+++++.+.++...|+++-.+|.+.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            3344678999999999988888899999999999995433 2222222 2235668899999999999999889988776


Q ss_pred             ECCC----ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC---------------------------------------
Q psy4393          97 ELSS----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---------------------------------------  133 (247)
Q Consensus        97 d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------------------  133 (247)
                      .+..    ....+....|...+..+.|+-....+++.+.|.                                       
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g  175 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG  175 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence            5432    222233334444454444444334444333332                                       


Q ss_pred             CEEEEEC--CCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEE
Q psy4393         134 SVRIWDV--RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       134 ~i~v~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  211 (247)
                      .+....+  ..-..+..+.+|.+++.+++|.|....|++|..|..+.+||+...+........+...|..+..-+.-+.|
T Consensus       176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l  255 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL  255 (404)
T ss_pred             ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence            2221111  11234566788899999999999999999999999999999987665555555556667777777777899


Q ss_pred             EEEEcCCeEEEEECCCcc
Q psy4393         212 LAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       212 ~~~~~dg~i~vwd~~~~~  229 (247)
                      .+++.||.|.+||.+.+.
T Consensus       256 ~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeccCCCeEEEEecccee
Confidence            999999999999987653

>KOG0280|consensus

Probab=99.30  E-value=1.3e-09  Score=81.48  Aligned_cols=179  Identities=19%  Similarity=0.251  Sum_probs=124.3

Q ss_pred             CCCeEEEEECC---CCC-EEEEEeCCCeEEEEecCCCeEEEEEec---ccC---CeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          27 TKAVSSVKFSP---NGE-WLASSSADKLIKIWGAYDGKFEKTISG---HKL---GISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        27 ~~~v~~~~~s~---~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +..+..+.|..   +|. .++-+...|.|.++..........+.+   ...   ...++.|++.+..+++...+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34455566642   444 345567788898887654333322222   111   24567899999999999999998866


Q ss_pred             ECCCceE--EEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCC-CeEEEe-ecCCCCCeEEEEECC-CCCEEEE
Q psy4393          97 ELSSGKC--LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRT-GKCLKT-LPAHSDPVSAVHFNR-DGSLIVS  170 (247)
Q Consensus        97 d~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~-~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~  170 (247)
                      +......  ++..+.|....+.+.|+. +.+++++|+.|+.+..||+|. ++.+.. .+.|...|.++.-+| .+.++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            6544432  336788888888888865 447899999999999999994 333433 567777888887776 5779999


Q ss_pred             ecCCCeEEEEeCCC-ceeeeeeccCCCCCeEEEEECCC
Q psy4393         171 SSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       171 ~~~dg~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                      |++|..|++||.++ ++++..  ....+.|..+.++|.
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~--~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFK--AKVGGGVWRIKHHPE  264 (339)
T ss_pred             eccccceeeeehhcccCcccc--CccccceEEEEecch
Confidence            99999999999984 444432  233467788888875

>KOG4547|consensus

Probab=99.29  E-value=1.5e-09  Score=88.05  Aligned_cols=142  Identities=15%  Similarity=0.264  Sum_probs=121.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEE
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC  117 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  117 (247)
                      ..++-|...|.|.+|+...++....+.  .|.++|.++.++.+-..|.+++.|+.+..|+.......+..+.....+..+
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            357778889999999998888877765  678889999999888889999999999999999999999999888889999


Q ss_pred             EEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC-----CCEEEEe-cCCCeEEEEeCC
Q psy4393         118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-----GSLIVSS-SYDGLCRIWDTA  183 (247)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~v~d~~  183 (247)
                      +.+||+..+++++  +.|++||+.+++.+..|..|.++|+++.|.-+     |.+++++ ..+..+.+|-.+
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999999999875  68999999999999999999999999999766     5665543 345556666443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.25  E-value=9.7e-09  Score=81.75  Aligned_cols=172  Identities=17%  Similarity=0.262  Sum_probs=130.2

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC-eEEEEECCCceEEEEEecCCccEEE
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK-TLKIWELSSGKCLKTLKGHSNYVFC  116 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~v~~  116 (247)
                      +|.+++..++ |...+.+...+...+  -++..+|.-..+.-+++-++.|..|| .+-++|..+++. +.+...-+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            6778877664 677777765554332  24566688777877777888899998 899999988764 445556778999


Q ss_pred             EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC----eEEEEeCCCceeeeeec
Q psy4393         117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQCLKTLI  192 (247)
Q Consensus       117 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~  192 (247)
                      +..+++|+.++.+.....+.+.|+.++.....-+...+-|+...|+|+++++|-+--+|    .|++||+.+++......
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            99999999999999889999999999986555556667899999999999998776555    79999999887543322


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEE
Q psy4393         193 DDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       193 ~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ..  +-=.+-+|+||+++|..-+
T Consensus       487 ~t--a~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         487 PT--AYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             Cc--ccccCcccCCCCcEEEEEe
Confidence            11  1112357999999987654

>KOG1354|consensus

Probab=99.23  E-value=6.9e-10  Score=84.67  Aligned_cols=200  Identities=21%  Similarity=0.403  Sum_probs=134.1

Q ss_pred             CCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCeEEE-----------------------------------EE-ecc
Q psy4393          27 TKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEK-----------------------------------TI-SGH   68 (247)
Q Consensus        27 ~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~-----------------------------------~~-~~~   68 (247)
                      ...|..+.|.++++  .++..+.|.++++|-+.......                                   .+ ..|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            45688999998766  45667789999999764321100                                   00 135


Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE---EEEEecC-----CccEEEEEEcCC-CCEEEEeeCCCCEEEEE
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC---LKTLKGH-----SNYVFCCNFNPQ-SNLIVSGSFDESVRIWD  139 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d  139 (247)
                      ...|.++.++.|.+.++++ +|-.|.+|+++-...   +-.++.+     ...|.+..|+|. .+.++..+..|.|++.|
T Consensus       164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            5568899999999988877 577899999864321   1122222     234677889884 57888899999999999


Q ss_pred             CCCCeE------EEeecCC----------CCCeEEEEECCCCCEEEEecCCCeEEEEeC-CCceeeeeeccCC-------
Q psy4393         140 VRTGKC------LKTLPAH----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-ASGQCLKTLIDDD-------  195 (247)
Q Consensus       140 ~~~~~~------~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~-------  195 (247)
                      +|....      +...+..          -..|..+.|+++|+++++-. --++++||+ ...++...+..+.       
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            985321      1111111          12578899999999998653 257999998 3444443332111       


Q ss_pred             ----CCCe---EEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         196 ----NPPV---SFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       196 ----~~~v---~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                          ...|   -.++|+.++.++++|+..+.+++|+...+
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                1111   34789999999999999999999995443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.21  E-value=1.5e-07  Score=72.12  Aligned_cols=198  Identities=18%  Similarity=0.153  Sum_probs=127.2

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEEC-CCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          32 SVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        32 ~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      +++|.+ ++.++++--..+.|..|+..++.... +....  ...+++. +++.++ .+...+ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEEEeec
Confidence            568988 66677776678899999987765433 22222  5666777 665544 444444 45569888764433332


Q ss_pred             -----CCccEEEEEEcCCCCEEEEeeCC--------CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE-EecCCC
Q psy4393         110 -----HSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG  175 (247)
Q Consensus       110 -----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  175 (247)
                           .......+.++|+|++.++....        |.+..++.. ++..... ..-...+.++|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence                 33457789999999987776543        457777776 4432222 2234568899999998776 556778


Q ss_pred             eEEEEeCCCce--e--eeeeccCCC--CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         176 LCRIWDTASGQ--C--LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       176 ~i~v~d~~~~~--~--~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .|..|++....  .  ...+.....  ...-.++++.+|++.++.-..+.|.++|.+ ++.+..+..|
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            89999875321  1  122221111  235679999999988887789999999988 7777777776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041|consensus

Probab=99.20  E-value=3.1e-10  Score=94.24  Aligned_cols=200  Identities=17%  Similarity=0.289  Sum_probs=138.7

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      ..+..+..++.||.+.|.-+.|+.+.+.|-+...+|.|.+|-+..+.......  ....-|.+++|..||..|+..-.||
T Consensus        58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG  137 (1189)
T KOG2041|consen   58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG  137 (1189)
T ss_pred             ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC
Confidence            44567788899999999999999999999999999999999987765432221  2344588999999999999999999


Q ss_pred             eEEEEECCCceEE-EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-------E-EE---eecCCCCCeEEE
Q psy4393          92 TLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-------C-LK---TLPAHSDPVSAV  159 (247)
Q Consensus        92 ~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-------~-~~---~~~~~~~~i~~~  159 (247)
                      .|.+=.+...... +.+++  .....+.|++|...+..+-.+|.++++|.+..-       + +.   .+......+..+
T Consensus       138 avIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i  215 (1189)
T KOG2041|consen  138 AVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI  215 (1189)
T ss_pred             CEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence            9887666532211 12222  223467899999999989899999999976421       1 00   011111224444


Q ss_pred             EE--------CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         160 HF--------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       160 ~~--------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                      .|        -|+...|+++..+|.+.+-.-.+-.....+ .. .-.+....|+++|..|+.++.|
T Consensus       216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~-dt-gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV-DT-GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE-ec-ccEeecceecCCCcEEEEccCc
Confidence            44        357889999999998877644332222111 11 1345678999999999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=7.2e-08  Score=79.19  Aligned_cols=175  Identities=15%  Similarity=0.086  Sum_probs=110.2

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-EEEEcC---CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL  125 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  125 (247)
                      .|.+-|.. +...+.+.... ......|+|||+. ++..+.   +..|.++|+.+++.... ....+......|+|+|+.
T Consensus       170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCE
Confidence            44444443 33233333333 6778999999985 554333   35799999988765443 334444556789999987


Q ss_pred             EEEe-eCC--CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCe
Q psy4393         126 IVSG-SFD--ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       126 l~~~-~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                      ++.. +.+  ..|.++|+.++.. ..+..+........|+|||+.++..+. .+  .|.+.|+.+++..+...... .  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--
Confidence            7654 323  4688889877753 344433333344589999987766553 33  67888888776543322211 1  


Q ss_pred             EEEEECCCCCEEEEEEcC---------CeEEEEECCCcceEE
Q psy4393         200 SFVKFSPNGKYILAATLD---------NTLKLWDSKVVTPAI  232 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~  232 (247)
                       ...|+|||++|+.....         ..|.+.|........
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~  363 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR  363 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence             24899999999887653         368888887766543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.4e-07  Score=72.72  Aligned_cols=197  Identities=13%  Similarity=0.265  Sum_probs=129.0

Q ss_pred             EEEEECCCCCEEEEEeCC-CeEEEEecCC-CeEEEE--EecccCC----------eEEEEECCCCCEEEEEcC-CCeEEE
Q psy4393          31 SSVKFSPNGEWLASSSAD-KLIKIWGAYD-GKFEKT--ISGHKLG----------ISDVAWSSDSRLLVSGSD-DKTLKI   95 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~d-g~v~iw~~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~v   95 (247)
                      +-++++++|++|+++... |.|.++-+.. |.....  ...|..+          +....+.|+++++++... .-.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            667888888888887654 6788887743 332221  2223333          788899999999887753 236889


Q ss_pred             EECCCceEEE----EEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCC-eEEEeecC---------CCCCeEEEE
Q psy4393          96 WELSSGKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTG-KCLKTLPA---------HSDPVSAVH  160 (247)
Q Consensus        96 ~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~~~~~~~~---------~~~~i~~~~  160 (247)
                      |++..+....    .++ ....-+.+.|+|++++.+..++ +++|-+|..... ..+..++.         ......++.
T Consensus       172 y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         172 YDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9998765332    222 2233568899999999887664 788999988763 22222221         234567899


Q ss_pred             ECCCCCEEEEecC-CCeEEEEeCCC--ceee-eeeccCCCCCeEEEEECCCCCEEEEEEcC-CeEEEEECCCc
Q psy4393         161 FNRDGSLIVSSSY-DGLCRIWDTAS--GQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDSKVV  228 (247)
Q Consensus       161 ~~~~~~~l~~~~~-dg~i~v~d~~~--~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~  228 (247)
                      +++||++|+++.. ...|.+|.+..  ++.. ......+...-....|+++|++|+++.++ ..|.+|..+..
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            9999999988753 23677776543  3321 11112222223567899999999999876 47999976544

>KOG1409|consensus

Probab=99.19  E-value=5.4e-09  Score=79.85  Aligned_cols=158  Identities=22%  Similarity=0.416  Sum_probs=113.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEE--------
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK--------   94 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--------   94 (247)
                      ..+++++.+.+....|+.|-.+|.+.-+....    ....+....|...+..+.|+.....+++++.|..+.        
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            47789999999999999999999998876532    122233345566666666666555666555543321        


Q ss_pred             -------------------------------EEEC--CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC
Q psy4393          95 -------------------------------IWEL--SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus        95 -------------------------------v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                                                     +..+  ..-..+..+.+|.+.+.+..|.+...++.+|..|..+.+||+-
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence                                           1111  1112345567888999999999999999999999999999997


Q ss_pred             CCeE-EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         142 TGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       142 ~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ..+- ......|...+..+...+.-+.+.+++.||.|.+||...
T Consensus       228 g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  228 GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            5443 345667777788877777778899999999999998764

>KOG4714|consensus

Probab=99.18  E-value=4e-10  Score=82.84  Aligned_cols=159  Identities=19%  Similarity=0.232  Sum_probs=99.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccCCeEEEEECCCCCEEEEEcCCC------eEEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDK------TLKIWE   97 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~v~d   97 (247)
                      .|.++-.+-+.+-.++.+++++.||.+.+.+.+.-. ....+......-.+......++.+.++ .-|      ..+.|+
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~-~~g~~n~~d~~~a~~  165 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSG-GCGNWNAQDNFYANT  165 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecC-CcceEeeccceeeec
Confidence            455444444455556778999999999999875411 111111111111222333444544433 223      334455


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEE-EeecCCCCCeEEEEECC-CCCEEEEecCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNR-DGSLIVSSSYD  174 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  174 (247)
                      ++..+....-+.....|.+++-+|. .+++++|+.||.+.+||.+..... ..+++|+.++..+.|+| ++..|+++++|
T Consensus       166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            5433222111112233778888884 456778889999999999987543 34678999999999999 56789999999


Q ss_pred             CeEEEEeCCC
Q psy4393         175 GLCRIWDTAS  184 (247)
Q Consensus       175 g~i~v~d~~~  184 (247)
                      |.+.-||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999875

>KOG1275|consensus

Probab=99.17  E-value=2.2e-09  Score=91.28  Aligned_cols=178  Identities=19%  Similarity=0.286  Sum_probs=130.0

Q ss_pred             EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC
Q psy4393          42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP  121 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  121 (247)
                      ++-|+-...+..+|..+.+..+...-...+|.-+  ..+++.+.+|...|+|.+-|.++.+.++++.+|.+.+..  |+-
T Consensus       150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv  225 (1118)
T KOG1275|consen  150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDV  225 (1118)
T ss_pred             eeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eec
Confidence            4444444555566665555444443333345433  446788999999999999999999999999999998865  566


Q ss_pred             CCCEEEEeeC---------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeC---CCceee
Q psy4393         122 QSNLIVSGSF---------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDT---ASGQCL  188 (247)
Q Consensus       122 ~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~---~~~~~~  188 (247)
                      .|+++++++.         |..|+|||+|.-+.+..+..+.++ .-+.|+|.- ..+++++..|+..+.|.   .+...-
T Consensus       226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence            7899999875         445899999988777666665554 345777853 46888899999999983   333222


Q ss_pred             eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       189 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ..........+..+.++++++.++.|..+|.|.+|-
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            222344455688999999999999999999999997

>KOG3914|consensus

Probab=99.16  E-value=8.6e-10  Score=85.54  Aligned_cols=160  Identities=19%  Similarity=0.328  Sum_probs=110.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeE---EEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceE
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKC  103 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~  103 (247)
                      +.....++.+++||.+..+....+++......   ..........-+.+.+..+......+...   ..+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44556778889999888777766666543322   11111222334455555554544444444   4455555544333


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                       ..+-+|.+.+..++++||.++++++..|..|++-....--.+..+- +|...|..++..++. .|++++.|+++++||.
T Consensus       145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence             3455788889999999999999999999999998876655555544 588899999987654 5899999999999999


Q ss_pred             CCceeeeee
Q psy4393         183 ASGQCLKTL  191 (247)
Q Consensus       183 ~~~~~~~~~  191 (247)
                      .+++.+..+
T Consensus       223 ~sgk~L~t~  231 (390)
T KOG3914|consen  223 TSGKLLDTC  231 (390)
T ss_pred             ccCCccccc
Confidence            999876443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=1.2e-07  Score=75.72  Aligned_cols=120  Identities=20%  Similarity=0.252  Sum_probs=98.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCC-eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      +|.+.|.=..+.-+++.++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|+.++++.....+.+.|+.++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            5677788888888888889999998 899999877654 44455567799999999999999999889999999999986


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCC----CEEEEECCCCeE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKC  145 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~  145 (247)
                      ...-+...+.|....|+|++.++|.+--+|    .|+++|+..++.
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            554455567789999999999999887665    588999876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.15  E-value=1.5e-07  Score=70.59  Aligned_cols=198  Identities=17%  Similarity=0.281  Sum_probs=123.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCe--EEE--EEeccc-CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGK--FEK--TISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ++.+.+|+.||.- .|..|.|....+.-  ...  .+.... ..=+.++|+||+..+|.+...|+|+++|+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            4667899988874 57788888765431  112  222222 235678999999999999999999999987533 2233


Q ss_pred             ecC-------CccEEEEEEcCCC------CEEEEeeCCCCEEEEECCCC-----eEEE--eecC-CCCCeEEEEECCCCC
Q psy4393         108 KGH-------SNYVFCCNFNPQS------NLIVSGSFDESVRIWDVRTG-----KCLK--TLPA-HSDPVSAVHFNRDGS  166 (247)
Q Consensus       108 ~~~-------~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~~-----~~~~--~~~~-~~~~i~~~~~~~~~~  166 (247)
                      ...       ...|..+.|.+..      ..++.-.-.|.++=|-+..+     +...  .+.. +...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            211       2345555554321      23444455666665544221     2222  2333 356899999999988


Q ss_pred             EEEEecCC----C-------eEEEEeCCCceeeee--------------------e--------ccCCCCCeEEEEECCC
Q psy4393         167 LIVSSSYD----G-------LCRIWDTASGQCLKT--------------------L--------IDDDNPPVSFVKFSPN  207 (247)
Q Consensus       167 ~l~~~~~d----g-------~i~v~d~~~~~~~~~--------------------~--------~~~~~~~v~~~~~s~~  207 (247)
                      +|++|+..    +       -+..|.+-++.+...                    +        .......|..+..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88877632    1       255665543211000                    0        1123456778999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         208 GKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       208 ~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      |+.||+...+|.|.+|++-...++.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhc
Confidence            9999999999999999987655443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=2.6e-08  Score=88.86  Aligned_cols=195  Identities=18%  Similarity=0.317  Sum_probs=127.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecC------------C-----------CeEEEEEec----------------
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY------------D-----------GKFEKTISG----------------   67 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~------------~-----------~~~~~~~~~----------------   67 (247)
                      ..+|.+++||||++.|+..+.++.+.+.+..            +           |+....+.|                
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            5789999999999999998888888776421            0           011111110                


Q ss_pred             --------ccCCeEEEEECCCCCEEEEEcC------CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC--
Q psy4393          68 --------HKLGISDVAWSSDSRLLVSGSD------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--  131 (247)
Q Consensus        68 --------~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  131 (247)
                              ....-..++|..||+++++.+-      -..+++|+-+ |........-.+--.+++|.|.|++||+.-.  
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~  278 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP  278 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence                    1223456899999999987654      2579999965 5533332222333456899999999998754  


Q ss_pred             -CCCEEEEECCCCeEEEee----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee--eeeeccCCCCCeEEEEE
Q psy4393         132 -DESVRIWDVRTGKCLKTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKF  204 (247)
Q Consensus       132 -d~~i~v~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~v~~~~~  204 (247)
                       ...|.+|+- +|..-..|    ......+..+.|++|+..||....|. |.+|-..+...  ++.+.......+..+.|
T Consensus       279 ~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W  356 (928)
T PF04762_consen  279 DRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW  356 (928)
T ss_pred             CCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence             234667763 34322222    23356789999999999999877555 99998887642  33333333444555899


Q ss_pred             CCCCC-EEEEEEcCCeEEEEE
Q psy4393         205 SPNGK-YILAATLDNTLKLWD  224 (247)
Q Consensus       205 s~~~~-~l~~~~~dg~i~vwd  224 (247)
                      +|... .|...+.+|.+..++
T Consensus       357 dpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  357 DPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCCCCEEEEEecCCcEEEEE
Confidence            99654 566677667776655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5e-07  Score=69.81  Aligned_cols=203  Identities=12%  Similarity=0.219  Sum_probs=133.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCC--CeEEEE--EecccCCeEEEEECCCCCEEEEEcC-CCeEEEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYD--GKFEKT--ISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWE   97 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d   97 (247)
                      +.+..+=++|+|++++|.++.++   |.|.-|.+..  |+....  ......+-.-++++++|++++++.- .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            45667789999999999887654   6676666653  444322  2222333467899999999988764 57899998


Q ss_pred             CCC-ceEEEE--EecCCcc----------EEEEEEcCCCCEEEEee-CCCCEEEEECCCCeEEE----eecCCCCCeEEE
Q psy4393          98 LSS-GKCLKT--LKGHSNY----------VFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLK----TLPAHSDPVSAV  159 (247)
Q Consensus        98 ~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~----~~~~~~~~i~~~  159 (247)
                      ++. |.....  +..|.+.          +....+.|+++++++.. ....|.+|++..+....    .++.. ..-+-|
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi  196 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHI  196 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcceE
Confidence            865 322111  1112222          67788999999888764 34579999998765322    22333 345779


Q ss_pred             EECCCCCEEEEec-CCCeEEEEeCCCc--e--eeeee---cc--CCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCc
Q psy4393         160 HFNRDGSLIVSSS-YDGLCRIWDTASG--Q--CLKTL---ID--DDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVV  228 (247)
Q Consensus       160 ~~~~~~~~l~~~~-~dg~i~v~d~~~~--~--~~~~~---~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~  228 (247)
                      .|+|++++.+... .+++|.+|.....  +  .++..   ..  ........+..++||++|+++.. ...|.+|.....
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            9999999876554 5889999987663  2  11211   11  12234567889999999998864 358888877654


Q ss_pred             c
Q psy4393         229 T  229 (247)
Q Consensus       229 ~  229 (247)
                      .
T Consensus       277 ~  277 (346)
T COG2706         277 G  277 (346)
T ss_pred             C
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.11  E-value=1.4e-06  Score=69.26  Aligned_cols=187  Identities=12%  Similarity=0.139  Sum_probs=123.2

Q ss_pred             CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC----------CCeEEEEECCCceEEEEEecCCc------
Q psy4393          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----------DKTLKIWELSSGKCLKTLKGHSN------  112 (247)
Q Consensus        49 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~~------  112 (247)
                      +.|.+.|..+.+.+..+.....+- .+ ++||++.++++..          +..|.+||..+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999988888877544443 24 9999998876654          77999999999998877763222      


Q ss_pred             -cEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCC-------------------------------CeEE
Q psy4393         113 -YVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSD-------------------------------PVSA  158 (247)
Q Consensus       113 -~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~-------------------------------~i~~  158 (247)
                       .-....++|+|++++....  +..+.+.|+.+++.+..+.....                               ....
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence             1235789999999987763  67899999988766544322110                               0001


Q ss_pred             E--------------EECC-CCCEEEEecCCCeEEEEeCCCce-----eeeeeccC------CCCCeEEEEECCCCCEEE
Q psy4393         159 V--------------HFNR-DGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDD------DNPPVSFVKFSPNGKYIL  212 (247)
Q Consensus       159 ~--------------~~~~-~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~------~~~~v~~~~~s~~~~~l~  212 (247)
                      .              .+.+ +|+++.+..+ |.|.+.|+...+     ....+...      ....+.-++++++++.++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            0              1123 6776666655 999999964432     12211111      112234489999999888


Q ss_pred             EEE----------cCCeEEEEECCCcceEEEEccCC
Q psy4393         213 AAT----------LDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       213 ~~~----------~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ...          ..+.|.++|..+.+.+..+....
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~  299 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH  299 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC
Confidence            743          22589999998887666554433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064|consensus

Probab=99.10  E-value=1.1e-09  Score=98.90  Aligned_cols=161  Identities=15%  Similarity=0.253  Sum_probs=125.6

Q ss_pred             ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE
Q psy4393          68 HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (247)
Q Consensus        68 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (247)
                      +-..|.++.=+|...+.++|+.||.+++|....++.+..++ .....+..+.|+.+|+.+..+..||.+.+|... .++.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            34457778778888899999999999999998887666554 233778889999999999999999999999987 5666


Q ss_pred             EeecCCCCCeEEEEECCCCCEEEEec---CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         147 KTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       147 ~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      ...+.|........|-.  ..+++++   .++.+.+||.--.....-....|....+++++-|..+.|++|+.+|.|++|
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence            77778887777777754  5566654   356899999643322111123455678999999999999999999999999


Q ss_pred             ECCCcceE
Q psy4393         224 DSKVVTPA  231 (247)
Q Consensus       224 d~~~~~~~  231 (247)
                      |+++.+.+
T Consensus      2364 D~rqrql~ 2371 (2439)
T KOG1064|consen 2364 DIRQRQLR 2371 (2439)
T ss_pred             ehHHHHHH
Confidence            99876543

>KOG4532|consensus

Probab=99.10  E-value=1.1e-07  Score=70.66  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=129.2

Q ss_pred             EEEEECCCC-----CEEEEEeCCCeEEEEecCCCeE-EEEEecccCCeEEEEE-CCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          31 SSVKFSPNG-----EWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        31 ~~~~~s~~~-----~~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      +.+.|-|..     .+||.|+..|...+|...+... ......+...|+-..= +-..-.+..++.|.++++.+++.+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            346676632     3688888999999998764332 2222222222221111 11122356677888888888765432


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-E-E-eecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-L-K-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~-~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ...+....-.+..+.++++++++++.+....|-.|.+..... + . ........-.+..|+.....+|++..||.+.||
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence            222221112377889999999999999999999998865432 2 2 122223334567899999999999999999999


Q ss_pred             eCCCceeeee----eccCCCCCeEEEEECCCCC--EEEEEEcCCeEEEEECCCcc
Q psy4393         181 DTASGQCLKT----LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       181 d~~~~~~~~~----~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~  229 (247)
                      |++.-.....    -..++.+.+..+.|++-|.  +|...-.-+.+.|-|.++..
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            9987543221    1234678899999998664  55555566899999998864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=6.6e-07  Score=68.93  Aligned_cols=201  Identities=15%  Similarity=0.201  Sum_probs=133.1

Q ss_pred             EEEEECC-CCCEEEEEeCCCe-EEEEecCCCeEEEEEecccCCeE--EEEECCCCCEEEEEcC-----CCeEEEEECC-C
Q psy4393          31 SSVKFSP-NGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGIS--DVAWSSDSRLLVSGSD-----DKTLKIWELS-S  100 (247)
Q Consensus        31 ~~~~~s~-~~~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----d~~i~v~d~~-~  100 (247)
                      ..++.+| .+..++.+-.-|. ..+||..++.....+......-.  --.|++||++|++.-.     .|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3678888 4555666777664 67889988887766654332211  1369999999988754     4789999998 5


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeC------------------CCCEEEEECCCCeEEEeec----CCCCCeEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------------------DESVRIWDVRTGKCLKTLP----AHSDPVSA  158 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~~~~~~----~~~~~i~~  158 (247)
                      .+.+..+..+.-.-..+.+.|++..|+.+..                  +..+.+.|..+|+.+....    .|..++.-
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            5666666655444456778999976666532                  2246677788888776633    36668999


Q ss_pred             EEECCCCCEEEEecCCCe-------EEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEc-CCeEEEEE
Q psy4393         159 VHFNRDGSLIVSSSYDGL-------CRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATL-DNTLKLWD  224 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd  224 (247)
                      +++.++|..++..-..|.       +-+++...  .+..+..      .-..-+-++++++++.++++++. .|.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            999999987766544442       33333222  1111111      11234678999999999987775 67999999


Q ss_pred             CCCcceEEE
Q psy4393         225 SKVVTPAII  233 (247)
Q Consensus       225 ~~~~~~~~~  233 (247)
                      ..++..+..
T Consensus       246 ~~tg~~~~~  254 (305)
T PF07433_consen  246 AATGRLLGS  254 (305)
T ss_pred             CCCCCEeec
Confidence            888765544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=3.7e-09  Score=79.91  Aligned_cols=207  Identities=21%  Similarity=0.410  Sum_probs=135.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-E----EEEEeccc------------CCeEEEEECCCCC--EEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-F----EKTISGHK------------LGISDVAWSSDSR--LLVSG   87 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~----~~~~~~~~------------~~v~~~~~~~~~~--~l~~~   87 (247)
                      ..-|+++.|...|.+|++|...|.|.+|.-.... +    ...+++|.            ..|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4668999999999999999999999998754322 1    11233332            2467788876543  46777


Q ss_pred             cCCCeEEEEECCCce-------------------EE--------EEE----------------ecCCccEEEEEEcCCCC
Q psy4393          88 SDDKTLKIWELSSGK-------------------CL--------KTL----------------KGHSNYVFCCNFNPQSN  124 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~-------------------~~--------~~~----------------~~~~~~v~~~~~~~~~~  124 (247)
                      +.|.+|++|.+....                   ++        ..+                ..|.-.+.++.++.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            789999999864320                   00        000                12344466778888877


Q ss_pred             EEEEeeCCCCEEEEECCCCe---EEEeecCCC-----CCeEEEEECCC-CCEEEEecCCCeEEEEeCCCcee------ee
Q psy4393         125 LIVSGSFDESVRIWDVRTGK---CLKTLPAHS-----DPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC------LK  189 (247)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~------~~  189 (247)
                      .++++ .|=.|.+|++....   .+..++.|.     ..|++..|+|. ...+.-.+..|.|++-|++....      +.
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            77664 46678999886432   233334442     34778889985 34566677799999999984311      11


Q ss_pred             ---------eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc-ceEEEEc
Q psy4393         190 ---------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV-TPAIICS  235 (247)
Q Consensus       190 ---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~  235 (247)
                               .++......|..+.|+++|+++++-+ -.+|++||.+.. .|+.++.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec
Confidence                     11112234678899999999988765 369999999865 5766653

>KOG3914|consensus

Probab=99.09  E-value=2.3e-09  Score=83.19  Aligned_cols=160  Identities=16%  Similarity=0.198  Sum_probs=106.3

Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceE-EEEEe--cCCccEEEEEEcCCCCEEEEeeCCCC---EEEEECCCCeE
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDES---VRIWDVRTGKC  145 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~  145 (247)
                      ......++++++++.+..+....+++...... .+.+.  .-...-..+.+..+......+..-|.   +.+|....+. 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence            44456678888888888877776776654332 11111  11111223334333344444433444   4444443332 


Q ss_pred             EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       146 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ...+-+|-.-++.++++||+++++++..|..|++-.......+..+..+|..-|..++.-++ +.|++++.|++|++||.
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            23345677788999999999999999999999998877666667777777777888887765 56899999999999999


Q ss_pred             CCcceEEE
Q psy4393         226 KVVTPAII  233 (247)
Q Consensus       226 ~~~~~~~~  233 (247)
                      ..+..+-.
T Consensus       223 ~sgk~L~t  230 (390)
T KOG3914|consen  223 TSGKLLDT  230 (390)
T ss_pred             ccCCcccc
Confidence            98876544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.09  E-value=1.7e-07  Score=71.34  Aligned_cols=187  Identities=21%  Similarity=0.186  Sum_probs=121.6

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE-ecCC---c
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHS---N  112 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~---~  112 (247)
                      +++..+++++.++.+..||..+++......... .+.... ...+..++.+..++.+..+|..+++..... ....   .
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            356677777899999999999999887776422 211111 123556667778889999999999887763 3221   1


Q ss_pred             cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC----------eEEEEECCCCCEEEEecCCCe-EEEEe
Q psy4393         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP----------VSAVHFNRDGSLIVSSSYDGL-CRIWD  181 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~-i~v~d  181 (247)
                      ..........+..++.+..++.+..+|+++|+.+.........          +..-....++ .++.++.++. +.+ |
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d  189 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D  189 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence            1112222223778888888999999999999988776553322          1122222344 6666777775 555 9


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      +.+++.+-..  .. ..... ...+++..|+.++.++.|..||.++++.+
T Consensus       190 ~~tg~~~w~~--~~-~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  190 LATGEKLWSK--PI-SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTTTEEEEEE--CS-S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCCEEEEe--cC-CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            9999844221  11 11221 14577888888889999999999998764

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.09  E-value=2.5e-07  Score=71.23  Aligned_cols=183  Identities=20%  Similarity=0.329  Sum_probs=121.4

Q ss_pred             EECCCCCEEEEEe-----CCCeEEEEecC-CCeEEEEEecccCCeEEEEECCCCCEEEEEcC------------------
Q psy4393          34 KFSPNGEWLASSS-----ADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSD------------------   89 (247)
Q Consensus        34 ~~s~~~~~l~~~~-----~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------   89 (247)
                      .||+||++|++.-     ..|.|-|||.. .-....++..+...-..+.+.|||+.|+++..                  
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            6999999998753     34789999998 55666778878778889999999988776631                  


Q ss_pred             CCeEEEEECCCceEEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCC-------EEEEECCCCeEEEeec-------C
Q psy4393          90 DKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDES-------VRIWDVRTGKCLKTLP-------A  151 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~-------~  151 (247)
                      +..+...|..+++.+....    -+...+..+++.++|..++..-..|.       +-+++.  ++.+..+.       .
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRR  214 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHh
Confidence            1245556777777665533    25567899999999876665433332       333332  22222222       2


Q ss_pred             CCCCeEEEEECCCCCEEEE-ecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         152 HSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       152 ~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      -.+.+-++++++++.++++ +-..+.+.+||..+++.+......   .+..++..+++ ++++.+ .|.+...
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~~~~  282 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQLIRL  282 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccEEEc
Confidence            2467889999999987755 456678999999999877654332   24456666665 555554 4554333

>KOG4532|consensus

Probab=99.08  E-value=5.9e-08  Score=72.01  Aligned_cols=174  Identities=16%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce-E-EE-EEecCCccEEEEE
Q psy4393          42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-C-LK-TLKGHSNYVFCCN  118 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~-~~-~~~~~~~~v~~~~  118 (247)
                      +..++.|.++++++++.+.....+......+..++.++|++++++.+....|..|.+.... . .+ ......+.-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            4556777777777776544333332222347889999999999999999999999887643 2 22 1222233445778


Q ss_pred             EcCCCCEEEEeeCCCCEEEEECCCCeEE-----EeecCCCCCeEEEEECCCCC--EEEEecCCCeEEEEeCCCceeeeee
Q psy4393         119 FNPQSNLIVSGSFDESVRIWDVRTGKCL-----KTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       119 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      |+.....+|++..||.+.+||+|.-...     ..-..|.+.++...|++.|.  +|+..-.-+.+.+.|++++...+.+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            9999999999999999999999865432     22345788999999998664  4555555678999999988655443


Q ss_pred             ccCCC-------CCeEEEEECCCCCEEEEEE
Q psy4393         192 IDDDN-------PPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       192 ~~~~~-------~~v~~~~~s~~~~~l~~~~  215 (247)
                      ...+.       ..+..-.|+.++.-+.+.+
T Consensus       291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  291 VIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ecCccccccccccccccccccCCCccccccc
Confidence            22211       2244455666665554444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.07  E-value=1.7e-06  Score=66.24  Aligned_cols=180  Identities=19%  Similarity=0.290  Sum_probs=117.2

Q ss_pred             eEEEEEC-CCCCEEEEEeCCCeEEEEecCCCeEEEEEec-----ccCCeEEEEECCCCCEEEEEcCC--------CeEEE
Q psy4393          30 VSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSRLLVSGSDD--------KTLKI   95 (247)
Q Consensus        30 v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v   95 (247)
                      ...+++. +++.+++ +...+ +.++|..+++.......     .....+++++.|+|++.++....        |.+..
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 6655544 45444 55568887765544443     23458899999999987776543        55777


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCCe-------EEEeecCCCCCeEEEEECCCCCE
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGK-------CLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      ++.. ++... +.........++|+|+++.|+ +-+..+.|..+++....       ....+....+....++++.+|++
T Consensus       120 ~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEE-EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            7776 44333 333344567899999998775 55677789999885321       11122222234678999999998


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE-CCCCCEEEEEE
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAAT  215 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~  215 (247)
                      .++....+.|.++|.. ++.+..+... ....++++| .++.+.|+..+
T Consensus       198 ~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            8887788999999988 7766666544 346788999 57767666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190|consensus

Probab=99.07  E-value=7.3e-10  Score=89.68  Aligned_cols=168  Identities=19%  Similarity=0.316  Sum_probs=123.2

Q ss_pred             EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCE
Q psy4393          63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV  135 (247)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  135 (247)
                      +.+.+|...|..+.--.+.+-+++++.|.++++|.++.       ..+..+.+.|..+|..+.|-.+.+.+++  .||.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            44567777777776555667789999999999999864       3356677889999999999888777765  58899


Q ss_pred             EEEECCCCeEEEeec--CCCCCeEEEEECC--CCCEEEE-ecCCCeEEEEeCCCceeeeeecc----CCCCCeEEEEECC
Q psy4393         136 RIWDVRTGKCLKTLP--AHSDPVSAVHFNR--DGSLIVS-SSYDGLCRIWDTASGQCLKTLID----DDNPPVSFVKFSP  206 (247)
Q Consensus       136 ~v~d~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~----~~~~~v~~~~~s~  206 (247)
                      ++||.-.++.+..+.  ...+....+.--+  +...+++ ++...+++++|.+..+....+..    ..+..+.+++..+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999998777655332  1222333333333  3334444 47788999999998776554422    2335678999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         207 NGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       207 ~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      .|++++++-..|.|.+.|.+++..+.
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceec
Confidence            99999999999999999999988664

>KOG4714|consensus

Probab=99.05  E-value=3.6e-09  Score=77.95  Aligned_cols=148  Identities=18%  Similarity=0.263  Sum_probs=98.6

Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEE-EEEecCCccEEEEEEcCCCCEEEEee-----CCCCEEEEECCCCeEEEeecCCC
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRIWDVRTGKCLKTLPAHS  153 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~  153 (247)
                      .++.++++..||.+.+.+.+.-..+ ..+......-...+....++.+.+++     .-+..+.|+++..+....-+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            4567899999999999987652111 11111111111223334455555443     22456677766443322222223


Q ss_pred             CCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC-CCEEEEEEcCCeEEEEECCC
Q psy4393         154 DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       154 ~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..+.+++-+|... .+++|+.||.+.+||.++......+...++.++..+-|+|. +..|.++++||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488899999655 56778889999999999987777777778888999999984 67999999999999999886

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=2.9e-07  Score=74.00  Aligned_cols=195  Identities=20%  Similarity=0.313  Sum_probs=130.9

Q ss_pred             CCeEEEEECCCCC--EEEE-----EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-----------
Q psy4393          28 KAVSSVKFSPNGE--WLAS-----SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----------   89 (247)
Q Consensus        28 ~~v~~~~~s~~~~--~l~~-----~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------   89 (247)
                      ..|....|+|.++  .|+.     .+..+.+++|.+..+..+....-....=..+.|.+.|+.++.--.           
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            5677888888644  3442     456788999988755544332222222345789999987754311           


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCE
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      ...+.++++.. ..++......++|....|.|.++.+++.+  .+-.+.++|++.. ....+.  ...-..+.|+|.+++
T Consensus       254 esnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~  329 (561)
T COG5354         254 ESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERY  329 (561)
T ss_pred             cceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccE
Confidence            23577888763 32333334578899999999988877654  5677899999865 333332  334456789999999


Q ss_pred             EEEecCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE------cCCeEEEEECCCc
Q psy4393         168 IVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDSKVV  228 (247)
Q Consensus       168 l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~  228 (247)
                      ++.++.+   |.+.+||..........+..  .....+.|+||++++.+..      .|+.|.|||.-..
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            9987765   67999998776544422222  2345678999999998765      3788999997554

>KOG1832|consensus

Probab=99.02  E-value=2.1e-10  Score=97.29  Aligned_cols=190  Identities=22%  Similarity=0.356  Sum_probs=139.5

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--eEEEEECC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELS   99 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~   99 (247)
                      ++..|....+|++|+-+.++|+.|+-.|.|+++++.+|.......+|..+++-+.-+.+|..+++.+...  ...+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            3456889999999999999999999999999999999999999999999999998888999887765533  46789986


Q ss_pred             C-ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC----CCCCeEEEEECCCCCEEEEecCC
Q psy4393         100 S-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       100 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      . +...+.+.+.    .++.|+.....-+.|+......+||++++..+..+-.    ....-+++.|+|+.++++   .|
T Consensus      1176 s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd 1248 (1516)
T KOG1832|consen 1176 STGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND 1248 (1516)
T ss_pred             cccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eC
Confidence            4 3444454432    3566776655556677667889999999876544211    112236778999998877   56


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      |.  +||.+..+.++.+-.- . -...=.|+|+|..++..+     .|||+++
T Consensus      1249 Gv--LWDvR~~~aIh~FD~f-t-~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQF-T-DYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             ce--eeeeccHHHHhhhhhh-e-ecccccccCCCceEEeec-----hhhhhHH
Confidence            64  7999987655544211 1 111234999999999887     4899876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=3.8e-07  Score=68.41  Aligned_cols=164  Identities=14%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-------ccCCeEEEEECCCC------CEEEEEcCCCeEEEEE
Q psy4393          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-------HKLGISDVAWSSDS------RLLVSGSDDKTLKIWE   97 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d   97 (247)
                      ..++||||+.+||.+...|+|+++|+.... ...+..       ....|..+.|.+..      ..+++-.-.|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            467999999999999999999999986533 222221       12346666665421      1355555677666665


Q ss_pred             CCC-----ceEEEEEec---CCccEEEEEEcCCCCEEEEeeCCC-----------CEEEEECCCCeEE------------
Q psy4393          98 LSS-----GKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDE-----------SVRIWDVRTGKCL------------  146 (247)
Q Consensus        98 ~~~-----~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~------------  146 (247)
                      +..     .+....+..   ....|.++.++|..++|+.|+...           -+..|.+-++.+.            
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            422     222333322   345688999999988888776421           2555654322110            


Q ss_pred             --------Ee------e---cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy4393         147 --------KT------L---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  195 (247)
Q Consensus       147 --------~~------~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  195 (247)
                              ..      +   ......|..|..+|||..|++...+|.|.+|++.+-+....+...+
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                    00      0   1123468889999999999999999999999998877666654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.98  E-value=2.8e-07  Score=83.73  Aligned_cols=156  Identities=18%  Similarity=0.267  Sum_probs=108.0

Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecc---------------cCCeEEEEECCCCCE-EEEEcCCCeE
Q psy4393          31 SSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH---------------KLGISDVAWSSDSRL-LVSGSDDKTL   93 (247)
Q Consensus        31 ~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~-l~~~~~d~~i   93 (247)
                      ..++|+| ++..+++...++.|++|+..++... .+.+.               ......++++|+++. +++...++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            4689999 4555666677889999998766432 12111               123456899999884 4566667899


Q ss_pred             EEEECCCceEEEEEec-------------C--------CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC-
Q psy4393          94 KIWELSSGKCLKTLKG-------------H--------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA-  151 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~-------------~--------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-  151 (247)
                      ++||+.++.......+             .        ...-..++++++|.++++-..++.|++||..++........ 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999987643211100             0        01124678899999888888899999999987765432211 


Q ss_pred             ------------CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         152 ------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       152 ------------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                                  .-.....++++++|+++++-+.++.|++||+.+++.
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                        112356789999999888888899999999988754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.96  E-value=5.5e-07  Score=80.57  Aligned_cols=198  Identities=15%  Similarity=0.221  Sum_probs=132.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEE----ecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC---
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS---   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---   99 (247)
                      ...|.++.|-++...++.+..+|.|.+.    +..... ...+..-+.+|.+++|+||+..++..+.++.+.+.+-.   
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4579999999999988888999999988    443332 23333456789999999999999988888877664311   


Q ss_pred             ------------CceEE--------EEEec------------------------CCccEEEEEEcCCCCEEEEeeC---C
Q psy4393         100 ------------SGKCL--------KTLKG------------------------HSNYVFCCNFNPQSNLIVSGSF---D  132 (247)
Q Consensus       100 ------------~~~~~--------~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~---d  132 (247)
                                  ..+.+        ..|.+                        ..+.-..++|-.||.++|+.+-   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                        00000        01100                        1123346789999999998764   2


Q ss_pred             ---CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC---CCeEEEEeCCCceeeeeecc---CCCCCeEEEE
Q psy4393         133 ---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLID---DDNPPVSFVK  203 (247)
Q Consensus       133 ---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~~  203 (247)
                         +.++||+-. |........-.+--.+++|-|.|.++|+.-.   .-.|.+|. ++|-....+..   .....+..++
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence               468999854 5544333333344457899999999987754   23455554 34433333322   3456789999


Q ss_pred             ECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         204 FSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       204 ~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      |++|+..||....|. |.+|-....
T Consensus       312 Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  312 WNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ECCCCCEEEEEecCC-ceEEEeeCC
Confidence            999999999977554 999987664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=6.7e-09  Score=55.23  Aligned_cols=38  Identities=37%  Similarity=0.749  Sum_probs=35.5

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG   55 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~   55 (247)
                      ....++.+|.++|.+++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695|consensus

Probab=98.93  E-value=6.9e-09  Score=79.36  Aligned_cols=149  Identities=14%  Similarity=0.248  Sum_probs=109.2

Q ss_pred             EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-----EEEeecCCCCCeEEE
Q psy4393          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-----CLKTLPAHSDPVSAV  159 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~~  159 (247)
                      ++.+.+..+-+-|++++-. ..+. ..+.|.+..|...++++..|+.+|.|-.+|+|.+.     +... --|+..|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhh
Confidence            4455666777888887643 2343 45668888888888999999999999999998652     2222 2467889998


Q ss_pred             EECC-CCCEEEEecCCCeEEEEeCCCcee---eeeeccCCC-CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         160 HFNR-DGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       160 ~~~~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      ..-. ++.+|++.+.+|.|++||.+-.++   +..+..+.+ ....-+..++....+++++.|-..|||..+.++.+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8877 788999999999999999987666   444433221 11122446777889999999999999999988776654


Q ss_pred             cc
Q psy4393         235 ST  236 (247)
Q Consensus       235 ~~  236 (247)
                      .-
T Consensus       385 pf  386 (425)
T KOG2695|consen  385 PF  386 (425)
T ss_pred             CC
Confidence            43

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.91  E-value=2.3e-06  Score=69.84  Aligned_cols=186  Identities=18%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEE-
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC-  116 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~-  116 (247)
                      .+..+++++.+|.+.-+|..+++................  .++..++.++.++.+..+|..+++.+....... .+.+ 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence            366788888899999999989988776553322111222  246778888899999999999998766554322 2211 


Q ss_pred             EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeE-----EEEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS-----AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       117 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      ...  .+..++.+..++.++.||.++++.+...........     +....  +..++.+..+|.+..+|+.+++.+-..
T Consensus       141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111  245677778899999999999988776654322111     11111  236777888899999999888654322


Q ss_pred             ccCCC---CC---eEEEEECC--CCCEEEEEEcCCeEEEEECCCcce
Q psy4393         192 IDDDN---PP---VSFVKFSP--NGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       192 ~~~~~---~~---v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .....   ..   ...+.-+|  .+..+++++.+|.+..||.++++.
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence            11000   00   00000001  244666666777777777766544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.90  E-value=3.3e-06  Score=68.92  Aligned_cols=188  Identities=15%  Similarity=0.117  Sum_probs=114.4

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeE-----EEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCc--
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN--  112 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--  112 (247)
                      ..++.+..+|.+..+|..+++.............     ....  .+..++.+..++.+..+|.++++.+........  
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g  223 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG  223 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence            4555566778888888877776665543221110     0111  134677788889999999988876543321100  


Q ss_pred             -----cEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCc
Q psy4393         113 -----YVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (247)
Q Consensus       113 -----~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (247)
                           ....+.-+|  .+..++.++.+|.++.+|..+++.+...... . .....  ..+..+++++.+|.+..+|..++
T Consensus       224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence                 000000011  2457777888999999999999876655421 1 11122  24567888889999999999988


Q ss_pred             eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +.+-...............  .+..|++++.+|.|.++|.++++.+-.+.
T Consensus       300 ~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       300 SELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             cEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            7653321111111111122  35689999999999999998887665544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912|consensus

Probab=98.90  E-value=4.1e-07  Score=76.78  Aligned_cols=209  Identities=15%  Similarity=0.239  Sum_probs=149.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC------------CEEEEEcCCCeEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS------------RLLVSGSDDKTLKIW   96 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~v~   96 (247)
                      .-.++.|+|.| ++|.|+ ...|.+-|..+-+..+.+..|...|+.+.|.|..            -.|+++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35577899877 345544 5578888988888888888899999999997621            246778888999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcC---CC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCCEEEEe
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNP---QS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSS  171 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  171 (247)
                      |...+..+..+..+.+++..++|-+   +. .+++.-.....+.+|+..+|+.............|+.++| |.+++..-
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9998887777888888888888865   33 4566666677899999999998887776667788899988 66677777


Q ss_pred             cCCCeEEEEeCCC-------ceeeeeeccC------------------CCCC------eEEEEECCCCCEEEEEEcCCeE
Q psy4393         172 SYDGLCRIWDTAS-------GQCLKTLIDD------------------DNPP------VSFVKFSPNGKYILAATLDNTL  220 (247)
Q Consensus       172 ~~dg~i~v~d~~~-------~~~~~~~~~~------------------~~~~------v~~~~~s~~~~~l~~~~~dg~i  220 (247)
                      +..|.+.+-+.-.       ++..+.-...                  ....      ...++|+|.-+.++....-..+
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel  254 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL  254 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence            7778776665321       1111111100                  0000      1136789998888888888999


Q ss_pred             EEEECCCcceEEEEccCCc
Q psy4393         221 KLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       221 ~vwd~~~~~~~~~~~~~~~  239 (247)
                      .|+|.+-..++-+..-+..
T Consensus       255 lv~dle~~~~l~vvpier~  273 (1062)
T KOG1912|consen  255 LVFDLEYECCLAVVPIERG  273 (1062)
T ss_pred             EEEcchhhceeEEEEeccC
Confidence            9999987776665554443

>KOG2315|consensus

Probab=98.86  E-value=6.6e-07  Score=72.72  Aligned_cols=148  Identities=20%  Similarity=0.370  Sum_probs=102.2

Q ss_pred             EEEECCCCCE-EEE--EeCCC---------eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc--CCCeEEEEE
Q psy4393          32 SVKFSPNGEW-LAS--SSADK---------LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWE   97 (247)
Q Consensus        32 ~~~~s~~~~~-l~~--~~~dg---------~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d   97 (247)
                      .+.|++-|.- |+.  ...|.         .++++++........+. ..++|.++.|+|+++.++++-  .=..+.++|
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            4678777663 222  22222         46666665323322232 367899999999998766543  345788999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC---CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  173 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  173 (247)
                      ++ +..+..+  ..++-.++-|+|.|++++.++.+   |.+-+||..+.+.+..+.+-.  .+-..|+|||++++|++. 
T Consensus       301 lr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  301 LR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence            86 4444444  34556788999999999887764   789999999987777776543  345689999999998874 


Q ss_pred             -----CCeEEEEeCCCc
Q psy4393         174 -----DGLCRIWDTASG  185 (247)
Q Consensus       174 -----dg~i~v~d~~~~  185 (247)
                           |+.++||+....
T Consensus       376 PRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccEEecCCeEEEEecCc
Confidence                 577899987643

>KOG0882|consensus

Probab=98.86  E-value=3.3e-08  Score=78.25  Aligned_cols=208  Identities=20%  Similarity=0.235  Sum_probs=141.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---CeEEEEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCCc
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSG  101 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~  101 (247)
                      |...|+-+. ..-.+++.+++.||.++.|--..   -+...-+..|-..+.+++.+-++-.+++.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            555555443 33467889999999999997543   1222334556677888888889998999777 999999999876


Q ss_pred             eEEEEEecCCccEEEEEE-cCCC---CEEEE-eeCCCCEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393         102 KCLKTLKGHSNYVFCCNF-NPQS---NLIVS-GSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~-~~~~---~~l~~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      ..+..++...-+= .+.| ...|   ..++. .-.++.+.++|-+...+  ...-..|..+|.++.+++.+..+.+....
T Consensus        87 DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            5443333211111 1222 2222   13333 35678899999876542  23345788999999999999999999999


Q ss_pred             CeEEEEeCCC-ceeeee---e----------ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         175 GLCRIWDTAS-GQCLKT---L----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       175 g~i~v~d~~~-~~~~~~---~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      |.|.-|.... -+....   +          .........++.|+|++..+.+-+.|..|++++.++++...++.
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            9999998763 111111   0          01122345678999999999999999999999999987665543

>KOG2695|consensus

Probab=98.84  E-value=2.3e-08  Score=76.54  Aligned_cols=156  Identities=18%  Similarity=0.301  Sum_probs=111.3

Q ss_pred             EECC--CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc-----eEEEE
Q psy4393          34 KFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-----KCLKT  106 (247)
Q Consensus        34 ~~s~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~  106 (247)
                      +|+-  .|-+ ++.+-+..+-+-+.+++.. +.+. ....|.++.|.-.++++..|..+|.|..+|++..     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            5653  2334 3445566677777776643 2332 4556888889888999999999999999999864     23333


Q ss_pred             EecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeE---EEeecCCCCCe--EEEEECCCCCEEEEecCCCeEEEE
Q psy4393         107 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      + -|.+.|.++..-. +++.+.+.+-+|.|++||+|.-++   +....+|-..-  .-+.+++....+++++.|...++|
T Consensus       295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            3 3667777776655 677888889999999999997665   66666664322  223456666788889999999999


Q ss_pred             eCCCceeeeeecc
Q psy4393         181 DTASGQCLKTLID  193 (247)
Q Consensus       181 d~~~~~~~~~~~~  193 (247)
                      .++.++.+.++..
T Consensus       374 sl~~ghLl~tipf  386 (425)
T KOG2695|consen  374 SLDSGHLLCTIPF  386 (425)
T ss_pred             ecccCceeeccCC
Confidence            9999988776543

>KOG2114|consensus

Probab=98.83  E-value=1e-06  Score=75.13  Aligned_cols=200  Identities=15%  Similarity=0.191  Sum_probs=130.9

Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-eEEEEECCCCCEEEEEcCCC-----eEEEEECCCc------
Q psy4393          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGSDDK-----TLKIWELSSG------  101 (247)
Q Consensus        34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~------  101 (247)
                      +|++.+..++.|+.+|.|.+++.. -+....+..+... |..+....+.+++++.+.|.     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            588889999999999999888642 2222445555545 44444444446777766654     5899998642      


Q ss_pred             eEEE--EEec-----CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC----CeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393         102 KCLK--TLKG-----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----GKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       102 ~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      .++.  .+..     ...++.+++.+.+-+.+|.|-.+|.|..+.-.-    +..........++|+.+++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            2231  1111     245677888888889999999999998885321    1122223345679999999888876333


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ......|.+|.+....+.......++.++.|-.+++....+++++ +..+.+||.+...+-..+.
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            334567888988754433344556677788888887665455554 4589999987766554444

>KOG1912|consensus

Probab=98.81  E-value=8.6e-07  Score=74.92  Aligned_cols=205  Identities=19%  Similarity=0.253  Sum_probs=136.9

Q ss_pred             EEecCCCCeEEEEECCCC------------CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC---CC-CEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNG------------EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS---DS-RLLV   85 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~------------~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~   85 (247)
                      ++.-|...|+.+.|.|-.            -+||++...|.|.+||...+.....+..+..++.++.|-+   +. ..++
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            344588999999998732            1467788889999999988877788888888899999865   33 4566


Q ss_pred             EEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECC-C------CeEEEeecCCCC---
Q psy4393          86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVR-T------GKCLKTLPAHSD---  154 (247)
Q Consensus        86 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-~------~~~~~~~~~~~~---  154 (247)
                      +-.....+.+|+..+|+.............|..++| +...+..-+..|.+-+.+.- .      ++..+.-..|..   
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            777778999999999988776666666677788888 33444444444544444331 1      111111111111   


Q ss_pred             --------------C--------eEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC--CCE
Q psy4393         155 --------------P--------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN--GKY  210 (247)
Q Consensus       155 --------------~--------i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~  210 (247)
                                    +        ....+|+|.-+.++.......+.++|+.-..++....... ..+..+.+-|+  ...
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GGAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CCcceeEeccCCCcce
Confidence                          0        1124567766555555567789999998777766553332 23455666665  458


Q ss_pred             EEEEEcCCeEEEEECCC
Q psy4393         211 ILAATLDNTLKLWDSKV  227 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~  227 (247)
                      |++...||.+.+|-.+.
T Consensus       289 LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEecCCeEEEEEeec
Confidence            99999999999997654

>KOG0309|consensus

Probab=98.81  E-value=6.9e-08  Score=80.88  Aligned_cols=214  Identities=24%  Similarity=0.367  Sum_probs=140.4

Q ss_pred             CCCCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc--cCCeEEEEECCCC---CEE
Q psy4393          10 SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDS---RLL   84 (247)
Q Consensus        10 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~---~~l   84 (247)
                      +|=..|.+-...++.. .+++.++..+|.|+-++.++.-|. .+-|+.+.-.....-.|  .-.|....|+|..   ..+
T Consensus         8 gpyns~tf~kslsl~v-~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wi   85 (1081)
T KOG0309|consen    8 GPYNSPTFGKSLSLKV-DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWI   85 (1081)
T ss_pred             CCCCCCccCceeEEEe-cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeE
Confidence            3334444555555542 467888899999999998888774 45555443221111112  2236677887742   234


Q ss_pred             EEEcCCCeEEEEECCCc---eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEE
Q psy4393          85 VSGSDDKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAV  159 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~  159 (247)
                      ++.+. ..-.+|++...   ..-..+.+|...+..+.|+|+. ..+++++.|..++.||+++.. ++..+..-......+
T Consensus        86 Vsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   86 VSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            54444 34447887543   2233456788889999999865 578899999999999999864 344444334456778


Q ss_pred             EECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECC
Q psy4393         160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +|+.....+.+.+....+.+||.+.+.........+...+..++|.- -...+.+.+.||+|++||..
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            99876666666677788999999987654444444556677777653 23467888899999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.81  E-value=2.3e-08  Score=53.14  Aligned_cols=38  Identities=37%  Similarity=0.868  Sum_probs=35.8

Q ss_pred             eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      +++..+..|.++|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041|consensus

Probab=98.80  E-value=4.2e-08  Score=81.93  Aligned_cols=157  Identities=17%  Similarity=0.301  Sum_probs=121.4

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce---------------EEEEEecCCccEEEEEEcCCCCEEEEeeCCC
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE  133 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  133 (247)
                      .....++.|+....+|++|+.||.+++..+.+..               .-+.+.+|...|.-+.|+.+.+.+.+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3457889999999999999999999999875421               1234678999999999999999999999999


Q ss_pred             CEEEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEE
Q psy4393         134 SVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       134 ~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  211 (247)
                      .|.+|-+..++-...+.  ...+.|.+|+|+.+|..++....||.|.+=.++.++....-.  .......+.|++|.+.+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHH
Confidence            99999998776433322  224568899999999999999999988776665543221111  12234568899999999


Q ss_pred             EEEEcCCeEEEEECCC
Q psy4393         212 LAATLDNTLKLWDSKV  227 (247)
Q Consensus       212 ~~~~~dg~i~vwd~~~  227 (247)
                      +.+-..|.+++||.+.
T Consensus       172 Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQG  187 (1189)
T ss_pred             HhhhcCCcEEEecccc
Confidence            9999999999999653

>KOG0309|consensus

Probab=98.76  E-value=1.5e-07  Score=78.95  Aligned_cols=207  Identities=22%  Similarity=0.337  Sum_probs=133.5

Q ss_pred             EEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeE-EEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..+-+.+|.+.|+.+-|.|... .+++++.|-.+..||+..... .........+...+.|+-..-.+++.+....+++|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            4567789999999999999655 788999999999999976543 33444445556778898755556666777889999


Q ss_pred             ECCCc-eEEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEE-EeecCCCCCeEEEEECCCCCEEEEec-
Q psy4393          97 ELSSG-KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSS-  172 (247)
Q Consensus        97 d~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-  172 (247)
                      |.+.+ ..+..+++|...+..++|+.- ...+.+.+.|+.++.||....... .....-..++..-++.|=|+-.+.-- 
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence            99875 567788888888888888652 346778889999999998644321 12222344666666666444222111 


Q ss_pred             -CCCeEEEEeCC---------Cc-eeeeeeccCCCCCeEEEEEC--------CC--CCEEEEEEcCCeEEEEECC
Q psy4393         173 -YDGLCRIWDTA---------SG-QCLKTLIDDDNPPVSFVKFS--------PN--GKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       173 -~dg~i~v~d~~---------~~-~~~~~~~~~~~~~v~~~~~s--------~~--~~~l~~~~~dg~i~vwd~~  226 (247)
                       .+..+.+++-+         ++ +.+.++. +|...|....|-        -|  .=.|++-+.|..+++|-+.
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence             12233333332         22 2233332 232233222222        12  2278999999999999764

>KOG0882|consensus

Probab=98.76  E-value=3.2e-07  Score=72.81  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=144.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCeEEEEEecccCC-eEEEEECCCC--CEE-EEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDS--RLL-VSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~--~~l-~~~~~d~~i~v~d~~   99 (247)
                      .|-+.|.+++.+.+|.++.+.+. |..++++|+++-.....+.....+ ..+...++..  ..+ ++.-.++.+.++|-.
T Consensus        51 aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~  130 (558)
T KOG0882|consen   51 AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF  130 (558)
T ss_pred             HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence            56677888899999998888666 999999998776554443322222 1122223321  123 334457899999976


Q ss_pred             Cce-EE-EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC------CeEE---------EeecCCCCCeEEEEEC
Q psy4393         100 SGK-CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT------GKCL---------KTLPAHSDPVSAVHFN  162 (247)
Q Consensus       100 ~~~-~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------~~~~---------~~~~~~~~~i~~~~~~  162 (247)
                      ... .. ..-+-|..+|.++.+++.+..+++....|.|.-|....      ....         ..+........++.++
T Consensus       131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs  210 (558)
T KOG0882|consen  131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS  210 (558)
T ss_pred             CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence            443 22 22345778999999999999999999999999998762      1111         1112223456789999


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeeec--------------------------------cCCCCCeEEEEECCCCCE
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLI--------------------------------DDDNPPVSFVKFSPNGKY  210 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------------------~~~~~~v~~~~~s~~~~~  210 (247)
                      |++..+.+-+.|..|++++..+++..+.+-                                .......+.+.|+..|++
T Consensus       211 p~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f  290 (558)
T KOG0882|consen  211 PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF  290 (558)
T ss_pred             cccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE
Confidence            999999999999999999999876433220                                011223456789999999


Q ss_pred             EEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         211 ILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      |+.++-= -|+|.++.+.+...++...
T Consensus       291 lly~t~~-gikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  291 LLYGTIL-GIKVINLDTNTVVRILGKD  316 (558)
T ss_pred             EEeecce-eEEEEEeecCeEEEEeccc
Confidence            9998754 4788888888887776553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.73  E-value=6.7e-06  Score=62.49  Aligned_cols=179  Identities=18%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             CCeEEEEecCCCeEEEEEecccCCeEEEE--ECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCE
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL  125 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  125 (247)
                      +|.|..||..+++......... ......  ..+++..+++++.++.+..||..+|+.+........ +.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccc
Confidence            6788999998998887775311 111112  223567788888999999999999988776654221 11111 223456


Q ss_pred             EEEeeCCCCEEEEECCCCeEEEee-cCCC---CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCC---C
Q psy4393         126 IVSGSFDESVRIWDVRTGKCLKTL-PAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---P  198 (247)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~  198 (247)
                      ++.+..++.++.+|..+|+.+... ....   .....+....++..++++..++.+..+|+++|+.+-........   .
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            666678889999999999988773 3221   11122223334777888888999999999999876555332211   1


Q ss_pred             e------EEEEECCCCCEEEEEEcCCe-EEEEECCCcceE
Q psy4393         199 V------SFVKFSPNGKYILAATLDNT-LKLWDSKVVTPA  231 (247)
Q Consensus       199 v------~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~  231 (247)
                      +      ..-....++ .++.++.++. +.+ |..++..+
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~  196 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKL  196 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEE
Confidence            1      122222344 6777777775 555 88887744

...

>KOG1920|consensus

Probab=98.69  E-value=1.1e-05  Score=71.61  Aligned_cols=198  Identities=17%  Similarity=0.231  Sum_probs=128.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC----CC---
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL----SS---  100 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~----~~---  100 (247)
                      ..|.++.|..+++-++.+...|.|.+-|.++.... ....-..+|.+++|+||++.++..+..+++.+-+-    -.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            58999999999998888899999999887654432 23334678999999999999988888777755332    00   


Q ss_pred             ----------------ceEEEEEecCC---------------------ccEEEEEEcCCCCEEEEe-----eCCCCEEEE
Q psy4393         101 ----------------GKCLKTLKGHS---------------------NYVFCCNFNPQSNLIVSG-----SFDESVRIW  138 (247)
Q Consensus       101 ----------------~~~~~~~~~~~---------------------~~v~~~~~~~~~~~l~~~-----~~d~~i~v~  138 (247)
                                      |+....+++..                     +.-..++|-.||.++|+.     ...+.+++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            00001122111                     111247899999999883     333789999


Q ss_pred             ECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec---CCCeEEEEeCCCceeeeee---ccCCCCCeEEEEECCCCCEEE
Q psy4393         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPNGKYIL  212 (247)
Q Consensus       139 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~  212 (247)
                      |-. |..-..-....+--.+++|-|.|.++++..   .|+.|.+|.- +|-....+   .......+..++|+.++..|+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCcee
Confidence            976 432222122233345789999999888754   3556777753 33222222   122233488999999999998


Q ss_pred             E---EEcCCeEEEEECCCc
Q psy4393         213 A---ATLDNTLKLWDSKVV  228 (247)
Q Consensus       213 ~---~~~dg~i~vwd~~~~  228 (247)
                      .   ......|++|-....
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            8   444456999987653

>KOG1920|consensus

Probab=98.68  E-value=6.9e-06  Score=72.72  Aligned_cols=159  Identities=15%  Similarity=0.349  Sum_probs=103.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEec----CC-------------------CeEEEEEeccc--------------
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YD-------------------GKFEKTISGHK--------------   69 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~----~~-------------------~~~~~~~~~~~--------------   69 (247)
                      ..+|.+++|+||++.++..+..+++.+.+.    ..                   |+....+.+..              
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            467999999999999998888888877542    10                   11111222111              


Q ss_pred             -------CCeEEEEECCCCCEEEE-----EcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee---CCCC
Q psy4393          70 -------LGISDVAWSSDSRLLVS-----GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDES  134 (247)
Q Consensus        70 -------~~v~~~~~~~~~~~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~  134 (247)
                             ..=+.+.|.-||+++++     ......+++||-+ +.....-......-.+++|-|.|.++++-.   .++.
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence                   11234889999999887     3333799999976 433222222223345789999999998853   4556


Q ss_pred             EEEEECCC---CeEEEeecCCCCCeEEEEECCCCCEEEE---ecCCCeEEEEeCCCce
Q psy4393         135 VRIWDVRT---GKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRIWDTASGQ  186 (247)
Q Consensus       135 i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~v~d~~~~~  186 (247)
                      |.+|.-+.   +.-.-.++.....+..++|+.++..|++   ......|.+|-..+..
T Consensus       268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            88887532   2222223444455899999999999987   4455569999888754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.68  E-value=7.1e-07  Score=73.29  Aligned_cols=76  Identities=24%  Similarity=0.388  Sum_probs=62.8

Q ss_pred             CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      ..+.+.+++++|+...++.|+.||.|.+||...+.....  ...-..+.++|+|+|..+++|+..|.+.+||+.-...
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            456788999999999999999999999999987643322  2234567899999999999999999999999876543

>KOG2066|consensus

Probab=98.67  E-value=8.1e-06  Score=69.36  Aligned_cols=154  Identities=24%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             EEecCCCCeEEEEECCC-------------CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC-----CCE
Q psy4393          22 TLAGHTKAVSSVKFSPN-------------GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SRL   83 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~-------------~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~   83 (247)
                      -+..|.+.|.-..+.-+             |+++++|+.||.|.|-.+.+.+...... ...++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence            34456666666555444             9999999999999999887776555444 3567899999997     457


Q ss_pred             EEEEcCCCeEEEEECC---CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe----
Q psy4393          84 LVSGSDDKTLKIWELS---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV----  156 (247)
Q Consensus        84 l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i----  156 (247)
                      +++|+..| +.++.-.   ....+ .+....+.|.++.|.  |+++|-++.+| +++||+..++.+..++.....+    
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~  206 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL  206 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc
Confidence            88998888 6666522   11111 345567889999997  67888877655 8999999888776665433322    


Q ss_pred             --EEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         157 --SAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       157 --~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                        ..+.|.++.+ |+. |+..+|++..++
T Consensus       207 fpphl~W~~~~~-LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  207 FPPHLHWQDEDR-LVI-GWGDSVKICSIK  233 (846)
T ss_pred             CCCceEecCCCe-EEE-ecCCeEEEEEEe
Confidence              2456766554 343 455667777666

>KOG2314|consensus

Probab=98.67  E-value=3.1e-06  Score=69.01  Aligned_cols=178  Identities=14%  Similarity=0.230  Sum_probs=115.0

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-----------CCeEEEEECC
Q psy4393          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----------DKTLKIWELS   99 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~   99 (247)
                      +=+.|||-|.+|++--..| |.+|.-.+-...+.+.  ...|.-+.|+|..++|+|-+.           ...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            3478999999999876555 7889655433333332  345888999999999988642           2579999999


Q ss_pred             CceEEEEEecCC---ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--C
Q psy4393         100 SGKCLKTLKGHS---NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--D  174 (247)
Q Consensus       100 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d  174 (247)
                      +|...+.+....   ..-.-..|+.+++++|.-.. ..|.+|+..+...+..-...-..|....|+|.+.+||-=..  +
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            998777665422   22344689999999998765 56889987764433322233346778889998887764221  1


Q ss_pred             ---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         175 ---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                         ..+.+-.+.+++.++.....+-. =..+-|-.+|.+|+.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVs-DckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVS-DCKLHWQKSGDYLCV  410 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeee-ccEEEeccCCcEEEE
Confidence               23445555555444332111111 123567788888865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.66  E-value=3.5e-06  Score=69.14  Aligned_cols=185  Identities=21%  Similarity=0.211  Sum_probs=112.4

Q ss_pred             CCCeEEEEECCCCCEEEEEe---CC-CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEE-EcCCC--eEEEEECC
Q psy4393          27 TKAVSSVKFSPNGEWLASSS---AD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWELS   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~---~d-g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~v~d~~   99 (247)
                      ...+...+|+|++..++...   .. ..+.+++..++.....+. ....-...+|+|||++++- ...|+  .|.++|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            45677889999999776532   22 358888888776555544 2333445689999998764 44555  46666777


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-CC
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG  175 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg  175 (247)
                      .+.. ..+....+.-..-.|+|+|+.++..+. .|.  |.++|+..+.. ..+....+.-..-.|+|||++++..+. +|
T Consensus       271 ~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         271 GKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             CCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence            6653 334444443346689999999887654 343  66667765544 333322222236689999998887664 34


Q ss_pred             e--EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc
Q psy4393         176 L--CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       176 ~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  216 (247)
                      .  |.+.|+.++...+.+.  .......-.|.|+++.++..+.
T Consensus       349 ~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         349 QWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEecc
Confidence            4  6666766554322221  1122233457777777765543

>KOG2314|consensus

Probab=98.65  E-value=6.9e-06  Score=67.09  Aligned_cols=195  Identities=15%  Similarity=0.222  Sum_probs=116.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCceEEEE
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCLKT  106 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~  106 (247)
                      -+.||.|++++|.... ..|.||+...-.....-.-...+|..+.|+|.++.||.=...     ..+.+..+.+++.++.
T Consensus       310 ~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             eEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence            3679999999987665 468888865433322222334568899999998888753321     2466666666655544


Q ss_pred             EecCCccEEEEEEcCCCCEEEEe----------eCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC---
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSG----------SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---  173 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~----------~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  173 (247)
                      ..-+.-.=..+.|-.+|.+|..-          +.-..+.++.++.....-..-.-...+...+|.|.|..+++-+.   
T Consensus       389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~  468 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV  468 (698)
T ss_pred             ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence            32221111234555666665532          11123455555543321111122456788899999987766443   


Q ss_pred             CCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEE---cCCeEEEEECCC
Q psy4393         174 DGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDSKV  227 (247)
Q Consensus       174 dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~  227 (247)
                      ...+.+|.+.+. ........-.....+.+.|+|.|++++.+.   ..|.+.++|..-
T Consensus       469 k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            346888877632 111111111223457799999999998765   468999999874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=0.00022  Score=58.24  Aligned_cols=202  Identities=14%  Similarity=0.164  Sum_probs=137.8

Q ss_pred             EEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC---CCeEEEEECCCceEEEE
Q psy4393          31 SSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKT  106 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~  106 (247)
                      ..++.++.+..++.. ..++.|.+.|.............. ....++++|+++.+..+..   ++.+.+.|..+.+....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            466788888865544 445889999976655555443322 4567899999987766655   68899999888887776


Q ss_pred             EecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeEEE-----eecCCCCCeEEEEECCCCCEEEEecCC---CeE
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYD---GLC  177 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i  177 (247)
                      ......+ ..+.++|+++.++... .++.+.++|........     ....... -..+.++|++..+++....   +.+
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceE
Confidence            5544344 6789999999666654 67889999977654442     1222222 2457899999976655443   589


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEEc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~  235 (247)
                      ...|..++.............-..+..+|+|..+..... .+.+.+-|..+........
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            999998877665422211112345789999999988854 4899999988765544433

>KOG2066|consensus

Probab=98.56  E-value=2e-05  Score=67.14  Aligned_cols=183  Identities=17%  Similarity=0.255  Sum_probs=123.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ...++|++++  +++++-|+-+|.|++++.... . .....|...      ..+|.++++|+.||.+.+-.+-+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456666665  678999999999999987433 2 222223322      56799999999999999988877766555


Q ss_pred             EecCCccEEEEEEcCC-----CCEEEEeeCCCCEEEEECCC-C-eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         107 LKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVRIWDVRT-G-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      +. ..-++..++++|+     ...+++|+..| +.++.-+- + ..........++|.++.|.  |.++|-+..+| +++
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            44 3345788899997     56789998888 77765331 1 1111355667899999994  67888887666 799


Q ss_pred             EeCCCceeeeeeccCCCC-----CeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         180 WDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ||..+.+.+..+......     --..+.|.++.++++.-+  .+|+|...+
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~  233 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DSVKICSIK  233 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence            999887765544332211     012467887765554433  467777665

>KOG1275|consensus

Probab=98.56  E-value=1.2e-06  Score=75.16  Aligned_cols=142  Identities=16%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC---------CCeEEEEECCCceEEEEE
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---------DKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~  107 (247)
                      .+++.+.+|...|+|.+-|..+.+...++..|.+.+.++.  -.|+.|++++.         |..|+|||++.-+.+..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            4578899999999999999999999999999999988654  46889998875         456889999876655555


Q ss_pred             ecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEE---CCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         108 KGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD---VRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d---~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      .-+.++ .-+.|.|. ...++..+..|...+.|   +.+.. .+..+......+..+++++++..++.|..+|.|.+|.
T Consensus       263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            444333 23566774 35677788899999998   33321 2233334445589999999999999999999999996

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=2.9e-06  Score=64.63  Aligned_cols=196  Identities=22%  Similarity=0.436  Sum_probs=126.0

Q ss_pred             CCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCeEE-----------------------------------------EE
Q psy4393          28 KAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFE-----------------------------------------KT   64 (247)
Q Consensus        28 ~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~-----------------------------------------~~   64 (247)
                      ..|..+.|-.++.  .++..+.|.++++|-+......                                         +.
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4577888866543  4566678999999976432100                                         00


Q ss_pred             -E-ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce---EEEEEecC-----CccEEEEEEcCC-CCEEEEeeCCC
Q psy4393          65 -I-SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---CLKTLKGH-----SNYVFCCNFNPQ-SNLIVSGSFDE  133 (247)
Q Consensus        65 -~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~  133 (247)
                       . ..|...+.++.+..|.+.++++ .|-.|.+|+++-..   .+-.++.+     ...|.+..|+|. .+.+...+..|
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             eccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence             0 1244457788898888877766 57789999986432   11222332     234677788885 45677778899


Q ss_pred             CEEEEECCCCeE------EEee----------cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce-eeeeeccC--
Q psy4393         134 SVRIWDVRTGKC------LKTL----------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDD--  194 (247)
Q Consensus       134 ~i~v~d~~~~~~------~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~--  194 (247)
                      .|++-|+|....      +...          ..-...|..+.|+++|+++++-. --++++||....+ ++++...+  
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHH
Confidence            999999984321      1111          11123578899999999888654 3579999987643 33333111  


Q ss_pred             ---------CCCCe---EEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         195 ---------DNPPV---SFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       195 ---------~~~~v---~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                               +...|   -.+.|+.|.+.+++|+..+..-+|-.
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                     11122   23789999999999999988888863

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.52  E-value=0.00026  Score=58.30  Aligned_cols=178  Identities=20%  Similarity=0.229  Sum_probs=97.0

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE-------ecCCccEEEEEEcCC
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-------KGHSNYVFCCNFNPQ  122 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~  122 (247)
                      .|++|+.. |+....+.-....+..+.|+.+.+ |++...||.+++||+.. +....+       .-....+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence            58888864 555555554457899999998654 55666899999999863 321111       111111222223334


Q ss_pred             CCEEEEeeCCCCEEEEECCCCe-EEEeecCCCC---------CeEE-EEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         123 SNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSD---------PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       123 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~---------~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      |-.+.  ..++.+.+..-.... ..+.+..-..         .... ..++.+....+....++.+.+.+....+.    
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----  212 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----  212 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence            43333  334445444322211 1111110000         0000 12333444444444445555333222111    


Q ss_pred             ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       192 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                       .....++..+++||+|++||.-..+|.+.|...+-.+.+..+...
T Consensus       213 -i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  213 -IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             -ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence             112357899999999999999999999999998877777776665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008|consensus

Probab=98.52  E-value=3.9e-08  Score=81.05  Aligned_cols=199  Identities=21%  Similarity=0.294  Sum_probs=125.8

Q ss_pred             CCCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCeEE--EEEecccCCeEEEEECC-CCCEEEEEcC----CCeEEEEE
Q psy4393          27 TKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSS-DSRLLVSGSD----DKTLKIWE   97 (247)
Q Consensus        27 ~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~v~d   97 (247)
                      ...+.|+++..+.  ..++.|..+|.|-+-...+....  ....++...+++++|.+ |.+.|++|-.    |..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4557777776543  46788899999988776543322  23445667799999998 5566666532    45789999


Q ss_pred             CCCce--E--EEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCCEEEEe
Q psy4393          98 LSSGK--C--LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSS  171 (247)
Q Consensus        98 ~~~~~--~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  171 (247)
                      +.++-  +  ...+.+ .......++|..+.+++.+|...+.++++|+|.... .........+..+.++| .+.++++-
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceecc
Confidence            98751  1  111222 223345788888889999999999999999984321 11111122345566777 66677655


Q ss_pred             cCCCeEEEEe-CCCcee-eeeeccCC---CCCeEEEEECCCCC-EEEEEEc-CCeEEEEECCC
Q psy4393         172 SYDGLCRIWD-TASGQC-LKTLIDDD---NPPVSFVKFSPNGK-YILAATL-DNTLKLWDSKV  227 (247)
Q Consensus       172 ~~dg~i~v~d-~~~~~~-~~~~~~~~---~~~v~~~~~s~~~~-~l~~~~~-dg~i~vwd~~~  227 (247)
                      . ||.+.+|| .++-+. +.......   ...+..++|.|-.. .+++.+. .++|+++|+..
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            4 99999999 443221 22221111   12477899998643 4445554 57999999764

>KOG1645|consensus

Probab=98.52  E-value=7.7e-06  Score=64.27  Aligned_cols=212  Identities=14%  Similarity=0.152  Sum_probs=119.1

Q ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCC
Q psy4393          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~  100 (247)
                      +.+|...|..++|+|..+ ++..++.+..|+|.|+++.........+ ..+.+++|+-+. .+|.+|..+|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            346788899999999887 5677889999999999988877777665 679999998765 4577888899999999976


Q ss_pred             ce-EEEEEec--CCccEEEEEE------cCCCCEEEEeeCCCCEEEEECCCCe--EEEeec-CCCCCeEEEEECCCCCEE
Q psy4393         101 GK-CLKTLKG--HSNYVFCCNF------NPQSNLIVSGSFDESVRIWDVRTGK--CLKTLP-AHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       101 ~~-~~~~~~~--~~~~v~~~~~------~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l  168 (247)
                      .+ .+..+.+  ...+|..++.      .+.+.+++....  .+..|+.....  ...... ...+.+.++++++..+++
T Consensus       268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~  345 (463)
T KOG1645|consen  268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL  345 (463)
T ss_pred             CCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence            43 1222221  1122333222      233444444333  23455543211  111121 224567777777765655


Q ss_pred             EEecCCC-------eEEE-EeCCCceeeee----eccCCCCCe---EEEEECCCCCEEEE-EEcCCeEEEEECCCcceEE
Q psy4393         169 VSSSYDG-------LCRI-WDTASGQCLKT----LIDDDNPPV---SFVKFSPNGKYILA-ATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       169 ~~~~~dg-------~i~v-~d~~~~~~~~~----~~~~~~~~v---~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~  232 (247)
                      +......       .+-. -|...|..+-.    .......+.   ..+.-.++..+++. +...+.+.+||....+.+-
T Consensus       346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ  425 (463)
T KOG1645|consen  346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ  425 (463)
T ss_pred             EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence            5443221       1111 12222222111    101000011   11222455566654 4456799999998776554


Q ss_pred             EEccC
Q psy4393         233 ICSTP  237 (247)
Q Consensus       233 ~~~~~  237 (247)
                      .++..
T Consensus       426 ~l~~~  430 (463)
T KOG1645|consen  426 TLALS  430 (463)
T ss_pred             ecccC
Confidence            44443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.51  E-value=3.1e-05  Score=63.70  Aligned_cols=165  Identities=19%  Similarity=0.212  Sum_probs=102.3

Q ss_pred             CeEEEEEecccCCeEEEEECCCCCEEEEE---cCC-CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee-CCC
Q psy4393          59 GKFEKTISGHKLGISDVAWSSDSRLLVSG---SDD-KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDE  133 (247)
Q Consensus        59 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~  133 (247)
                      +.....+......+..-.|+|++..++..   ... ..+.++++.+++....+. ..+.-....|+|+|+.++... .||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            44444555455567778899999876544   222 468899998876554443 222334568999998887654 455


Q ss_pred             --CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CCC--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393         134 --SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       134 --~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~  208 (247)
                        .|+++|+..++. ..+....+.-..-.|+|||+.++-.+ ..|  .|.++|...++..........  -..-.|+|||
T Consensus       261 ~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG  337 (425)
T COG0823         261 SPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDG  337 (425)
T ss_pred             CccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCC
Confidence              477788887763 33433333334557999999877654 344  566667776654222222111  1256799999


Q ss_pred             CEEEEEEcC-Ce--EEEEECCC
Q psy4393         209 KYILAATLD-NT--LKLWDSKV  227 (247)
Q Consensus       209 ~~l~~~~~d-g~--i~vwd~~~  227 (247)
                      ++++..+.. |.  |.+.|...
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCC
Confidence            999987753 44  55555543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.50  E-value=5.7e-05  Score=61.23  Aligned_cols=198  Identities=15%  Similarity=0.164  Sum_probs=124.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---------------CeEEEEecCCCeEEEEEecccCC--eE-EEEECCCCCEEEEEc
Q psy4393          27 TKAVSSVKFSPNGEWLASSSAD---------------KLIKIWGAYDGKFEKTISGHKLG--IS-DVAWSSDSRLLVSGS   88 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~d---------------g~v~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~   88 (247)
                      ...|.-+.|+|.+++|.+=...               ..+.+||...+..+..+.+...+  .. -+.|+.+.++++-. 
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            3568889999999999874432               24899999998888776654443  33 56788887766544 


Q ss_pred             CCCeEEEEECCCceE-EEEEecC-CccEEEEEEcCCCC--EEEE-----eeCCCCEEEEECCCCeEEEeecCCCCCeEEE
Q psy4393          89 DDKTLKIWELSSGKC-LKTLKGH-SNYVFCCNFNPQSN--LIVS-----GSFDESVRIWDVRTGKCLKTLPAHSDPVSAV  159 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~~~~~~--~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~  159 (247)
                      -...+.++++ +... ...++.. ...+....|+|.++  .|++     .+....+++|.+..++.+....-....--.+
T Consensus       150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL  228 (561)
T COG5354         150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL  228 (561)
T ss_pred             ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence            2346888997 3321 1111111 23466777888643  2332     4567789999988666544322111122357


Q ss_pred             EECCCCCEEEEec-----------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cCCeEEEEECC
Q psy4393         160 HFNRDGSLIVSSS-----------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSK  226 (247)
Q Consensus       160 ~~~~~~~~l~~~~-----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~  226 (247)
                      .|++.|++|++-.           ....+.++++.........  .-..+|....|.|+++.+++.+  .+-.+.++|.+
T Consensus       229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccc
Confidence            8888888664321           1234667777643322221  3357899999999998887665  56788899887


Q ss_pred             Cc
Q psy4393         227 VV  228 (247)
Q Consensus       227 ~~  228 (247)
                      ..
T Consensus       307 ~N  308 (561)
T COG5354         307 GN  308 (561)
T ss_pred             cc
Confidence            75

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.50  E-value=8.4e-05  Score=61.07  Aligned_cols=189  Identities=12%  Similarity=0.092  Sum_probs=108.9

Q ss_pred             EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEE-EEECC--CCCEEEEEcCCCeEEEEECCCceEEEEEecCCc-----
Q psy4393          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-VAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-----  112 (247)
Q Consensus        41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----  112 (247)
                      .++.+..+|.+.-+|..+++.............. ..-+|  .+..++.+..++.+..+|.++++..........     
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence            4445566777777777777766655432110000 00112  133566677788888889888875543321100     


Q ss_pred             --cEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee
Q psy4393         113 --YVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       113 --~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                        ....+..+|  .+..++.++.+|.+..+|..+++.+.......  ...+..  .+..++.++.+|.+..+|..+++.+
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAV--DGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence              000111122  24566677788999999999998766543211  111222  4566777888999999999988653


Q ss_pred             eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       189 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      =...............  .+..|+.++.||.|.+.|.++++.+-...
T Consensus       318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            2211111111111112  25678889999999999998887655443

>KOG1645|consensus

Probab=98.48  E-value=2.2e-06  Score=67.20  Aligned_cols=94  Identities=21%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             EEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCC-CEEEE
Q psy4393          51 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVS  128 (247)
Q Consensus        51 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  128 (247)
                      +++.+..+-+....+..+...|.+++|+|..+ ++..++.+..|++.|+++...+.....+ ..+++++|+-+. +.++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444333344455666799999999766 6788899999999999998888777766 678999998754 67788


Q ss_pred             eeCCCCEEEEECCCCeE
Q psy4393         129 GSFDESVRIWDVRTGKC  145 (247)
Q Consensus       129 ~~~d~~i~v~d~~~~~~  145 (247)
                      |..+|.|.+||++..+.
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            88999999999997653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.46  E-value=3.1e-06  Score=69.61  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=62.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .....|.+++++|+.++|+.|+.||.|.+||...+...  ........+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46778999999999999999999999999998655322  2234556788999999999999999999999998643

>KOG4649|consensus

Probab=98.45  E-value=0.00027  Score=52.99  Aligned_cols=142  Identities=12%  Similarity=0.089  Sum_probs=94.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC  117 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  117 (247)
                      ..+++.|+..+.+.--|..+++...... +.......+.   -|++++.|...|.+++.+.++|.....+......-...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            3466777777888777887777655432 1121222222   36789999999999999999997665555333222234


Q ss_pred             EEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      ...+++.++..|+.|+..+..|.++..++...+...+...+-++.|-...|+++...|.+..-...
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            567889999999999999999999988888776554444444566633344445555655444333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.43  E-value=0.00034  Score=53.22  Aligned_cols=199  Identities=17%  Similarity=0.256  Sum_probs=111.5

Q ss_pred             EEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          22 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      .+.+-...++.++|.|+.+ ++++....+.|..++. +++....+.-.. .-...+++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556667799999999766 5556677788888886 566666654332 347788888888777777678999888873


Q ss_pred             Cce------EEEEEe-----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---CeEEEe--------ecCCCCCeE
Q psy4393         100 SGK------CLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKT--------LPAHSDPVS  157 (247)
Q Consensus       100 ~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~--------~~~~~~~i~  157 (247)
                      ...      ....+.     .+...+..++|++.++.++.+-+.....+|.++.   ...+..        .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            211      112221     1233478899999888888877776677777654   111111        111223467


Q ss_pred             EEEECCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCC--------CCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         158 AVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       158 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      ++.++|.. .+++.......+..+| .+|+.+..+....        ..+-..++|+++|. |+..++-+...+|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence            88999864 5666677778888888 5566554432221        23457899999985 4444455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.42  E-value=8.2e-05  Score=61.13  Aligned_cols=191  Identities=12%  Similarity=0.022  Sum_probs=109.0

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-CeE------EEEECC--CCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GIS------DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~------~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      .+..+++++.+|.+.-+|..+++.......... ...      .+.-.|  ++..++.++.++.+.-+|.++|+.+...+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            356777778889999999988887776543220 000      000111  35667788889999999999998766554


Q ss_pred             cCCccEEE-EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEE-EEECC--CCCEEEEecCCCeEEEEeCCC
Q psy4393         109 GHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-VHFNR--DGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       109 ~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      .... +.+ ...  .+..++.+..++.+..+|..+|+.+............ ..-+|  .+..++.++.+|.+..+|..+
T Consensus       148 ~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        148 VAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             CCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            3322 211 111  2345667778899999999999987776532111000 00011  123466677889898889888


Q ss_pred             ceeeeeeccCCC---C---CeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         185 GQCLKTLIDDDN---P---PVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       185 ~~~~~~~~~~~~---~---~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ++..-.......   .   ....+.-+|  .+..++.++.+|.+.-+|..+++.+
T Consensus       225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            764322110000   0   000001111  2345666666777777777665543

>KOG2114|consensus

Probab=98.36  E-value=3.7e-05  Score=66.04  Aligned_cols=156  Identities=21%  Similarity=0.330  Sum_probs=106.1

Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCCC-----CEEEEECCC------C
Q psy4393          76 AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDE-----SVRIWDVRT------G  143 (247)
Q Consensus        76 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~------~  143 (247)
                      .|++.+..++.|+.+|.|.+++-. -+..+.++++... +..+-...+.+++++.+.|+     .+++||+..      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            478889999999999999887742 3344666666655 44343344446777766655     489999853      2


Q ss_pred             eEE---Eee----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC---CceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         144 KCL---KTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       144 ~~~---~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      +++   ..+    +..+.|+.+++.+.+-..+++|-.+|.|..+.-+   ..............+|+.+++..+++.++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            233   111    1235678899999998999999999999888432   222233444556789999999999988555


Q ss_pred             EEcCCeEEEEECCCcceEE
Q psy4393         214 ATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       214 ~~~dg~i~vwd~~~~~~~~  232 (247)
                      ..+..+|.+|......|..
T Consensus       189 v~Tt~~V~~y~l~gr~p~~  207 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSL  207 (933)
T ss_pred             EEecceeEEEEecCCCcce
Confidence            5556788888877555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.34  E-value=0.00019  Score=60.74  Aligned_cols=185  Identities=12%  Similarity=0.098  Sum_probs=113.5

Q ss_pred             EEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC----CeEEEEECCCceEEEEE
Q psy4393          33 VKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTLKIWELSSGKCLKTL  107 (247)
Q Consensus        33 ~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~  107 (247)
                      +-++|||+.+.. .-..+.+.+.|..+.+....+.-.. ....++++|+|+++++.+.+    ..+...+..+......+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            446677775532 3345667777877766655554322 44667899999998877532    22333332222211111


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-----CeEEEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEe
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWD  181 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d  181 (247)
                      ...  .+  -.+.++|+....  .++.|.++|.++     ...+..+... .....+.++|||+++++++ .+..+.|+|
T Consensus       277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            110  00  023446666555  356799999998     3455555543 3457789999999887665 478999999


Q ss_pred             CCCcee------------eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         182 TASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       182 ~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +.+.+.            ...... ...| ...+|+++|.-..+-..|..|..||...
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevev-GlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeecc-CCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            987542            111111 2223 3478999998777778899999999765

>KOG3617|consensus

Probab=98.33  E-value=8.9e-06  Score=69.78  Aligned_cols=186  Identities=13%  Similarity=0.202  Sum_probs=116.2

Q ss_pred             EEECCCCCEEEEEe----CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          33 VKFSPNGEWLASSS----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        33 ~~~s~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      ..|+|...+++.++    ..|.|.||- ++|+....+. .+..+++++|+|..-.++.+-.-|.+.+|...+.+.-....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            46999999888765    468888883 4555443332 24457789999988788888888999999987766544556


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe--ecCCC--C--CeEEEEECCCCC------EEEEecCCCe
Q psy4393         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT--LPAHS--D--PVSAVHFNRDGS------LIVSSSYDGL  176 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~--~--~i~~~~~~~~~~------~l~~~~~dg~  176 (247)
                      .|..++..+.|+|+|..+.++..-|.+.+|.+..-..+..  +-.|+  .  ...|...++++.      ..++.+.+..
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a  178 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA  178 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence            7888999999999999999999999999997652211111  11111  1  123445556532      1233333332


Q ss_pred             EE-EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         177 CR-IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       177 i~-v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +- .++-+..  .......+       .=.|+|..++.++.+|+|+--|-+...
T Consensus       179 lD~~fnwk~~--~a~rs~~k-------sgv~~g~~F~~~~~~GtVyyvdq~g~~  223 (1416)
T KOG3617|consen  179 LDEPFNWKES--LAERSDEK-------SGVPKGTEFLFAGKSGTVYYVDQNGRQ  223 (1416)
T ss_pred             hcccccCccc--hhhccccc-------cCCCCCcEEEEEcCCceEEEEcCCCcE
Confidence            22 2221110  00000001       124777788888888888888754443

>KOG4640|consensus

Probab=98.32  E-value=3.9e-06  Score=69.45  Aligned_cols=93  Identities=20%  Similarity=0.292  Sum_probs=77.1

Q ss_pred             cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeE-EEEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      .+.-+.|+|.-.++|++..+|.+-+..+. .+.+..++.+...++ +++|.|||+.||+|-.||+|++.|+.++..+..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46678999999999999999999999887 777888886666676 9999999999999999999999999998877664


Q ss_pred             ccCCCCCeEEEEECC
Q psy4393         192 IDDDNPPVSFVKFSP  206 (247)
Q Consensus       192 ~~~~~~~v~~~~~s~  206 (247)
                      .......|..+-|++
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence            333345667777763

>KOG3617|consensus

Probab=98.28  E-value=2.7e-05  Score=66.99  Aligned_cols=70  Identities=16%  Similarity=0.303  Sum_probs=62.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      +++++|+|..-.|+.|-..|.+.+|...+.+.-.....|..++..+.|+|+|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999998889999999999999987776666677899999999999999999999999999999765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.00013  Score=59.08  Aligned_cols=193  Identities=19%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             CCCCCEEEEEe---------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          36 SPNGEWLASSS---------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        36 s~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      |||+++++...         ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57888776532         235678899888665443332 55688899999999988775 57899998877654332


Q ss_pred             EecC-----------------CccEEEEEEcCCCCEEEEeeCC-CCE---------------------------------
Q psy4393         107 LKGH-----------------SNYVFCCNFNPQSNLIVSGSFD-ESV---------------------------------  135 (247)
Q Consensus       107 ~~~~-----------------~~~v~~~~~~~~~~~l~~~~~d-~~i---------------------------------  135 (247)
                      ....                 -+.-..+.|+|+++.|+....| ..+                                 
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2111                 1112457799999988876433 222                                 


Q ss_pred             --EEEECCCCeEEEe--e---cCCCCCeEEEEECCCCCEEEEec--CCC---eEEEEeCCCceeeeeeccCCCC---CeE
Q psy4393         136 --RIWDVRTGKCLKT--L---PAHSDPVSAVHFNRDGSLIVSSS--YDG---LCRIWDTASGQCLKTLIDDDNP---PVS  200 (247)
Q Consensus       136 --~v~d~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l~~~~--~dg---~i~v~d~~~~~~~~~~~~~~~~---~v~  200 (247)
                        .++|+.+++....  .   ......+..+.|.+++..++..-  .+.   .+.++|..+++...........   ...
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence              2233333322110  0   11223467788888888443332  222   4667787766543322221111   112


Q ss_pred             EEEEC-CCCC-EEEEEEcCC--eEEEEECCCcce
Q psy4393         201 FVKFS-PNGK-YILAATLDN--TLKLWDSKVVTP  230 (247)
Q Consensus       201 ~~~~s-~~~~-~l~~~~~dg--~i~vwd~~~~~~  230 (247)
                      ...|. +++. +|.....||  .|.+++...+.+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~  272 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP  272 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence            34443 5554 444555677  566666666553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.27  E-value=0.00071  Score=56.03  Aligned_cols=146  Identities=22%  Similarity=0.242  Sum_probs=81.6

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .+....-....+.++|+|+.++.+ .+|.-.++.....+...  .   +...++.|.+. +.+++-..+..|.++.--+.
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--F---GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--E---EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--c---CceeEEEEecC-ccEEEEECCCeEEEEEcCcc
Confidence            333445567899999999998885 57888888754433322  1   22446789984 45777767888999633222


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      ...+.++... .+..+ |.  |.++...+. +.|.+||..+++.+..+...  +|..+.|++++.+++..+.+ .+.+++
T Consensus       100 ~~~k~i~~~~-~~~~I-f~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  100 EVVKSIKLPF-SVEKI-FG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             -TT-----SS--EEEE-E---SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             ccceEEcCCc-ccceE-Ec--CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            2222333221 22222 22  676766654 47999999999999988754  38899999999999888755 455554


Q ss_pred             C
Q psy4393         182 T  182 (247)
Q Consensus       182 ~  182 (247)
                      .
T Consensus       172 ~  172 (443)
T PF04053_consen  172 Y  172 (443)
T ss_dssp             E
T ss_pred             e
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=98.27  E-value=5.4e-05  Score=63.69  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      |...|.=-+++..+++++.|+.-|.+++|+-..+.....-. +....+..+..+++..++|.|+..|.|.++.+..+..-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44556666788889999999999999999876655433222 23444566778888888999999999999987653211


Q ss_pred             --EEE----ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393         105 --KTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (247)
Q Consensus       105 --~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (247)
                        ..+    +.|...|.+++|++++..+++|...|.|.+-.+.+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              111    23567899999999999999999999998887766

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.24  E-value=0.00011  Score=64.13  Aligned_cols=140  Identities=24%  Similarity=0.336  Sum_probs=97.7

Q ss_pred             CCEEEEE-cCCCeEEEEECCCceEEEEEecCCcc-EEEEEEcCC-------CCEEEEeeCCCCEEEEECCCCe-EEEeec
Q psy4393          81 SRLLVSG-SDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQ-------SNLIVSGSFDESVRIWDVRTGK-CLKTLP  150 (247)
Q Consensus        81 ~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~v~d~~~~~-~~~~~~  150 (247)
                      .++|+.. .....++-.|++.|+.+..++.+... |.  .+.|+       ....+.|-.+..+..||.|... .+..-.
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3444433 34567888899999999888877643 43  34443       2345667778899999998643 111111


Q ss_pred             ----CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         151 ----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       151 ----~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                          ......+|++-+.+| ++|+|+.+|.|++||- .++.-++.+..-+.||..+..+.||++|++.+ +..|.+++.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence                123356788877777 5899999999999994 44444555556678999999999999998877 567777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.00085  Score=57.00  Aligned_cols=122  Identities=12%  Similarity=0.189  Sum_probs=75.5

Q ss_pred             CeEEEEecCC-----CeEEEEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCCceE------------EEEEecC
Q psy4393          49 KLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGKC------------LKTLKGH  110 (247)
Q Consensus        49 g~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~------------~~~~~~~  110 (247)
                      +.|.+.|..+     ......+. -......+.++|||+++++++. +..+.++|+.+.+.            .....-.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            3466666554     22333332 2344677899999998876655 88999999987442            2233322


Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCCEEEEECCC----------CeEEEeecCCCCCeEEE-----EECCCCCEEEEec
Q psy4393         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----------GKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSS  172 (247)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~  172 (247)
                      .++ ....|+++|+...+-.-|..|..||+..          ...+..+..|-.+-.-.     .-.|+|++|++..
T Consensus       375 lGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        375 LGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            333 3568999998888888899999999875          22344444443332211     1256788877653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.18  E-value=0.0014  Score=55.37  Aligned_cols=193  Identities=17%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccC------CeE--EEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecC
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS--DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH  110 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  110 (247)
                      +..++.++.++.|.-.|..+++..........      .+.  .+... ++..++.++.++.+.-+|.++++.+......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566677789999999988887766543221      000  01111 2267778888999999999999887665433


Q ss_pred             Ccc--EEEEEEcC--CCCEEEEee---------CCCCEEEEECCCCeEEEeecCCCC--------------------Ce-
Q psy4393         111 SNY--VFCCNFNP--QSNLIVSGS---------FDESVRIWDVRTGKCLKTLPAHSD--------------------PV-  156 (247)
Q Consensus       111 ~~~--v~~~~~~~--~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~--------------------~i-  156 (247)
                      ...  -..+.-+|  .+..++.++         .++.+..+|..+|+.+........                    .+ 
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw  219 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW  219 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence            220  00011111  123454543         357899999999988776543211                    01 


Q ss_pred             EEEEECCCCCEEEEecCCC------------------eEEEEeCCCceeeeeeccCCC---------CCeEEEEE-CCCC
Q psy4393         157 SAVHFNRDGSLIVSSSYDG------------------LCRIWDTASGQCLKTLIDDDN---------PPVSFVKF-SPNG  208 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~~~~---------~~v~~~~~-s~~~  208 (247)
                      ....+++.+..++.++.++                  .+..+|..+++.+=.+.....         .++. ... .-++
T Consensus       220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~-~~~~~~~g  298 (488)
T cd00216         220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL-ADIKPKDG  298 (488)
T ss_pred             CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE-EeccccCC
Confidence            1244555566777776554                  688889998876533221110         1110 111 1233


Q ss_pred             C---EEEEEEcCCeEEEEECCCcceEEE
Q psy4393         209 K---YILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       209 ~---~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .   .++.++.+|.+...|.++++++=.
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            3   677888899999999999876644

The alignment model contains an 8-bladed beta-propeller.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.15  E-value=0.00062  Score=58.51  Aligned_cols=186  Identities=15%  Similarity=0.195  Sum_probs=101.0

Q ss_pred             CCeEEEEECCCCCEEEEEe------CCCeEEEEecC-CCeEEEEEecccCCeEEEEECCCCCEEEEEcCC----------
Q psy4393          28 KAVSSVKFSPNGEWLASSS------ADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD----------   90 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~------~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   90 (247)
                      ..+.+.+++|+|+.++...      .|..-.+|-.. .+.......+  ...+...|+|+|+.+.+....          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3577889999999887654      24444455332 2223222332  237788999998877776432          


Q ss_pred             --CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEE---EECCCCeE-E---EeecC-CCCCeEEEE
Q psy4393          91 --KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI---WDVRTGKC-L---KTLPA-HSDPVSAVH  160 (247)
Q Consensus        91 --~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~-~---~~~~~-~~~~i~~~~  160 (247)
                        +.+.+.++..+....   .....|..+.|+|||..++... ++.|++   -....|.. +   ..+.. -...+..+.
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence              223333333322211   2244688999999999888765 466666   44334431 1   11222 223357789


Q ss_pred             ECCCCCEEEEecCCCeEEEE--eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393         161 FNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  222 (247)
                      |..++.++ ++..++...+|  ++...............++..++-+++  .++.++.+|.+.+
T Consensus       504 W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             EecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            99988854 55544444444  444322111011112345666666653  4556666664444

>KOG1832|consensus

Probab=98.15  E-value=1.7e-06  Score=74.41  Aligned_cols=134  Identities=22%  Similarity=0.335  Sum_probs=104.0

Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC--eEEEEe
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWD  181 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d  181 (247)
                      .+.++.+.....|++|+.+.+.++.|+..|.|++|+..+|........|..+++-+.-+.+|..+++.+.-.  ...+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            445666777889999999999999999999999999999998888899999999999999998777655433  456898


Q ss_pred             CCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393         182 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNY  242 (247)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  242 (247)
                      +.+. ...+.+. .    -.++.|+..-++-+.|+....+.+||.++..|+.+|..+...++
T Consensus      1174 ~~s~~~~~Hsf~-e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD-E----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             cccccCcccccc-c----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence            8652 2233322 1    24577888766667777778999999999998888766655443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.10  E-value=0.0027  Score=50.06  Aligned_cols=206  Identities=13%  Similarity=0.111  Sum_probs=118.9

Q ss_pred             EEEECCCCCEEEEEe--CCCeEEEEecCCCeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECC-CceEEEEE
Q psy4393          32 SVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELS-SGKCLKTL  107 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~-~~~~~~~~  107 (247)
                      .++++.||++++...  ---.|.|-|+..++....+...  ++..+  .|. .+.+.+.+.||.+.-..+. .|+.....
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            457888998877644  3357888999888887777532  23222  222 2457777788888777776 34443221


Q ss_pred             ----ecCCccE-EEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE--EeecCC----------CCCeEEEEECCCCCEEEE
Q psy4393         108 ----KGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--KTLPAH----------SDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       108 ----~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~----------~~~i~~~~~~~~~~~l~~  170 (247)
                          ....+++ ..-.+...+..++..+.+|.|+-.|+......  ..+..-          .+...-+++++....|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence                1111222 22334445556666788898888888755421  112110          122334677775555544


Q ss_pred             ecC---CC-------eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEEccCC
Q psy4393         171 SSY---DG-------LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       171 ~~~---dg-------~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      --.   ++       .|.++|+.+++.+.++...+  ++.+++.+.+.+ +|++.+ .++.+.+||..+++++.....-.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            211   11       58888999999888775432  456788888766 665554 57899999999998887766554


Q ss_pred             cccce
Q psy4393         239 NLNYF  243 (247)
Q Consensus       239 ~~~~~  243 (247)
                      +..++
T Consensus       333 ~~~~l  337 (342)
T PF06433_consen  333 ETPTL  337 (342)
T ss_dssp             SS--E
T ss_pred             CCceE
Confidence            44333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.08  E-value=0.0043  Score=51.42  Aligned_cols=199  Identities=18%  Similarity=0.198  Sum_probs=107.1

Q ss_pred             eEEEEECCCCCEEEEE-eCCC----eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-----------CeE
Q psy4393          30 VSSVKFSPNGEWLASS-SADK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----------KTL   93 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i   93 (247)
                      +....++|+|+++|.+ +..|    .++++|+.+++........ .....+.|.++++.++....+           ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999998754 3334    5999999998765432111 112238999998877655432           247


Q ss_pred             EEEECCCceE--EEEEecCCcc--EEEEEEcCCCCEEEEeeCC----CCEEEEECCCC----eEEEeecCC-CCCeEEEE
Q psy4393          94 KIWELSSGKC--LKTLKGHSNY--VFCCNFNPQSNLIVSGSFD----ESVRIWDVRTG----KCLKTLPAH-SDPVSAVH  160 (247)
Q Consensus        94 ~v~d~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~----~~~~~~~~~-~~~i~~~~  160 (247)
                      +.|.+.+...  ...+......  ...+..++++++++.....    ..+.+.|+..+    .....+... .+....+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            7888776532  2334333322  5577889999987754322    34788888764    222333222 22223333


Q ss_pred             ECCCCCEEEEec---CCCeEEEEeCCCcee--eeeeccCCCCCeEEEEECCCCCEEEEEE-cCC--eEEEEECC-Ccce
Q psy4393         161 FNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDN--TLKLWDSK-VVTP  230 (247)
Q Consensus       161 ~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~vwd~~-~~~~  230 (247)
                      .. .+.+++...   ..+.|...++.....  .......+...+.-..+...+.+|+... .++  +|+++|.. ....
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            33 444444332   235677777776542  1212222222222233344455666554 444  78999998 4433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640|consensus

Probab=98.07  E-value=3.9e-05  Score=63.74  Aligned_cols=94  Identities=21%  Similarity=0.345  Sum_probs=75.4

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEE-EEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (247)
                      ...+..+.|+|.-..||.+..+|.+.++.+. .+.+..+..+...+. +++|.|||+++|.|-.||.|++.|...+..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457778999999999999999999888887 566667765555555 99999999999999999999999999987766


Q ss_pred             eec-CCCCCeEEEEECC
Q psy4393         148 TLP-AHSDPVSAVHFNR  163 (247)
Q Consensus       148 ~~~-~~~~~i~~~~~~~  163 (247)
                      .+. .....|.++.|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            531 2345677777764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.07  E-value=0.0016  Score=49.69  Aligned_cols=189  Identities=17%  Similarity=0.273  Sum_probs=108.3

Q ss_pred             EECCCCCEEEEEeC-----CCeEEEEecCCC-eEEEEEecccCCeEEEEECCCCCEEEEEcCC-----------------
Q psy4393          34 KFSPNGEWLASSSA-----DKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----------------   90 (247)
Q Consensus        34 ~~s~~~~~l~~~~~-----dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------   90 (247)
                      .|||||.+|++.-.     -|.|-|||...+ .....+..|..+-..+.|.+||+.++.+...                 
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            59999999986533     367899998643 3345677788888999999999998876430                 


Q ss_pred             -CeEEEEECCCceEEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCC-----EEEEECCCCeEEEeecCC-------C
Q psy4393          91 -KTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDES-----VRIWDVRTGKCLKTLPAH-------S  153 (247)
Q Consensus        91 -~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~~~-------~  153 (247)
                       ..+.+.|..+++.+.+..    .+.-.+..++..++|..++.+-..|.     .-+=-.+.++.+..+...       .
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence             123344444444332221    12334677777777766554322211     000011122222222211       2


Q ss_pred             CCeEEEEECCCCCEEEEe-cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         154 DPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       154 ~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..|-+++.+.+..+++.. -..+...+||..++..+..-...+...   +  .+...-++..+.+|++.++....
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaG---v--a~~~~gf~vssg~G~~~~~s~~~  349 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAG---V--AAAKGGFAVSSGQGRIIFYSRAA  349 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccc---c--eeccCceEEecCCceEEeccccc
Confidence            346677777655555544 455578899999998654432222222   2  23344477777789999885443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.05  E-value=0.0027  Score=48.36  Aligned_cols=169  Identities=11%  Similarity=0.120  Sum_probs=92.0

Q ss_pred             EEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCCceEEEEEecC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECC
Q psy4393          64 TISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                      .+.+-...+..++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+....+.+..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3444455699999999866 5566667788888886 46766665432 2446778888777777766668889999883


Q ss_pred             CCe------EEEeec-----CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC---ceeeeee-----c--cCCCCCeE
Q psy4393         142 TGK------CLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL-----I--DDDNPPVS  200 (247)
Q Consensus       142 ~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~-----~--~~~~~~v~  200 (247)
                      ...      ....+.     .+...+..++|+|.+..|+++-+..-..+|.+..   .......     .  ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111221     2344688999999877777776655555554432   1111100     1  11223467


Q ss_pred             EEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         201 FVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       201 ~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      .++++|.. .+++....+..|..+| ..++++-.+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            78898875 4555666777888888 444444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.04  E-value=0.0058  Score=51.78  Aligned_cols=184  Identities=13%  Similarity=0.184  Sum_probs=108.2

Q ss_pred             CCeEEEEecCCCeEEEEEecccCC--------------------e-EEEEECCCCCEEEEEcCCC---------------
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLG--------------------I-SDVAWSSDSRLLVSGSDDK---------------   91 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~~~~~d~---------------   91 (247)
                      +|.+.-+|..+++...........                    + ...+..+.+..++.++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            577888898888877765432110                    0 1233444566777776654               


Q ss_pred             ---eEEEEECCCceEEEEEecCCccEE--------E-EEEc-CCCC---EEEEeeCCCCEEEEECCCCeEEEeecCCCCC
Q psy4393          92 ---TLKIWELSSGKCLKTLKGHSNYVF--------C-CNFN-PQSN---LIVSGSFDESVRIWDVRTGKCLKTLPAHSDP  155 (247)
Q Consensus        92 ---~i~v~d~~~~~~~~~~~~~~~~v~--------~-~~~~-~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  155 (247)
                         .+.-+|.++++..-..+.......        . .... -++.   .++.++.+|.+..+|.++|+.+.......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               688899999988766542211110        0 0010 1232   57778889999999999999877654221  


Q ss_pred             eEEEEECCCCCEEEEe------------------cCCCeEEEEeCCCceeeeeeccCC-C------CCeEEEEECCCCCE
Q psy4393         156 VSAVHFNRDGSLIVSS------------------SYDGLCRIWDTASGQCLKTLIDDD-N------PPVSFVKFSPNGKY  210 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~-~------~~v~~~~~s~~~~~  210 (247)
                       ..+..+|  ..++.+                  ..+|.+...|+.+++.+=...... .      .+...-.....+..
T Consensus       332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~  408 (488)
T cd00216         332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL  408 (488)
T ss_pred             -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence             1123344  223222                  235778888888887542221110 0      11100001124578


Q ss_pred             EEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         211 ILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      |+.++.||.|+.+|.++++.+-..+.
T Consensus       409 v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         409 VFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEECCCCeEEEEECCCCceeeEEEC
Confidence            88899999999999999887666554

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0049  Score=50.48  Aligned_cols=200  Identities=16%  Similarity=0.239  Sum_probs=127.4

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ....+...+++..+.... ....+...+................-..++.++++..+ +....+..+.+.|..+......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            455677888886554433 22244444443111111111111234566788888754 4455568999999877666555


Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeC---CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeC
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDT  182 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~  182 (247)
                      ..-.. .-..+.++|+++.++.+..   ++.+.+.|..+.+.+........+ ..++++|+|..++++. .++.+.++|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            44332 3456889999987777655   678999999988887776665556 7899999999666654 6789999997


Q ss_pred             CCceeee-e---eccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCCcceE
Q psy4393         183 ASGQCLK-T---LIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKVVTPA  231 (247)
Q Consensus       183 ~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~  231 (247)
                      ......+ .   ....... -..+.++|+|..++.....   +.+...|.......
T Consensus       190 ~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             CCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            7665442 1   0111112 2458899999977665543   58888888775544

>KOG4649|consensus

Probab=98.03  E-value=0.0029  Score=47.66  Aligned_cols=102  Identities=11%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC  117 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  117 (247)
                      |++++.|+..|.+++.+..++...+.+.... ..+. ....+++..|..++.|+..+..|.++..++.+.+-..+.....
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            4567788999999999998886666554322 2222 3467789999999999999999999988887776555544555


Q ss_pred             EEcCCCCEEEEeeCCCCEEEEECC
Q psy4393         118 NFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                      +.+|....++.+...|.+---..+
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccC
Confidence            667733444444455555444433

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.03  E-value=0.00091  Score=57.52  Aligned_cols=147  Identities=14%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             CCeEEEEECCCCCEEEEEc------CCC--eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC---------
Q psy4393          70 LGISDVAWSSDSRLLVSGS------DDK--TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---------  132 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~------~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  132 (247)
                      ..+.+.+++|+|+.++...      .|.  .+.+++.. +.. ..+.... ......|+|+|..+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence            3577889999999887654      233  45555642 222 3332222 26677899998877766432         


Q ss_pred             ---CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE---EeCCCcee-e---eeeccCCCCCeEEE
Q psy4393         133 ---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI---WDTASGQC-L---KTLIDDDNPPVSFV  202 (247)
Q Consensus       133 ---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v---~d~~~~~~-~---~~~~~~~~~~v~~~  202 (247)
                         +.+.+.++..+....   ...+.|..+.|+|||..++... +|++.+   -....++. +   ..+.......+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               223333443332211   2245799999999999887765 577776   44344431 1   11111222334678


Q ss_pred             EECCCCCEEEEEEcCCeEEEEE
Q psy4393         203 KFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       203 ~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      .|..++.++ .+..++...+|.
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEE
Confidence            999999855 555555455554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.01  E-value=0.0024  Score=53.01  Aligned_cols=144  Identities=13%  Similarity=0.197  Sum_probs=79.0

Q ss_pred             cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE
Q psy4393          67 GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (247)
Q Consensus        67 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (247)
                      ........+.++|+|+.++++ .+|...+|......... ..    .-....|.+ .+.+|+-..++.|.++.--.....
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~G----~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-FG----SGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-EE----E-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-cC----ceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence            344557889999999998884 57777788854433322 21    122456877 455666666888998732222222


Q ss_pred             EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       147 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..++.. ..+..+-.   |.+|+..+. +.|.+||..+++.+..+..   .+|..+.|+++|++++..+.+ .+.|++.+
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             eEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            233322 23444433   777777654 4899999999988877632   247889999999999998854 66666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=97.93  E-value=9.3e-05  Score=62.34  Aligned_cols=108  Identities=15%  Similarity=0.257  Sum_probs=83.4

Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-----EEe
Q psy4393          76 AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-----LKT  148 (247)
Q Consensus        76 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~  148 (247)
                      +++..+++++.|+..|.+++|+-..+... .++.  ..+.+..+..+++..++|.|+..|.|.++-++.+.+     +..
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            45567889999999999999997665543 2332  445566778899999999999999999998875432     111


Q ss_pred             e-cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         149 L-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       149 ~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      . +.|...|++++|++++..+++|...|+|....+.+
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1 34677899999999999999999999998876665

>smart00320 WD40 WD40 repeats

Probab=97.93  E-value=6.6e-05  Score=38.48  Aligned_cols=36  Identities=56%  Similarity=0.872  Sum_probs=31.9

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG   55 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~   55 (247)
                      ...+..|...|.++.|.+.++.+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455567899999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.92  E-value=0.0054  Score=48.98  Aligned_cols=172  Identities=13%  Similarity=0.123  Sum_probs=95.5

Q ss_pred             eEEEEecCCCeEEEEEeccc-CCeE---EEEECCC----CCEEEEEcC----------CCeEEEEECCCc----eEEEEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHK-LGIS---DVAWSSD----SRLLVSGSD----------DKTLKIWELSSG----KCLKTL  107 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~-~~v~---~~~~~~~----~~~l~~~~~----------d~~i~v~d~~~~----~~~~~~  107 (247)
                      .|++.|..+.+....+.-.. ..+.   .+.+..+    ..+|+.|..          .|.+.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            56777776665544433211 1233   3344432    345665532          288999999874    122211


Q ss_pred             --ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEEeec-CCCCCeEEEEECCCCCEEEEecCCCeEEEE--e
Q psy4393         108 --KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--D  181 (247)
Q Consensus       108 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~--d  181 (247)
                        ....+.|.+++-- .+. ++.+ .+..|.+|++...+ ....-. .....+.++...  +.++++|.....+.++  +
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred             EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence              2235667776655 333 4433 34789999998776 333221 122356666554  5588888877777766  4


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ....+....-.......+.++.|-++++.++++..+|.+.++...
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            422222211112223346777777666799999999999999865

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008|consensus

Probab=97.88  E-value=3e-06  Score=70.30  Aligned_cols=162  Identities=22%  Similarity=0.349  Sum_probs=104.0

Q ss_pred             EEEecCCCCeEEEEECC-CCCEEEEEe----CCCeEEEEecCCC----eEEEEEec-ccCCeEEEEECCCCCEEEEEcCC
Q psy4393          21 FTLAGHTKAVSSVKFSP-NGEWLASSS----ADKLIKIWGAYDG----KFEKTISG-HKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~----~dg~v~iw~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ...++|.+..++++|++ |.+.||+|-    .|..+.|||+..+    +....+.+ ......+++|..+.+.+++|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            34557888999999998 566777763    3567999998754    12222332 34456688888888889999988


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEE-CCCCe-EEEeecC----CCCCeEEEEECC
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD-VRTGK-CLKTLPA----HSDPVSAVHFNR  163 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d-~~~~~-~~~~~~~----~~~~i~~~~~~~  163 (247)
                      ..++++|++..... ........+..+..+| .++++++- .||.+.+|| .+.-+ ++..+..    ....+..++|.|
T Consensus       176 r~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP  253 (783)
T KOG1008|consen  176 RSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP  253 (783)
T ss_pred             chhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence            89999998743211 1111223455566777 55666654 499999999 43322 2222211    123488899999


Q ss_pred             CCC-EEEEecCC-CeEEEEeCCC
Q psy4393         164 DGS-LIVSSSYD-GLCRIWDTAS  184 (247)
Q Consensus       164 ~~~-~l~~~~~d-g~i~v~d~~~  184 (247)
                      ... ++++...| +.|+.+|+..
T Consensus       254 trtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  254 TRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCcchhhhhccCcceEEEecccc
Confidence            644 45555544 6889998764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.84  E-value=0.011  Score=48.34  Aligned_cols=207  Identities=15%  Similarity=0.215  Sum_probs=115.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE-------------------------------------------EEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------------------------------------------EKTI   65 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~-------------------------------------------~~~~   65 (247)
                      .|+.+.|+++...|+.+...|.|.+|.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            578899999888889999999998875321100                                           0111


Q ss_pred             ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE--ec------CCccEEEEEEc-----CCC---CEEEEe
Q psy4393          66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL--KG------HSNYVFCCNFN-----PQS---NLIVSG  129 (247)
Q Consensus        66 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~------~~~~v~~~~~~-----~~~---~~l~~~  129 (247)
                      ....++|++++.+ +-.+++.|.++|.+.+.|++....+..-  ..      ....+.++.|.     .|+   -.++.|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2235678888886 4558999999999999999876655432  11      22346666664     232   467888


Q ss_pred             eCCCCEEEEECCC---CeE----EEeecCCCCCeEEEE-ECCC-C-------------------CEEEEecCCCeEEEEe
Q psy4393         130 SFDESVRIWDVRT---GKC----LKTLPAHSDPVSAVH-FNRD-G-------------------SLIVSSSYDGLCRIWD  181 (247)
Q Consensus       130 ~~d~~i~v~d~~~---~~~----~~~~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~~dg~i~v~d  181 (247)
                      ...|.+.+|.+.-   +.-    ......+.+++..+. ++.+ |                   ..+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999997741   111    111123445554443 3211 0                   1234444577899999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEE-----CCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ..+.+...... ........+.+     ...+..|++-..+|.|++|.+-..+++.....+
T Consensus       242 ~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  242 PPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             CCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            88776655544 22122223334     235667888889999999999888877766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.80  E-value=0.00013  Score=37.29  Aligned_cols=38  Identities=45%  Similarity=0.828  Sum_probs=32.6

Q ss_pred             eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      +....+..|...+.++.|++++..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556667788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395|consensus

Probab=97.77  E-value=0.0014  Score=53.99  Aligned_cols=144  Identities=25%  Similarity=0.356  Sum_probs=97.2

Q ss_pred             CCCCEEE-EEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCC-------EEEEeeCCCCEEEEECCCCeE--EEe
Q psy4393          79 SDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-------LIVSGSFDESVRIWDVRTGKC--LKT  148 (247)
Q Consensus        79 ~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~~--~~~  148 (247)
                      .+.++|+ .+..-..++-.|++.|+.+...+.+.. |.-+.+.|+..       .-+.|-.+..|.-||.|-...  +..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3445444 344445677789999999888887666 66667777542       234466778889999884322  222


Q ss_pred             ecCCC----CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         149 LPAHS----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       149 ~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      .+.|.    ....|.+-..+| ++++|+.+|.|++||- .+...++.+..-+.+|..+..+.||++|++.+ +..+.+-+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            22221    234555555555 6889999999999997 55555566666778899999999999988766 56777766


Q ss_pred             CC
Q psy4393         225 SK  226 (247)
Q Consensus       225 ~~  226 (247)
                      ..
T Consensus       499 t~  500 (644)
T KOG2395|consen  499 TL  500 (644)
T ss_pred             Ee
Confidence            53

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.0028  Score=55.76  Aligned_cols=132  Identities=19%  Similarity=0.250  Sum_probs=86.5

Q ss_pred             CCCeEEEEecCCCeEEEEEecccCC-eEEEEECCC-------CCEEEEEcCCCeEEEEECCCce--EEE-EEe--cCCcc
Q psy4393          47 ADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD-------SRLLVSGSDDKTLKIWELSSGK--CLK-TLK--GHSNY  113 (247)
Q Consensus        47 ~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~v~d~~~~~--~~~-~~~--~~~~~  113 (247)
                      ....|+-.|++.|+.+..+..+... |..+  .|+       ....+.|-.+..+..||.+-..  .+. ..+  .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4567888899999998888766543 5544  443       2234556667778889987532  221 011  12233


Q ss_pred             EEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      ..|++-+.+ ..||.|+.+|.||+||--..+....+++-..||..+..+.||+++++.+ +..+.+++.
T Consensus       580 Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            556655555 4689999999999999433222334556578999999999999988766 445556654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.73  E-value=0.015  Score=46.78  Aligned_cols=205  Identities=17%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             EEECCCCCEEEE-EeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          33 VKFSPNGEWLAS-SSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        33 ~~~s~~~~~l~~-~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      =+|.++|++|+. +..+|  .+...|+.+++..+...+.........++|+++.++-...+..+.-.|+++.+.......
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            367788976654 44455  566667778776665554323233455788888877665667888889998776555554


Q ss_pred             CCccEEEEEE--cCCCCEEEEeeC----------------------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393         110 HSNYVFCCNF--NPQSNLIVSGSF----------------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus       110 ~~~~v~~~~~--~~~~~~l~~~~~----------------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      ....+....|  +.++..++..-.                      ...|.-.|+.+|+....+. ....+.-+.++|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            4444433333  455666543211                      1135555777766543333 24456778899976


Q ss_pred             CEEEEecCCC-----eEEEE--eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-----CCeEEEEECCCcceEEE
Q psy4393         166 SLIVSSSYDG-----LCRIW--DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-----DNTLKLWDSKVVTPAII  233 (247)
Q Consensus       166 ~~l~~~~~dg-----~i~v~--d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~  233 (247)
                      ..+++=+.+|     .-+||  +.................+..=-|.|||..|..-+.     +..|.-+|.++......
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence            6555443333     12455  444333222211122223444568999987765332     33667777777665544


Q ss_pred             EccCC
Q psy4393         234 CSTPL  238 (247)
Q Consensus       234 ~~~~~  238 (247)
                      .+-|.
T Consensus       280 ~~~p~  284 (386)
T PF14583_consen  280 MEMPW  284 (386)
T ss_dssp             EEE-S
T ss_pred             EeCCc
Confidence            44443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.014  Score=46.12  Aligned_cols=182  Identities=13%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-----ccCCeEEEEECCCCCEEEEEcC-----------CCe
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSRLLVSGSD-----------DKT   92 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----------d~~   92 (247)
                      .+.++..-..+..|+++  +..+.+++.+++.....+..     .....++....|+|.+.++...           -|.
T Consensus        67 ~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~  144 (307)
T COG3386          67 GFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS  144 (307)
T ss_pred             CcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence            34444433334445444  23355666655544222221     1234567888999987776544           133


Q ss_pred             EEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCC--C----eE-EEeecCCCCCeEEEEECCC
Q psy4393          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRT--G----KC-LKTLPAHSDPVSAVHFNRD  164 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~----~~-~~~~~~~~~~i~~~~~~~~  164 (247)
                      ++.+|. .+...+.+..+-..-+.++|+|+++.++.... .+.|+-|++..  +    +. ...+....+..-.++...+
T Consensus       145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence            444443 45555555544445577999999987777654 47788887652  1    11 1122233445556788888


Q ss_pred             CCEEEEecCCC-eEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEE
Q psy4393         165 GSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAAT  215 (247)
Q Consensus       165 ~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  215 (247)
                      |.+.+++..+| .|..|+.. ++.+..+.... ..+++++|- |+.+.|+..+
T Consensus       224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEe
Confidence            88876555554 89999988 77666665443 344566664 5556665544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.70  E-value=0.021  Score=47.25  Aligned_cols=172  Identities=10%  Similarity=0.126  Sum_probs=84.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEE-----EECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDV-----AWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~-----~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      +.|.++.|+.+.++ +.-..||.+++||..... ...+.  .....|...     .+..+|  ++.-..++.+.+.+--.
T Consensus        81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence            78999999886554 455789999999986433 11111  111122222     233344  33333444444433222


Q ss_pred             ce-EEEEEecCCccEE----------EEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393         101 GK-CLKTLKGHSNYVF----------CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       101 ~~-~~~~~~~~~~~v~----------~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      .. ..+.+........          ...++.+....+....++.+.+.+-....   .+. ..+++..|++||+++++|
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~-~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---QID-SDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---ccc-CCCCeEEEEECCCCCEEE
Confidence            11 1111110000000          01233333444444444455534322211   111 246899999999999999


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                      .-..+|.+.+...+-.+....+..........+.|.-+
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            98889998888765444443332222222334455443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.67  E-value=0.022  Score=46.70  Aligned_cols=209  Identities=13%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--c------ccCCeEEEEECC-----CC--
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--G------HKLGISDVAWSS-----DS--   81 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~--   81 (247)
                      +....-+....++|++++.| |=-++|.|.++|.+.|.|++.......-.  .      ....++++.|..     |+  
T Consensus        76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            44444455568999999997 45578999999999999997776554422  1      123467777752     33  


Q ss_pred             -CEEEEEcCCCeEEEEECCC---ceE----EEEEecCCccEEEEE-EcCC-C-------------------CEEEEeeCC
Q psy4393          82 -RLLVSGSDDKTLKIWELSS---GKC----LKTLKGHSNYVFCCN-FNPQ-S-------------------NLIVSGSFD  132 (247)
Q Consensus        82 -~~l~~~~~d~~i~v~d~~~---~~~----~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d  132 (247)
                       -.+++|...|.+.+|.+.-   +..    ......+.+.+..+. ++.+ |                   .-++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             3578888999999997641   211    111223444444333 3211 1                   123444456


Q ss_pred             CCEEEEECCCCeEEEeecCCCCCeEEEEEC-----CCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC---CCeEEEEE
Q psy4393         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFN-----RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN---PPVSFVKF  204 (247)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~~v~~~~~  204 (247)
                      ..++++.+.+.+..............+.+-     ..+..|++-..+|.+++|.+-.-+.+........   ..+....+
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            789999988776544433221223333442     2456677778899999999988776655433211   11233567


Q ss_pred             CCCCCEEEEEEcC--CeEEEEECC
Q psy4393         205 SPNGKYILAATLD--NTLKLWDSK  226 (247)
Q Consensus       205 s~~~~~l~~~~~d--g~i~vwd~~  226 (247)
                      +++|+.++-.+..  ..+.+|...
T Consensus       315 s~~Gdi~~~~gpsE~~l~sv~~~~  338 (395)
T PF08596_consen  315 SRNGDIFYWTGPSEIQLFSVWGEG  338 (395)
T ss_dssp             -TTS-EEEE-SSSEEEEEEEES--
T ss_pred             CCCCCEEEEeCcccEEEEEEEccC
Confidence            8889877766543  245556443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.66  E-value=0.0058  Score=39.96  Aligned_cols=100  Identities=13%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             eEEEEECC---CC-CEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE
Q psy4393          72 ISDVAWSS---DS-RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (247)
Q Consensus        72 v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (247)
                      |+++++..   +| +.|++|+.|..|++|+-.  ..+..+... +.+..+.-... ..++.+..+|+|-+|+-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            45555543   33 468999999999999854  455566544 44556555554 679999999999999853  3345


Q ss_pred             eecCCCCCeEEEE-ECCCC---CEEEEecCCCeEE
Q psy4393         148 TLPAHSDPVSAVH-FNRDG---SLIVSSSYDGLCR  178 (247)
Q Consensus       148 ~~~~~~~~i~~~~-~~~~~---~~l~~~~~dg~i~  178 (247)
                      ..+.... +.+++ ++.++   .-|++|-.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5554444 44444 33333   2678888888764

>PHA02713 hypothetical protein; Provisional

Probab=97.66  E-value=0.0038  Score=53.71  Aligned_cols=144  Identities=9%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCCC-----eEEEEECCCceEEE--EEecCCccEEEEEEcCCCCEEEEeeCCC-------------------
Q psy4393          80 DSRLLVSGSDDK-----TLKIWELSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDE-------------------  133 (247)
Q Consensus        80 ~~~~l~~~~~d~-----~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------------  133 (247)
                      +|+..+.|+.++     .+..||..+.+...  .+.........+  .-++.+.+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence            566667777653     47889987754322  111111111112  22466777776542                   


Q ss_pred             ----CEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEecCCC------eEEEEeCCC-ceeeeeeccCC-CCCe
Q psy4393         134 ----SVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTAS-GQCLKTLIDDD-NPPV  199 (247)
Q Consensus       134 ----~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~v~d~~~-~~~~~~~~~~~-~~~v  199 (247)
                          .+..||..+.+-  +..+....... +++ .-++++.+.|+.++      .+..||..+ .+....-.... ....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence                366788776542  12221111111 122 22566677777542      467899887 44332111111 1111


Q ss_pred             EEEEECCCCCEEEEEEcCC--eEEEEECCCcc
Q psy4393         200 SFVKFSPNGKYILAATLDN--TLKLWDSKVVT  229 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~  229 (247)
                      ..+  .-+|+..++|+.+|  .+..||..+.+
T Consensus       507 ~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        507 HTI--LHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eeE--EECCEEEEEeeecceeehhhcCccccc
Confidence            222  23678888898888  78888887654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.64  E-value=0.021  Score=45.64  Aligned_cols=180  Identities=19%  Similarity=0.204  Sum_probs=101.1

Q ss_pred             CCEEEEEeC----------CCeEEEEecCCC-----eEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          39 GEWLASSSA----------DKLIKIWGAYDG-----KFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        39 ~~~l~~~~~----------dg~v~iw~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      .++++.|+.          .|.+.++++...     +.... -....++|.+++-. .+. ++++. ++.+.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            457776643          288999998773     22211 12346678887655 344 44443 4789999998776


Q ss_pred             -EEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-CeEEEeec--CCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         103 -CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       103 -~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                       ....-.. ....+.++...  +++++.|.....+.++..+. +..+..+.  .....++++.+-++++.++++..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             3332221 22244444443  66999999888888875443 22232222  224457788887666788999999999


Q ss_pred             EEEeCCC-------ce-eee-eeccCCCCCeEEE---EECC--CC------CEEEEEEcCCeEEEE
Q psy4393         178 RIWDTAS-------GQ-CLK-TLIDDDNPPVSFV---KFSP--NG------KYILAATLDNTLKLW  223 (247)
Q Consensus       178 ~v~d~~~-------~~-~~~-~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~vw  223 (247)
                      .++....       +. .+. ....+-+..++.+   .+.|  .+      ..++.++.+|.|-+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            8886542       11 111 1111223456655   4445  12      248888899988754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.64  E-value=0.017  Score=44.48  Aligned_cols=161  Identities=12%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC
Q psy4393          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (247)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (247)
                      +.+....+.++.|+|+.+.|++......-.++=...|+.++.+.-. -.....+.+-.++++.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4455566999999999999988877776666666678877765421 122345677777777777777888888877654


Q ss_pred             eEEEe-----ec----CC-CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce-ee-eeeccCC-------CCCeEEEEE
Q psy4393         144 KCLKT-----LP----AH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CL-KTLIDDD-------NPPVSFVKF  204 (247)
Q Consensus       144 ~~~~~-----~~----~~-~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~-~~~~~~~-------~~~v~~~~~  204 (247)
                      .....     ++    .+ ......++|+|....|..+-+..=+.+|...... .+ .......       -..+..+.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            32211     11    11 3456789999988888777766656666443221 00 0000000       123456777


Q ss_pred             CCC-CCEEEEEEcCCeEEEEEC
Q psy4393         205 SPN-GKYILAATLDNTLKLWDS  225 (247)
Q Consensus       205 s~~-~~~l~~~~~dg~i~vwd~  225 (247)
                      ++. +.+|+.+.+++.+.-.|.
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEec
Confidence            764 455566666777666664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.62  E-value=0.025  Score=46.15  Aligned_cols=197  Identities=15%  Similarity=0.263  Sum_probs=95.4

Q ss_pred             CCCEEEEEe-CCCeEEEEecCC----CeEEEEEec---c-c---CCeEEEEECCCCCEEEEEcC------CCeEEEEECC
Q psy4393          38 NGEWLASSS-ADKLIKIWGAYD----GKFEKTISG---H-K---LGISDVAWSSDSRLLVSGSD------DKTLKIWELS   99 (247)
Q Consensus        38 ~~~~l~~~~-~dg~v~iw~~~~----~~~~~~~~~---~-~---~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~   99 (247)
                      +.++|+..+ ..+.|.|.|..+    .+..+.+..   + .   ..-....--|+|+.++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 778999999862    334444442   1 1   12233444578888877532      2467788887


Q ss_pred             CceEEEEEecC---CccEEEEEEcCCCCEEEEeeC--------------------CCCEEEEECCCCeEEEeecCCCC--
Q psy4393         100 SGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSF--------------------DESVRIWDVRTGKCLKTLPAHSD--  154 (247)
Q Consensus       100 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~v~d~~~~~~~~~~~~~~~--  154 (247)
                      +.+........   ...-....|.|..+.+++...                    ..++++||+...+.++.+.....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            76655544332   223355677888888888654                    34699999999999998876543  


Q ss_pred             CeEEEEEC--CCCCE-EEEecCCCeEEEE-eCCCceeee----eecc----C----C--------CCCeEEEEECCCCCE
Q psy4393         155 PVSAVHFN--RDGSL-IVSSSYDGLCRIW-DTASGQCLK----TLID----D----D--------NPPVSFVKFSPNGKY  210 (247)
Q Consensus       155 ~i~~~~~~--~~~~~-l~~~~~dg~i~v~-d~~~~~~~~----~~~~----~----~--------~~~v~~~~~s~~~~~  210 (247)
                      ....+.|.  |+..+ ++.+...+.|..| ....++...    .+..    .    .        .+-++.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            23456664  44443 3333344455444 323333211    1100    0    0        234688999999999


Q ss_pred             EEEEE-cCCeEEEEECCCc-ceEEEE
Q psy4393         211 ILAAT-LDNTLKLWDSKVV-TPAIIC  234 (247)
Q Consensus       211 l~~~~-~dg~i~vwd~~~~-~~~~~~  234 (247)
                      |+.+. .+|.|+.||+.+. +|.++-
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~g  351 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVG  351 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEe
Confidence            99887 6899999999874 566653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.61  E-value=0.044  Score=48.79  Aligned_cols=195  Identities=16%  Similarity=0.201  Sum_probs=116.5

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccC--------CeEEEEEC----------------CCCCEEEEEcCCCeEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKL--------GISDVAWS----------------SDSRLLVSGSDDKTLK   94 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~d~~i~   94 (247)
                      +..|+.++.++.|.-.|..+++.+..+.....        .+..+++.                ..+.+++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55677778888998899988888777643211        01222221                1244788888899999


Q ss_pred             EEECCCceEEEEEecCCccEE-------------EEEEcC--CCCEEEEeeC----------CCCEEEEECCCCeEEEee
Q psy4393          95 IWELSSGKCLKTLKGHSNYVF-------------CCNFNP--QSNLIVSGSF----------DESVRIWDVRTGKCLKTL  149 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~  149 (247)
                      -.|.++|+....+... +.+.             ...-.|  .+..++.|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999877655321 1110             011112  1345555542          578999999999987665


Q ss_pred             cCC---------C---------CCeEEEEECCCCCEEEEec------------------CCCeEEEEeCCCceeeeeecc
Q psy4393         150 PAH---------S---------DPVSAVHFNRDGSLIVSSS------------------YDGLCRIWDTASGQCLKTLID  193 (247)
Q Consensus       150 ~~~---------~---------~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~~~  193 (247)
                      ...         .         ..-..+++++...+++.+.                  ..+.+.-.|+++++..=.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            321         0         0112345555554444322                  124566778888876533322


Q ss_pred             -CC-------CCCeEEEEECC-CCC---EEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         194 -DD-------NPPVSFVKFSP-NGK---YILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       194 -~~-------~~~v~~~~~s~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                       ++       ..+-..+.+.. +|+   .++.++.+|.+.++|.++++++...
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence             11       01112233333 563   7889999999999999999877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.023  Score=44.89  Aligned_cols=201  Identities=13%  Similarity=0.090  Sum_probs=113.7

Q ss_pred             EEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec-
Q psy4393          32 SVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-  109 (247)
Q Consensus        32 ~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-  109 (247)
                      +..|.++...|+-+ -..+.|.-|+..+++.. .+. ....+.++.....+..|+++..  -+.+++.+++.....+.. 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            34588877755443 45677888887655432 222 2333444444444555555533  345567665554222221 


Q ss_pred             ----CCccEEEEEEcCCCCEEEEeeC-----------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-
Q psy4393         110 ----HSNYVFCCNFNPQSNLIVSGSF-----------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  173 (247)
Q Consensus       110 ----~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  173 (247)
                          .....+.....|+|.+.++.-.           -|.++.+|. .+...+.+..+-..-+.++|+||++.|+.+.. 
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence                1123456677888887765433           133455554 34444444443344577999999987776644 


Q ss_pred             CCeEEEEeCCC--ce----eeeeeccCCCCCeEEEEECCCCCEEEEEEcCC-eEEEEECCCcceEEEEccCC
Q psy4393         174 DGLCRIWDTAS--GQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       174 dg~i~v~d~~~--~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~  238 (247)
                      .+.|.-|+...  +.    ............--.++.+.+|.+-+++..+| .|.+|+.+ +.++..+..|.
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            47888887652  11    11111112222234567778888776554444 99999988 77777777774

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.02  Score=43.94  Aligned_cols=202  Identities=14%  Similarity=0.201  Sum_probs=114.1

Q ss_pred             EEEECCCCC-EEEEEeCCCe-EEEEecCCCeEEEEEecccCC-e-EEEEECCCCCEEEEEcCC-----CeEEEEECCCc-
Q psy4393          32 SVKFSPNGE-WLASSSADKL-IKIWGAYDGKFEKTISGHKLG-I-SDVAWSSDSRLLVSGSDD-----KTLKIWELSSG-  101 (247)
Q Consensus        32 ~~~~s~~~~-~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~-  101 (247)
                      .++|+|.-. -++.+-.-|+ ..++|..+......+...+.. . ---.|+|||.+|.+.-.|     |.|-+||.+.+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            466777544 3444555554 345666555443333211111 0 012589999988776543     68999998743 


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeC------------------CCCEEEEECCCCeEEEee--c--CCCCCeEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------------------DESVRIWDVRTGKCLKTL--P--AHSDPVSAV  159 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~~~~~--~--~~~~~i~~~  159 (247)
                      +.+..+..+.-.-..+.|.+||..++.+..                  .-++.+.|..+|+.+...  .  .+...+..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            334455555544567789999998887643                  113555665666554432  2  234467888


Q ss_pred             EECCCCCEEEEecCCCeE-----EEEeCCCceeeeeeccCC------CCCeEEEEECCCCCEEEEEEcC-CeEEEEECCC
Q psy4393         160 HFNRDGSLIVSSSYDGLC-----RIWDTASGQCLKTLIDDD------NPPVSFVKFSPNGKYILAATLD-NTLKLWDSKV  227 (247)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i-----~v~d~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~  227 (247)
                      +..+||+.++.+-..|.-     .+=....++.++-+...+      ..-|-+++.+-+..+++..+.. +..-+||.++
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            888898877766544421     011111222222111111      0124567777777777777754 5788999998


Q ss_pred             cceEEE
Q psy4393         228 VTPAII  233 (247)
Q Consensus       228 ~~~~~~  233 (247)
                      +..+..
T Consensus       312 G~vv~~  317 (366)
T COG3490         312 GAVVSE  317 (366)
T ss_pred             CcEEec
Confidence            876544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.028  Score=45.61  Aligned_cols=186  Identities=21%  Similarity=0.278  Sum_probs=101.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-----------------cCCeEEEEECCCCCEEEEEcC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----------------KLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      ...+....|+|+|+.++.. .++.|.+++..++...+.....                 -..-..+-|+||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            4568889999999999876 4678999987766443322111                 112356789999999876532


Q ss_pred             CC------------------------------------eEEEEECCCceEEE-EE----ecCCccEEEEEEcCCCCEEEE
Q psy4393          90 DK------------------------------------TLKIWELSSGKCLK-TL----KGHSNYVFCCNFNPQSNLIVS  128 (247)
Q Consensus        90 d~------------------------------------~i~v~d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~  128 (247)
                      |-                                    .+.++|+.+++... ..    ......+..+.|.+++..++.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            21                                    13344554443211 11    123345677889888884443


Q ss_pred             ee--CCC---CEEEEECCCCeEEEeec-CCCCC---eEEEEEC-CCCC-EEEEecCCC--eEEEEeCCCceeeeeeccCC
Q psy4393         129 GS--FDE---SVRIWDVRTGKCLKTLP-AHSDP---VSAVHFN-RDGS-LIVSSSYDG--LCRIWDTASGQCLKTLIDDD  195 (247)
Q Consensus       129 ~~--~d~---~i~v~d~~~~~~~~~~~-~~~~~---i~~~~~~-~~~~-~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~  195 (247)
                      .-  .+.   .+.++|..++....... ...+.   -....+. +++. ++.....+|  +|.+++...+...  .+...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~--~lT~G  278 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR--QLTSG  278 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE--ESS-S
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee--ccccC
Confidence            32  222   36677877654322211 11121   1234444 5555 444445666  5666677766532  33344


Q ss_pred             CCCe-EEEEECCCCCEEEEEE
Q psy4393         196 NPPV-SFVKFSPNGKYILAAT  215 (247)
Q Consensus       196 ~~~v-~~~~~s~~~~~l~~~~  215 (247)
                      ...| ..+.++++++.|+..+
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a  299 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTA  299 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEE
T ss_pred             ceeecccceEcCCCCEEEEEe
Confidence            4556 3477899888776544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.55  E-value=0.0088  Score=39.13  Aligned_cols=92  Identities=14%  Similarity=0.240  Sum_probs=60.4

Q ss_pred             CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEE
Q psy4393         124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK  203 (247)
Q Consensus       124 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~  203 (247)
                      +.|+.|+.|..|++|+-  .+.+.++.. .+.+.+++-... ..++.+-.+|+|-+|+-..... +.  .....++....
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-Ri--KSK~~~~~~~~   88 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-RI--KSKNQVTSMAF   88 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee-ee--ccCCCeEEEEE
Confidence            67899999999999984  356666655 456777776665 5588888999999997643221 11  11222333344


Q ss_pred             ECCCC---CEEEEEEcCCeEEE
Q psy4393         204 FSPNG---KYILAATLDNTLKL  222 (247)
Q Consensus       204 ~s~~~---~~l~~~~~dg~i~v  222 (247)
                      ++.++   +.|++|=.+|.|.+
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEEe
Confidence            45443   36888888888754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.55  E-value=0.024  Score=44.10  Aligned_cols=141  Identities=20%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE-----------
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-----------  105 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----------  105 (247)
                      ..++.|+.|+.+| +.+++..+......+. +...|..+...|+-+.+++-+ |+.+.++++..-....           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            4577888898888 8888883322222222 233499999998877766664 4999999986533222           


Q ss_pred             ----EEecCCccEEEEE--EcCCCCEEEEeeCCCCEEEEECCCC-----eEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393         106 ----TLKGHSNYVFCCN--FNPQSNLIVSGSFDESVRIWDVRTG-----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       106 ----~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                          .+. ....+...+  -.+.+...+.....+.|.+|.....     ...+++.. ...+..+.|.  +..++.|..+
T Consensus        82 ~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC
Confidence                111 111232222  1233334444445558888877653     34455544 3567788887  4456666533


Q ss_pred             CeEEEEeCCCc
Q psy4393         175 GLCRIWDTASG  185 (247)
Q Consensus       175 g~i~v~d~~~~  185 (247)
                      + ..+.|+.++
T Consensus       158 ~-f~~idl~~~  167 (275)
T PF00780_consen  158 G-FYLIDLNTG  167 (275)
T ss_pred             c-eEEEecCCC
Confidence            3 555666543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.53  E-value=0.021  Score=44.91  Aligned_cols=150  Identities=13%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC-CCceEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL-SSGKCLK  105 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~~~~~  105 (247)
                      .+.+..+.-+++|++++++.......-|+.-.......-.....++..+.|.|++.+.+.+ ..|.++.=+. ...+...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            4668888889999999887665555677653322333333346679999999998876655 7888887762 2222211


Q ss_pred             E----EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec---CCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         106 T----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       106 ~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      .    ++...-.+..++|.+++...++|+. |.+ +.....|+.-+..+   .-......+.|.++.+-++. +.+|.+.
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll  299 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLL  299 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEE
Confidence            1    1112223788999998888776654 433 33334454433332   22344677888665555554 4677765


Q ss_pred             EE
Q psy4393         179 IW  180 (247)
Q Consensus       179 v~  180 (247)
                      -|
T Consensus       300 ~~  301 (302)
T PF14870_consen  300 RY  301 (302)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.52  E-value=0.029  Score=44.16  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC-
Q psy4393          63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-  141 (247)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-  141 (247)
                      .........+..+.-+++|.+++++.......-||.-...-...-+....++..+.|.|++.+.+.+ ..|.++.=+.. 
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            3344445668888889999988888766666677754333333334456789999999998887755 78888877722 


Q ss_pred             CCeEEEe----ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeecc--CCCCCeEEEEECCCCCEEEEEE
Q psy4393         142 TGKCLKT----LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       142 ~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ..+....    +......+..+++.+++...++|+. |.+ +...+.++.-+.-..  .-...+..+.|.++.+-++ -+
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG  293 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG  293 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence            2222111    1122334788999998888887764 433 344555554433322  2233466777766544444 44


Q ss_pred             cCCeEEEE
Q psy4393         216 LDNTLKLW  223 (247)
Q Consensus       216 ~dg~i~vw  223 (247)
                      .+|.|.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            57877655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.51  E-value=0.049  Score=46.63  Aligned_cols=191  Identities=14%  Similarity=0.091  Sum_probs=114.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEE----------EEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISD----------VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      +..|+.++.++.|.-.|..+++......... ..+..          ++.  .+..++.++.++.+.-+|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566677778888888998988877664321 11111          111  2356777888999999999999877654


Q ss_pred             ecCCcc-EEEEEEcC--CCCEEEEee------CCCCEEEEECCCCeEEEeecCCCC------------------------
Q psy4393         108 KGHSNY-VFCCNFNP--QSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHSD------------------------  154 (247)
Q Consensus       108 ~~~~~~-v~~~~~~~--~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~------------------------  154 (247)
                      ...... -..+.-.|  .+..++.+.      .+|.|..+|.++|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            321100 00111112  123444443      267899999999987765432110                        


Q ss_pred             --------CeEEEEECCCCCEEEEecCC-----C-----------eEEEEeCCCceeeeeeccCC--------CCCeEEE
Q psy4393         155 --------PVSAVHFNRDGSLIVSSSYD-----G-----------LCRIWDTASGQCLKTLIDDD--------NPPVSFV  202 (247)
Q Consensus       155 --------~i~~~~~~~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~--------~~~v~~~  202 (247)
                              .-..+.++|...+++.+..+     +           .|...|+++++..=.+...+        ..+-..+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                    11235677766666665522     2           56677888887654332211        0111223


Q ss_pred             EECCCCC---EEEEEEcCCeEEEEECCCcceE
Q psy4393         203 KFSPNGK---YILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       203 ~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      .+..+|+   .++.++.+|.+.+.|.++++++
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4445776   7788999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079|consensus

Probab=97.41  E-value=0.0012  Score=58.70  Aligned_cols=101  Identities=26%  Similarity=0.411  Sum_probs=74.3

Q ss_pred             CCCEEEEeeCCCCEEEEECCCCeE-EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC--CCC
Q psy4393         122 QSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPP  198 (247)
Q Consensus       122 ~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~  198 (247)
                      .+..++.|+..|.+-..|.+..-. ...-....++|++++|+.+|..++.|-.+|.|.+||...++..+.+....  ...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            456788899999999888875321 11112335789999999999999999999999999999988776654332  234


Q ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         199 VSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       199 v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +..+.+..++..++++...|.  +|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEE
Confidence            455666777777888887776  565

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.40  E-value=0.035  Score=42.44  Aligned_cols=184  Identities=10%  Similarity=0.092  Sum_probs=111.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEEecccCC-eEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      ..-...+.|..+|.++-+.+.-|  .|+.+|..+++......-...- -..++... ++...-.=.++...+||..+-+.
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceE
Confidence            34466788878888888777766  6888999988876554322111 11223332 33444455788999999998888


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC--C---CeEEEEECCCCCEEEEecCCCeEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS--D---PVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      +..+.-. ..=+.++  .++..++.......++.+|..+.+....+....  .   .++.+-+- +|...|=.-....|.
T Consensus       123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            7777543 3334555  445666666667789999998877666554322  1   24445554 676666666677788


Q ss_pred             EEeCCCceeeeeec--------c------CCCCCeEEEEECCCCCEEEEEE
Q psy4393         179 IWDTASGQCLKTLI--------D------DDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       179 v~d~~~~~~~~~~~--------~------~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ..|..+|+....+-        .      ......+.+|++|..+.|...+
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88998887655431        0      1124578899998877665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=97.39  E-value=0.031  Score=48.01  Aligned_cols=146  Identities=18%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCC-----CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEE-
Q psy4393          80 DSRLLVSGSDD-----KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLK-  147 (247)
Q Consensus        80 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~-  147 (247)
                      ++..++.|+.+     ..+..||..+.+....-.-...........-++.+.+.|+.+      ..+..||+.+.+-.. 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            56666777754     246778877654321110000111111122346677777632      357888987654211 


Q ss_pred             -eecCCCCCeEEEEECCCCCEEEEecCCC--------eEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC
Q psy4393         148 -TLPAHSDPVSAVHFNRDGSLIVSSSYDG--------LCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       148 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                       .+...... .++.. .++..++.|+.+.        .+.+||..+.+....-.... ......+.  .+++.++.|+.+
T Consensus       422 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence             11111111 12222 2456666666432        37889988765433211111 11111222  266777777654


Q ss_pred             -----CeEEEEECCCcc
Q psy4393         218 -----NTLKLWDSKVVT  229 (247)
Q Consensus       218 -----g~i~vwd~~~~~  229 (247)
                           +.+.+||.....
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence                 478889877653

>KOG2444|consensus

Probab=97.37  E-value=0.00035  Score=51.29  Aligned_cols=106  Identities=16%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             CCCEEEEeeCCCCEEEEECCCCeEE-EeecCCCCCeEEEE-ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393         122 QSNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       122 ~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                      .+..++.|+.+|.|++|........ .........+.++. ...++.+..+++.+|.|+.|++.-++.+.....+...++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            4567889999999999987622111 11112223343332 233456788899999999999987776554433332455


Q ss_pred             EEEEECCCCCEEEEE--EcCCeEEEEECCC
Q psy4393         200 SFVKFSPNGKYILAA--TLDNTLKLWDSKV  227 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~--~~dg~i~vwd~~~  227 (247)
                      ..+..+..+++++.+  +.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            566666777888887  8888888888643

>KOG2395|consensus

Probab=97.25  E-value=0.0091  Score=49.40  Aligned_cols=142  Identities=18%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             CCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-------EEEEcCCCeEEEEECCCceE--EEEE
Q psy4393          38 NGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-------LVSGSDDKTLKIWELSSGKC--LKTL  107 (247)
Q Consensus        38 ~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~d~~i~v~d~~~~~~--~~~~  107 (247)
                      +.++|+ .+.....++-.|++.|+.+....-+.. |.-+.+.|+.+.       -+.|-.+..|.-||++-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            334433 455556788889999988888776554 666667775431       13344566777788863221  1111


Q ss_pred             ecC----CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         108 KGH----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       108 ~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      +.+    .....|.+-. ...+++.|+.+|.|++||--..+....+++-..+|..+..+.+|+++++.+ +..+.+.|+
T Consensus       423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            111    1123333333 345789999999999999733333344666678999999999999887655 555656654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.065  Score=41.37  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=101.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      +-+..|.++.|+|+.+.|++......-.++-..+|.....+.-. -.....+.+.-++++.++--.++.+.++.+..+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44566999999999998888777766666655677777665321 11234567777888888877888888877665432


Q ss_pred             EEEEe---------cC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-E--EeecCCC-------CCeEEEEECC
Q psy4393         104 LKTLK---------GH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-L--KTLPAHS-------DPVSAVHFNR  163 (247)
Q Consensus       104 ~~~~~---------~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~--~~~~~~~-------~~i~~~~~~~  163 (247)
                      +..++         .+ ......++|+|....+..+-+-.-+.+|....+.. +  .....+.       ..++++.|++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            21111         11 23466799999988888887777777777653321 1  1111111       2356677876


Q ss_pred             C-CCEEEEecCCCeEEEEeCCC
Q psy4393         164 D-GSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       164 ~-~~~l~~~~~dg~i~v~d~~~  184 (247)
                      . +.+|+-+.+++.+.-.|...
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCC
Confidence            4 45666677777777777654

>KOG4499|consensus

Probab=97.16  E-value=0.054  Score=40.46  Aligned_cols=98  Identities=17%  Similarity=0.270  Sum_probs=66.3

Q ss_pred             EEEEECCCCCEE-EEEcCCCeEEEEE--CCCce-----EEEEEecC---Ccc-EEEEEEcCCCCEEEEeeCCCCEEEEEC
Q psy4393          73 SDVAWSSDSRLL-VSGSDDKTLKIWE--LSSGK-----CLKTLKGH---SNY-VFCCNFNPQSNLIVSGSFDESVRIWDV  140 (247)
Q Consensus        73 ~~~~~~~~~~~l-~~~~~d~~i~v~d--~~~~~-----~~~~~~~~---~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (247)
                      +.++|+.+.+.+ ++-+.+-.|.-||  ..+|.     .+..++..   ... --.++.+.+|++.++.-..++|..+|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            457898776655 4556677787787  45543     22222211   111 123455678899999888999999999


Q ss_pred             CCCeEEEeecCCCCCeEEEEECC-CCCEEEE
Q psy4393         141 RTGKCLKTLPAHSDPVSAVHFNR-DGSLIVS  170 (247)
Q Consensus       141 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  170 (247)
                      .+|+.+.+++.....+++.+|-- +-..+++
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            99999999988888899999953 3334443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.16  E-value=0.13  Score=44.09  Aligned_cols=189  Identities=15%  Similarity=0.212  Sum_probs=109.0

Q ss_pred             CCeEEEEecCCCeEEEEEecccC-------------------------------CeE-EEEECCCCCEEEEEcCC-----
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKL-------------------------------GIS-DVAWSSDSRLLVSGSDD-----   90 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~-------------------------------~v~-~~~~~~~~~~l~~~~~d-----   90 (247)
                      +|.|.-+|..+++.+..+..-..                               .+. .+++.|...++..+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            67888889988887765432110                               011 23555655666555422     


Q ss_pred             C-----------eEEEEECCCceEEEEEecCCccE---------EEEEEcCCCC---EEEEeeCCCCEEEEECCCCeEEE
Q psy4393          91 K-----------TLKIWELSSGKCLKTLKGHSNYV---------FCCNFNPQSN---LIVSGSFDESVRIWDVRTGKCLK  147 (247)
Q Consensus        91 ~-----------~i~v~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~  147 (247)
                      +           .|.-.|+++|+..-.++.....+         .-+....+++   .++.+.++|.++++|-++|+.+.
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            1           46667888998776665422111         1123334555   77889999999999999998752


Q ss_pred             eec--C----------CC-CC----------------------------eEEEEECCCCCEEEEecCC------------
Q psy4393         148 TLP--A----------HS-DP----------------------------VSAVHFNRDGSLIVSSSYD------------  174 (247)
Q Consensus       148 ~~~--~----------~~-~~----------------------------i~~~~~~~~~~~l~~~~~d------------  174 (247)
                      ..+  .          .. .+                            ...++++|+..+++....+            
T Consensus       340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~  419 (527)
T TIGR03075       340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY  419 (527)
T ss_pred             cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence            210  0          00 00                            0125566665555443322            


Q ss_pred             ---------------------CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         175 ---------------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       175 ---------------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                                           |.+.-+|+.+++..=...... ...... +.-.+..++.++.+|.++.+|.++++++-.
T Consensus       420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~-p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~  497 (527)
T TIGR03075       420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF-PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWK  497 (527)
T ss_pred             CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC-CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence                                 457777777776443222111 101111 112445677788899999999999998887


Q ss_pred             EccCC
Q psy4393         234 CSTPL  238 (247)
Q Consensus       234 ~~~~~  238 (247)
                      ++.+.
T Consensus       498 ~~~g~  502 (527)
T TIGR03075       498 FKTGS  502 (527)
T ss_pred             EeCCC
Confidence            76654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.14  E-value=0.09  Score=41.76  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=106.2

Q ss_pred             CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC----------CCeEEEEECCCceEEEEEecCCc-c----
Q psy4393          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----------DKTLKIWELSSGKCLKTLKGHSN-Y----  113 (247)
Q Consensus        49 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~~-~----  113 (247)
                      +.+.++|..+++.+..+.....+  .+..+|+++.+++++.          .-.|.+||.++-.....+.-... +    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47899999898888877654333  3567999999887642          33699999998776654432221 1    


Q ss_pred             --EEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC-Cceee
Q psy4393         114 --VFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCL  188 (247)
Q Consensus       114 --v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~  188 (247)
                        .....++.++++++.-..  ...|.|.|+..++.+.++... ++. .+--+++ .-+.+-+.||.+.-..+. .|+..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-GC~-~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-GCW-LIYPSGN-RGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-SEE-EEEEEET-TEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-CEE-EEEecCC-CceEEEecCCceEEEEECCCCCEe
Confidence              122456777777666433  345778888887777766542 222 2211222 346667779988877776 34432


Q ss_pred             ee---eccCCC-CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         189 KT---LIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       189 ~~---~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .+   ++.... ..+..-++...+..++..+.+|.|+--|.....+
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA  217 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc
Confidence            21   222222 2233344555666777788899999988776554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.12  E-value=0.0027  Score=34.75  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      ...|.+++|+|...++|.++.+|.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456899999999999999999999999988

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.09  E-value=0.084  Score=40.66  Aligned_cols=145  Identities=12%  Similarity=0.135  Sum_probs=87.3

Q ss_pred             CeEEEEECCCCCEEEEEc---CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEE-CCCCeEE
Q psy4393          71 GISDVAWSSDSRLLVSGS---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VRTGKCL  146 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d-~~~~~~~  146 (247)
                      .+.+.+++++++.++...   ....+.++.....  ...+. ....+....|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578899999999887665   3335555554322  22221 222566778999988888777677667663 3333221


Q ss_pred             -EeecCC--CCCeEEEEECCCCCEEEEec---CCCeEEEEeCC---Cc--eee---eeeccCCCCCeEEEEECCCCCEEE
Q psy4393         147 -KTLPAH--SDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTA---SG--QCL---KTLIDDDNPPVSFVKFSPNGKYIL  212 (247)
Q Consensus       147 -~~~~~~--~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~---~~--~~~---~~~~~~~~~~v~~~~~s~~~~~l~  212 (247)
                       ......  ...|..+.++|||..++...   .++.+.+--+.   .+  ..+   ..........+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             112211  12799999999999877655   34666655332   22  111   111112235678899999999888


Q ss_pred             EEEcCC
Q psy4393         213 AATLDN  218 (247)
Q Consensus       213 ~~~~dg  218 (247)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.06  E-value=0.065  Score=45.28  Aligned_cols=149  Identities=15%  Similarity=0.285  Sum_probs=86.1

Q ss_pred             CCeEEEEECCCCCEEE-EEe--CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC----CEEEEEcCCCeEEEEECCC
Q psy4393          28 KAVSSVKFSPNGEWLA-SSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS----RLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~-~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~  100 (247)
                      .+|..++|. ||+.++ +.-  .+|.+++=|.       .+-+.-..|..+.|.|-+    -.+++.-....|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478899996 666544 321  2333332221       122333458899999842    2566666778899998752


Q ss_pred             -----ceEEE----EEecCC-ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEE
Q psy4393         101 -----GKCLK----TLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       101 -----~~~~~----~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                           ++.+.    .+...- ---..+.|+|....++.-.....-.+++.+... .++.--...+.|.|.+|.+||..|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 22211    111110 012357799988877766555444455554332 2222223467899999999999876


Q ss_pred             Eec-CCCeEEEEeCCC
Q psy4393         170 SSS-YDGLCRIWDTAS  184 (247)
Q Consensus       170 ~~~-~dg~i~v~d~~~  184 (247)
                      ++- ..=+.++||-..
T Consensus       172 VAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEeCCeEEEEEecCch
Confidence            653 334667888654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.04  E-value=0.0031  Score=34.54  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGA   56 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~   56 (247)
                      ...|..++|+|...+||.+..+|.|.+++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456999999999999999999999999988

>KOG2280|consensus

Probab=97.01  E-value=0.088  Score=45.70  Aligned_cols=200  Identities=17%  Similarity=0.235  Sum_probs=100.2

Q ss_pred             CCeEEEEECCCCCE-EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          28 KAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        28 ~~v~~~~~s~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ++..++..+|.... ++  +.--.|+|++. .|.....+......+-.+.|+.+.. |++...+|.+++|++-... ...
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~-ie~  118 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF-IES  118 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhh-hcc
Confidence            33445555553221 11  23345777776 3444444433444788899998766 5566789999999985322 211


Q ss_pred             --E--ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-C--CeEEEE-ECCC--CCEEEEec-CCC
Q psy4393         107 --L--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-D--PVSAVH-FNRD--GSLIVSSS-YDG  175 (247)
Q Consensus       107 --~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~--~i~~~~-~~~~--~~~l~~~~-~dg  175 (247)
                        +  ......|..+.+..+|-.+.+  .+|.+.+..-.....+..++.-+ .  +-+|-. +.|.  ...++-.. ..+
T Consensus       119 ~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~  196 (829)
T KOG2280|consen  119 NSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG  196 (829)
T ss_pred             cccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh
Confidence              1  223344666666666544443  34544443322211122222111 0  111111 1121  11111111 011


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                       ..++..................+..+..||+.++|+.-+.+|.|.+-+.+..+.+..++
T Consensus       197 -~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  197 -LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             -hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence             11111121111111122223567789999999999999999999999887776666555

>KOG4441|consensus

Probab=97.00  E-value=0.083  Score=45.71  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             CCCEEEEEeCCC------eEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCC-C-----eEEEEECCCceEE
Q psy4393          38 NGEWLASSSADK------LIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDD-K-----TLKIWELSSGKCL  104 (247)
Q Consensus        38 ~~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~-----~i~v~d~~~~~~~  104 (247)
                      .+.+++.|+.++      .+..||..++.......- ....-.+++.. ++...++|+.+ |     .+..||..+.+..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            345566666653      577788766543322111 11112233333 45677888888 3     5778888776532


Q ss_pred             E--EEecCCccEEEEEEcCCCCEEEEeeCCCC-----EEEEECCCCeEEEeecCCCCCeEEEE-ECCCCCEEEEecCCC-
Q psy4393         105 K--TLKGHSNYVFCCNFNPQSNLIVSGSFDES-----VRIWDVRTGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDG-  175 (247)
Q Consensus       105 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg-  175 (247)
                      .  .+.........  -.-+|.+.+.|+.||.     +-.||..+.+-- ............. -.-+|.+.++|+.++ 
T Consensus       363 ~~a~M~~~R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCCccCcccccee--EEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence            2  11111111111  1225778888888874     667777654311 1111111111111 123677788888664 


Q ss_pred             -----eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCcceE
Q psy4393         176 -----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVVTPA  231 (247)
Q Consensus       176 -----~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~  231 (247)
                           .+..||..+++....-.......-..++ .-++...+.|+.|+     .|..||..+.+-.
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence                 5778888877643321111111111122 23566777777665     3788888765543

>KOG4441|consensus

Probab=97.00  E-value=0.071  Score=46.10  Aligned_cols=182  Identities=16%  Similarity=0.227  Sum_probs=92.2

Q ss_pred             CCEEEEEeCC-C-----eEEEEecCCCeEEEE--EecccCCeEEEEECCCCCEEEEEcCCC-----eEEEEECCCceEEE
Q psy4393          39 GEWLASSSAD-K-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCLK  105 (247)
Q Consensus        39 ~~~l~~~~~d-g-----~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~  105 (247)
                      +...++|+.| |     .+..||....+....  +........ ++ .-+|...++|+.||     .+..||..+.+...
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            4566778877 3     466777766553321  111111111 11 12577788888886     46778877654221


Q ss_pred             --EEecCCccEEEEEEcCCCCEEEEeeCCC------CEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         106 --TLKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       106 --~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                        .+.........  ..-++.+.+.|+.++      .+..||..+++-  +..+........ ++. -++.+++.|+.++
T Consensus       411 va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  411 VAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDG  486 (571)
T ss_pred             cCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccC
Confidence              11111111111  123467777887554      467788776542  222222122222 222 2567788888776


Q ss_pred             -----eEEEEeCCCceeeeeeccC-CCCCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCc
Q psy4393         176 -----LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVV  228 (247)
Q Consensus       176 -----~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~  228 (247)
                           .+..||..+.+....-... ....+...  .-+++..+.|+.||     +|..||..+.
T Consensus       487 ~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  487 TSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             CCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence                 3778888877654332111 11111112  22456667777665     5777776543

>KOG2079|consensus

Probab=96.96  E-value=0.0017  Score=57.65  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccc
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN  241 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  241 (247)
                      .+..++.|+..|++-..|....-.....-.....+|++++|+.+|+.++.|-.+|.|.+||...+.++..+.....|+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            456788899999999988876421112223446789999999999999999999999999999887776655544443

>PHA02790 Kelch-like protein; Provisional

Probab=96.90  E-value=0.18  Score=42.83  Aligned_cols=180  Identities=9%  Similarity=0.005  Sum_probs=82.4

Q ss_pred             CCEEEEEeCCC-----eEEEEecCCCeEEEE--EecccCCeEEEEECCCCCEEEEEcCC--CeEEEEECCCceEEEEEec
Q psy4393          39 GEWLASSSADK-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDD--KTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        39 ~~~l~~~~~dg-----~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~  109 (247)
                      +..+++|+.++     .+..||..+......  +..........  .-++...+.|+.+  ..+..||..+.+... +..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~  348 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS  348 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence            44556666543     466677665543221  11111111112  2356666777653  357778876554321 111


Q ss_pred             CC-ccEEEEEEcCCCCEEEEeeCCC---CEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         110 HS-NYVFCCNFNPQSNLIVSGSFDE---SVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       110 ~~-~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      -. .........-++.+.+.|+.++   .+..||.++.+-..  .+....... +++ .-++.+.+.|+   .+.+||..
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCC
Confidence            11 1111112223567777777553   46678877654211  111111111 121 23456556553   46789988


Q ss_pred             CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCC
Q psy4393         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKV  227 (247)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~  227 (247)
                      +.+....-... ......-+..-+++..+.|+.+     ..+..||...
T Consensus       424 ~~~W~~~~~m~-~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        424 SNTWTLIDDPI-YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCcEeEcCCCC-CCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            76543221111 1111111122356777777654     3566777654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.88  E-value=0.17  Score=40.93  Aligned_cols=161  Identities=18%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             ecCCCeEEEEEecccCCeEE-----EEECCCCCEEEEEcC-C--CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          55 GAYDGKFEKTISGHKLGISD-----VAWSSDSRLLVSGSD-D--KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        55 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      |..+|..+..+.........     =+|.++|+.|+-++. +  ..+.+.|+.+++..+...+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            45566666666543332222     357788977665554 4  467788999887654333222222245677888888


Q ss_pred             EEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEE--CCCCCEEEEec---CC-------------------CeEEEEeC
Q psy4393         127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSS---YD-------------------GLCRIWDT  182 (247)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~---~d-------------------g~i~v~d~  182 (247)
                      +....+..|.-.|+++.+................|  +.++..++-.-   .+                   ..|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            77766778999999988764444444444433344  44566543321   11                   13455577


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                      .+++....+.  ...-+..+.|+|....++.-+.+
T Consensus       176 ~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHE  208 (386)
T PF14583_consen  176 KTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHE  208 (386)
T ss_dssp             TT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-
T ss_pred             CCCceeEEEe--cCccccCcccCCCCCCEEEEecc
Confidence            7776443332  23346678899876666554433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.85  E-value=0.092  Score=44.43  Aligned_cols=152  Identities=13%  Similarity=0.221  Sum_probs=84.7

Q ss_pred             CCeEEEEECCCCCEEEEEc--CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCC----CEEEEeeCCCCEEEEECCCC
Q psy4393          70 LGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVRTG  143 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~  143 (247)
                      .++..++|....+.+++.-  .+|.+++=|.   ..    -+.-..|..+.|.|-+    ..+.+.-...+|.+|.+...
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4688899974333344432  2333332221   12    2333458889998842    23444456678999988521


Q ss_pred             -----eEEE----eecCCCCCe--EEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEE
Q psy4393         144 -----KCLK----TLPAHSDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL  212 (247)
Q Consensus       144 -----~~~~----~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  212 (247)
                           +.+.    ++.. .-++  ....|+|....|++=+....-.+++++........-....+.|.|.+|.+||+.|+
T Consensus        93 ~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             ccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 1111    1110 1111  23469999888876555544445555432211111124456799999999999887


Q ss_pred             EEE-cCCeEEEEECCCcc
Q psy4393         213 AAT-LDNTLKLWDSKVVT  229 (247)
Q Consensus       213 ~~~-~dg~i~vwd~~~~~  229 (247)
                      .+- ..=.-++||..+++
T Consensus       172 VAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             EEeCCeEEEEEecCchhh
Confidence            664 33467899976553

>KOG2444|consensus

Probab=96.84  E-value=0.0064  Score=44.87  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEEEE-EecCCccEEE-EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCe
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCLKT-LKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPV  156 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i  156 (247)
                      -+..+++|+.+|.|.+|+......... .......+.+ +.-..++.+..+++.+|.++.|++...+.+-....|. .+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            346788999999999998763211111 1111122222 2233455688889999999999998877666655555 444


Q ss_pred             EEEEECCCCCEEEEe--cCCCeEEEEeCCC
Q psy4393         157 SAVHFNRDGSLIVSS--SYDGLCRIWDTAS  184 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~--~~dg~i~v~d~~~  184 (247)
                      ........+++++.+  +.+..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            545555555666655  6666666776653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.82  E-value=0.047  Score=44.87  Aligned_cols=94  Identities=14%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-eEEEEECCC-C------------
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD-S------------   81 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~-~------------   81 (247)
                      +....+.+.+....+.++..+|++++.|+...-|.|.++|...+.....+++.... +.-+..... .            
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence            34566778888889999999999998888877899999999888777777665433 211111111 1            


Q ss_pred             ----C-EEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          82 ----R-LLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        82 ----~-~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                          . +++-+..-|.|.+|.++++..+..+..
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence                1 234566788999999998887766543

>PHA02713 hypothetical protein; Provisional

Probab=96.80  E-value=0.029  Score=48.36  Aligned_cols=95  Identities=6%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC------CEEEEECCC-Ce--EEEeecCCCCCeEEEEEC
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVRT-GK--CLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~-~~--~~~~~~~~~~~i~~~~~~  162 (247)
                      .+..||..+.+....-.-...........-++.+.+.|+.++      .+..||..+ .+  .+..+.........+.+ 
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-  511 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-  511 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-
Confidence            466788776543211110011111111223456667776542      356788876 33  23333322222222233 


Q ss_pred             CCCCEEEEecCCC--eEEEEeCCCceee
Q psy4393         163 RDGSLIVSSSYDG--LCRIWDTASGQCL  188 (247)
Q Consensus       163 ~~~~~l~~~~~dg--~i~v~d~~~~~~~  188 (247)
                       ++++.++|+.+|  .+..||..+.+..
T Consensus       512 -~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        512 -DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             -CCEEEEEeeecceeehhhcCccccccc
Confidence             678888999888  6777887776543

>PRK10115 protease 2; Provisional

Probab=96.73  E-value=0.39  Score=42.70  Aligned_cols=193  Identities=10%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             CeEEEEECCCCCEEEEEeC-C----CeEEEEecCCCeEEE-EEecccCCeEEEEECCCCCEEEEEcCC------CeEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSA-D----KLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSRLLVSGSDD------KTLKIW   96 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~-d----g~v~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~   96 (247)
                      .+..+.++|||++|+.+.. +    ..+++.|+.++.... .+...  . ..++|.+|++.|+....+      ..+..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            4677889999998876432 2    357788887665321 12211  1 458999998877655332      367788


Q ss_pred             ECCCc--eEEEEEecCCccEE-EEEEcCCCCEEEEeeC---CCCEEEEECC--CCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          97 ELSSG--KCLKTLKGHSNYVF-CCNFNPQSNLIVSGSF---DESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        97 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      ++.++  +....+........ ....+.++..++..+.   ++.+.+++..  .+.....+....+....+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88877  33333443333232 2333446776554433   3568888843  3332222222222222222 2233333


Q ss_pred             EEecCC---CeEEEEeCCCceeeeeeccC-CCCCeEEEEECCCCCEEEEEEcCCe--EEEEECC
Q psy4393         169 VSSSYD---GLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNT--LKLWDSK  226 (247)
Q Consensus       169 ~~~~~d---g~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~--i~vwd~~  226 (247)
                      +....+   ..+...++........+... ....+..+.+.. +.++++...+|.  +.++|..
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~  346 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRK  346 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCC
Confidence            333222   23444455421122333333 234566677762 234444555664  4555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.71  E-value=0.19  Score=39.02  Aligned_cols=148  Identities=20%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             CCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee---------
Q psy4393          79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---------  149 (247)
Q Consensus        79 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---------  149 (247)
                      ..++.|+.|+.+| +.+++.........+. +...|..+...|+-+.++.-+ |+.++++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998888 8889983332222222 223388888888777766654 599999998754332210         


Q ss_pred             -----cCCCCCeEEEE--ECCCCCEEEEecCCCeEEEEeCCCc-----eeeeeeccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         150 -----PAHSDPVSAVH--FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       150 -----~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                           ......+...+  -...+...++......+.+|.....     +..+.+...  ..+..++|.  ++.++.|.. 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~-  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTS-  156 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeC-
Confidence                 01112333333  1123333333444557887765542     233443333  345677887  456777764 


Q ss_pred             CeEEEEECCCcceEEEE
Q psy4393         218 NTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       218 g~i~vwd~~~~~~~~~~  234 (247)
                      +...+.|..+..+.-+.
T Consensus       157 ~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELL  173 (275)
T ss_pred             CceEEEecCCCCceEEe
Confidence            45778888766554443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.70  E-value=0.18  Score=38.66  Aligned_cols=205  Identities=15%  Similarity=0.152  Sum_probs=125.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE-E
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-T  106 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~  106 (247)
                      ..-..++-+|||..-+++...|.+--.|..+++....--+....-..+..-|||..-++-+.. .|.-.|.++.+..+ .
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            344567778888877777777777777777777766555555566778889999877765544 55556776654322 1


Q ss_pred             --EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-CCCeEEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         107 --LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       107 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                        .+..........|++.|++.+++... .---.|...+ .++.+... ...-..|+..|+|...++.-.+..|-..|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccc-cceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence              12223446677899999999887532 1111121111 22333222 2234668899999988887777777777877


Q ss_pred             CceeeeeeccCC--CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         184 SGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       184 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .+... .+....  ...-..+--+|.|+.-++....+.+..||..+.. -.++..|
T Consensus       219 ~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLP  272 (353)
T COG4257         219 AGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLP  272 (353)
T ss_pred             cCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCC
Confidence            66322 121111  2223445567888877777777888888877654 3344444

>KOG3630|consensus

Probab=96.61  E-value=0.052  Score=49.20  Aligned_cols=142  Identities=14%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCeEEEEECCCCCEEEE--EcCCCeEEEEECCCceE-----EEEEe------cCCccEEEEEEcCCCCE-EEEeeCCCCE
Q psy4393          70 LGISDVAWSSDSRLLVS--GSDDKTLKIWELSSGKC-----LKTLK------GHSNYVFCCNFNPQSNL-IVSGSFDESV  135 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~-----~~~~~------~~~~~v~~~~~~~~~~~-l~~~~~d~~i  135 (247)
                      .++..+...+|+...++  .+.+-.|..||+++-..     ...+.      .......++.|+|.-.. .+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34556666777655433  33344788899875321     11111      12233557788885432 3455678888


Q ss_pred             EEEECCCCeE-EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee---ccCCCCCeEEEEECCCCCEE
Q psy4393         136 RIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       136 ~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l  211 (247)
                      ++.-+..... ...+ ......++++|+|.|+.++.|-..|.+.-|-..- +....+   ...+...|.++.|-....+|
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEE
Confidence            8776543221 1122 2245679999999999999999999988875432 222222   12224568888887777776


Q ss_pred             EE
Q psy4393         212 LA  213 (247)
Q Consensus       212 ~~  213 (247)
                      +.
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            65

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.58  E-value=0.31  Score=39.78  Aligned_cols=142  Identities=12%  Similarity=0.144  Sum_probs=76.4

Q ss_pred             CCeEEEEECCCCCEEEEEe-----------CCC-eEEEEecCC--CeE--EEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          28 KAVSSVKFSPNGEWLASSS-----------ADK-LIKIWGAYD--GKF--EKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~-----------~dg-~v~iw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      .....++|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.+++ .++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567889999999877642           223 676665432  332  22333333345788898888 444 44444


Q ss_pred             eEEEEECCCc-----eEE---EEEecC----CccEEEEEEcCCCCEEEEeeCC-------------------CCEEEEEC
Q psy4393          92 TLKIWELSSG-----KCL---KTLKGH----SNYVFCCNFNPQSNLIVSGSFD-------------------ESVRIWDV  140 (247)
Q Consensus        92 ~i~v~d~~~~-----~~~---~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~v~d~  140 (247)
                      ..++.|....     +..   ..+...    ......+.|.|+|.+.++-+..                   +.+.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344454321     111   112111    2235678899999876654421                   33444555


Q ss_pred             CCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393         141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       141 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ..++. ..+...-.....++|+|+|+++++-.
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            44332 22222222245789999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.58  E-value=0.23  Score=38.23  Aligned_cols=144  Identities=17%  Similarity=0.221  Sum_probs=86.2

Q ss_pred             CeEEEEECCCCCEEEEEe---CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE-CCCceEE
Q psy4393          29 AVSSVKFSPNGEWLASSS---ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE-LSSGKCL  104 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d-~~~~~~~  104 (247)
                      .+.+.+++++++.++...   ....+.++..  +....... ....+....|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999887654   2234444433  22222221 223677889999988777666666666663 2333221


Q ss_pred             -EEEecC--CccEEEEEEcCCCCEEEEee---CCCCEEEEECC---CC--e----EEEeecCCCCCeEEEEECCCCCEEE
Q psy4393         105 -KTLKGH--SNYVFCCNFNPQSNLIVSGS---FDESVRIWDVR---TG--K----CLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       105 -~~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~---~~--~----~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                       ..+...  ...|..+.++|||..++...   .++.|.+--+.   .+  .    ...........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             112211  12799999999999887765   34566655432   22  1    1111222245788999999998777


Q ss_pred             EecCCC
Q psy4393         170 SSSYDG  175 (247)
Q Consensus       170 ~~~~dg  175 (247)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.57  E-value=0.32  Score=39.74  Aligned_cols=140  Identities=13%  Similarity=0.126  Sum_probs=75.5

Q ss_pred             CeEEEEECCCCCEEEEEc-----------CCC-eEEEEECCC--ce--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCC
Q psy4393          71 GISDVAWSSDSRLLVSGS-----------DDK-TLKIWELSS--GK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  134 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~v~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (247)
                      ....++|.++|+++++..           ..+ .|.+++-.+  ++  ....+.........+.+.+++ ++++ ... .
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence            356788999998777653           223 676665433  22  223333333345678888888 4443 333 3


Q ss_pred             EEEE-ECCCC-----e--EE-EeecCC----CCCeEEEEECCCCCEEEEecCC-------------------CeEEEEeC
Q psy4393         135 VRIW-DVRTG-----K--CL-KTLPAH----SDPVSAVHFNRDGSLIVSSSYD-------------------GLCRIWDT  182 (247)
Q Consensus       135 i~v~-d~~~~-----~--~~-~~~~~~----~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~v~d~  182 (247)
                      |..+ |....     +  .+ ..+...    ......+++.|||.+.++-+..                   |.+.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4434 44211     1  11 122221    2346778999999876654421                   34555555


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      .+++. ..+... ......++|+|+|+++++-.
T Consensus       172 dg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence            54432 222222 22235689999998876544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.46  E-value=0.35  Score=38.94  Aligned_cols=149  Identities=11%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEE-EecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~i-w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      +.+.++.+.|++.+++++ ..|.+.. ++................+.++.+.++++.++++ ..|.+.+=....+.....
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            457888899988776654 4554432 2211112222333345568899999998876665 567664323344433222


Q ss_pred             Eec----CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec---CCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         107 LKG----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       107 ~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ...    ....+..+.+.+++..++.+ .+|.+. .....++......   .-......+.+..+++.+++ +..|.|..
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~  327 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLR  327 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEE
Confidence            211    12236677888877766654 456543 3333344333322   11234666777666666554 45777766


Q ss_pred             Ee
Q psy4393         180 WD  181 (247)
Q Consensus       180 ~d  181 (247)
                      ++
T Consensus       328 ~~  329 (334)
T PRK13684        328 YV  329 (334)
T ss_pred             ec
Confidence            65

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.39  E-value=0.25  Score=41.26  Aligned_cols=142  Identities=15%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             CCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC--------CCEEEEEcCCCeEEEEECCC-ceEEEE
Q psy4393          37 PNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--------SRLLVSGSDDKTLKIWELSS-GKCLKT  106 (247)
Q Consensus        37 ~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~d~~i~v~d~~~-~~~~~~  106 (247)
                      .+..+|+ .++....++-.|++.|+.+.....+..-  -+.+.|+        .+.|+-.+..+..+ .|.+- |..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceee
Confidence            3444444 3555667777888888888877766544  3556664        23455555444443 45442 222211


Q ss_pred             EecCCccEEEEEE----cCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         107 LKGHSNYVFCCNF----NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       107 ~~~~~~~v~~~~~----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      . .....+..-.|    .....++|.++..|-|++||--.-+....+++-...|..+..+.+|+++++.+ ...+.+.|+
T Consensus       554 ~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~  631 (776)
T COG5167         554 V-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV  631 (776)
T ss_pred             e-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence            1 11112222222    23456899999999999999543333344555566788889999999887665 445666665


Q ss_pred             C
Q psy4393         183 A  183 (247)
Q Consensus       183 ~  183 (247)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>PRK13684 Ycf48-like protein; Provisional

Probab=96.38  E-value=0.39  Score=38.65  Aligned_cols=152  Identities=11%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEE-EECCCceEEEEE-ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKI-WELSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v-~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (247)
                      ...+.++.+.|++..++++ ..|.+.. ++ ..++....+ ......+..+.+.+++..++.+ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            3457888899987665554 4555532 12 122222222 2334567788889988877665 4565543223344332


Q ss_pred             EeecCC----CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeecc--CCCCCeEEEEECCCCCEEEEEEcCCeE
Q psy4393         147 KTLPAH----SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTL  220 (247)
Q Consensus       147 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i  220 (247)
                      .....+    ...+..+.+.+++..++++ .+|.+.. ....++.......  ........+.|..+++.++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            222211    2346778888887766554 5665543 3344433322211  1123466677776666544 5557888


Q ss_pred             EEEECC
Q psy4393         221 KLWDSK  226 (247)
Q Consensus       221 ~vwd~~  226 (247)
                      .-|+..
T Consensus       326 l~~~~~  331 (334)
T PRK13684        326 LRYVGS  331 (334)
T ss_pred             EEecCC
Confidence            877643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.19  E-value=0.52  Score=40.98  Aligned_cols=127  Identities=16%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             CCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEEC--CCCCEEEEEcC
Q psy4393          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWS--SDSRLLVSGSD   89 (247)
Q Consensus        13 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~   89 (247)
                      .+..|....++..-....+-+.-+.-++..+.-+....+.|||...+.....-. .....|.++.|.  |+++.+++.+-
T Consensus        15 ~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   15 NKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             CeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc
Confidence            455677777776555556666666655544444445579999998776543322 346679999995  68999999888


Q ss_pred             CCeEEEEECCC------c---eEEEEE--ecCC-ccEEEEEEcCCCCEEEEeeCCCCEEEEECC
Q psy4393          90 DKTLKIWELSS------G---KCLKTL--KGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (247)
Q Consensus        90 d~~i~v~d~~~------~---~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (247)
                      .+.|.+|.-..      +   ..++.+  ..+. .+|.+..|.++|.+++..+  ..+.++|-.
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            99998885421      1   122222  2232 4678889999988776543  457777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.11  E-value=0.83  Score=39.79  Aligned_cols=109  Identities=20%  Similarity=0.322  Sum_probs=69.3

Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe-cCCccEEEEEEc--CCCCEEEEeeCCCCEEEEECC-----C-
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVR-----T-  142 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~-----~-  142 (247)
                      ..-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..++|.  |+++.+++.+....|.++--.     . 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3334444444544454555689999998776332221 346678888884  688999998999999888531     1 


Q ss_pred             ---CeEEEee--cCCC-CCeEEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         143 ---GKCLKTL--PAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       143 ---~~~~~~~--~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                         ...++.+  ..+. .+|.+..|.++|.+++.+  +.++.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence               1123322  2222 578889999999766543  566778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.97  E-value=0.059  Score=28.66  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             CCeEEEEECCCC---CEEEEecCCCeEEEEeCCCc
Q psy4393         154 DPVSAVHFNRDG---SLIVSSSYDGLCRIWDTASG  185 (247)
Q Consensus       154 ~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~  185 (247)
                      +.+.+++|+|..   .+|+.+-..|.+.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>PRK10115 protease 2; Provisional

Probab=95.89  E-value=1.2  Score=39.72  Aligned_cols=111  Identities=8%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC------CeEEEEeC
Q psy4393         114 VFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWDT  182 (247)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~  182 (247)
                      +....++|++++++.+...     ..|++.|+.++..+......  .-..++|.+|++.|+....+      ..+..+++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            5567889999988876432     25889999887533221111  11458999998866554332      36777888


Q ss_pred             CCceee-eeeccCCCCCeE-EEEECCCCCEEEEEEc---CCeEEEEECC
Q psy4393         183 ASGQCL-KTLIDDDNPPVS-FVKFSPNGKYILAATL---DNTLKLWDSK  226 (247)
Q Consensus       183 ~~~~~~-~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~vwd~~  226 (247)
                      .++... ..+......... ....+.|+++++..+.   ++.+.+++..
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            877321 112222222222 3344558887765543   4589999853

>PHA03098 kelch-like protein; Provisional

Probab=95.87  E-value=0.29  Score=42.18  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCC------CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC--------CEEEEECCCCeE
Q psy4393          80 DSRLLVSGSDD------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVRTGKC  145 (247)
Q Consensus        80 ~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~v~d~~~~~~  145 (247)
                      +++.++.|+.+      ..+..||..+.+....-..............++.+++.|+.+.        .+..||..+.+-
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            45666666632      3578889877543221110011111112223456667776432        278888876542


Q ss_pred             E--EeecCCCCCeEEEEECCCCCEEEEecCC-----CeEEEEeCCCcee
Q psy4393         146 L--KTLPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQC  187 (247)
Q Consensus       146 ~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~  187 (247)
                      .  ..+.........+.+  ++.+++.|+.+     ..+.+||..+.+.
T Consensus       469 ~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        469 TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            1  111111111112222  56666777654     3677788776553

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.83  E-value=0.86  Score=37.63  Aligned_cols=180  Identities=17%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             CCCCCEEEEE--eCC----CeEEEEecCCCeEEEEEecccC---CeEEEEECCCCCEEEEEcC-----------------
Q psy4393          36 SPNGEWLASS--SAD----KLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSD-----------------   89 (247)
Q Consensus        36 s~~~~~l~~~--~~d----g~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-----------------   89 (247)
                      -|+|+.++++  +.+    |.+.++|.++.+..........   --.++-|.|-.+.+++...                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            4788877663  333    4577778776665555443221   2346777887787877642                 


Q ss_pred             ---CCeEEEEECCCceEEEEEecCCc--cEEEEEEc--CCCCEEEEeeC-CCCEE-EEECCCCe----EEEeecC-----
Q psy4393          90 ---DKTLKIWELSSGKCLKTLKGHSN--YVFCCNFN--PQSNLIVSGSF-DESVR-IWDVRTGK----CLKTLPA-----  151 (247)
Q Consensus        90 ---d~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~l~~~~~-d~~i~-v~d~~~~~----~~~~~~~-----  151 (247)
                         ...+++||+.+.+.++.+.-...  ....+.|.  |+...-++++. ...|. +|....++    .+..+..     
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               24799999999998888764332  23455554  44544444332 23333 33323332    1111111     


Q ss_pred             ------------CCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCce---eeeeeccCC---------------CCCeE
Q psy4393         152 ------------HSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ---CLKTLIDDD---------------NPPVS  200 (247)
Q Consensus       152 ------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~---~~~~~~~~~---------------~~~v~  200 (247)
                                  -..-++.+.+|.|.++|+... .+|.++.||+....   .........               ...-.
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq  377 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ  377 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence                        023468899999999887655 58999999987643   222211110               01125


Q ss_pred             EEEECCCCCEEEEEE
Q psy4393         201 FVKFSPNGKYILAAT  215 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~  215 (247)
                      .+..|-||+.|+..+
T Consensus       378 MvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  378 MVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -EEE-TTSSEEEEE-
T ss_pred             eEEEccCCeEEEEEe
Confidence            578889998887665

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630|consensus

Probab=95.83  E-value=0.14  Score=46.70  Aligned_cols=132  Identities=16%  Similarity=-0.007  Sum_probs=80.0

Q ss_pred             cEEEEEEcCCCCEEEEe--eCCCCEEEEECCCCeEEE-----eecCC------CCCeEEEEECCCCC-EEEEecCCCeEE
Q psy4393         113 YVFCCNFNPQSNLIVSG--SFDESVRIWDVRTGKCLK-----TLPAH------SDPVSAVHFNRDGS-LIVSSSYDGLCR  178 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~-----~~~~~------~~~i~~~~~~~~~~-~l~~~~~dg~i~  178 (247)
                      .+..+...+|+...+..  +.+-.|..||++....-.     .+..+      ..-..++.|+|.-. ..+++..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            34445556665544433  334468999997533211     11111      22346778888543 345666788887


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcccceee
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYR  245 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  245 (247)
                      +.-+........ ...-....++++|+|.|+.++.|-..|++.-|.........+-..|..++|+.-
T Consensus       182 V~~~~~~~~~v~-s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl  247 (1405)
T KOG3630|consen  182 VKSTKQLAQNVT-SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVL  247 (1405)
T ss_pred             hhhhhhhhhhhc-ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCccee
Confidence            765432211111 012234568999999999999999999999998766655556666666666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.82  E-value=0.78  Score=40.86  Aligned_cols=28  Identities=18%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             ccEEEEEEcCCCCEEEEeeCCCCEEEEEC
Q psy4393         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (247)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (247)
                      ..|..+..+|+|.+++..|..| |.|..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            4577889999999999888754 555554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.81  E-value=0.79  Score=38.50  Aligned_cols=145  Identities=23%  Similarity=0.308  Sum_probs=86.0

Q ss_pred             CCCCCEEEE-EcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCC-------EEEEeeCCCCEEEEECCCC-eEEEe
Q psy4393          78 SSDSRLLVS-GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-------LIVSGSFDESVRIWDVRTG-KCLKT  148 (247)
Q Consensus        78 ~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~-~~~~~  148 (247)
                      ..+.++|+. ++.-..++-.|++.|+.+.....+...  -+.+.|+..       .-+.|-.+..|--.|.|.. ..+..
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            345555544 333445666788888888888777664  356777431       2233445555555566532 22222


Q ss_pred             ecCC----CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         149 LPAH----SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       149 ~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ....    .....+..-. ...++|+++..|.|++||--. ...++....-+..|..+..+.+|+++++.+ ...+.+-|
T Consensus       554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d  630 (776)
T COG5167         554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTD  630 (776)
T ss_pred             eeehhccccccccccccc-cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEe
Confidence            1111    1112222222 345899999999999998533 223334444456788899999999988777 46788888


Q ss_pred             CCC
Q psy4393         225 SKV  227 (247)
Q Consensus       225 ~~~  227 (247)
                      .+.
T Consensus       631 ~~i  633 (776)
T COG5167         631 VPI  633 (776)
T ss_pred             ccc
Confidence            653

>KOG4499|consensus

Probab=95.76  E-value=0.59  Score=35.17  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=84.2

Q ss_pred             CCeEEEEECCCCCEEEEEcCC---------CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEE-eeCCCCEEEEE
Q psy4393          70 LGISDVAWSSDSRLLVSGSDD---------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWD  139 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d  139 (247)
                      .+.++-..+|+|+++.-.-.+         |.++.|-...  .+..+.....--..++|+.+.+.++. -+.+-.|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345566778999985432222         3444444321  12223333333456788877776654 45566777777


Q ss_pred             --CCCCeE-----EEeecC---CCC-CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECC-C
Q psy4393         140 --VRTGKC-----LKTLPA---HSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-N  207 (247)
Q Consensus       140 --~~~~~~-----~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~  207 (247)
                        ..+|..     +..++.   .+. .--.|+++.+|.+.+++-..+.|..+|..+++.+..+... ...+++++|-- +
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGkn  265 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGKN  265 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCCC
Confidence              555532     222221   111 1234566778888888888889999999999988877555 56789998863 3


Q ss_pred             CCEEEEE
Q psy4393         208 GKYILAA  214 (247)
Q Consensus       208 ~~~l~~~  214 (247)
                      -..|++.
T Consensus       266 ~d~~yvT  272 (310)
T KOG4499|consen  266 LDILYVT  272 (310)
T ss_pred             ccEEEEE
Confidence            3344443

>KOG1983|consensus

Probab=95.72  E-value=1.1  Score=41.70  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYD   58 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~   58 (247)
                      .....++|+|.-.++|.+..+|.++++....
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            4566789999999999999999999997643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.68  E-value=0.065  Score=28.51  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=24.8

Q ss_pred             CeEEEEECCCC---CEEEEEEcCCeEEEEECCC
Q psy4393         198 PVSFVKFSPNG---KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       198 ~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+.++.|+|..   .+|+.+-..|.|.|+|.++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57889999854   4777777789999999995

It contains a characteristic DLL sequence motif.

>KOG1916|consensus

Probab=95.64  E-value=0.012  Score=51.77  Aligned_cols=115  Identities=12%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             EecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecC--CCeEEEEE-----ecccCCeEEEEECC---CCCEEEEEcCCC
Q psy4393          23 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAY--DGKFEKTI-----SGHKLGISDVAWSS---DSRLLVSGSDDK   91 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~l~~~~~d~   91 (247)
                      +++..+.|-.+.|.... ..++  ..-|.+.||++.  .|+....+     ......+.-+.|+|   +..+++.+..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            35667888888885432 2222  223667888864  44433322     22333456667776   556777788888


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEE-----------EEcCCCCEEEEeeCCCCEEEEEC
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCC-----------NFNPQSNLIVSGSFDESVRIWDV  140 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~~i~v~d~  140 (247)
                      .+++....+... ..+++|...+..+           ..+|||..++..+.||.++.|.+
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            888887765322 2233343332222           35666666666666666666654

>KOG4460|consensus

Probab=95.48  E-value=0.84  Score=38.45  Aligned_cols=29  Identities=14%  Similarity=0.330  Sum_probs=21.7

Q ss_pred             eEEEEECCCC---CEEEEEEcCCeEEEEECCC
Q psy4393         199 VSFVKFSPNG---KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       199 v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~  227 (247)
                      +...+|+|+.   .+|..-+.|+.||+||...
T Consensus       168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence            4556788875   6777778889999998754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.46  E-value=1.9  Score=38.92  Aligned_cols=150  Identities=14%  Similarity=0.186  Sum_probs=89.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeE-------------EEEECC--CCCEEEEEcC----------CCeE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-------------DVAWSS--DSRLLVSGSD----------DKTL   93 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~i   93 (247)
                      +.+++.++.|+.+.-.|..+++....+.. ...+.             .+.-.|  .+..+++++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44777888899999999998887765532 11110             111112  2345555532          5889


Q ss_pred             EEEECCCceEEEEEecC---------Cc--------cE-EEEEEcCCCCEEEEeeC------------------CCCEEE
Q psy4393          94 KIWELSSGKCLKTLKGH---------SN--------YV-FCCNFNPQSNLIVSGSF------------------DESVRI  137 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~---------~~--------~v-~~~~~~~~~~~l~~~~~------------------d~~i~v  137 (247)
                      +-+|.++|+.+-.+...         .+        .+ ....+++...+++.+..                  .+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            99999999877655311         00        01 12345555555544321                  235677


Q ss_pred             EECCCCeEEEeecCCCCCe---------EEEEECC-CCC---EEEEecCCCeEEEEeCCCceeee
Q psy4393         138 WDVRTGKCLKTLPAHSDPV---------SAVHFNR-DGS---LIVSSSYDGLCRIWDTASGQCLK  189 (247)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~i---------~~~~~~~-~~~---~l~~~~~dg~i~v~d~~~~~~~~  189 (247)
                      .|+++|+....++.....+         .-+.+.. +|+   .++.++.+|.+.++|.++++.+.
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            7888888877765422111         1122322 553   78889999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.22  E-value=0.59  Score=38.64  Aligned_cols=83  Identities=11%  Similarity=0.211  Sum_probs=54.7

Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC-----------------CCEE-EEEEc
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-----------------GKYI-LAATL  216 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l-~~~~~  216 (247)
                      .+.+++.+|++++.++...=|.|.++|+.++..++.+..-....+..+.....                 ..+| +.+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            46788999999988887777899999999887655543322222222221111                 1133 34556


Q ss_pred             CCeEEEEECCCcceEEEEccC
Q psy4393         217 DNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       217 dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      -|.|.||+++++.-+..++.+
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEeC
Confidence            899999999998776665543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.14  E-value=1.6  Score=39.04  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCeEEEEECCC---------ceE--EE-EE--------ecCCccEEEEEEcCC---CCEE
Q psy4393          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSS---------GKC--LK-TL--------KGHSNYVFCCNFNPQ---SNLI  126 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~--~~-~~--------~~~~~~v~~~~~~~~---~~~l  126 (247)
                      ..|..+..+|+|..++..+..|...+.=.+.         ++.  .+ .+        ......|..+.|+|.   +..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4588889999999998888776543322111         111  10 11        122345677788775   3666


Q ss_pred             EEeeCCCCEEEEECC
Q psy4393         127 VSGSFDESVRIWDVR  141 (247)
Q Consensus       127 ~~~~~d~~i~v~d~~  141 (247)
                      +.=..|+.+++||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            666778888888874

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.02  E-value=0.34  Score=36.41  Aligned_cols=68  Identities=15%  Similarity=0.386  Sum_probs=50.3

Q ss_pred             ECCCCCEEEEecCCCeEEEEeCCCceeeeee------cc-------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +..++.+|++-+.+|.+++||+.+++.....      ..       .....|..+.++.+|.-+++-+ +|....|+.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456788999999999999999987754322      22       2446688889998888776655 68889998765


Q ss_pred             cc
Q psy4393         228 VT  229 (247)
Q Consensus       228 ~~  229 (247)
                      ..
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            53

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=94.93  E-value=1.3  Score=37.62  Aligned_cols=102  Identities=9%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCC---eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEeecCCCC
Q psy4393          80 DSRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSD  154 (247)
Q Consensus        80 ~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~  154 (247)
                      +|+..+.|+.++   .+..||..+.+-...-.-...........-++.+.+.|+   ...+||..+++-  +..+.....
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~  438 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD  438 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc
Confidence            466666766543   466788876543221100001111111223455556653   467888876542  122221111


Q ss_pred             CeEEEEECCCCCEEEEecCC-----CeEEEEeCCCce
Q psy4393         155 PVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQ  186 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~  186 (247)
                      ....+.  -+++..+.|+.+     ..+..||..+.+
T Consensus       439 ~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        439 NPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            222222  256677777754     235555555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.92  E-value=1.8  Score=35.87  Aligned_cols=197  Identities=16%  Similarity=0.130  Sum_probs=99.1

Q ss_pred             EEEECCCCCEEEEEeCCC-----------eEEEEecCCCeEE--EEEecccCC--eEEEEECCCCCEEEEEcC---C-Ce
Q psy4393          32 SVKFSPNGEWLASSSADK-----------LIKIWGAYDGKFE--KTISGHKLG--ISDVAWSSDSRLLVSGSD---D-KT   92 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg-----------~v~iw~~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~   92 (247)
                      .+.|.++++.++....+.           .|..|.+-+....  ..+......  ...+..++|+++++....   + ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            389999988776544322           3667766554322  334333333  457888999998764332   2 45


Q ss_pred             EEEEECCCc----eEEEEEec-CCccEEEEEEcCCCCEEEEee---CCCCEEEEECCCCeE---EEeecCCCCC--eEEE
Q psy4393          93 LKIWELSSG----KCLKTLKG-HSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGKC---LKTLPAHSDP--VSAV  159 (247)
Q Consensus        93 i~v~d~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~---~~~~~~~~~~--i~~~  159 (247)
                      +.+.+...+    .....+.. ..+....+... .+.+++...   ..+.|...++.....   ...+..+...  +..+
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~  332 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV  332 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence            788888764    22233332 23333333333 333443332   234566667766542   2244444443  4444


Q ss_pred             EECCCCCEEEEe-cCCC--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE--EEc--CCeEEEEECCCcceE
Q psy4393         160 HFNRDGSLIVSS-SYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATL--DNTLKLWDSKVVTPA  231 (247)
Q Consensus       160 ~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~--dg~i~vwd~~~~~~~  231 (247)
                      ..  .+.+|+.. -.++  .|.++++..+...........+.+..+...+++..+..  .+.  =+++..||+.+++..
T Consensus       333 ~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  333 SL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            43  44445443 3444  68899998333333333334445566665666654433  222  257888888777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2280|consensus

Probab=94.76  E-value=2.7  Score=37.05  Aligned_cols=161  Identities=11%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE-EE--ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      ++.+..+.|+.+..+| ....+|.+++|+........ .+  ......|..+.+..+|-.+++  .+|.+.+-+-.....
T Consensus        83 ~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~  159 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK  159 (829)
T ss_pred             CCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch
Confidence            3578899999776655 45799999999975432221 11  122334666666666644444  345444333211111


Q ss_pred             EEEEec---CCccEEE-EEEcCCCC--EEEEee-CCCCEEEEECCCCe-EEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         104 LKTLKG---HSNYVFC-CNFNPQSN--LIVSGS-FDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       104 ~~~~~~---~~~~v~~-~~~~~~~~--~l~~~~-~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      ...++.   ....-.| ..+.|..+  .++-.. ..+ ..++....+. ....+....+.+..+.++|+.++|+--...|
T Consensus       160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G  238 (829)
T KOG2280|consen  160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETG  238 (829)
T ss_pred             hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCC
Confidence            122221   1111011 11222211  111111 001 1111111111 0111222234677889999999999989999


Q ss_pred             eEEEEeCCCceeeeee
Q psy4393         176 LCRIWDTASGQCLKTL  191 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~  191 (247)
                      .+.+-+.+..+....+
T Consensus       239 ~i~~vs~D~~~~lce~  254 (829)
T KOG2280|consen  239 KIWVVSIDLSQILCEF  254 (829)
T ss_pred             cEEEEecchhhhhhcc
Confidence            9988887766554443

>KOG2247|consensus

Probab=94.55  E-value=0.0039  Score=51.04  Aligned_cols=139  Identities=14%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      -..-....|-|.+.-++.++.+-.+..||...... .... ..+...+++|..++..+ +.+...+.+.+||+.+.....
T Consensus        34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             ccccceeeEecCCCceehhhhhhHHHhhhhhccee-cccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence            33444567888776688888888888888643222 1211 23446678888877764 455667899999997642211


Q ss_pred             -EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393         106 -TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       106 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                       .+.+ ...-.-..|++....++.+...|.+.+++..+.+.+.....|...++++++.+.+..+
T Consensus       112 LE~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  112 LESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             HhccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence             1111 1111125788888888999899999999988877666666677788888988866533

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.16  E-value=0.37  Score=25.16  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=30.1

Q ss_pred             CCCCEEEEEE-cCCeEEEEECCCcceEEEEccCCccccee
Q psy4393         206 PNGKYILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYFY  244 (247)
Q Consensus       206 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  244 (247)
                      |++++|+++. .++.|.++|..+...+..+.....|+.|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            5778777766 47899999999888877777766677664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=1.8  Score=32.03  Aligned_cols=104  Identities=8%  Similarity=-0.035  Sum_probs=52.3

Q ss_pred             CCCEEEEEeCC--CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecCCccE
Q psy4393          38 NGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYV  114 (247)
Q Consensus        38 ~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v  114 (247)
                      +|.++.+.+.-  ..|++|++.+++...+..-....+..--...-++.+ .-.=.+|.-..+|..+-+++..+.-. +.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence            44555554433  468999998887665543221112111111112322 23345777778888776665544322 222


Q ss_pred             EEEEEcCCCCEEEEeeCCCCEEEEECCCCe
Q psy4393         115 FCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (247)
                      +.+.  .++.-++.+.....++.-|..+..
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhh
Confidence            3332  334445555555566666665443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.96  E-value=2.5  Score=33.31  Aligned_cols=115  Identities=15%  Similarity=0.266  Sum_probs=70.8

Q ss_pred             EEEEEEcCCCCEEEEeeCCCCEEEEECC------CCeE-EEeecC-----CCCCeEEEEECCCCC------------EEE
Q psy4393         114 VFCCNFNPQSNLIVSGSFDESVRIWDVR------TGKC-LKTLPA-----HSDPVSAVHFNRDGS------------LIV  169 (247)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~------~~~~-~~~~~~-----~~~~i~~~~~~~~~~------------~l~  169 (247)
                      -+.++++|.+.+.++....+...+||..      ..+. +..+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4678999999999988888899999986      1222 222321     122455666654322            357


Q ss_pred             EecCCCeEEEEeCCCcee---ee-eeccC--CCCCeEEEEECCC--CCEEEEEE-cCCeEEEEECCCc
Q psy4393         170 SSSYDGLCRIWDTASGQC---LK-TLIDD--DNPPVSFVKFSPN--GKYILAAT-LDNTLKLWDSKVV  228 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~---~~-~~~~~--~~~~v~~~~~s~~--~~~l~~~~-~dg~i~vwd~~~~  228 (247)
                      .+++||+|.-|...-...   .. .....  .......+++...  +.+|+.+. ..++|.|||..-.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence            788999999998543222   11 11111  1233455666543  66777665 6799999997644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897|consensus

Probab=93.27  E-value=6.5  Score=35.99  Aligned_cols=192  Identities=12%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             CCeEEEEECCC-CCEEEEEeC----------CCeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          28 KAVSSVKFSPN-GEWLASSSA----------DKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        28 ~~v~~~~~s~~-~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      ..|.++.|..| +.+++.|..          .|.+.++.....+....+..+  .+.+.++..- +|+++  ++-+..|+
T Consensus       775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkll--A~In~~vr  851 (1096)
T KOG1897|consen  775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLL--AGINQSVR  851 (1096)
T ss_pred             eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEE--EecCcEEE
Confidence            34556668777 566666642          467777777663433333322  3334444322 45544  34567899


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe--EEEee-cCCCCCeEEEEECCCCCEEEEe
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTL-PAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      +|++.+++.++.-..+...+..+...-.+..++.|.--+++.+.-.+..+  ..... ..++...+++.+-.+.. ++.+
T Consensus       852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylga  930 (1096)
T KOG1897|consen  852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGA  930 (1096)
T ss_pred             EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEee
Confidence            99998886666555566677788888889999999988888776554433  22221 13344566666654433 4444


Q ss_pred             cCCCeEEEEeCCCc--e--------eeeeecc-------CCCCCeEE--EEECCCCCEEEEEEcCCeEEEE
Q psy4393         172 SYDGLCRIWDTASG--Q--------CLKTLID-------DDNPPVSF--VKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       172 ~~dg~i~v~d~~~~--~--------~~~~~~~-------~~~~~v~~--~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      ..+|.+.+-...+.  +        ....+..       .+..-|..  -..+|-+..++.|+.+|.|-+-
T Consensus       931 e~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  931 ENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             cccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence            55565554432211  0        0111110       11222222  1234556668899999988765

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.18  E-value=2.1  Score=32.70  Aligned_cols=138  Identities=17%  Similarity=0.273  Sum_probs=70.9

Q ss_pred             EEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCC------ccEEEEEEcCC
Q psy4393          52 KIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHS------NYVFCCNFNPQ  122 (247)
Q Consensus        52 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~  122 (247)
                      .+||..+++....-.....-+.+-.+-+||+.+.+|+..   ..+++++..+...........      ..-.....-++
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            467877665433222122223344577899999888752   357777764411001111111      11112334568


Q ss_pred             CCEEEEeeCCCC-EEEEECCCC-e-EEE-eecC------CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         123 SNLIVSGSFDES-VRIWDVRTG-K-CLK-TLPA------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       123 ~~~l~~~~~d~~-i~v~d~~~~-~-~~~-~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      |+.++.|+.... ..+|.-+.. . ... .+..      ...----+...|+|++++.+..+.  .+||..+.+.++.+
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            999988887643 334443211 1 111 1110      001112356789999998887654  46788877665554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.84  E-value=4.8  Score=33.34  Aligned_cols=146  Identities=17%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce-----EE
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-----CL  104 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~  104 (247)
                      ...+..+++|.+++.+.....++-|+.-.......-......+..+.|.+++..++++ ..|.+. +....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            4455667888777765433222333321111122223335568899999998877665 556653 3444443     12


Q ss_pred             EEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec---CCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         105 KTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       105 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      .....  ....+..+.+.++++.+++| ..|.+... ...++.-...+   .-....+.+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            22221  12347778888887766665 55655544 23444333322   123457788887777766655 5776544


Q ss_pred             E
Q psy4393         180 W  180 (247)
Q Consensus       180 ~  180 (247)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            3

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.82  E-value=1.8  Score=31.23  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCC------CEEEEEEcCCeEEEEECC
Q psy4393         197 PPVSFVKFSPNG------KYILAATLDNTLKLWDSK  226 (247)
Q Consensus       197 ~~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~  226 (247)
                      ..+..++|||.|      .+|++.+.+|.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            368889999954      488889999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.48  E-value=1.3  Score=33.28  Aligned_cols=66  Identities=18%  Similarity=0.301  Sum_probs=45.0

Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCCeEEEE-------Ee-------cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          35 FSPNGEWLASSSADKLIKIWGAYDGKFEKT-------IS-------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        35 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      +..++.+|++.+.+|.+++||+.+.+....       +.       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            445788898889999999999987665322       11       2334577777777777666554 46677777653


Q ss_pred             c
Q psy4393         101 G  101 (247)
Q Consensus       101 ~  101 (247)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.46  E-value=1.9  Score=31.04  Aligned_cols=30  Identities=13%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             CeEEEEECCCC------CEEEEecCCCeEEEEeCCC
Q psy4393         155 PVSAVHFNRDG------SLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       155 ~i~~~~~~~~~------~~l~~~~~dg~i~v~d~~~  184 (247)
                      .+..++|+|.|      -+|++-+.++.+.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68889999954      3788889999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916|consensus

Probab=92.34  E-value=0.16  Score=45.29  Aligned_cols=112  Identities=16%  Similarity=0.320  Sum_probs=63.0

Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEE-----------EECCCCCEEEEEcCCCeEEEEECCC-c
Q psy4393          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV-----------AWSSDSRLLVSGSDDKTLKIWELSS-G  101 (247)
Q Consensus        34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~~i~v~d~~~-~  101 (247)
                      -|.++.-++..+-.++.+++........ ..+.+|...+.++           ..+|||..+++++.||.++.|.+.- +
T Consensus       190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             ccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence            3344555666666778888765432211 2233344444333           3589999999999999998887642 2


Q ss_pred             ----eEEEEEecCCc-cEEEEEEcCCC---------CEEEEe-eCCCCEEEEECCCCeEE
Q psy4393         102 ----KCLKTLKGHSN-YVFCCNFNPQS---------NLIVSG-SFDESVRIWDVRTGKCL  146 (247)
Q Consensus       102 ----~~~~~~~~~~~-~v~~~~~~~~~---------~~l~~~-~~d~~i~v~d~~~~~~~  146 (247)
                          .++...+.|++ +-.|..++.+.         .+.+++ ..++.+++|.....+++
T Consensus       269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence                34445555553 22222222111         233443 44567888887666654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.34  E-value=0.78  Score=37.95  Aligned_cols=159  Identities=12%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-E-ecccC----CeE-EEEECCCCCEEEEEcCCCeEEEE-E
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-I-SGHKL----GIS-DVAWSSDSRLLVSGSDDKTLKIW-E   97 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~v~-d   97 (247)
                      -...|..+-..|||+.|+.-+. ..+.+++..+...... + ....+    .|+ .+..-..|.-+++.+.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3466778889999998876443 5677887754432211 1 11011    121 11122345567888899988877 4


Q ss_pred             CCCc-e----EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393          98 LSSG-K----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        98 ~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ...+ .    .++.++-....+..+.-..+.+-+++-...|.+.++.....+.+-...... ...-++++|++.++++- 
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~~~Ll~e-  375 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQAYLLSE-  375 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCcccchheee-
Confidence            4332 1    112222222223222222233456666777888777655444332222222 45567899999988764 


Q ss_pred             CCCeEEEEeCCCcee
Q psy4393         173 YDGLCRIWDTASGQC  187 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~  187 (247)
                      ..|.++++.+++..+
T Consensus       376 ~~gki~~~~l~Nr~P  390 (733)
T COG4590         376 DQGKIRLAQLENRNP  390 (733)
T ss_pred             cCCceEEEEecCCCC
Confidence            467888888776543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.27  E-value=5.5  Score=32.59  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             CEEEEEcCCCeEEEEECCCceEEEEEecCC--ccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEE
Q psy4393          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSA  158 (247)
Q Consensus        82 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~  158 (247)
                      ..+.++..+|.+.-.|..++..+.......  ..+..-....+|+ ++.++.++.++.+|.++|+.+....... ..+..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            345566778888888888877543222111  1111111222454 7778888899999998898877766544 11111


Q ss_pred             EEECCCCCEEEEecCCCeEEEEeCCCceee
Q psy4393         159 VHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      -..-.++. +..++.++.+...|..+++.+
T Consensus       148 ~~v~~~~~-v~~~s~~g~~~al~~~tG~~~  176 (370)
T COG1520         148 PPVVGDGT-VYVGTDDGHLYALNADTGTLK  176 (370)
T ss_pred             CcEEcCcE-EEEecCCCeEEEEEccCCcEE
Confidence            12222333 344446788888888877653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.14  E-value=4.5  Score=31.28  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=91.8

Q ss_pred             eEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEEEEecCCc-cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe
Q psy4393          72 ISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (247)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++......-... .-..+.... ..+....-.++...+||..+.+.+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence            44577767788777877766  789999999987655442221 112233332 23333445678889999999888877


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-CC---CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DN---PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +.-. +.=..++  .++..|+.......+.++|..+-+....+... ..   ..++-+.+- +|...|=.=....|..-|
T Consensus       126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            7543 2334555  45666777666778999998876655544221 12   234556664 444333333566777778


Q ss_pred             CCCcceEEEE
Q psy4393         225 SKVVTPAIIC  234 (247)
Q Consensus       225 ~~~~~~~~~~  234 (247)
                      ..++.....+
T Consensus       202 p~tG~V~~~i  211 (264)
T PF05096_consen  202 PETGKVVGWI  211 (264)
T ss_dssp             TTT-BEEEEE
T ss_pred             CCCCeEEEEE
Confidence            7777766554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2377|consensus

Probab=92.03  E-value=6.4  Score=32.89  Aligned_cols=127  Identities=12%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE----EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL----KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      .+.|.++.|++|.+.+|.-..+..|.+++....+..    ..-+.....|....|+.+.. +|.....| +.+|.....+
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhh
Confidence            457999999999999999999999999987443321    12234445688888887644 44444333 5566544332


Q ss_pred             eeeeeccCCCCCeEEEEECCCCCEEEEEEc--CCeEEEEECCCc----ceEEEEccCCc
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATL--DNTLKLWDSKVV----TPAIICSTPLN  239 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~----~~~~~~~~~~~  239 (247)
                      ..-++...+...|+...|.++.+.++.++.  .+.+.=+..+++    -|......|..
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~kLPkfe~~~p~~  202 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMSKLPKFEIELPAA  202 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceeeeccceeecCCCC
Confidence            222333445566777888888876655543  344444444433    35445444444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.94  E-value=8.7  Score=34.23  Aligned_cols=142  Identities=13%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEE------EEe----------------cccCCeEEEEECC--CCCEEEEEcCCCeEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEK------TIS----------------GHKLGISDVAWSS--DSRLLVSGSDDKTLK   94 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   94 (247)
                      +++++.|. .+.|.||+........      .+.                .....|+-|....  ....|+.+.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66676654 7789999864321110      000                0111244443332  345788899999999


Q ss_pred             EEECCC-------c----e---------EEEEEecCCccEEEEEEc--CCCCEEEEeeCCCCEEEEECCCC--eE-EEee
Q psy4393          95 IWELSS-------G----K---------CLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVRTG--KC-LKTL  149 (247)
Q Consensus        95 v~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~--~~-~~~~  149 (247)
                      +|.+++       .    .         +...++ -...++.++++  ...++||+++....|.||-....  +. ...-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997632       0    0         011112 12357888887  77788888888888888754331  11 1111


Q ss_pred             cCCCCCeEEEEECCCC------CEEEEecCCCeEEEEeC
Q psy4393         150 PAHSDPVSAVHFNRDG------SLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       150 ~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~v~d~  182 (247)
                      ..+..-|.++.|-++.      ..+++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1244567788886643      27778888998888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1900|consensus

Probab=91.85  E-value=6.7  Score=37.00  Aligned_cols=136  Identities=16%  Similarity=0.339  Sum_probs=79.2

Q ss_pred             eCCCeEEEEecCCCeEEEEEecccCCeEEEE--------ECCCCCEEEEEcCCCeEEEEECC----CceE---E--EEEe
Q psy4393          46 SADKLIKIWGAYDGKFEKTISGHKLGISDVA--------WSSDSRLLVSGSDDKTLKIWELS----SGKC---L--KTLK  108 (247)
Q Consensus        46 ~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~v~d~~----~~~~---~--~~~~  108 (247)
                      +.|..+.+|+..++.....+.+-...|..+.        |-|.=++++..+.--.|.++-+.    ++..   .  ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4588999999987655555544444444332        22333344433333445454332    1111   0  1222


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCCEEEEEC----CCC---e-E----------------EEeec-CCCCCeEEEEECC
Q psy4393         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----RTG---K-C----------------LKTLP-AHSDPVSAVHFNR  163 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~----~~~---~-~----------------~~~~~-~~~~~i~~~~~~~  163 (247)
                      .....|.++....+|+.+++| .||.  +|.+    ..+   + +                +..+. .+..+|..+.++.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            234457888877778777765 4554  4443    111   0 0                11222 4466899999998


Q ss_pred             CCCEEEEecCCCeEEEEeCCC
Q psy4393         164 DGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ....+++=+..|.+.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            888999999999999999976

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.70  E-value=6.4  Score=32.19  Aligned_cols=192  Identities=15%  Similarity=0.050  Sum_probs=97.9

Q ss_pred             EEEEEeCCCeEEEEecCCCeEEEEEeccc--CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCC-ccEEEE
Q psy4393          41 WLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYVFCC  117 (247)
Q Consensus        41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~  117 (247)
                      .++++..+|.+.-.|..++..+.......  ..+..-.+..+|+ ++.++.++.+..+|..+++......... ..+...
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            34445677877777777776554322211  1222222223555 7778888888889998888776665444 111111


Q ss_pred             EEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC---CeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeec
Q psy4393         118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLI  192 (247)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~  192 (247)
                      ..-.++ .+..++.++.+...|..+++..........   .+..-....++ .++.+..  ++.+.-.|+.+++..-...
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence            222232 344444778898888888887655433221   11100011223 3444444  5567777777766443210


Q ss_pred             ----cCCC-----CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         193 ----DDDN-----PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       193 ----~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                          ....     ..+..-...- +.-++.++.++.+.-.|..+++++=.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence                0100     0000000001 12235556667677777777766655554

>KOG2247|consensus

Probab=91.51  E-value=0.029  Score=46.25  Aligned_cols=136  Identities=9%  Similarity=0.194  Sum_probs=86.1

Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecC
Q psy4393          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPA  151 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~  151 (247)
                      ....|.|.+..++.++.+..+..||-.. +...... .......++|+-++..+ +.+-..+.+.+||+.+.....-...
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            3467888777788888888888888543 3222222 23344567787766554 4456778999999975432111111


Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEE
Q psy4393         152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI  211 (247)
Q Consensus       152 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  211 (247)
                      ....-.-+.|++.+..++.+...|.+.+++..+.+.... ...+...+.++++.+.+..+
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv-~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV-MGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhh-hcccccceeEEEecccceee
Confidence            111122267888888888888999999998876543322 22355667888888876433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.29  E-value=1.8  Score=37.43  Aligned_cols=38  Identities=13%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             CeEEEEECC----CCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         198 PVSFVKFSP----NGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       198 ~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ....+++++    +..+|++.+.|+++|+||.++...+.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            345566666    77899999999999999999998865543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.05  E-value=6.5  Score=31.06  Aligned_cols=198  Identities=13%  Similarity=0.204  Sum_probs=106.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecC------CC-eEEEEEec-----ccCCeEEEEECCCCC------------EEE
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAY------DG-KFEKTISG-----HKLGISDVAWSSDSR------------LLV   85 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~   85 (247)
                      -..++|+|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3578999998877777778899999975      11 12222221     123466777764332            256


Q ss_pred             EEcCCCeEEEEECCCceE-----EEEEecC-CccEE-EEEEc--CCCCEEEEe-eCCCCEEEEECCCCeEEE--ee----
Q psy4393          86 SGSDDKTLKIWELSSGKC-----LKTLKGH-SNYVF-CCNFN--PQSNLIVSG-SFDESVRIWDVRTGKCLK--TL----  149 (247)
Q Consensus        86 ~~~~d~~i~v~d~~~~~~-----~~~~~~~-~~~v~-~~~~~--~~~~~l~~~-~~d~~i~v~d~~~~~~~~--~~----  149 (247)
                      .++++|+|.-|...-...     ...+... ...+. .+++.  ..+.+|+.. -..++|.+||-.-.+...  .+    
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            778999999998532221     1112111 12222 23333  334555544 457889999864322110  01    


Q ss_pred             -cCCCCC-----------eEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC--CCCeEEEEECC------CCC
Q psy4393         150 -PAHSDP-----------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSP------NGK  209 (247)
Q Consensus       150 -~~~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~s~------~~~  209 (247)
                       .+.-.+           |+-..-.++...=+.|..-|.|.+||+. ++.++++....  +.+ ..++..|      .|.
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaP-WG~a~APa~FG~~sg~  262 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAP-WGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCC-ceeeeChhhhCCCCCC
Confidence             111111           1111122222222333445789999976 45555553221  222 2344433      577


Q ss_pred             EEEEEEcCCeEEEEECCCcc
Q psy4393         210 YILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +|+.---||+|..||..++.
T Consensus       263 lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             eEEeecCCceeEEecCCCCc
Confidence            88877789999999987654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.76  E-value=5.2  Score=35.55  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CCCEEEEeeCCCCEEEEECCC-------C----e---------EEEeecCCCCCeEEEEEC--CCCCEEEEecCCCeEEE
Q psy4393         122 QSNLIVSGSFDESVRIWDVRT-------G----K---------CLKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       122 ~~~~l~~~~~d~~i~v~d~~~-------~----~---------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~v  179 (247)
                      +...|+.+..||.|.+|.+..       .    .         +...+.. ...++.++++  ...+++|+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence            456788899999999996521       0    0         1122222 3467889998  77788888887777777


Q ss_pred             EeCCCc--eeeeeeccCCCCCeEEEEECCC-----CC-EEEEEEcCCeEEEEECC
Q psy4393         180 WDTASG--QCLKTLIDDDNPPVSFVKFSPN-----GK-YILAATLDNTLKLWDSK  226 (247)
Q Consensus       180 ~d~~~~--~~~~~~~~~~~~~v~~~~~s~~-----~~-~l~~~~~dg~i~vwd~~  226 (247)
                      |-....  +....-.......|.+++|-++     |. +|++++-.|.+.+|+.+
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            754332  1111101112223445555443     32 78889999999998873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.75  E-value=7.5  Score=31.24  Aligned_cols=143  Identities=15%  Similarity=0.279  Sum_probs=78.7

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCe------EEEEECCC--c--eEE-----EEEecCCc--------cEEEEEEcCCCCEE
Q psy4393          70 LGISDVAWSSDSRLLVSGSDDKT------LKIWELSS--G--KCL-----KTLKGHSN--------YVFCCNFNPQSNLI  126 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~d~~------i~v~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~~~l  126 (247)
                      ++...+.+.+++..+++.++++.      +..+++..  +  ..+     ..++...+        ....+++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34677778765556666666666      44444432  0  000     01111111        23356777778877


Q ss_pred             EEeeCC------CCEEEEECCCCeEEEeec---------------CCCCCeEEEEECCCCCEEEEecCC-----C-----
Q psy4393         127 VSGSFD------ESVRIWDVRTGKCLKTLP---------------AHSDPVSAVHFNRDGSLIVSSSYD-----G-----  175 (247)
Q Consensus       127 ~~~~~d------~~i~v~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d-----g-----  175 (247)
                      ++.-.+      ..|..++.. |+.+..+.               .......+|+++|+|+.|+++.+.     +     
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            776555      667788865 55433331               122357889999999966655432     2     


Q ss_pred             ------eEEEEeCCC-ceeeeee--ccC------CCCCeEEEEECCCCCEEEE
Q psy4393         176 ------LCRIWDTAS-GQCLKTL--IDD------DNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       176 ------~i~v~d~~~-~~~~~~~--~~~------~~~~v~~~~~s~~~~~l~~  213 (247)
                            .+..||..+ ++....+  ...      ....+..+.+-+++++|+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  233455554 2222222  111      3456778888899987765

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.68  E-value=3.5  Score=35.76  Aligned_cols=36  Identities=44%  Similarity=0.778  Sum_probs=28.0

Q ss_pred             eEEEEECC----CCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          72 ISDVAWSS----DSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        72 v~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ...+++++    +..++++.+.|+.+++||+.+++++...
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            45566666    6788999999999999999999886554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.44  E-value=1.4  Score=36.56  Aligned_cols=161  Identities=17%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE-EEEe-cCCc----cEE-EEEEcCCCCEEEEeeCCCCEEEE-EC
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL-KTLK-GHSN----YVF-CCNFNPQSNLIVSGSFDESVRIW-DV  140 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~v~-d~  140 (247)
                      ...+..+-..|||+.+..-+. ..+.++++.+.... +++- ...+    .|. .+..-..+..+..+..||.+.-| |.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            345667778999998876655 56778887653311 1111 1011    011 11112345567778888888765 65


Q ss_pred             CCCe-----EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         141 RTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       141 ~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      +.+.     .++.++-...++..+.-..+.+-+++-..+|.+.++.....+.+-  ...--.....+++||.+.+|+.-.
T Consensus       299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL--~~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL--FERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee--hhhhhcCcceeeeCcccchheeec
Confidence            5332     122223222334433333344566777778888777554433221  111112345688999999887654


Q ss_pred             cCCeEEEEECCCcceEEE
Q psy4393         216 LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       216 ~dg~i~vwd~~~~~~~~~  233 (247)
                       .|.++++...+..|-++
T Consensus       377 -~gki~~~~l~Nr~Peis  393 (733)
T COG4590         377 -QGKIRLAQLENRNPEIS  393 (733)
T ss_pred             -CCceEEEEecCCCCCcc
Confidence             57899998887776554

>PLN02153 epithiospecifier protein

Probab=90.20  E-value=8.6  Score=31.04  Aligned_cols=147  Identities=14%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCC-----CeEEEEECCCceEEE--EEec---CCccEEEEEEcCCCCEEEEeeCC-----------CCEEEE
Q psy4393          80 DSRLLVSGSDD-----KTLKIWELSSGKCLK--TLKG---HSNYVFCCNFNPQSNLIVSGSFD-----------ESVRIW  138 (247)
Q Consensus        80 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~v~  138 (247)
                      ++++++.|+.+     ..+.+||.++.+-..  .+..   ............++.+.+.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            35566666643     257788987754322  1100   11111112222345666777653           146778


Q ss_pred             ECCCCeEEEeecCCC-----CCeEEEEECCCCCEEEEecCC-------------CeEEEEeCCCceeeeeeccC--CCCC
Q psy4393         139 DVRTGKCLKTLPAHS-----DPVSAVHFNRDGSLIVSSSYD-------------GLCRIWDTASGQCLKTLIDD--DNPP  198 (247)
Q Consensus       139 d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~~~~~~~--~~~~  198 (247)
                      |..+.+=. .+....     ..-.+++. -++++++.++.+             ..+.+||+.+.+....-...  ....
T Consensus       165 d~~~~~W~-~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r  242 (341)
T PLN02153        165 NIADGKWV-QLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR  242 (341)
T ss_pred             ECCCCeEe-eCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence            88765421 111110     00111222 245555555432             35788998876544321111  0111


Q ss_pred             eEEEEECCCCCEEEEEEcC--------------CeEEEEECCCc
Q psy4393         199 VSFVKFSPNGKYILAATLD--------------NTLKLWDSKVV  228 (247)
Q Consensus       199 v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~~~  228 (247)
                      ....+...++++++.|+..              +.+..||..+.
T Consensus       243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            1111122346777777741              25778887554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.02  E-value=7.2  Score=29.87  Aligned_cols=134  Identities=16%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             EEEEECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCC---CCEEEEECCC--CeE-EEe----ecCCCCCeEEEEE
Q psy4393          93 LKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFD---ESVRIWDVRT--GKC-LKT----LPAHSDPVSAVHF  161 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~--~~~-~~~----~~~~~~~i~~~~~  161 (247)
                      -.+||+.+.+.. .+....+. ...-.+.++|+++.+|+..   ..+++++...  +.+ ...    +.. ...-..+..
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceE
Confidence            347898887543 33322221 1122467899999998752   3478887644  011 111    111 111223455


Q ss_pred             CCCCCEEEEecCCC-eEEEEeCCCc--eeeee-ecc-----CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         162 NRDGSLIVSSSYDG-LCRIWDTASG--QCLKT-LID-----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       162 ~~~~~~l~~~~~dg-~i~v~d~~~~--~~~~~-~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      -|||+.|+.|+... ...+|.....  ..... +..     ....-.-.+...|||++++.+..+  -.|||.+..+.
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v  201 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTV  201 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeE
Confidence            68999999988775 3445543211  11111 111     011112346678999999988764  45567766544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.89  E-value=8.8  Score=30.69  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-----CCeEEEEECCCceEEEEEec-C-CccEEEEEEcCCCCEEEEeeCCCC----EEEEECCCCe
Q psy4393          80 DSRLLVSGSD-----DKTLKIWELSSGKCLKTLKG-H-SNYVFCCNFNPQSNLIVSGSFDES----VRIWDVRTGK  144 (247)
Q Consensus        80 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~d~~----i~v~d~~~~~  144 (247)
                      +++..+.|+.     ...+..||+.+.+-.. +.. . ...........++.+.+.|+.++.    +..||..+.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFE-LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeE-CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4555566654     2357788887655322 211 1 111112222345677777776542    4678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=89.62  E-value=12  Score=31.85  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCC-----CeEEEEECCCceEEEEEec---CCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeEE
Q psy4393          80 DSRLLVSGSDD-----KTLKIWELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCL  146 (247)
Q Consensus        80 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~  146 (247)
                      ++.+++.|+.+     ..+..||+.+.+....-..   ...........-++.+.+.|+.++     .+..||+.+.+-.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            34555666544     3577889877653321111   111111111223456677776543     3677887765421


Q ss_pred             EeecC------CCCCeEEEEECCCCCEEEEecCC----CeEEEEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEE
Q psy4393         147 KTLPA------HSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       147 ~~~~~------~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~  214 (247)
                       .+..      .......+.  -++++++.++.+    ..+.+||+.+.+....-...  ........+..-++++++.|
T Consensus       308 -~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~G  384 (470)
T PLN02193        308 -HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFG  384 (470)
T ss_pred             -eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence             1111      011111122  256677777655    45889999887654321110  11111111222356677777


Q ss_pred             EcC--------------CeEEEEECCCc
Q psy4393         215 TLD--------------NTLKLWDSKVV  228 (247)
Q Consensus       215 ~~d--------------g~i~vwd~~~~  228 (247)
                      +..              +.+.+||..+.
T Consensus       385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        385 GEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CccCCccccccCccceeccEEEEEcCcC
Confidence            743              24778887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.33  E-value=9.2  Score=30.12  Aligned_cols=151  Identities=12%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEEEEEcCCCeEEEEECCCce---E
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---C  103 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~  103 (247)
                      .-+..+.++  ++++..+..+.-++|.|+.+......+..-.. .. .-.|.-.|++...+..+.-+.+.|+.+.+   .
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy-aygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY-AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCce-EEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            344556665  34555666777799999887654433322111 11 12345568888777755555578887643   2


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-c-CCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-P-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      .............+..+  |+..+.+..|+-+.+.|+.......-+ . .-...+.++..+++..+++...  .-+.+.|
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd  239 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVD  239 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence            22222223333445555  567777788999999999765432111 1 1122577777777665555432  2344555


Q ss_pred             CCCc
Q psy4393         182 TASG  185 (247)
Q Consensus       182 ~~~~  185 (247)
                      ..+.
T Consensus       240 ~s~~  243 (370)
T COG5276         240 VSGP  243 (370)
T ss_pred             cCCC
Confidence            5443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.20  E-value=12  Score=31.27  Aligned_cols=31  Identities=19%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .|..++..+..+.|++.+.+|.|.+||....
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            4788889998899999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.10  E-value=12  Score=31.10  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=77.1

Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCceE--EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe-----E
Q psy4393          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-----C  145 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~  145 (247)
                      ..+..++++..++.+.....++-||-  +..  ...-......+..+.+.+++.+++++ ..|.+.. ....++     .
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence            34556677776666644433333332  221  11122234457788888998887766 4455433 222332     1


Q ss_pred             EEeecC--CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393         146 LKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (247)
Q Consensus       146 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  221 (247)
                      ......  ....+..+.+.+++..+++| ..|.+... ...++.-....  ..-...+..+.|.++++.+++| .+|.|.
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il  394 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL  394 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence            222222  12347888898887766655 56765554 33344322222  1223456788887776655554 577776


Q ss_pred             EE
Q psy4393         222 LW  223 (247)
Q Consensus       222 vw  223 (247)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            55

>KOG1900|consensus

Probab=89.10  E-value=20  Score=34.09  Aligned_cols=139  Identities=15%  Similarity=0.331  Sum_probs=77.7

Q ss_pred             cCCCeEEEEECCCceEEEEEecCCccEEEEEE-cC-------CCCEEEEeeCCCCEEEEECC----CCe-E----EEeec
Q psy4393          88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF-NP-------QSNLIVSGSFDESVRIWDVR----TGK-C----LKTLP  150 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~d~~i~v~d~~----~~~-~----~~~~~  150 (247)
                      +-|..+.+|+.+++.....+.+....|..+.. .|       .=+++.....--.|.++-+.    ++. .    ...+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35788999999986555555444444433322 12       11222222222334444321    111 0    12233


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCeEE--EEeCCCc---e-e-------------eee---eccCCCCCeEEEEECCCC
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASG---Q-C-------------LKT---LIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~--v~d~~~~---~-~-------------~~~---~~~~~~~~v~~~~~s~~~  208 (247)
                      .....|+++....+|+.+++|- ||.+.  +|....+   + +             +..   +...+..+|..+..+...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            4455688999888999877665 55332  2222221   0 1             011   111335589999999999


Q ss_pred             CEEEEEEcCCeEEEEECCC
Q psy4393         209 KYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd~~~  227 (247)
                      ..+++=+..|.|.+||...
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            9999999999999999865

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.77  E-value=10  Score=29.89  Aligned_cols=150  Identities=16%  Similarity=0.152  Sum_probs=85.8

Q ss_pred             CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE--
Q psy4393          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--  146 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--  146 (247)
                      -+.++.++  +++...+..+.-+++.|+.+...-..+.  ...+...+  |.-.|++...+..+.-+-+.|+.+.+..  
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            35556665  4567777788889999998754322221  11133333  4445788888886777788888765422  


Q ss_pred             -EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         147 -KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       147 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                       -...........++++  |++-+.+..|+-+.+.|+.......-+.. .-.+.+..+..+++..+++..+  --+.+-|
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd  239 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVD  239 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence             1222222233455554  56667777899899999876543222111 1223566777777665555443  3344445


Q ss_pred             CCCc
Q psy4393         225 SKVV  228 (247)
Q Consensus       225 ~~~~  228 (247)
                      ....
T Consensus       240 ~s~~  243 (370)
T COG5276         240 VSGP  243 (370)
T ss_pred             cCCC
Confidence            4443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.38  E-value=11  Score=30.03  Aligned_cols=106  Identities=14%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCC-----CeEEEEECCCceEE---EEEecCCccE--EEEEEcCCCCEEEEeeCC-----CCEEEEECCCCe
Q psy4393          80 DSRLLVSGSDD-----KTLKIWELSSGKCL---KTLKGHSNYV--FCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGK  144 (247)
Q Consensus        80 ~~~~l~~~~~d-----~~i~v~d~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~  144 (247)
                      ++..++.|+.+     ..+..||+.+.+..   ..+.......  .+++. -++.+.+.|+..     ..+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            44556666654     25666777665431   1111111111  11122 245666666642     357788887654


Q ss_pred             E--EEeecCCCCCeEEEEECCCCCEEEEecCCC----eEEEEeCCCcee
Q psy4393         145 C--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQC  187 (247)
Q Consensus       145 ~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~  187 (247)
                      -  +..+.... .....+...++++++.|+.++    .+..||..+.+.
T Consensus       151 W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            2  21121111 111122233567777777654    356888887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.17  E-value=11  Score=29.60  Aligned_cols=95  Identities=18%  Similarity=0.333  Sum_probs=55.9

Q ss_pred             CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc------CCCeEEEEECCCceEEEEEec-----CCccEEEE
Q psy4393          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS------DDKTLKIWELSSGKCLKTLKG-----HSNYVFCC  117 (247)
Q Consensus        49 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~  117 (247)
                      ..|++||..+.+....-.+-.+.|+++.|..+.+.++.|.      ....+..||.++... ..+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4589999877665554444556799999986666666553      345788899877653 22332     12556555


Q ss_pred             EEc-CCC-CEEEEee-CC--CCEEEEECCCCe
Q psy4393         118 NFN-PQS-NLIVSGS-FD--ESVRIWDVRTGK  144 (247)
Q Consensus       118 ~~~-~~~-~~l~~~~-~d--~~i~v~d~~~~~  144 (247)
                      .+. .++ ++.+.|. .+  ..|..||-....
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWS  126 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence            542 233 3444443 22  246677654443

>KOG2377|consensus

Probab=87.80  E-value=15  Score=30.82  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=76.5

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE---
Q psy4393          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL---  104 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---  104 (247)
                      +.+-|+-.++.| .|...|.+.-|......  ....+. ...++|.++.|++|.+.+++--.+..|.+++....+..   
T Consensus        26 ngvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            344454333433 34455666666553221  222221 23568999999999999999999999999987433221   


Q ss_pred             -EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393         105 -KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       105 -~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                       ..-+.....|....|... .-+|.....| +-+|-... .+.++..+.+...|.=-.|.++-+.+
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence             122334455888888876 4444444333 45554432 22233344455555555677766543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.75  E-value=14  Score=30.33  Aligned_cols=12  Identities=8%  Similarity=0.193  Sum_probs=8.4

Q ss_pred             eEEEEECCCceE
Q psy4393          92 TLKIWELSSGKC  103 (247)
Q Consensus        92 ~i~v~d~~~~~~  103 (247)
                      .+.+||..+..-
T Consensus       190 ~v~~YD~~t~~W  201 (376)
T PRK14131        190 EVLSYDPSTNQW  201 (376)
T ss_pred             eEEEEECCCCee
Confidence            478888877553

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.46  E-value=14  Score=29.89  Aligned_cols=12  Identities=17%  Similarity=0.326  Sum_probs=8.5

Q ss_pred             CeEEEEECCCce
Q psy4393          91 KTLKIWELSSGK  102 (247)
Q Consensus        91 ~~i~v~d~~~~~  102 (247)
                      ..+..||..+.+
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            457788887654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.35  E-value=14  Score=29.82  Aligned_cols=102  Identities=23%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE---EE----ecccCCeEEEEECCC----CCEEEEEcCC-------
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TI----SGHKLGISDVAWSSD----SRLLVSGSDD-------   90 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~---~~----~~~~~~v~~~~~~~~----~~~l~~~~~d-------   90 (247)
                      ...+++|.|+|+.+++ ...|.|++++ .++....   .+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999987765 6699999998 3444312   22    123456789999994    3333333311       


Q ss_pred             -CeEEEEECCCc--e-----EE-EEEec---CCccEEEEEEcCCCCEEEEeeCC
Q psy4393          91 -KTLKIWELSSG--K-----CL-KTLKG---HSNYVFCCNFNPQSNLIVSGSFD  132 (247)
Q Consensus        91 -~~i~v~d~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d  132 (247)
                       ..|.-|....+  .     .+ ..+..   ....-..+.|.|++.+.++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence             13333443322  1     11 11111   12234568999999777665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.85  E-value=18  Score=30.61  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEeec-----CCCCCeEEEEECCCC
Q psy4393         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTLP-----AHSDPVSAVHFNRDG  165 (247)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~-----~~~~~i~~~~~~~~~  165 (247)
                      -..-+.+.|.|++.++++-...|.|++++...+..  +..+.     ...+....|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34467889999998888766579999998655432  11111     124567889999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN02153 epithiospecifier protein

Probab=86.83  E-value=15  Score=29.66  Aligned_cols=54  Identities=17%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             CCEEEEECCCCeEEEeecC---C-CCCeEEEEECCCCCEEEEecCC--------------CeEEEEeCCCcee
Q psy4393         133 ESVRIWDVRTGKCLKTLPA---H-SDPVSAVHFNRDGSLIVSSSYD--------------GLCRIWDTASGQC  187 (247)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~d--------------g~i~v~d~~~~~~  187 (247)
                      ..+.+||+.+.+-...-..   . .....++. ..++.+++.|+..              ..+..||+.+.+.
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W  288 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW  288 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence            3588889876542211110   0 11111222 2246677777742              2577888876553

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.46  E-value=3.1  Score=21.46  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=22.7

Q ss_pred             CCCCEEEEEe-CCCeEEEEecCCCeEEEEEec
Q psy4393          37 PNGEWLASSS-ADKLIKIWGAYDGKFEKTISG   67 (247)
Q Consensus        37 ~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~   67 (247)
                      |++++|+++. .++.|.++|..++.....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5777776655 578999999887777666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.40  E-value=14  Score=29.00  Aligned_cols=146  Identities=19%  Similarity=0.308  Sum_probs=83.4

Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee------CCCCEEEEECCCCeEEEeecC-----CCCCeEE
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS------FDESVRIWDVRTGKCLKTLPA-----HSDPVSA  158 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~  158 (247)
                      ...|++||..+.+....-.+-.+.|..+.|..+.++++.|.      ....+..||..+.. ...+..     -.+++..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            45689999887765544444567799999987767777664      34568889987654 223332     2367777


Q ss_pred             EEECC-CCC-EEEEec-CCC--eEEEEeCCCceeeeeeccCCCCCeEEEEE--------------CCCCCEEEEEEc---
Q psy4393         159 VHFNR-DGS-LIVSSS-YDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--------------SPNGKYILAATL---  216 (247)
Q Consensus       159 ~~~~~-~~~-~l~~~~-~dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--------------s~~~~~l~~~~~---  216 (247)
                      +.+.. |+. +.++|. .+|  .+..||-.....+..-.......|..+.+              +.+.-+|++|..   
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l~~~  173 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSLNLP  173 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEeeEecC
Confidence            76632 333 444443 233  56677655443332201111223333322              223334555552   


Q ss_pred             C-C--eEEEEECCCcceEEEEcc
Q psy4393         217 D-N--TLKLWDSKVVTPAIICST  236 (247)
Q Consensus       217 d-g--~i~vwd~~~~~~~~~~~~  236 (247)
                      | |  ...+||.....|.+....
T Consensus       174 ~~G~~saalydG~~w~Py~~t~~  196 (281)
T PF12768_consen  174 DFGNASAALYDGTSWTPYLLTSS  196 (281)
T ss_pred             CCCcEEEEEECCCEEEEEEEEec
Confidence            2 4  678999999999887553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.03  E-value=7.1  Score=29.12  Aligned_cols=75  Identities=13%  Similarity=0.271  Sum_probs=0.0

Q ss_pred             EEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       136 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      ++++.-.......+.....|.   ++...| ..|+.+...+.|.+|++..........-.--+.|..+.++..|+||++
T Consensus         1 ~v~~~H~F~sQ~v~~~~~EP~---~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen    1 RVYNCHPFGSQNVVPCEQEPT---AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVT   76 (215)
T ss_pred             CeEEecccCCceeeccccCcc---eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEE

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.83  E-value=21  Score=30.47  Aligned_cols=138  Identities=18%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc---EEEEEEcCCCCE
Q psy4393          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY---VFCCNFNPQSNL  125 (247)
Q Consensus        49 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~  125 (247)
                      +...++|. +|.....+.........+...++|.+++...  ..+..+|+. |+.+.........   =..+...|+|++
T Consensus       128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~  203 (477)
T PF05935_consen  128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNL  203 (477)
T ss_dssp             EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred             ceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCE
Confidence            34445554 3444444433222222256778888776555  777788875 5544433322211   123566788998


Q ss_pred             EEEeeC-------------CCCEEEEECCCCeEEEeec--CC----C---------------------CCeEEEEECC-C
Q psy4393         126 IVSGSF-------------DESVRIWDVRTGKCLKTLP--AH----S---------------------DPVSAVHFNR-D  164 (247)
Q Consensus       126 l~~~~~-------------d~~i~v~d~~~~~~~~~~~--~~----~---------------------~~i~~~~~~~-~  164 (247)
                      |+.+..             ...|..+| .+|+.+..+.  .|    .                     --+.++.+.+ +
T Consensus       204 L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d  282 (477)
T PF05935_consen  204 LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD  282 (477)
T ss_dssp             EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred             EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence            887772             12355556 6666554421  00    0                     1267889988 5


Q ss_pred             CCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      +.+++++-....|...|.++++..-.+
T Consensus       283 d~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  283 DSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             TEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            555555544558888887777654333

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.53  E-value=16  Score=28.81  Aligned_cols=166  Identities=14%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             CeEEEEECCCCCEEEEEcCC------------CeEEEEECCCceEEEEEe------cCCccEEEEEEcCCCC------EE
Q psy4393          71 GISDVAWSSDSRLLVSGSDD------------KTLKIWELSSGKCLKTLK------GHSNYVFCCNFNPQSN------LI  126 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~------~l  126 (247)
                      .|..+...+.+.+-+.=+..            ..|.+||+.+.+.++.+.      ...+.+..+.+.....      ..
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE


Q ss_pred             EEeeCCCCEEEEECCCCeEEEeecCCCC-------------------CeEEEEECC---CCCEEEEecCCCeEEEEeCCC
Q psy4393         127 VSGSFDESVRIWDVRTGKCLKTLPAHSD-------------------PVSAVHFNR---DGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~-------------------~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ++-...+.|.++|+.+++..+.+..+..                   .+..++.+|   +++.|+-....+. ++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH


Q ss_pred             ceeeeeeccCCC-------------CCeEEEEECCCCCEEEEEEcCCeEEEEECCC----cceEEEEccC
Q psy4393         185 GQCLKTLIDDDN-------------PPVSFVKFSPNGKYILAATLDNTLKLWDSKV----VTPAIICSTP  237 (247)
Q Consensus       185 ~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~  237 (247)
                      .-....-.....             +....++++++|.++++--..+.|..|+.+.    .+..++.+.+
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~  230 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP  230 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.72  E-value=7.4  Score=24.40  Aligned_cols=27  Identities=22%  Similarity=0.552  Sum_probs=22.3

Q ss_pred             EEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         200 SFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      +.+.++|++++|+.++ ..+.|++|+.+
T Consensus        57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   57 NGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            5688999999998776 46899999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00564 PQQ beta-propeller repeat

Probab=83.95  E-value=3.4  Score=20.02  Aligned_cols=24  Identities=33%  Similarity=0.417  Sum_probs=19.4

Q ss_pred             EEEEeeCCCCEEEEECCCCeEEEe
Q psy4393         125 LIVSGSFDESVRIWDVRTGKCLKT  148 (247)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~~~~  148 (247)
                      .++.++.++.++.+|..+|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577778899999999988876554

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.46  E-value=35  Score=31.01  Aligned_cols=92  Identities=16%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             EEEEEcCCCCEEEEeeCCCC-----EEEEECCC---CeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         115 FCCNFNPQSNLIVSGSFDES-----VRIWDVRT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      ..++|-|+|..+++-+.||.     +.++.-+.   |+.-... .....+..++|+-....++. ...+.+.+|-..+..
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence            34789999999999775552     55554321   1110000 11223445566655544443 346678999776543


Q ss_pred             eeeeeccCCCCCeEEEEECCCCC
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      ..-.. ....+.+..+.|+|...
T Consensus       328 WYLK~-e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         328 WYLKV-ERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             EEEEE-eecCCCcceeeeccccC
Confidence            22111 11234567788998654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.30  E-value=22  Score=28.59  Aligned_cols=143  Identities=15%  Similarity=0.219  Sum_probs=80.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCe------EEEEecCC--C--eEE-----EEEecccC--------CeEEEEECCCCCE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKL------IKIWGAYD--G--KFE-----KTISGHKL--------GISDVAWSSDSRL   83 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~------v~iw~~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~~~   83 (247)
                      -+.++.+.+.+++..+++.+.+|.      +..+++..  +  ...     ..+....+        -..+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            477889999965555555566665      44444322  1  000     01111111        2336788778888


Q ss_pred             EEEEcCC------CeEEEEECCCceEEEEEe---------------cCCccEEEEEEcCCCCEEEEeeCC-----C--C-
Q psy4393          84 LVSGSDD------KTLKIWELSSGKCLKTLK---------------GHSNYVFCCNFNPQSNLIVSGSFD-----E--S-  134 (247)
Q Consensus        84 l~~~~~d------~~i~v~d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~d-----~--~-  134 (247)
                      +++.-.+      ..|..++.. +.....+.               ........++++|+|+.|+++.+.     +  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8877777      788888865 54433321               112346789999999966554332     2  1 


Q ss_pred             ------EEE--EECCC-CeE----EEeecC-----CCCCeEEEEECCCCCEEEE
Q psy4393         135 ------VRI--WDVRT-GKC----LKTLPA-----HSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       135 ------i~v--~d~~~-~~~----~~~~~~-----~~~~i~~~~~~~~~~~l~~  170 (247)
                            +++  ||..+ +..    ...+..     ....++.+.+.+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  444  45443 211    222222     3456788888899886653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=81.67  E-value=26  Score=28.27  Aligned_cols=100  Identities=21%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceE---EEEE----ecCCccEEEEEEcCC---CCEEEEeeC-C--------
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC---LKTL----KGHSNYVFCCNFNPQ---SNLIVSGSF-D--------  132 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d--------  132 (247)
                      .+.|+|.|+|+.+++ ...|.|++++ .++..   +..+    .........++++|+   ...++.... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            568999999887665 5699999999 44433   2222    122345688899984   233333222 1        


Q ss_pred             CCEEEEECCCC-------eEE-EeecC---CCCCeEEEEECCCCCEEEEecC
Q psy4393         133 ESVRIWDVRTG-------KCL-KTLPA---HSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       133 ~~i~v~d~~~~-------~~~-~~~~~---~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ..|.-|....+       +.+ .....   ....-..|.|.|||.++++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            12333333322       111 11222   2344577999999976666553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=80.69  E-value=5.9  Score=20.21  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             EEEEeeCCCCEEEEECCCCeEEEeecCC
Q psy4393         125 LIVSGSFDESVRIWDVRTGKCLKTLPAH  152 (247)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~  152 (247)
                      .++.++.+|.++-+|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3556688999999999999988776543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG3616|consensus

Probab=80.38  E-value=4.8  Score=35.83  Aligned_cols=69  Identities=19%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ...++++.-+|.+..++.+..||.+.+|+....+.-+..  ....|-..+.|...|  |++.++|.++.-|.-
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--EEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--hhcCCccceeeeccc--eEEEeccchhheeec
Confidence            345677888899999999999999999987654322211  112223445666655  777777888888854

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.17  E-value=12  Score=23.59  Aligned_cols=47  Identities=19%  Similarity=0.163  Sum_probs=27.8

Q ss_pred             CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEE
Q psy4393         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLK  221 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~  221 (247)
                      .+|.+.-||..+++....+ ..- .--+.+++++|+++|+.+-. -.+|.
T Consensus        35 ~~GRll~ydp~t~~~~vl~-~~L-~fpNGVals~d~~~vlv~Et~~~Ri~   82 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLL-DGL-YFPNGVALSPDESFVLVAETGRYRIL   82 (89)
T ss_dssp             --EEEEEEETTTTEEEEEE-EEE-SSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred             CCcCEEEEECCCCeEEEeh-hCC-CccCeEEEcCCCCEEEEEeccCceEE
Confidence            4577888999887643222 111 12367999999998877753 33443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-116
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-116
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-116
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-116
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-16
2h9l_A	329	Wdr5delta23 Length = 329		1e-116
2h9l_A	329	Wdr5delta23 Length = 329		5e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-116
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-116
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-116
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-116
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-116
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-115
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-115
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-115
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-115
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-115
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-115
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-114
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-37
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-34
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-31
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-30
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-25
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-19
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-25
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-24
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-24
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-22
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-22
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-21
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-21
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-21
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-20
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-20
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-20
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-20
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-19
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-18
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-18
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-18
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-18
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-18
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-18
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-18
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-18
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-18
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-16
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-16
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-14
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-12
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-14
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-12
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-13
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-13
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		6e-13
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		7e-13
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-13
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-11
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		8e-08
3mmy_A	368	Structural And Functional Analysis Of The Interacti		5e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-11
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		9e-11
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-07
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		6e-08
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		2e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		5e-07
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		7e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-06
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		2e-06
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-06
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		5e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-04
1s4u_X	407	Crystal Structure Analysis Of The Beta-Propeller Pr		3e-04
1sq9_A	397	Structure Of Ski8p, A Wd Repeat Protein Involved In		3e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		7e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 95  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 159 KTGKCLKTLPAH--SDPVSAVHFNRD 182

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 37  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 97  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWD 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 161 KTGKCLKTLPAH--SDPVSAVHFNRD 184

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 30  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 90  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWD 237

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 154 KTGKCLKTLPAH--SDPVSAVHFNRD 177

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 14  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 74  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWD 221

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 138 KTGKCLKTLPAH--SDPVSAVHFNRD 161

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 137 KTGKCLKTLPAH--SDPVSAVHFNRD 160

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 18  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 78  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWD 225

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 142 KTGKCLKTLPAH--SDPVSAVHFNRD 165

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 137 KTGKCLKTLPAH--SDPVSAVHFNRD 160

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/208 (96%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLA+SSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + + S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 140 KTGKCLKTLPAH--SDPVSAVHFNRD 163

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 143 KTGKCLKTLPAH--SDPVSAVHFNRD 166

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 12  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 72  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWD 219

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 136 KTGKCLKTLPAH--SDPVSAVHFNRD 159

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 9   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 69  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWD 216

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 133 KTGKCLKTLPAH--SDPVSAVHFNRD 156

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/208 (96%), Positives = 203/208 (97%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 140 KTGMCLKTLPAH--SDPVSAVHFNRD 163

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/208 (95%), Positives = 202/208 (97%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDN LKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWD 223

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL GH+  V    F+P    + S S D+ ++IW    GK  KT+  H   +S V ++ D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +L+VS+S D   +IWD +SG+CLKTL    N  V    F+P    I++ + D ++++WD 
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 226 KV-----VTPAIICSTPLNLNYFYRN 246
           K        PA   S P++  +F R+
Sbjct: 140 KTGMCLKTLPAH--SDPVSAVHFNRD 163

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           TL GH+ +V  V FSP+G+ +AS+S DK +K+W   +G+  +T++GH   +  VA+S D 
Sbjct: 93  TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
           + + S SDDKT+K+W   +G+ L+TL GHS+ V+   F+P    I S S D++V++W+ R
Sbjct: 152 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 209
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
            G+ L+TL  HS  V  V F+ DG  I S+S D   ++W+  +GQ L+TL    +  V+ 
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVNG 267
Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
           V F P+G+ I +A+ D T+KLW+
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWN 290

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           K+ L+GH   V+ V F P    + S+S D  IK+W    G FE+T+ GH   + D+++  
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
             +LL S S D T+K+W+    +C++T+ GH + V   +  P  + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
           V+TG C+KT   H + V  V  N+DG+LI S S D   R+W  A+ +C K  + +    V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVV 279
Query: 200 SFVKFSPN--------------------GKYILAATLDNTLKLWD 224
             + ++P                     G ++L+ + D T+K+WD
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           TL GHT  V  +        + S S D  +++W    G+    + GH   +  V +  D 
Sbjct: 194 TLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249
Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
           R +VSG+ D  +K+W+  +  CL TL+GH+N V+   F+     +VSGS D S+R+WDV 
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVE 307
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
           TG C+ TL  H    S +    +  ++VS + D   +IWD  +GQCL+TL   +    + 
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 202 VKFSPNGKYILAATLDNTLKLWDSK 226
                N  +++ ++ D T+KLWD K
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLWDLK 390

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 8/206 (3%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           L GH+  VS V  S NG +  S+S D  +++W   +G+ +    GH   +  VA+S D+R
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 138
            +VSG  D  L++W +  G+C+ TL    H+++V C  F+P   + +IVSG +D  V++W
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           D+ TG+ +  L  H++ V++V  + DGSL  SS  DG+ R+WD   G+ L  +      P
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA--AGAP 239
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           ++ + FSPN +Y + A  +  ++++D
Sbjct: 240 INQICFSPN-RYWMCAATEKGIRIFD 264

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 107 LKGHSNYV--FCCNFNPQS-NLIVSGSFDESVRIW----DVRTGKCLKTLP-----AHSD 154
           L GH  +V    C   P++   +VS S D+++  W    D  + +C   LP      HS 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 214
            VS V  + +G+  VS+S+D   R+W+  +GQC    +      +S V FSP+ + I++ 
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS-VAFSPDNRQIVSG 127
Query: 215 TLDNTLKLWDSK 226
             DN L++W+ K
Sbjct: 128 GRDNALRVWNVK 139

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 17/172 (9%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+  L GH  AV+ V F  + +++ S+S D+ IK+W     +F +T++GHK GI+ + + 
Sbjct: 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
              RL+VSGS D T+++W++  G CL+ L+GH   V C  F+ +   IVSG++D  +++W
Sbjct: 306 D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVW 361
Query: 139 DVRTG---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           D+             CL+TL  HS  V  + F  D   IVSSS+D    IWD
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           D + +VSG  D T+KIW+ ++ +C + L GH+  V C  ++ +  +I++GS D +VR+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 197
           V TG+ L TL  H + V  + FN    ++V+ S D    +WD AS     L+ ++     
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 198 PVSFVKFSPNGKYILAATLDNTLKLWDS 225
            V+ V F  + KYI++A+ D T+K+W++
Sbjct: 258 AVNVVDF--DDKYIVSASGDRTIKVWNT 283

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 26/235 (11%)
Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-S 79
             L GH + + S+ + P+G+ L S S D+ ++IW    G+   T+S    G++ VA S  
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPG 217
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLK-------GHSNYVFCCNFNPQSNLIVSGSFD 132
           D + + +GS D+ +++W+  +G  ++ L        GH + V+   F      +VSGS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 133 ESVRIWDVR------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
            SV++W+++            +G C  T   H D V +V   ++   I+S S D     W
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 181 DTASGQCLKTLIDDDNPPVSFV-----KFSPNGKYILAATLDNTLKLWDSKVVTP 230
           D  SG  L  L    N  +S          P        + D   ++W  K + P
Sbjct: 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           +  +  HT AV    FS +G+ +AS  ADK ++++ A  G+    I  H+  +   A+SS
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
           D   + + S DK +KIW+ ++GK + T   HS  V CC+F  +SN  L+ +GS D  +++
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
           WD+   +C  T+  H++ V+   F+ D  L+ S S DG  R+WD  S    K++      
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
           +  ++PP      V    +S +G  I+ A  +  L
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            ++ H++ V+   F+     I S   D++++++   TG+ L  + AH D V    F+ D 
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
           S I + S D   +IWD+A+G+ + T  D+ +  V+   F+    ++L AT  N   LKLW
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 224 D 224
           D
Sbjct: 729 D 729

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           +  +  HT AV    FS +G+ +AS  ADK ++++ A  G+    I  H+  +   A+SS
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
           D   + + S DK +KIW+ ++GK + T   HS  V CC+F  +SN  L+ +GS D  +++
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
           WD+   +C  T+  H++ V+   F+ D  L+ S S DG  R+WD  S    K++      
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
           +  ++PP      V    +S +G  I+ A  +  L
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            ++ H++ V+   F+     I S   D++++++   TG+ L  + AH D V    F+ D 
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
           S I + S D   +IWD+A+G+ + T  D+ +  V+   F+    ++L AT  N   LKLW
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 224 D 224
           D
Sbjct: 736 D 736

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 60/262 (22%)
Query: 18  VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWG------AYDGKFEKTISGHK 69
           VLK T+  HT  V+++  +P  N + + S+S DK I +W       AY G  ++ ++GH 
Sbjct: 373 VLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAY-GVAQRRLTGHS 430
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSS----------------------------- 100
             + DV  SSD +  +SGS D  L++W+L++                             
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 101 ------------GKCLKTL----KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRT 142
                       G+C  T+    +GH ++V C  F+P +    IVS S+D++V++W++  
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
            K   TL  H+  VS V  + DGSL  S   DG+  +WD A G+ L +L  + N  +  +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHAL 608
Query: 203 KFSPNGKYILAATLDNTLKLWD 224
            FSPN +Y L A  ++ +K+WD
Sbjct: 609 CFSPN-RYWLCAATEHGIKIWD 629

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 101 GKCLK-TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIW-----DVRTGKCLKTLPAH 152
           G  LK T++ H++ V      P  N  +IVS S D+S+ +W     D   G   + L  H
Sbjct: 371 GLVLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
           S  V  V  + DG   +S S+DG  R+WD A+G   +  +      +S V FS + + I+
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIV 488
Query: 213 AATLDNTLKLWDS 225
           +A+ D T+KLW++
Sbjct: 489 SASRDRTIKLWNT 501

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 72  LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            DS+ L +G+    + I+ + SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
           SDV  SSD +  +SGS D TL++W+L++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 150 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 207
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KT        ++ V  SP+G    +   D    LWD
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
           SDV  SSD +  +SGS D TL++W+L++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 127 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 184
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KT        ++ V  SP+G    +   D    LWD
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 2   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 59
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 60  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 179 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWG--AYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + +++ I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D   + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 18  VLKFTLAGHTKAVSSV------KFSPNGEWLASSSADKLIKIWGAYD----GKF---EKT 64
           V +  L GH+  V+S+      K + +   L S S DK + IW  Y+    G F    K 
Sbjct: 12  VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 65  ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
           ++GH   +SD+A S ++   +S S DKTL++W+L +G   K   GH + V+   F+P + 
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 125 LIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHF----------NRDGSLIVSS 171
            I+S   +  +++W++  G+C         HSD VS V +                  S 
Sbjct: 132 QILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            +DG  ++W+T     ++         V+ +  SPNGKYI     D  L +WD
Sbjct: 191 GWDGRLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 20  KFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           + TL GH T  ++ ++F  N  ++ + + DK+I+++ + + KF   +SGH  G+  + ++
Sbjct: 114 RTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDESVR 136
               +LVSGS D+T+++W++  G C    +GH++ V C +     N+  IV+GS D ++ 
Sbjct: 172 HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 137 IWDV-----------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
           +W +                            +  L  H   V  V  +  G+++VS SY
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           D    +WD A  +CL  L    +   S + +    K  ++A++D T+++WD
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWD 338

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKF--EKTISGHKLGISDVAWS 78
           H   V    F+PNG+ +A    D    I+        DG     + ++GHK   S   + 
Sbjct: 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 79  SDSRL-LVSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNP-QSNLIVSGSF 131
            D    L++GS D+T  +W++++G+ +         GH+  V   + N   +N+ +SGS 
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226
Query: 132 DESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
           D +VR+WD+R T + ++T   H   +++V F  DG    + S DG CR++D  +G  L+ 
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 191 L------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
                   D++ P V+ V FS +G+ + A   +    +WD+
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
           C +TL+GHS  V+  ++ P+ N IVS S D  + +W+  T +    +  H   V    F 
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-----------KFSPNGK-Y 210
            +G  +     D  C I++ +S         D N PVS V           ++ P+ +  
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-----QADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 211 ILAATLDNTLKLWD 224
           ++  + D T  LWD
Sbjct: 173 LITGSGDQTCVLWD 186

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           LAGHT  +S  +F  + + + +SS D    +W    G+   T +GH   +  ++ + D+R
Sbjct: 150 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
           L VSG+ D + K+W++  G C +T  GH + +    F P  N   +GS D + R++D+R 
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
            + L T  +H +    +++V F++ G L+++   D  C +WD         L   DN  V
Sbjct: 269 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 326
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +  + +G  +   + D+ LK+W+
Sbjct: 327 SCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           LAGHT  +S  +F  + + + +SS D    +W    G+   T +GH   +  ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
           L VSG+ D + K+W++  G C +T  GH + +    F P  N   +GS D + R++D+R 
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
            + L T  +H +    +++V F++ G L+++   D  C +WD         L   DN  V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +  + +G  +   + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           LAGHT  +S  +F  + + + +SS D    +W    G+   T +GH   +  ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
           L VSG+ D + K+W++  G C +T  GH + +    F P  N   +GS D + R++D+R 
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
            + L T  +H +    +++V F++ G L+++   D  C +WD         L   DN  V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +  + +G  +   + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           LAGHT  +S  +F  + + + +SS D    +W    G+   T +GH   +  ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
           L VSG+ D + K+W++  G C +T  GH + +    F P  N   +GS D + R++D+R 
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
            + L T  +H +    +++V F++ G L+++   D  C +WD         L   DN  V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +  + +G  +   + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           LAGHT  +S  +F  + + + +SS D    +W    G+   T +GH   +  ++ + D+R
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
           L VSG+ D + K+W++  G C +T  GH + +    F P  N   +GS D + R++D+R 
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 143 GKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
            + L T  +H +    +++V F++ G L+++   D  C +WD         L   DN  V
Sbjct: 258 DQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RV 315
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +  + +G  +   + D+ LK+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)
Query: 33  VKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSD 89
           + ++P G  LAS   D+ I+IWG   D    K++   GH+  +  VAWS     L S S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 90  DKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---K 144
           D T  IW+ +    +C+ TL+GH N V    + P  NL+ + S D+SV +W+V      +
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFV 202
           C+  L +H+  V  V ++    L+ S+SYD   +++        C  TL +     V  +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSL 200
Query: 203 KFSPNGKYILAATLDNTLKLW 223
            F P+G+ + + + D T+++W
Sbjct: 201 AFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 119 FNPQSNLIVSGSFDESVRIWDVRTGK--CLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDG 175
           +NP   L+ S   D  +RIW        C   L   H   V  V ++  G+ + S+S+D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 176 LCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
              IW       +C+ TL   +N  V  V ++P+G  +   + D ++ +W+
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENE-VKSVAWAPSGNLLATCSRDKSVWVWE 133

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--SDVAW 77
           K ++A HT  +S+  F+ +   + ++S D    +W    G+  ++  GH   +   D+A 
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
           S      VSG  DK   +W++ SG+C++  + H + V    + P  +   SGS D + R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 138 WDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           +D+R  + +      S     S+V F+  G L+ +   D    +WD   G  +  L   +
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLW 223
           N  VS ++ SP+G    + + D+TL++W
Sbjct: 327 N-RVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 31/230 (13%)
Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWS 78
             L+GH   V ++K++ +G  L S S D+ +++W    G       GH   +   D+   
Sbjct: 156 LQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLK-----------------------TLKGHSNYVF 115
            + + +V+GS D TL +W+L     +                         L+GH   V 
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175
             +     N++VSGS+D ++ +WDV   KCL  L  H+D + +  ++ +    +S+S D 
Sbjct: 275 TVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
             RIWD  +G+   TL       V  ++ S   K++++A  D +++ WD+
Sbjct: 333 TIRIWDLENGELXYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 379

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
           +K T +  +  V  + F P   W+ ++     +++W  Y+ + E ++I   +  +    +
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
            +    ++ GSDD  ++++  ++G+ +   + H +Y+     +P    ++SGS D +V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           W+      L +T   H   V  V FN +D S   S   D   ++W         TL    
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
              V++V +   P+  Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           +++W   +   +++++     V    F  + N I+ GS D  +R+++  TG+ +    AH
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D + ++  +     ++S S D   ++W+  +   L+   +     V  V F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
           A+  LD T+K+W     TP    +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
           +K T +  +  V  + F P   W+ ++     +++W  Y+ + E ++I   +  +    +
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
            +    ++ GSDD  ++++  ++G+ +   + H +Y+     +P    ++SGS D +V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           W+      L +T   H   V  V FN +D S   S   D   ++W         TL    
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
              V++V +   P+  Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           +++W   +   +++++     V    F  + N I+ GS D  +R+++  TG+ +    AH
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D + ++  +     ++S S D   ++W+  +   L+   +     V  V F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
           A+  LD T+K+W     TP    +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
           +K T +  +  V  + F P   W+ ++     +++W  Y+ + E ++I   +  +    +
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
            +    ++ GSDD  ++++  ++G+ +   + H +Y+     +P    ++SGS D +V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           W+      L +T   H   V  V FN +D S   S   D   ++W         TL    
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
              V++V +   P+  Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           +++W   +   +++++     V    F  + N I+ GS D  +R+++  TG+ +    AH
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D + ++  +     ++S S D   ++W+  +   L+   +     V  V F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
           A+  LD T+K+W     TP    +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWG---AYDGKFE----KTISGHKLGISDVAW 77
            H KA+ SV + P+   LA+ S D  + IW    + D  FE      I GH+  +  VAW
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 78  SSDSRLLVSGSDDKTLKIWELSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
           S+D   L + S DK++ IWE        +C+  L+ HS  V    ++P   L+ S S+D+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 134 SVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSL--IVSSSYDGLCRIW--------D 181
           +VRIW       +C+  L  H   V +  F++   +  + S S D   R+W        D
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS-----KVVTPAIICST 236
                C   L D     V  V +  NG  I +   D  L +++      KV     +C  
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294
Query: 237 PLNLN 241
              +N
Sbjct: 295 VYEIN 299

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW 77
           +K T +  +  V  + F P   W+ ++     ++IW  Y+ + E ++I   +  +    +
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWN-YETQVEVRSIQVTETPVRAGKF 63
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
            +    ++ GSDD  ++++  ++G+ +   + H +Y+     +P    ++SGS D +V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 138 WDVRTGKCL-KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           W+      L +T   H   V  V FN +D S   S   D   ++W         TL    
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 196 NPPVSFVKFS--PNGKYILAATLDNTLKLWDSK 226
              V++V +   P+  Y++ A+ D T+K+WD +
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           ++IW   +   +++++     V    F  + N I+ GS D  +R+++  TG+ +    AH
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D + ++  +     ++S S D   ++W+  +   L+   +     V  V F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 213 AAT-LDNTLKLWDSKVVTPAIICST 236
           A+  LD T+K+W     TP    +T
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTT 181

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 343
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
           T+SGH   +  + W+ D R L SG +D  + +W  + G+     L+T   H   V    +
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
            P QSN++ +G  + D  +RIW+V +G CL  + AHS   S +       LI    +   
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 344
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231
              IW   +   +  L    +  +S    SP+G  + +A  D TL+LW    + PA
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDPA 399

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 354
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
           T+SGH   +  + W+ D R L SG +D  + +W  + G+     L+T   H   V    +
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
            P QSN++ +G  + D  +RIW+V +G CL  + AHS   S +       LI    +   
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 355
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231
              IW   +   +  L    +  +S    SP+G  + +A  D TL+LW    + PA
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDPA 410

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 48  DKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK 105
           D  + +W A  G   + +   + G  IS VAW  +   L  G+    +++W++   K L+
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD 164
            +  HS  V   ++N  S ++ SGS    +   DVR  +  + TL  HS  V  + +  D
Sbjct: 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 165 GSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 217
           G  + S   D L  +W +A G+     L+T        V  V + P    +LA    T D
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSD 220
Query: 218 NTLKLWD 224
             +++W+
Sbjct: 221 RHIRIWN 227

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 65  ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFC 116
           + GH   + D+AW   +  ++ SGS+D T+ +WE+  G       + + TL+GH+  V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 117 CNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSY 173
             ++P + N+++S   D  + +WDV TG  + TL    H D + +V ++RDG+LI +S  
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 174 DGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATLDNTLKLWDS 225
           D   R+ +   G  +    + D P     PV  V F   GK +    +   +  + LWD+
Sbjct: 197 DKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAV-FVSEGKILTTGFSRMSERQVALWDT 252
Query: 226 K 226
           K
Sbjct: 253 K 253

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 59  GKFEKTIS---GHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG-------KCLKTL 107
           G+ +K +    GH   + D+AW   +  ++ SGS+D T+ +WE+  G       + + TL
Sbjct: 68  GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 108 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRD 164
           +GH+  V    ++P + N+++S   D  + +WDV TG  + TL    H D + +V ++RD
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATL 216
           G+LI +S  D   R+ +   G     + + D P     PV  V F   GK +    +   
Sbjct: 188 GALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEGTRPVHAV-FVSEGKILTTGFSRMS 243
Query: 217 DNTLKLWDSK 226
           +  + LWD+K
Sbjct: 244 ERQVALWDTK 253

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
            H   ++ +KF P+GE L SSS D  +KIW   DG   +T+ GH+  ++D+A     R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN------------------------FN 120
           +S S D T+++WE  +G  + T     N     N                        F 
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
                +++G     + + +V + +    LP+     S      DG   + I +   +G+ 
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 315
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL---WDSKVVTPAII 233
             WD  S +C +   + ++  P++ V F+  G   +++  D ++KL    D +   PAI 
Sbjct: 316 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKLDIISDPESERPAIE 374
Query: 234 CSTP 237
             TP
Sbjct: 375 FETP 378

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           Q    + G+ +  +++ D       +   AH   ++ + F   G  ++SSS D   +IW 
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN 241
              G   +TLI      V+ +     G+ +L+A+LD T++LW+         C T   ++
Sbjct: 168 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTTIH 217
Query: 242 YFYR 245
            F R
Sbjct: 218 TFNR 221

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
            H   ++ +KF P+GE L SSS D  +KIW   DG   +T+ GH+  ++D+A     R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN------------------------FN 120
           +S S D T+++WE  +G  + T     N     N                        F 
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
                +++G     + + +V + +    LP+     S      DG   + I +   +G+ 
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 312
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL---WDSKVVTPAII 233
             WD  S +C +   + ++  P++ V F+  G   +++  D ++KL    D +   PAI 
Sbjct: 313 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKLDIISDPESERPAIE 371
Query: 234 CSTP 237
             TP
Sbjct: 372 FETP 375

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           Q    + G+ +  +++ D       +   AH   ++ + F   G  ++SSS D   +IW 
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN 241
              G   +TLI      V+ +     G+ +L+A+LD T++LW+         C T   ++
Sbjct: 165 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTTIH 214
Query: 242 YFYR 245
            F R
Sbjct: 215 TFNR 218

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%)
Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRL 83
           H+   +  K SP+G + AS      ++IW         + TI      + D++W S+S+ 
Sbjct: 58  HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 84  L--VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 140
           +  V    ++   ++   +G     L G +  +   +F P     I+SGS D +V I++ 
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 200
              K   T   H+  V +V +N DGSL  S+  DG   +++   G       DD    V+
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 201 F------VKFSPNGKYILAATLDNTLKLWD 224
                  + +SP+G  I +A+ D T+K+W+
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWN 267

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 50/215 (23%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y L  TL GH + V  V    + + +AS S D  +++W   D      +   +  ++ V 
Sbjct: 8   YQLSATLKGHDQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC 66
Query: 77  WSSDSRLLVSGSDDKTLK---IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
           + S+  LL+ G  D  +    ++  S    L TL GH   V  C+ + Q  +++SGS+D+
Sbjct: 67  YDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDK 124
Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 193
           + ++W  + G  +  L AH+                         +WD            
Sbjct: 125 TAKVW--KEGSLVYNLQAHN-----------------------ASVWDA----------- 148
Query: 194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228
                   V FS N    L A+ D T+KLW +  V
Sbjct: 149 ------KVVSFSEN--KFLTASADKTIKLWQNDKV 175

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF-NPQ 122
           T+ GH+  +  +++     +++SGS DKT K+W+   G  +  L+ H+  V+     +  
Sbjct: 99  TLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154
Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
            N  ++ S D+++++W  +  K +KT    H+D V  +    DG  I S S DGL ++ D
Sbjct: 155 ENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVD 211
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
             +G  L+T  +     V  +K  PNG  I++   D T+++W
Sbjct: 212 XHTGDVLRTY-EGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 114 VFCCNFNPQS---NLIVSGSFDESVRIWDVR-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 168
           + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV  V ++ DGS +
Sbjct: 42  IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDSK 226
            ++S D   ++WD +S Q ++  I   + PV  + +  +PN   ++  + D TLK WD++
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 227 VVTPAIICSTP 237
              P ++   P
Sbjct: 160 SSNPMMVLQLP 170

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 12/226 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 80
           T+AGH   V  + +  N   L+S S    I          +  T+ GH   +  +AW SD
Sbjct: 171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 81  SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG--SFDESVRI 137
              L SG +D  ++IW+  S     T   H+  V    + P QSNL+ +G  + D+ +  
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWD-TASGQCLKTLIDDD 195
           W+  TG  + T+ A S   S +       ++ +  + D    IW  ++SG   +  I   
Sbjct: 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLW----DSKVVTPAIICSTP 237
           +  V +   SP+G+ +  A  D  LK W       V  P  I  TP
Sbjct: 349 DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTP 394

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 26  HTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWS 78
           H  +V +V++ P+   +  SSS DK +K+W     +      FE+T+  H +       S
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVS 153
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRI 137
           +   L+  G+    +++ +L SG C   L+GH   +   +++P+ + I+ + S D  V++
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 138 WDVRTGK-CLKTL---------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           WDVR    CL TL                AH+  V+ + F  DG  +++   D   R+W+
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Query: 182 TASGQ 186
           +++G+
Sbjct: 274 SSNGE 278

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 80
           L GH + ++ VK++  G+ L S S D    +W + +G+   T+ GH    +   WS D  
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH----TGTIWSIDVD 83
Query: 81  --SRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNF----------NPQS 123
             ++  V+GS D ++K+W++S+G+C+ T K         +  C N+          NP S
Sbjct: 84  CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
             I     D +       + + +  +  H   D  +   ++  G  I++   DG    +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            ++       ID     +S ++FSP+  Y + ++ D    L D
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/240 (17%), Positives = 94/240 (39%), Gaps = 22/240 (9%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           + L  +    T  V+ + +S +G  + +   +  +++W    G     ++ H+  I  V 
Sbjct: 98  FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVK 156
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---------------GHSNYVFCCNFNP 121
           W+ D   ++S   +    +W + SG  ++  +               G  +      +  
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
               ++ G    ++ ++ +        L  H  P+S + FN    L++S+S DG  RIW 
Sbjct: 217 DDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK---VVTPAIICSTPL 238
             +G             VS      +   +++ ++D +++LW  K   ++  +I+   P+
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 56/168 (33%)
Query: 111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
           +N V C  ++   N IV+G  +  +R+W+ +TG  L  L  H  P+ +V +N+DG+ I+S
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 171 SSYDGLCRIWDTASGQCLKTL---------------------------IDDD-------- 195
              + +  +W+  SG  ++                             +DDD        
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 196 --------------------NPPVSFVKFSPNGKYILAATLDNTLKLW 223
                               + P+S ++F+   K +L+A+ D TL++W
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 30  VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
           V  V+FSP+ GE++ +  +D+ I  +    G+F K I   +     GI  ++W    +  
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85  VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
             G+D  T+++W++++ KC+      K   G+         N +   I+S S D ++  +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
           ++   + LKT+  H+  ++A+  N     ++S SYDG    W ++S
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 30  VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
           V  V+FSP+ GE++ +  +D+ I  +    G+F K I   +     GI  ++W    +  
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85  VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
             G+D  T+++W++++ KC+      K   G+         N +   I+S S D ++  +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
           ++   + LKT+  H+  ++A+  N     ++S SYDG    W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 4/206 (1%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           +K  L     A  ++  SP+ +   S  +D  I +W  ++    +   GH  G S +  S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
           +D   L +G  D T++ W+L  G+ L+     ++ +F   + P    +  G    +V + 
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
            V      + L  H   V ++ F   G   VS+  D L   W T  G  +      ++  
Sbjct: 252 HVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSS 308
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           V     S + KYI+  + D    +++
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYE 334

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSN 124
           + G++DVAW S+  +LV+ SD   +++WE+   + L   K     H + V   +      
Sbjct: 94  EAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDT 182
             VSG  D SV++WD+     LK+  AHS  V+ V     +D ++ +S   DG   +WDT
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDT 211

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
             + +WD+ + G+   T  A   P             +S   +N +   I+ S S D + 
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
           ++W     Q  + + +D+ P +   +   N
Sbjct: 406 QVW-----QMAENVYNDEEPEIPASELETN 430

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
             + +WD+ + G+   T  A   P             +S   +N +   I+ S S D + 
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
           ++W     Q  + + +D+ P +   +   N
Sbjct: 404 QVW-----QMAENVYNDEEPEIPASELETN 428

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 71/230 (30%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVF- 115
           + GH+     ++W+S+ S  L+S SDD T+ +W++++G              GHS  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 116 ---------------------------------------------CCNFNPQSNLIV-SG 129
                                                        C +FNP S  I+ +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 130 SFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQ 186
           S D++V +WD+R  K  L T  +H D +  VH++  + +++ SS  D    +WD +  G+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 187 CLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
                  +D PP            +S   ++PN  +++ + + DN +++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 336 --PHPHRHFQHLTP 347

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 278 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 336
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 337 --PHPHRHFQHLTP 348

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 336 --PHPHRHFQHLTP 347

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 71/230 (30%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVF- 115
           + GH+     ++W+S+ S  L+S SDD T+ +W++++G              GHS  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 116 ---------------------------------------------CCNFNPQSNLIV-SG 129
                                                        C +FNP S  I+ +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 130 SFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQ 186
           S D++V +WD+R  K  L T  +H D +  VH++  + +++ SS  D    +WD +  G+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 187 CLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
                  +D PP            +S   ++PN  +++ + + DN  ++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 133 ESVRIWDV-RTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSS-SYDGLC 177
             + +WD+ + G+   T  A   P             +S   +N +   I+ S S D + 
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 178 RIWDTASGQCLKTLIDDDNP 197
           ++W     Q  + + +D+ P
Sbjct: 408 QVW-----QMAENVYNDEEP 422

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS----GKCL--KTL-KGHSNYVFC 116
           + GH+     ++W+ + S  L+S SDD T+ +W++S+    GK +  KT+  GH+  V  
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 117 CNFN-PQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS- 171
            +++    +L  S + D+ + IWD R   T K   ++ AH+  V+ + FN     I+++ 
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWD 224
           S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 72  ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGS 130
           +S V+  S     VSGS D  +K+W+L+    L + + H+  V C   +P  + + +S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 131 FDESVRIWDVRTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            D  + +WD R  K    +   +    P S     +   + V    +G   + DT S  C
Sbjct: 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249
Query: 188 -LKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKV 227
            L + +      V+ + FSP+    LA+ + D +L + DS +
Sbjct: 250 VLSSAVHSQC--VTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 94/246 (38%), Gaps = 36/246 (14%)
Query: 18  VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGIS 73
           +L   L GH   V  V ++    G  LAS S D+ + IW   +G +EK+   +GH   ++
Sbjct: 48  ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 74  DVAWSSDSR--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
            V W+      +L  GS D  + +   +     +  K ++ +   CN    +  +V GS 
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167
Query: 132 --------------------DESVRIWDVRTG---KCLKTLPAHSDPVSAVHF----NRD 164
                               D  +++W        K  + L AHSD V  V +       
Sbjct: 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227
Query: 165 GSLIVSSSYDGLCRIW---DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 221
            S I S S DG   IW   D +S      L+   N  V  V +S     +  +  DN + 
Sbjct: 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287
Query: 222 LWDSKV 227
           LW   V
Sbjct: 288 LWKESV 293

>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein Ski8p Length = 407

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIV----S 128
           S+  L+ +G ++ T++I ELS+ + L   +        SN +    F+PQ +L+     S
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
            SF   + +++   G+ + +L              AHS  V ++ FN  G  + S+ +DG
Sbjct: 265 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 323
Query: 176 LCRIWDTASGQCLKTL 191
             R WD  + + + TL
Sbjct: 324 KLRFWDVKTKERITTL 339

>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna Degradation And Meiotic Recombination Length = 397

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIV----S 128
           S+  L+ +G ++ T++I ELS+ + L   +        SN +    F+PQ +L+     S
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
            SF   + +++   G+ + +L              AHS  V ++ FN  G  + S+ +DG
Sbjct: 255 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313
Query: 176 LCRIWDTASGQCLKTL 191
             R WD  + + + TL
Sbjct: 314 KLRFWDVKTKERITTL 329

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 45  SSADKLIKIWGAYDGK--FEKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG 101
           S  D  I IW   +     +    GH+ GI  + W   D  LL+S   D T+ +W   S 
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295
Query: 102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRI 137
           + L       N+ F   F P++ +L    SFD  + +
Sbjct: 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRD-- 164
            H+  +     +     + + S D++++I++V   T K + TL  H  PV  V +     
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPN--GKYILAATLDNTLK 221
           G+++ S SYDG   IW   +G+  +  +    +  V+ V+++P+  G  +L A+ D  + 
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 222 LWDSK---VVTPAIICSTPLNLN 241
           + + K     +P II +  + +N
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVN 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.23
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.22
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.08
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.06
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.87
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.7
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.58
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.47
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.45
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.35
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.27
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.98
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.88
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.8
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.62
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.6
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.53
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.37
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.36
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.26
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.23
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.09
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.92
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.89
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.4
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.39
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.46
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.41
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.38
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.3
3ott_A	758	Two-component system sensor histidine kinase; beta	95.0
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.27
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.05
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.9
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.51
3ott_A	758	Two-component system sensor histidine kinase; beta	87.62
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.59
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	84.34
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.1
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.21
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	80.81
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	80.24

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.5e-41  Score=265.29  Aligned_cols=228  Identities=90%  Similarity=1.384  Sum_probs=213.3

Q ss_pred             CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      ..+|++.+.+++.+|.+.|.+++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+
T Consensus         8 ~~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A            8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             -CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence            45677889999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      .|++||+.+++.+..+.+|...+.++.|+|+++++++++.|+.|++||+++++.+..+..|..++.+++|+|++.+++++
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +.||.|++||+++++.+..+...+..++..++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence            99999999999999888777666777899999999999999999999999999999888777766544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-40  Score=261.22  Aligned_cols=223  Identities=20%  Similarity=0.398  Sum_probs=203.4

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      .+..++.+|.+.|.+++|+|++++|++++.||.|++||..++.....+..|..+|.+++|+|++++|++++.|+.|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            45677889999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  175 (247)
                      +.+++.+..+.+|...|.+++|+|++.++++|+.|+.|++||++++ .....+..|...|.+++|+| ++..|++|+.|+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999887 45567889999999999999 678999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      .|++||+++.+....+...+...+..+.|+|  ++++|++++.|+.|++||.+...++..+..+...
T Consensus       164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~  230 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN  230 (304)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence            9999999887766666656667788899986  7789999999999999999999888887776554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=253.02  Aligned_cols=220  Identities=29%  Similarity=0.473  Sum_probs=203.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.+|...|.+++|++++.++++++.|+.|++||..+++....+..+...+.+++|+|+++++++++.++.+++|++
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            44567899999999999999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      ++++....+..+...+.+++|+|+++++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence            99988888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +||+++++....+ ..+...|.+++|+|++++|++++.|+.|++||.++.+++..+..+..
T Consensus       232 iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~  291 (321)
T 3ow8_A          232 IYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD  291 (321)
T ss_dssp             EEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence            9999988776654 45567899999999999999999999999999999888877766544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-39  Score=263.00  Aligned_cols=221  Identities=33%  Similarity=0.624  Sum_probs=204.5

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ...+.+.+|..+|++++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            34566789999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      +.+++.+..+.+|...|.+++|+|++..+++|+.|+.|++||++++.++..+..|...+.++.++|++.++++|+.|+.|
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCC--------------------CCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN--------------------GKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ++||+.+++....+. .+...|.+++|+|+                    +.+|++|+.||.|++||.+...++..+..+
T Consensus       259 ~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          259 RVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            999999988766653 45678999999996                    678999999999999999998888777665


Q ss_pred             Cc
Q psy4393         238 LN  239 (247)
Q Consensus       238 ~~  239 (247)
                      ..
T Consensus       338 ~~  339 (410)
T 1vyh_C          338 DN  339 (410)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-37  Score=248.17  Aligned_cols=219  Identities=25%  Similarity=0.471  Sum_probs=198.6

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      +.....++.+|.+.|.+++|+|++++|++|+.||.|++||..++.....+..|...|.+++|+|+++++++++.|+.+++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34567788999999999999999999999999999999999999888889899999999999999999999999999999


Q ss_pred             EECCCc----eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          96 WELSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        96 ~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      |++.+.    .....+.+|...+.++.|++++. +++++.|+.|++||+++++.+..+..|.+.|.+++|+|++.++++|
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            999865    34566788999999999998764 8899999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      +.|+.|++||+++++....+. .+...|.+++|+|++++|++++.||.|++||.+...++..+..
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence            999999999999988776653 4567899999999999999999999999999998877666543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.1e-38  Score=251.89  Aligned_cols=210  Identities=20%  Similarity=0.274  Sum_probs=182.9

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKI   95 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v   95 (247)
                      ....+.+.+|.+.|++++|+|+|++|++|+.|+.|++||+.+++....+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus       117 ~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i  196 (344)
T 4gqb_B          117 IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL  196 (344)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccc
Confidence            334556678999999999999999999999999999999999999999999999999999999874 7899999999999


Q ss_pred             EECCCceEEEEEe--cCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEe
Q psy4393          96 WELSSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS  171 (247)
Q Consensus        96 ~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  171 (247)
                      ||+++++....+.  .+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|++++|+|++ .+|++|
T Consensus       197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             EETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             ccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence            9999988776664  34456889999984 5788999999999999999999999999999999999999998 578999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCc
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.|+.|++||+.+++...  ...|...|.+++|+|+++ +|++++.||+|++|+..+.
T Consensus       277 s~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          277 SEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             eCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999999999999887654  345677899999999987 5678999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-37  Score=245.57  Aligned_cols=221  Identities=29%  Similarity=0.487  Sum_probs=196.4

Q ss_pred             CceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCC-----CeEEEEEecccCCeEEEEECCCCCEEEEEcC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      .+.+..++.+|.+.|.+++|+|++ ++|++|+.|+.|++|+...     +.....+.+|...|.+++|+|+++++++++.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            466777889999999999999965 7999999999999999753     2345678899999999999999999999999


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC-----
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-----  164 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----  164 (247)
                      |+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++ ++.+..+..|...+.++.+.|.     
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999997 4567788899999999999985     


Q ss_pred             -CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         165 -GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       165 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                       +..+++++.|+.|++||+.+.+....+. .+...|.+++|+|++++|++++.||.|++||.+..+++..+..+.
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  238 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD  238 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence             4489999999999999999887666543 566789999999999999999999999999999988777765543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-38  Score=257.56  Aligned_cols=219  Identities=35%  Similarity=0.589  Sum_probs=202.4

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..++.+|.+.|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            34677899999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCC---------------
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD---------------  164 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------  164 (247)
                      ++.++..+.+|...+.++.++|++.++++++.|+.|++||+++++....+..|...|.+++|+|+               
T Consensus       223 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999996               


Q ss_pred             -----CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         165 -----GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       165 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                           +.+|++|+.|+.|++||+++++.+..+. .+...|.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~  381 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH  381 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence                 6789999999999999999998877664 4566899999999999999999999999999998887777666544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=247.38  Aligned_cols=206  Identities=30%  Similarity=0.480  Sum_probs=192.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+..|...+.+++|+|++++|++++.+|.+++|+..+++....+..+...+.+++|+|++++|++++.|+.|++||+
T Consensus       114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~  193 (321)
T 3ow8_A          114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI  193 (321)
T ss_dssp             EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            34456678889999999999999999999999999999999888888888888999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      .+++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus       194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +||+.+++.+..+. .+...|..++|+|++++|++++.||.|+|||.
T Consensus       274 iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          274 VWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            99999998877764 45678999999999999999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-37  Score=245.82  Aligned_cols=222  Identities=26%  Similarity=0.485  Sum_probs=194.6

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE---------------------------------
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---------------------------------   64 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~---------------------------------   64 (247)
                      ....++.+|.+.|.+++|+|++++|++|+.||.|++||..+++....                                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45677889999999999999999999999999999999765543322                                 


Q ss_pred             ---------------EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC--CCCEEE
Q psy4393          65 ---------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIV  127 (247)
Q Consensus        65 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~  127 (247)
                                     +..|...|.++.|+|++..+++++.|+.|++||+++++.+..+.+|...+.++.++|  +++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence                           234666788899999999999999999999999999999999999999999999987  568999


Q ss_pred             EeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-CCCCeEEEEECC
Q psy4393         128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSP  206 (247)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~  206 (247)
                      +|+.|+.|++||+++++++..+..|...|.+++|+|++.+|++++.|+.|++||++..+....+... ....+..++|+|
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999988766554332 234688999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         207 NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       207 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++++|++++.|+.|++||.....++..+..+..
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~  327 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN  327 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             CCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence            999999999999999999988887777666544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-37  Score=242.50  Aligned_cols=220  Identities=26%  Similarity=0.456  Sum_probs=194.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++..|..+|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc-eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEECC--CCCEEEEecC
Q psy4393          99 SSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNR--DGSLIVSSSY  173 (247)
Q Consensus        99 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~  173 (247)
                      +++ .....+.+|...|.+++|+| ++..+++|+.|+.|++||++.+.....+. .+...+..+.++|  ++.+|++++.
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            877 45567888999999999999 67899999999999999998776555443 4557889999986  6789999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      |+.|++||+++++.+..+. .+...|..++|+|++++|++++.||.|++||.++.+.+..+..+.+
T Consensus       207 D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~  271 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE  271 (304)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred             CCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence            9999999999998877664 4567899999999999999999999999999998887777665443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-36  Score=240.83  Aligned_cols=170  Identities=28%  Similarity=0.552  Sum_probs=157.0

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..++.+|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.+++++.|+.|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CceEEEEEecCCccEEEEEEcCC------CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                       ++.+..+.+|...+.++.+.|.      +..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.
T Consensus       138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC
Confidence             4567788889999999999984      458999999999999999999988889999999999999999999999999


Q ss_pred             CCeEEEEeCCCceeeee
Q psy4393         174 DGLCRIWDTASGQCLKT  190 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~  190 (247)
                      ||.|++||+.+++.+..
T Consensus       217 dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          217 DGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             TCEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCcEEEE
Confidence            99999999988765544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-36  Score=241.82  Aligned_cols=220  Identities=26%  Similarity=0.483  Sum_probs=197.0

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      ...+..|...|.+++|+|++++|++|+.|+.+++|+..+.    .....+.+|...|.++.|++++. +++++.|+.|++
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~  168 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEE
Confidence            4456789999999999999999999999999999998754    34566788999999999998765 889999999999


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      ||+.+++....+.+|...|.+++|+|++.++++|+.|+.|++||++++..+..+..|...|.+++|+|++.+|++|+.||
T Consensus       169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCceeeeeeccC-CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         176 LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      .|++||+++++.+..+... ....+.+++|+|++++|++|+.||.|++||.....++..+..+..+
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~  314 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc
Confidence            9999999988776655432 2347899999999999999999999999999988887777766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=246.02  Aligned_cols=211  Identities=28%  Similarity=0.527  Sum_probs=184.3

Q ss_pred             CceEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE---EecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          16 NYVLKFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        16 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      ......++.+|.. .|.+++|+|+|++|++|+.|+.|++|+...+.....   ..+|...|.+++|+|++++|++++.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3456677889988 999999999999999999999999999987754322   257888999999999999999999999


Q ss_pred             eEEEEECCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---EEEeecCCCCCeEEEEECCCCC
Q psy4393          92 TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus        92 ~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~  166 (247)
                      .+++||..++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||++.+.   .+..+..|...|.+++|+|++.
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999998776  4567788999999999999999999999999999999998763   4566788999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCceeee-eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +|++++.|+.|++||..+++... .....+...|..++|+|++++|++++.||+|+|||..
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            99999999999999998765332 2234567789999999999999999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-36  Score=240.33  Aligned_cols=211  Identities=30%  Similarity=0.507  Sum_probs=182.7

Q ss_pred             CCCceEEEEEecCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCC
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKF-----SP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD   80 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~   80 (247)
                      .++.....++.+|.+.|++++|     ++ ++++|++|+.|+.|++|+....       .....+.+|...|.+++|+|+
T Consensus         8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R            8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            3455667788999999999999     76 8999999999999999998643       345667889999999999999


Q ss_pred             CCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEE
Q psy4393          81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSA  158 (247)
Q Consensus        81 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~  158 (247)
                      +.++++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.........  ..|...+.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            999999999999999999999999999999999999999999999999999999999999854332221  267788999


Q ss_pred             EEECCCC----------CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         159 VHFNRDG----------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       159 ~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ++|+|++          .++++++.|+.|++||.. .+....+ ..+...|.+++|+|+|++|++++.||.|++||.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999987          789999999999999954 4434333 4556789999999999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=243.63  Aligned_cols=210  Identities=20%  Similarity=0.299  Sum_probs=178.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEE----EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      |...|.+++|+|++ .|++|+.||.|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            56789999999985 57789999999999998775433    34578999999999999999999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEEECCC-CCEEEEecCCCeE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRD-GSLIVSSSYDGLC  177 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i  177 (247)
                      +.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++....+.  .+...+.+++|+|+ +.+|++|+.||.|
T Consensus       160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v  239 (344)
T 4gqb_B          160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV  239 (344)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence            9999999999999999999987 578999999999999999998877664  44557899999985 5688999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++||+++++.+..+. .+...|.+++|+|++ ++|++|+.|++|+|||.+.++.+. ...+.
T Consensus       240 ~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~  299 (344)
T 4gqb_B          240 SLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHR  299 (344)
T ss_dssp             EEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCS
T ss_pred             EEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCC
Confidence            999999998877654 456789999999998 579999999999999998876543 34443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.9e-36  Score=240.25  Aligned_cols=204  Identities=25%  Similarity=0.465  Sum_probs=186.0

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEEE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d   97 (247)
                      ...+.+|...|.+++|+|++..|++++.|+.|++||+.+++....+.+|...|.+++|+|  +++.+++++.|+.|++||
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            345668999999999999999999999999999999999999999999999999999987  578999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +++++++..+..|...|.+++|+|++..+++++.|+.|++||++.++.+..+..+  ...+.+++|+|++.+|++|+.|+
T Consensus       227 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC
Confidence            9999999999999999999999999999999999999999999998877666533  34789999999999999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      .|++||+.+++.+..+ ..+...|.+++|+|+|++|++|+.||.|+||+
T Consensus       307 ~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          307 TINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999988876655 35667899999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.4e-37  Score=245.63  Aligned_cols=208  Identities=16%  Similarity=0.261  Sum_probs=183.8

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~   98 (247)
                      .+...+|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|++. .+++++.|+.|++||+
T Consensus       132 ~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred             eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence            345568999999999999999999999999999999999999999999999999999999875 7889999999999999


Q ss_pred             CCceEEEEEe--cCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEecCC
Q psy4393          99 SSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYD  174 (247)
Q Consensus        99 ~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  174 (247)
                      ++++....+.  .+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|++++|+|++ ++|++|+.|
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence            9887655443  45567899999997 5689999999999999999999999999999999999999987 578999999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +.|++||+.+++.+..+  .+...|++++|+| ++++|++++.||+|++||+....
T Consensus       292 ~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            99999999998876544  5667899999998 79999999999999999987643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.3e-37  Score=249.28  Aligned_cols=221  Identities=25%  Similarity=0.483  Sum_probs=193.5

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      ......++.+|.+.|++++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|+++++++++.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCce-------EEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEee-----cCCCCCeEEEEEC
Q psy4393          96 WELSSGK-------CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL-----PAHSDPVSAVHFN  162 (247)
Q Consensus        96 ~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~  162 (247)
                      ||+.+..       ....+.+|...+.++.|.|+ +..+++|+.|+.|++||+++++.+..+     ..|...+.+++++
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9986532       23456788888999999986 457999999999999999999887766     5688899999998


Q ss_pred             C-CCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         163 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       163 ~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      + ++.++++|+.|+.|++||++.. +.... ...+...|.+++|+|++++|++++.||+|++||.+...++.++..+
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence            7 7889999999999999999854 44433 4456678999999999999999999999999999998887776554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8e-36  Score=254.90  Aligned_cols=215  Identities=24%  Similarity=0.403  Sum_probs=189.3

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEECCCCCEEEEEcCC----CeE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTL   93 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i   93 (247)
                      ...+.+|...|++++|+|+|++||+|+.||.|++||..++  .....+.+|..+|.+++|+|+++.|++++.+    +.|
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            3456789999999999999999999999999999998643  3455678899999999999999999988765    367


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ++||  .++....+.+|...|.+++|+|++. .+++++.|+.+++||.++++....+..|...|.+++|+|++++|++++
T Consensus       132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            7777  4555667889999999999999986 699999999999999999988889999999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         173 YDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      .|+.|++||+.+++....+..      .+...|.+++|+|++++|++++.|++|++||.++.+.+..+..
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence            999999999999887766533      5677899999999999999999999999999998877666543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-35  Score=237.90  Aligned_cols=210  Identities=33%  Similarity=0.578  Sum_probs=184.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..|.+++|+|+|++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999988899999999999999999999999999999999999999887766


Q ss_pred             ecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEee-------cCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         108 KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL-------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       108 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      . +...+.+++++| ++.++++++.|+.|++||++++..+..+       ..|...|.+++|+|++.+|++|+.|+.|++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            6 455688999999 8999999999999999999998877665       568889999999999999999999999999


Q ss_pred             EeCCCcee------------eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         180 WDTASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       180 ~d~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ||+++...            ... ...+...|.+++|+|++++|++++.||.|++||.+++.++..+..+..
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             EEC---------------CEEEE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCCCCcccccCCCCCcceEE-EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence            99976432            222 234556789999999999999999999999999999998888776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-34  Score=228.21  Aligned_cols=221  Identities=36%  Similarity=0.622  Sum_probs=194.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||..+++....+.+|...|.++.|+|+++++++++.|+.|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  136 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  136 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ++++.+..+..|...+.++.|+|+++++++++.|+.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
T 4ery_A          137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  216 (312)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred             CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence            9999988999999999999999999999999999999999999988777654 455689999999999999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCC--CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         178 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++||+++++.+..+..+...  .+......+++++|++|+.||.|++||.+..+.+..+..+.+
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~  280 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD  280 (312)
T ss_dssp             EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC
Confidence            99999999877766443321  222333457889999999999999999999888877776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.3e-36  Score=233.65  Aligned_cols=207  Identities=23%  Similarity=0.360  Sum_probs=178.5

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~   96 (247)
                      ..+.+|.+.|.+++|+|+|++|++|+.|+.|++|+...  .+....+.+|..+|.+++|+|+  +++|++++.|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            34678999999999999999999999999999999864  3566788899999999999874  8999999999999999


Q ss_pred             ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE--EEeecCCCCCeEEEEECCC------
Q psy4393          97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRD------  164 (247)
Q Consensus        97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~------  164 (247)
                      |+++++  .+..+..|...|.+++|+|+  +.++++++.|+.|++||++.+..  ...+..|...+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764  45567788899999999997  88999999999999999987632  3456788999999999997      


Q ss_pred             -------CCEEEEecCCCeEEEEeCCCce----eeeeeccCCCCCeEEEEECCCC---CEEEEEEcCCeEEEEECCCc
Q psy4393         165 -------GSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG---KYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       165 -------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~  228 (247)
                             +++|++|+.|+.|++||+++++    .... +..+...|.+++|+|++   ++|++++.|++|+|||.+..
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                   4689999999999999997754    2223 34567789999999995   89999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-35  Score=232.83  Aligned_cols=204  Identities=30%  Similarity=0.501  Sum_probs=172.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-------CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      +|...|.+++|+|++++|++|+.|+.|++|+...       ......+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999843       345567788999999999999999999999999999999


Q ss_pred             CCC----ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC--eEEEeecCCCCCeEEEEECCC--CCEEE
Q psy4393          98 LSS----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRD--GSLIV  169 (247)
Q Consensus        98 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~  169 (247)
                      +..    .+.+..+.+|...|.++.|+|++.+|++++.|+.|++||.+.+  +++..+..|...|.+++|+|+  +..|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            943    2456778899999999999999999999999999999999876  567888999999999999998  67899


Q ss_pred             EecCCCeEEEEeCCCc--------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         170 SSSYDGLCRIWDTASG--------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +++.|+.|++||+..+        .....+...+...|..++|++++ +|++++.||.|+|||...+.
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            9999999999998754        22333333366789999999765 89999999999999987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-35  Score=232.79  Aligned_cols=226  Identities=22%  Similarity=0.375  Sum_probs=197.7

Q ss_pred             CCCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          11 SNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        11 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ............+.+|.+.|++++|+|++++|++++.||.|++||..+++....+.+|...|.+++|+|++++|++++.|
T Consensus        16 ~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            34444567778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCe-----------EEEeecCCCC
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGK-----------CLKTLPAHSD  154 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~-----------~~~~~~~~~~  154 (247)
                      +.|++||+.+++....+. +...+.++.|+|++..+++++.+     +.+++||++.+.           .+..+..+..
T Consensus        96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999998888777 77889999999999999999998     999999997653           2333445555


Q ss_pred             --CeEEEEECCCCCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         155 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       155 --~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                        .+.+++|+|+++++++++.||.|.+||+++ .+....+ ..+...+.+++|+|++++|++++.||.|++||.++..++
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence              899999999999999999999999999998 5554444 445678999999999999999999999999999998877


Q ss_pred             EEEccCC
Q psy4393         232 IICSTPL  238 (247)
Q Consensus       232 ~~~~~~~  238 (247)
                      ..+..+.
T Consensus       254 ~~~~~~~  260 (369)
T 3zwl_B          254 KKYETDC  260 (369)
T ss_dssp             EEEECSS
T ss_pred             eeecCCC
Confidence            7665433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-35  Score=231.65  Aligned_cols=208  Identities=27%  Similarity=0.424  Sum_probs=174.5

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEE-ec-ccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTI-SG-HKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      ....++.+|.++|.+++|+|+  +|++|+.|+.|++|+...+  .....+ .+ |...|.+++|+|++++|++++.|+.|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            345678899999999999987  8999999999999999764  334445 34 88899999999999999999999999


Q ss_pred             EEEECCC-------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC----CeEEEeecCCCCCeEEEEEC
Q psy4393          94 KIWELSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----GKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        94 ~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~  162 (247)
                      ++||+..       .+....+.+|...|.+++|+|++++|++++.|+.|++||++.    .+.+..+..|...|.+++|+
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            9999853       345667888999999999999999999999999999999943    24567788999999999999


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCc--eeeeeeccCCCCCeEEEEECCC--CCEEEEEEcCCeEEEEECCCc
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      |++.+|++++.|+.|++||..++  +.+.. ...+...|.+++|+|+  +.+|++++.|++|++||.+..
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEE-ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            99999999999999999998765  33443 3456678999999999  778999999999999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-35  Score=234.59  Aligned_cols=212  Identities=24%  Similarity=0.375  Sum_probs=182.0

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLK   94 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   94 (247)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|+..++    .....+.+|...|.+++|+|  ++++|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            345689999999999999999999999999999999765    45566788999999999999  699999999999999


Q ss_pred             EEECCCc---------eEEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE------------------
Q psy4393          95 IWELSSG---------KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC------------------  145 (247)
Q Consensus        95 v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~------------------  145 (247)
                      +||+.++         +....+..|...+.+++|+|+  +.++++++.|+.|++||+++++.                  
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         556778889999999999999  99999999999999999875431                  


Q ss_pred             ------------------------------------------EEeecCCCCCeEEEEECCCC----CEEEEecCCCeEEE
Q psy4393         146 ------------------------------------------LKTLPAHSDPVSAVHFNRDG----SLIVSSSYDGLCRI  179 (247)
Q Consensus       146 ------------------------------------------~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v  179 (247)
                                                                +..+..|...|.+++|+|++    .+|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                      33455788899999999998    89999999999999


Q ss_pred             EeCCCc----------------------------------------------eeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         180 WDTASG----------------------------------------------QCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       180 ~d~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      ||++.+                                              +.+.. ...+...|.+++|+|++++|++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE-HDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEE-ECTTSSCEEEEEECSSSCCEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-EecccccEEEEEEcCCCCEEEE
Confidence            998764                                              22222 2345678999999999999999


Q ss_pred             EEcCCeEEEEECCCcceEEE
Q psy4393         214 ATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       214 ~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ++.||.|++||....+.+..
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEE
T ss_pred             ecCCCcEEEEecCcCcchhh
Confidence            99999999999987754433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-34  Score=235.38  Aligned_cols=202  Identities=34%  Similarity=0.655  Sum_probs=177.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc------------------CCeEEEEECCCCCEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK------------------LGISDVAWSSDSRLLVS   86 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~   86 (247)
                      +|.+.|.+++|+|+|++|++++ ++.+++|+..+++....+..+.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999876 7899999999888776665432                  23899999999999999


Q ss_pred             EcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CC
Q psy4393          87 GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DG  165 (247)
Q Consensus        87 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~  165 (247)
                      ++.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.|+.|++||+++++....+. +...+.+++++| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999989999999999999999999999999999999999999998877765 456799999999 89


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeec------cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .++++|+.|+.|++||+++++....+.      ..+...|.+++|+|++++|++++.||.|++||.+..
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999999999887665542      345678999999999999999999999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=232.12  Aligned_cols=204  Identities=27%  Similarity=0.511  Sum_probs=178.4

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .+|...|.+++|+|++++|++|+.|+.+++|+...+.  ....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            5799999999999999999999999999999987653  45678889999999999999999999999999999999865


Q ss_pred             e---EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393         102 K---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus       102 ~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      .   .+..+..|...|.+++|+|++.++++++.|+.|++||++.++  ....+..|...|.+++|+|++++|++++.|+.
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            3   456677889999999999999999999999999999998875  34678899999999999999999999999999


Q ss_pred             EEEEeCCCc---------------eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         177 CRIWDTASG---------------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       177 i~v~d~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      |++||....               +++..+...+...|..++|+|++..|++++.|+.|++|+.+.
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            999996322               122233334667899999999999999999999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.5e-35  Score=227.92  Aligned_cols=208  Identities=27%  Similarity=0.397  Sum_probs=176.9

Q ss_pred             EEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCCeE
Q psy4393          20 KFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTL   93 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i   93 (247)
                      ..++.+|.++|.+++|+|+  +++|++|+.|+.|++||..++.  ....+..|...|.+++|+|+  +.+|++++.|+.|
T Consensus        46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v  125 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV  125 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcE
Confidence            4567899999999999874  8999999999999999998764  44566778889999999997  8899999999999


Q ss_pred             EEEECCCce--EEEEEecCCccEEEEEEcCC-------------CCEEEEeeCCCCEEEEECCCCe----EEEeecCCCC
Q psy4393          94 KIWELSSGK--CLKTLKGHSNYVFCCNFNPQ-------------SNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSD  154 (247)
Q Consensus        94 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~  154 (247)
                      ++||++++.  ....+.+|...+.+++|+|+             +.+|++|+.|+.|++||+++++    ....+..|..
T Consensus       126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~  205 (297)
T 2pm7_B          126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (297)
T ss_dssp             EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence            999998753  23456788899999999996             5799999999999999998765    5567889999


Q ss_pred             CeEEEEECCCC---CEEEEecCCCeEEEEeCCCce--eeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         155 PVSAVHFNRDG---SLIVSSSYDGLCRIWDTASGQ--CLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       155 ~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~--~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .|.+++|+|++   .+|++++.|+.|++||+.+.+  ......  ..+...+..++|+|++++|++++.||.|+||+.+.
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            99999999985   799999999999999987643  112222  33456799999999999999999999999999763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-35  Score=239.83  Aligned_cols=210  Identities=26%  Similarity=0.492  Sum_probs=184.2

Q ss_pred             EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEE-----ecccCCeEEEEECC-CCCEEEEEcCCCeE
Q psy4393          21 FTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSS-DSRLLVSGSDDKTL   93 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i   93 (247)
                      ..+.+|.+.|.++.|+|++ ..|++|+.|+.|++||+.+++....+     .+|...|.++.|++ +++.+++++.|+.|
T Consensus       151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v  230 (380)
T 3iz6_a          151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV  230 (380)
T ss_dssp             CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred             eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence            3467899999999999974 57999999999999999998887776     56788899999987 78999999999999


Q ss_pred             EEEECC-CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-------CCeEEEEECCCC
Q psy4393          94 KIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------DPVSAVHFNRDG  165 (247)
Q Consensus        94 ~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~  165 (247)
                      ++||++ .+..+..+.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+.       ..+.+++|+|++
T Consensus       231 ~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             EEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             EEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence            999997 456777888999999999999999999999999999999999998887765432       247899999999


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeec---cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++|++|+.||.|++||+..++....+.   ..+...|.+++|+|+|++|++|+.||+|+||+......
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            999999999999999998887665542   45677899999999999999999999999999876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.5e-34  Score=248.09  Aligned_cols=220  Identities=29%  Similarity=0.449  Sum_probs=191.9

Q ss_pred             ceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCC-----CeEEEEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ..+...+.+|.+.|++++|+|++ ++|++|+.|+.|++|+...     +.....+.+|...|.+++|+|++++|++++.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            34556788999999999999875 6899999999999999864     23456788999999999999999999999999


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee---cCCCCCeEEEEECCCC--
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRDG--  165 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~--  165 (247)
                      +.|++||+.++.....+.+|...|.+++|+|++..+++++.|+.|++||+.........   ..|...|.+++|+|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            99999999999999999999999999999999999999999999999998765443322   4677889999999987  


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ..+++++.|+.|++||+++++....+ ..+...|.+++|+|++++|++++.||.|++||.+...++..+..+
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~  602 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN  602 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Confidence            58999999999999999988776654 456678999999999999999999999999999988776554443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-34  Score=233.36  Aligned_cols=200  Identities=16%  Similarity=0.226  Sum_probs=170.5

Q ss_pred             CCCeEEEEECCCCCEEEEE--eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          27 TKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ...+.+++|+|||++++++  +.|+.|++||..+++....+. |...|.+++|+|+|+++++++.++ +.+|+..+++..
T Consensus       133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~  210 (365)
T 4h5i_A          133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCI  210 (365)
T ss_dssp             TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEE
T ss_pred             ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcce
Confidence            3458899999999998654  478999999999998887775 667899999999999999998655 556776666654


Q ss_pred             E--EEecCCccEEEEEEcCCCCEEEEeeCCC----CEEEEECCCCeE----EEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393         105 K--TLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       105 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      .  ....|...+.+++|+|++..+++++.++    .+++||+.....    ...+..|..+|++++|+|+|++||+|+.|
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence            3  3345778899999999999999998877    588899877653    34567888999999999999999999999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.|++||+.+++.+..+...|..+|++++|+|||++|++++.|++|+|||+...
T Consensus       291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999888877778889999999999999999999999999998543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.4e-34  Score=226.55  Aligned_cols=207  Identities=22%  Similarity=0.414  Sum_probs=177.2

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|...|.+++|+|++.++++|+.|+.|++||..+++....+.+|...|.+++|+|+++.|++++.|+.|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            34567899999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             CCceEEEEEe---cCCccEEEEEEcCCC----------CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393          99 SSGKCLKTLK---GHSNYVFCCNFNPQS----------NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus        99 ~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      .... .....   .|...+.++.|+|++          .++++++.|+.|++||. ..+....+..|...|.+++|+|++
T Consensus       148 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          148 LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred             cCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCC
Confidence            7433 33332   577889999999986          78999999999999994 566777888999999999999999


Q ss_pred             CEEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         166 SLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ++|++|+.||.|++||+... .....+.  ....|..++|+|++++++++ .|+.|++||..+...
T Consensus       226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          226 KYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK  288 (343)
T ss_dssp             SEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCS
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCC
Confidence            99999999999999999543 3333221  23469999999999887654 588999999877654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-34  Score=243.28  Aligned_cols=201  Identities=42%  Similarity=0.717  Sum_probs=182.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.+|...|.+++|+|+|++|++++.|+.|++|+. +++....+.+|...|.+++|+|+++++++++.|+.|++||.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR  455 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            34566789999999999999999999999999999995 56777888899999999999999999999999999999996


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                       +++.+..+.+|...+.+++|+|+++++++++.|+.|++||. +++.+..+..|...|++++|+|++++|++++.||.|+
T Consensus       456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~  533 (577)
T 2ymu_A          456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  533 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence             46777888999999999999999999999999999999995 6778889999999999999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +||. +++.+..+. .+...|..++|+|||++|++++.|+.|++||
T Consensus       534 lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          534 LWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9996 456665543 5667899999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-34  Score=246.64  Aligned_cols=212  Identities=23%  Similarity=0.381  Sum_probs=186.1

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTL   93 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i   93 (247)
                      ...++.+|.++|.+++|+|+|++|++++.+    +.|++||.  +.....+.+|...|.+++|+|++. .+++++.|+.|
T Consensus        95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A           95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence            455678899999999999999999988765    47888874  445556788999999999999986 69999999999


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-------CCCCCeEEEEECCCCC
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-------AHSDPVSAVHFNRDGS  166 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~  166 (247)
                      ++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+.+++.+..+.       .|.+.|.+++|+|+++
T Consensus       173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence            999999998888999999999999999999999999999999999999998887774       6899999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeee------------------------------------------ccCCCCCeEEEEE
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTL------------------------------------------IDDDNPPVSFVKF  204 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------------------~~~~~~~v~~~~~  204 (247)
                      +|++++.|+.|++||+.+++....+                                          ...+...|.+++|
T Consensus       253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~  332 (611)
T 1nr0_A          253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS  332 (611)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence            9999999999999999987654432                                          1245667999999


Q ss_pred             CCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         205 SPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       205 s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      +|+|++|++++.|++|++||..+.....
T Consensus       333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          333 SADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eCCCCEEEEEeCCCcEEEEECCCCceee
Confidence            9999999999999999999998765543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-33  Score=222.02  Aligned_cols=224  Identities=28%  Similarity=0.444  Sum_probs=194.1

Q ss_pred             CCceEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCe-----EEEEEecccCCeEEEEECCCCCEEEEEc
Q psy4393          15 PNYVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSRLLVSGS   88 (247)
Q Consensus        15 ~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~   88 (247)
                      .+..++.+|.+|.+.|++++|+|+ +++|++|+.|+.|++||+...+     ....+.+|...|.+++|+|+++++++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            345667789999999999999997 6899999999999999986532     4556788999999999999999999999


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-EeecCCCCCeEEEEECCCC--
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNRDG--  165 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--  165 (247)
                      .|+.|++|+............+...+....+++++..+++++.|+.+++||+...... .....|...+..++|++++  
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            9999999999998888888888888889999999999999999999999999876543 3456788899999998865  


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      .++++++.|+.|++||+++++....+. .+..+|.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  258 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI  258 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence            578899999999999999988776654 4567899999999999999999999999999999888777665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.4e-35  Score=231.80  Aligned_cols=210  Identities=27%  Similarity=0.386  Sum_probs=175.8

Q ss_pred             EEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCCe
Q psy4393          19 LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKT   92 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~   92 (247)
                      ...++.+|.+.|.+++|+|  ++++|++|+.|+.|++||..++.  ....+.+|...|.+++|+|+  +.+|++++.|+.
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            3456789999999999986  48999999999999999998763  45567789999999999997  789999999999


Q ss_pred             EEEEECCCceE---EEEEecCCccEEEEEEcCC-----------------CCEEEEeeCCCCEEEEECCCC---eEEEee
Q psy4393          93 LKIWELSSGKC---LKTLKGHSNYVFCCNFNPQ-----------------SNLIVSGSFDESVRIWDVRTG---KCLKTL  149 (247)
Q Consensus        93 i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~v~d~~~~---~~~~~~  149 (247)
                      |++||++++..   ...+.+|...+.++.|+|+                 +.++++|+.|+.|++||++.+   +.+..+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999987532   2344567788889999987                 468999999999999999755   456778


Q ss_pred             cCCCCCeEEEEECCCC----CEEEEecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393         150 PAHSDPVSAVHFNRDG----SLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (247)
Q Consensus       150 ~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  222 (247)
                      ..|...|.+++|+|++    .+|++++.|+.|++||+.+.   +........+...|..++|+|++++|++++.||.|++
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l  288 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL  288 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            8999999999999986    78999999999999998762   1111222334678999999999999999999999999


Q ss_pred             EECCCc
Q psy4393         223 WDSKVV  228 (247)
Q Consensus       223 wd~~~~  228 (247)
                      |+....
T Consensus       289 w~~~~~  294 (316)
T 3bg1_A          289 WKESVD  294 (316)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.3e-35  Score=233.67  Aligned_cols=210  Identities=18%  Similarity=0.243  Sum_probs=175.3

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEE----EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ..+|...|.+++|+|++.++ +++.||.|++||+.+++..    ....+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34688999999999998755 5678999999999776543    234478889999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCC-CEEEEecCC
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDG-SLIVSSSYD  174 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~d  174 (247)
                      ++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+  ..+...+.+++|+|++ .+|++|+.|
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            99999999999999999999999874 7899999999999999988776554  3566789999999974 688999999


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      +.|++||+++++....+. .+...|.+++|+|++ ++|++++.||+|+|||.++.+.+...
T Consensus       249 ~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             SCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            999999999988776654 455689999999987 57899999999999999988776554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-35  Score=232.70  Aligned_cols=206  Identities=21%  Similarity=0.331  Sum_probs=171.8

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~   96 (247)
                      ..+.+|.+.|.+++|+|+|++|++|+.|+.|++||..++.  ....+.+|...|.+++|+|  ++++|++++.|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3456899999999999999999999999999999998764  3567889999999999986  48899999999999999


Q ss_pred             ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCeE---EEeecCCCCCeEEEEECCC-----
Q psy4393          97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSAVHFNRD-----  164 (247)
Q Consensus        97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~-----  164 (247)
                      |++++.  ....+.+|...|.+++|+|+  +.++++++.|+.|++||++.+..   ...+..|...+.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            998863  55667789999999999997  78999999999999999987632   3445678888999999997     


Q ss_pred             ------------CCEEEEecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCC----CEEEEEEcCCeEEEEEC
Q psy4393         165 ------------GSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDS  225 (247)
Q Consensus       165 ------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~  225 (247)
                                  +.+|++|+.|+.|++||++..   +.... +..+...|.+++|+|++    ++|++++.||+|++||.
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                        468999999999999999754   23333 34566789999999987    89999999999999998


Q ss_pred             CC
Q psy4393         226 KV  227 (247)
Q Consensus       226 ~~  227 (247)
                      +.
T Consensus       246 ~~  247 (316)
T 3bg1_A          246 DD  247 (316)
T ss_dssp             SS
T ss_pred             cC
Confidence            76

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-34  Score=230.32  Aligned_cols=216  Identities=17%  Similarity=0.292  Sum_probs=187.3

Q ss_pred             CceEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECC-CCCEEEEEcCCC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSS-DSRLLVSGSDDK   91 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~   91 (247)
                      .+....++.+|...|.+++|+|++ ++|++|+.||.|++|+..++.....+.  +|...|.+++|+| +++.+++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345566788999999999999999 899999999999999998877766665  5889999999999 779999999999


Q ss_pred             eEEEEECCCceEEEEEecC---CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-E
Q psy4393          92 TLKIWELSSGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-L  167 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  167 (247)
                      .|++||+.+ .....+..+   ...+.+++|+|++.++++++.|+.|++||+ .++.+..+..|...|.+++|+|++. +
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999986 444555443   377999999999999999999999999999 4677888889999999999999999 9


Q ss_pred             EEEecCCCeEEEEeCCC----ceeeeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         168 IVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +++++.|+.|++||+++    +.....+  .+...+.+++|+| ++++|++++.||.|++||.++......+.
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            99999999999999987    4444444  4567899999999 99999999999999999998876544433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-36  Score=242.73  Aligned_cols=204  Identities=15%  Similarity=0.182  Sum_probs=172.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC--eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      .|.++|.+++|+|++++|++++.|+.|++|+..++  +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            36789999999999999999999999999999887  5666778899999999999999999999999999999998876


Q ss_pred             ---EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EEeecC-CCCCeEEEEECCCCCEEEEecCCC
Q psy4393         103 ---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPA-HSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       103 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                         ....+..|...+.+++|+|+++++++++.|+.|++||++.++.   ...+.. |...|.+++|+|++.+|++++.|+
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence               5666778899999999999999999999999999999998763   566766 899999999999999999999999


Q ss_pred             eEEEEeCCC------------------ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         176 LCRIWDTAS------------------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       176 ~i~v~d~~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .|++||+..                  ++....+  .+...|.+++|+|++++|++++.||.|++||.+....
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            999999852                  3334443  6677899999999999999999999999999988765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6e-35  Score=239.99  Aligned_cols=217  Identities=16%  Similarity=0.220  Sum_probs=179.2

Q ss_pred             ceEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEE--EEEecccCCeEEEEECC-CCCEEEEEcCCCe
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSS-DSRLLVSGSDDKT   92 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   92 (247)
                      +.+......|...|++++|+| ++++||+|+.||.|++||...+...  ..+.+|...|++++|+| ++++|++++.|+.
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            334455668999999999999 5678999999999999998766543  34457899999999998 6889999999999


Q ss_pred             EEEEECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEE
Q psy4393          93 LKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIV  169 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  169 (247)
                      |++||++++........  +...+.+++|+|++.++++|+.||.|++||++. +.+..+..|...|.+++|+|++. +++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence            99999987654332222  233467889999999999999999999999974 55677889999999999999876 788


Q ss_pred             EecCCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      +++.|+.|++||+++.+....+.  ..+...|.+++|+|+|++|++++.||.|+|||.+.......+
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            99999999999998876544332  346678999999999999999999999999999887655444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.9e-33  Score=218.32  Aligned_cols=214  Identities=17%  Similarity=0.344  Sum_probs=190.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+|...|.+++|+|++++|++++.||.|++|+..+++  ....+..|...+.+++|+|+++.+++++.++.|++||+
T Consensus        91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            3334789999999999999999999999999999998776  55667778888999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      ++++....+..|...+.+++|+|+++.+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++.++
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            9999888999899999999999999999999999999999999998877764 567899999999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +||+.+++...  ...+...+..++|+|++++|++++.||.|++||.+..+++......
T Consensus       250 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  306 (337)
T 1gxr_A          250 VLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES  306 (337)
T ss_dssp             EEETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCC
Confidence            99999876543  3455678999999999999999999999999999988776554433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=230.10  Aligned_cols=210  Identities=23%  Similarity=0.364  Sum_probs=183.5

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKI   95 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v   95 (247)
                      ...+.+|.+.|.+++|+|++++|++|+.||.|++|+..  +......+.+|...|.+++|+++  +++|++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            34567999999999999999999999999999999997  45566678889999999999987  899999999999999


Q ss_pred             EECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECC------
Q psy4393          96 WELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNR------  163 (247)
Q Consensus        96 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~------  163 (247)
                      ||+.+++  ....+..|...+.+++|+|+  +.++++++.|+.|++||++.+.  ....+..|...+.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999886  66777788899999999999  9999999999999999998873  3445668889999999999      


Q ss_pred             -------CCCEEEEecCCCeEEEEeCCCceee---eeeccCCCCCeEEEEECCC---CCEEEEEEcCCeEEEEECCCcc
Q psy4393         164 -------DGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       164 -------~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                             ++.++++++.||.|++||+++++..   ......+...|.+++|+|+   +++|++++.||.|++||.+...
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                   6999999999999999999865422   2223456678999999999   8999999999999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-33  Score=226.06  Aligned_cols=215  Identities=18%  Similarity=0.229  Sum_probs=187.1

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ..|.++|.+++|+|++++|++++.|+.|++|+..+++  ....+.+|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            3589999999999999999999999999999998887  77788889999999999999999999999999999999887


Q ss_pred             eEEEE--EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EE-eecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         102 KCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LK-TLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       102 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      +....  +..+...+.+++|+|+++++++++.|+.+++||++.+..   .. ....|...+.+++|+|++.++++++.||
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            65443  356788899999999999999999999999999988762   22 3356788999999999999999999999


Q ss_pred             eEEEEeCC------------------CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         176 LCRIWDTA------------------SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       176 ~i~v~d~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .+++||++                  .++....+ ..+...+.+++|+|++++|++++.||.|++||.+..+++..+..+
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             CEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence            99999964                  44544443 355678999999999999999999999999999998888777765


Q ss_pred             Cc
Q psy4393         238 LN  239 (247)
Q Consensus       238 ~~  239 (247)
                      ..
T Consensus       244 ~~  245 (372)
T 1k8k_C          244 TL  245 (372)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.5e-34  Score=250.33  Aligned_cols=222  Identities=21%  Similarity=0.407  Sum_probs=203.6

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ....++.+|.+.|.+++|+|++++|++++.+|.|++||..++.....+.+|..+|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC-eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  175 (247)
                      +.+++....+..|...|.+++|+|++..+++++.||.|++||++++ .....+..|..++.+++|+| ++..+++++.||
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999987 66777888999999999999 888999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECC--CCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      .|++||+.+++....+...+...+..++|+|  ++++|++++.||.|++||.+...++..+..+..
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  229 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            9999999888777666666657889999999  999999999999999999998887777665543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.7e-33  Score=220.80  Aligned_cols=211  Identities=17%  Similarity=0.324  Sum_probs=185.8

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE---EEEEe--cccCCeEEEEECCCCCEEEEEcCCCeE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTL   93 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i   93 (247)
                      ......+|...|.+++|+|++++|++++ ||.|++|+..++..   ...+.  .|...+.+++|+|+++.+++++.|+.|
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  121 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            3344458999999999999999999998 99999999876542   22333  678889999999999999999999999


Q ss_pred             EEEECCCce--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          94 KIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        94 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      ++||+.+++  ....+..+...+.+++|+|+++.+++++.|+.|++||+++++.+..+..|...+.+++|+|++.+++++
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence            999998876  556677888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      +.||.+++||+++++....+.  ....+..++|+|++++|++++.||.|++||.+......
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             ecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence            999999999999988766553  45678999999999999999999999999998876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.3e-34  Score=230.47  Aligned_cols=208  Identities=23%  Similarity=0.438  Sum_probs=184.7

Q ss_pred             EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC-------eEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeE
Q psy4393          23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTL   93 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   93 (247)
                      +.+|.+.|.+++|+| ++++|++|+.||.|++|++.++       .....+.+|...|.+++|+|++ +.+++++.|+.|
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i  156 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI  156 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence            457999999999999 9999999999999999999876       4567788899999999999998 699999999999


Q ss_pred             EEEECCCceEEEEE--ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-cCCCCC-eEEEEECCCCCEEE
Q psy4393          94 KIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDP-VSAVHFNRDGSLIV  169 (247)
Q Consensus        94 ~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~  169 (247)
                      ++||+.+++....+  ..|...+.+++|+|++.++++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+
T Consensus       157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT  236 (402)
T ss_dssp             EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred             EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence            99999999988888  788999999999999999999999999999999999988888 677765 88999999999999


Q ss_pred             Ee---cCCCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393         170 SS---SYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP  230 (247)
Q Consensus       170 ~~---~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~  230 (247)
                      +|   +.|+.|++||+++++. .......+...+..++|+|++++|++++ .||.|++||.+..++
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            99   7899999999988654 3333334556789999999999997554 799999999998874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.9e-34  Score=232.90  Aligned_cols=208  Identities=20%  Similarity=0.277  Sum_probs=183.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..+....|+|++++|++++.||.|++||..++.....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            33455578999999999999999999999988877777789999999999999999999999999999999999888899


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC---CCCe---------------------EEEEECC
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH---SDPV---------------------SAVHFNR  163 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~i---------------------~~~~~~~  163 (247)
                      .+|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+   ...+                     .+++|+|
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            999999999999999999999999999999999999988877642   3334                     4455678


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCCcc-eEEEEc
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKVVT-PAIICS  235 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~  235 (247)
                      +++++++++.||.|++||+++++....+...+...+.+++|+|+++ +|++++.||.|++||.+... ++..+.
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  331 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL  331 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence            9999999999999999999998887777666778899999999999 99999999999999998764 344444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.6e-33  Score=240.09  Aligned_cols=214  Identities=33%  Similarity=0.550  Sum_probs=188.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|...|.+++|+|++++|++|+.||.|++||+.++.....+.+|...|.+++|+|+++.|++++.|+.|++||.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceEEEEE---ecCCccEEEEEEcCCC--CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          99 SSGKCLKTL---KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        99 ~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      .........   .+|...|.+++|+|++  ..+++++.|+.|++||+++++....+..|.+.|.+++|+|++++|++|+.
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            655433222   3577789999999986  68999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ||.|++||+++++.+..+.  ....+.+++|+|++.+|++++ ++.|+|||.+....+..+.
T Consensus       582 Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          582 DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence            9999999999998776543  345799999999998877765 6779999999887665543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-34  Score=231.12  Aligned_cols=207  Identities=24%  Similarity=0.439  Sum_probs=179.7

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||++
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            34456899999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             CceEEEEEecC---CccEEE---------------------EEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCC
Q psy4393         100 SGKCLKTLKGH---SNYVFC---------------------CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSD  154 (247)
Q Consensus       100 ~~~~~~~~~~~---~~~v~~---------------------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  154 (247)
                      +++.+..+..+   ...+.+                     ++|+|+++++++++.||.|++||+++++.+..+. .|..
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  291 (420)
T 3vl1_A          212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC  291 (420)
T ss_dssp             TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred             CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence            99888877642   333444                     4457889999999999999999999988776664 4778


Q ss_pred             CeEEEEECCCCC-EEEEecCCCeEEEEeCCCcee-eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         155 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       155 ~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+.+++|+|++. +|++++.||.|++||+++++. +..+..++..++..+.+ +++++|++++.||.|++||...
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            999999999999 999999999999999998754 55555556678888855 5788999999999999999876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-33  Score=222.60  Aligned_cols=211  Identities=27%  Similarity=0.389  Sum_probs=181.6

Q ss_pred             eEEEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   91 (247)
                      .....+.+|...|.+++|+++  +++|++++.||.|++||..+++  ....+..|...|.+++|+|+  +..+++++.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            344567789999999999987  9999999999999999998886  55667778899999999999  99999999999


Q ss_pred             eEEEEECCCce--EEEEEecCCccEEEEEEcC-------------CCCEEEEeeCCCCEEEEECCCCe----EEEeecCC
Q psy4393          92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTGK----CLKTLPAH  152 (247)
Q Consensus        92 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~  152 (247)
                      .|++||+.+..  ....+..|...+.++.|+|             ++.++++++.|+.|++||++++.    ....+..|
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            99999998763  3445678888999999999             69999999999999999998764    44567789


Q ss_pred             CCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCcee--eeee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQC--LKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       153 ~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~--~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ..+|.+++|+|+   +.+|++++.||.|++||+.+++.  ....  ...+...+..++|+|++++|++++.||.|++||.
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            999999999999   89999999999999999987631  1111  2235678999999999999999999999999998


Q ss_pred             CCc
Q psy4393         226 KVV  228 (247)
Q Consensus       226 ~~~  228 (247)
                      +..
T Consensus       286 ~~~  288 (379)
T 3jrp_A          286 NLE  288 (379)
T ss_dssp             EET
T ss_pred             CCC
Confidence            743

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-32  Score=232.88  Aligned_cols=213  Identities=39%  Similarity=0.663  Sum_probs=189.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      ..+.+|...|.+++|+|++++|++++.||.+++|+. +++....+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~  415 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  415 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence            456789999999999999999999999999999995 56777888889999999999999999999999999999995 5


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ++.+..+.+|...|.+++|+|+++++++++.|+.|++||. +++.+..+..|...+.+++|+|++++|++++.|+.|++|
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            6777888999999999999999999999999999999996 466778888999999999999999999999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      |. +++.+..+. .+...|++++|+|++++|++++.||.|+|||. +++++..+..+.+
T Consensus       495 ~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~  550 (577)
T 2ymu_A          495 NR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  550 (577)
T ss_dssp             ET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred             cC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence            96 456555543 45678999999999999999999999999995 5566666666554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-34  Score=232.80  Aligned_cols=222  Identities=18%  Similarity=0.294  Sum_probs=185.0

Q ss_pred             CCceEEEEE-ecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC---Ce---EEEEEecccCCeEEEEECCCCCEEEE
Q psy4393          15 PNYVLKFTL-AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GK---FEKTISGHKLGISDVAWSSDSRLLVS   86 (247)
Q Consensus        15 ~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~   86 (247)
                      +...+..++ .+|.+.|++++|+| ++++|++|+.||.|++||..+   +.   ....+ .|...|.+++|+|+++.|++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            444556677 78999999999999 999999999999999999865   32   12222 47889999999999999999


Q ss_pred             EcCCCeEEEEECC---CceEEEEEec------------CCccEEEEE--EcCCCCEEEEeeCCCCEEEEECCCCeEEEee
Q psy4393          87 GSDDKTLKIWELS---SGKCLKTLKG------------HSNYVFCCN--FNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (247)
Q Consensus        87 ~~~d~~i~v~d~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (247)
                      ++.|+.|++||+.   +++.......            +...+.++.  +++++.++++++.|+.|++||+++++.+..+
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9999999999994   4444333221            334455555  5678999999999999999999999999888


Q ss_pred             cC--CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC----CCCCEEEEEEcCCeEEEE
Q psy4393         150 PA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS----PNGKYILAATLDNTLKLW  223 (247)
Q Consensus       150 ~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~vw  223 (247)
                      ..  |...|.+++|+|++.+|++|+.||.|++||+++++.+..+...+..+|.+++|+    |++++|++++.||.|++|
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            87  788999999999999999999999999999999988887765566689999555    568899999999999999


Q ss_pred             ECCCcceEEEEccC
Q psy4393         224 DSKVVTPAIICSTP  237 (247)
Q Consensus       224 d~~~~~~~~~~~~~  237 (247)
                      |.+....+..+..+
T Consensus       289 d~~~~~~~~~~~~~  302 (437)
T 3gre_A          289 NFVKGHCQYAFINS  302 (437)
T ss_dssp             ETTTTEEEEEEESS
T ss_pred             EcCCCcEEEEEEcC
Confidence            99998887777654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3e-33  Score=226.52  Aligned_cols=218  Identities=18%  Similarity=0.254  Sum_probs=190.5

Q ss_pred             ceEEEEEecCCCCeEEEEECCC----C---CEEEEEeCCCeEEEEecCCCeE-----EEEEecc-----cCCeEEEEEC-
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPN----G---EWLASSSADKLIKIWGAYDGKF-----EKTISGH-----KLGISDVAWS-   78 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~----~---~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~-   78 (247)
                      +....++.+|...|.+++|+|+    +   ++|++++.||.|++|+..++..     ...+..|     ...|.+++|+ 
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            3345667799999999999999    9   9999999999999999987765     6777777     5889999999 


Q ss_pred             ---CCCCE-EEEEcCCCeEEEEECCC------ceEEE-----EEe-------cCCccEEEEEEcCCCCEEEEeeCCCCEE
Q psy4393          79 ---SDSRL-LVSGSDDKTLKIWELSS------GKCLK-----TLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVR  136 (247)
Q Consensus        79 ---~~~~~-l~~~~~d~~i~v~d~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~  136 (247)
                         |+++. +++++.|+.|++||+.+      ++.+.     .+.       .+...+.+++|+|++ ++++++.|+.|+
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~  210 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ  210 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence               99999 99999999999999988      65554     553       367889999999999 999999999999


Q ss_pred             EEECCCCeEEEeecC---C---CCCeEEEEECCCCCEEEEecCC---CeEEEEeCCCceeeeeeccC------------C
Q psy4393         137 IWDVRTGKCLKTLPA---H---SDPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDD------------D  195 (247)
Q Consensus       137 v~d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~------------~  195 (247)
                      +||+++++.+..+..   |   ..++.+++|+|++.+|++++.|   |.|++||+++++.+..+...            +
T Consensus       211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            999999999998888   8   8999999999999999999999   99999999998877766441            5


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         196 NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       196 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ...+.+++|+|++++|++++.||.|++||.+..+++..+.
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            6789999999999999999999999999999998888877

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=219.44  Aligned_cols=223  Identities=22%  Similarity=0.328  Sum_probs=180.0

Q ss_pred             CceEEEEEecCCCCeEEEEECCC---CCEEEEEeCCCeEEEEecCC-CeEE-EEEecccCCeEEEEECCCCCEEEEEcCC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYD-GKFE-KTISGHKLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      +......+.+|.+.|++++|+|+   |++|++|+.||.|++|+..+ +... ..+.+|...|.+++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            34445567899999999999999   69999999999999999986 4444 6778899999999999999999999999


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEE--cCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC---------------
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS---------------  153 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---------------  153 (247)
                      +.|++||+.+++... +..|...+.++.|  +|++.++++++.|+.|++||+++++.+..+..+.               
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA  186 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence            999999999888665 5668889999999  8999999999999999999999877655544332               


Q ss_pred             --------------------------CCeEEEEECCCCCE----EEEecCCCeEEEEeCCCce---eeeeeccCCC----
Q psy4393         154 --------------------------DPVSAVHFNRDGSL----IVSSSYDGLCRIWDTASGQ---CLKTLIDDDN----  196 (247)
Q Consensus       154 --------------------------~~i~~~~~~~~~~~----l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~----  196 (247)
                                                ....++.+.++...    +++++.||.+++||++...   ....+..+..    
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence                                      22344444443332    8999999999999998763   2333322211    


Q ss_pred             -------CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         197 -------PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       197 -------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                             .++.+++|+|++++|++++.||.|++||.+...++..+..+..
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence                   1699999999999999999999999999999888777665443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-32  Score=249.38  Aligned_cols=221  Identities=29%  Similarity=0.516  Sum_probs=199.5

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|.+.|++++|+|+|++|++|+.||.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      .+++.+..+.+|...+.++.|+|  ++.++++|+.|+.|++||+++++.+..+..|...|.+++|+|++.++++++.||.
T Consensus       687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            99999999999999999999999  5668999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCceeeeeec------------------------------------------------------cCCCCCeEEE
Q psy4393         177 CRIWDTASGQCLKTLI------------------------------------------------------DDDNPPVSFV  202 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~------------------------------------------------------~~~~~~v~~~  202 (247)
                      |++||+.+++....+.                                                      ..+...+..+
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            9999998765433221                                                      1344567889


Q ss_pred             EECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         203 KFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       203 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +|+|+++++++++.||.|++||.....++..+..+..
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  883 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS  883 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence            9999999999999999999999998887777666544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-32  Score=212.06  Aligned_cols=220  Identities=24%  Similarity=0.362  Sum_probs=192.6

Q ss_pred             CCCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      ++...+.+..++.+|.+.|.+++| |++++|++++.||.|++||..++.....+..|...|.+++|+|+++.+++++.|+
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            355566778889999999999999 9999999999999999999998888888888999999999999999999999999


Q ss_pred             eEEEEECCCc---eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECC-CCCE
Q psy4393          92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSL  167 (247)
Q Consensus        92 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  167 (247)
                      .+++|++...   +....+..|...+.++.|  +++.+++++.|+.+++||  .++....+..|..++.++.+.| ++..
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            9999998654   456677889999999999  577999999999999999  6777888889999999999988 8999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      +++++.||.+++||.  .+....+...+...+.+++|+|++. +++++.||.|++||.+..+++..+..+..
T Consensus       158 l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~  226 (313)
T 3odt_A          158 FLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES  226 (313)
T ss_dssp             EEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence            999999999999994  4445555555778899999999998 99999999999999999988887775544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7e-33  Score=227.65  Aligned_cols=210  Identities=20%  Similarity=0.405  Sum_probs=175.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----------EEEEEeccc------------CCeEEEEECCCC-
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISGHK------------LGISDVAWSSDS-   81 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   81 (247)
                      |.+.|++++|+|+|++|++|+.||.|++|+..++.           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            57899999999999999999999999999988765           466778887            789999999998 


Q ss_pred             -CEEEEEcCCCeEEEEECCCceEE---------------------------------------EE-EecCCccEEEEEEc
Q psy4393          82 -RLLVSGSDDKTLKIWELSSGKCL---------------------------------------KT-LKGHSNYVFCCNFN  120 (247)
Q Consensus        82 -~~l~~~~~d~~i~v~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  120 (247)
                       ..+++++.|+.|++||+.++...                                       +. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999998764431                                       12 35688899999999


Q ss_pred             CCCCEEEEeeCCCCEEEEECCC-CeEEE-------eecCCCCCeEEEEECCCC-CEEEEecCCCeEEEEeCCCcee----
Q psy4393         121 PQSNLIVSGSFDESVRIWDVRT-GKCLK-------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC----  187 (247)
Q Consensus       121 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~----  187 (247)
                      |+++++++| .|+.|++||++. ++.+.       .+..|...|.+++|+|++ .+|++|+.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 799999999984 44443       255788899999999998 9999999999999999998775    


Q ss_pred             eeeeccCCC-----------CCeEEEEECCCCCEEEEEEcCCeEEEEECCC-cceEEEEccC
Q psy4393         188 LKTLIDDDN-----------PPVSFVKFSPNGKYILAATLDNTLKLWDSKV-VTPAIICSTP  237 (247)
Q Consensus       188 ~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~  237 (247)
                      ...+..+..           ..|.+++|+|++++|++++. +.|++||.+. ..++..+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence            344433222           28999999999999999998 9999999987 6666666554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=244.24  Aligned_cols=208  Identities=16%  Similarity=0.208  Sum_probs=180.6

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ...+|...|++++|+|++++||+|+.||.|++|+....+....+ .|..+|.+++|+| +++|++++.|+.|++||+.++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            34589999999999999999999999999999998776654443 4677899999999 889999999999999999999


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-----------EeecCCCCCeEEEEECCC-CCEEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-----------KTLPAHSDPVSAVHFNRD-GSLIV  169 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~l~  169 (247)
                      +.+..+. +...|.+++|+|+++++++|+.||.|++||+++++..           .....|.++|.+++|+|+ +..++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            8887776 5678999999999999999999999999999988753           223568889999999996 46899


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccC-----------------CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDD-----------------DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      +|+.||.+ +||+++++....+..+                 +...|.+++|+|+|++|++++.||.|++||.++++++.
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            99999999 9999998877665432                 23569999999999999999999999999999887765


Q ss_pred             E
Q psy4393         233 I  233 (247)
Q Consensus       233 ~  233 (247)
                      .
T Consensus       248 ~  248 (902)
T 2oaj_A          248 A  248 (902)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-33  Score=225.66  Aligned_cols=206  Identities=22%  Similarity=0.386  Sum_probs=177.7

Q ss_pred             EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      ....+.+|...|.+++|+| ++++|++++.||.|++||..+++....+   ..|...|.+++|+|+++.+++++.|+.|+
T Consensus       107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence            4456778999999999999 8999999999999999999998888887   67888999999999999999999999999


Q ss_pred             EEECCCceEEEEEe----------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-
Q psy4393          95 IWELSSGKCLKTLK----------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-  145 (247)
Q Consensus        95 v~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-  145 (247)
                      +||+.+++....+.                            .|...|.+++|+  ++++++++.|+.|++||++++.. 
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence            99998765433222                            378889999998  67999999999999999987643 


Q ss_pred             -------------EEeecCCCCCeEEEEECCC--CCEEEEecCCCeEEEEeCCCceeee----eeccC-CCCCeEEEEEC
Q psy4393         146 -------------LKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLK----TLIDD-DNPPVSFVKFS  205 (247)
Q Consensus       146 -------------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~-~~~~v~~~~~s  205 (247)
                                   +..+..|...+.+++|+|+  +.+|++++.||.|++||+.+++...    .+..+ +...|..++|+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  344 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS  344 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred             ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence                         6677788889999999999  9999999999999999999875432    33222 25789999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECC
Q psy4393         206 PNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       206 ~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |++++|++++.||.|++||..
T Consensus       345 ~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          345 RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCeEEEEeCCCEEEEEEec
Confidence            999999999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-32  Score=222.86  Aligned_cols=208  Identities=22%  Similarity=0.296  Sum_probs=181.9

Q ss_pred             EEEEecC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEecCC------CeEEE-----EEe-------cccCC
Q psy4393          20 KFTLAGH-----TKAVSSVKFS----PNGEW-LASSSADKLIKIWGAYD------GKFEK-----TIS-------GHKLG   71 (247)
Q Consensus        20 ~~~~~~h-----~~~v~~~~~s----~~~~~-l~~~~~dg~v~iw~~~~------~~~~~-----~~~-------~~~~~   71 (247)
                      ...+..|     ...|.+++|+    |++++ |++++.||.|++||...      +....     .+.       .|...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            4556677     5899999999    99999 99999999999999877      44433     553       36778


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec---C---CccEEEEEEcCCCCEEEEeeCC---CCEEEEECCC
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG---H---SNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRT  142 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~  142 (247)
                      +.+++|+|++ .+++++.|+.|++||+++++.+..+..   |   ...+.+++|+|++.++++++.|   +.|++||+++
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            9999999999 999999999999999999998888888   8   8899999999999999999999   9999999999


Q ss_pred             CeEEEeecC-------------CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeecc-----CC---------
Q psy4393         143 GKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-----DD---------  195 (247)
Q Consensus       143 ~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~---------  195 (247)
                      ++.+..+..             |...+.+++|+|++.+|++++.||.|++||+.+++.+..+..     .+         
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence            999888887             899999999999999999999999999999999988777651     23         


Q ss_pred             ------CCCeEEEEECCCC----------CEEEEEEcCCeEEEEECCCc
Q psy4393         196 ------NPPVSFVKFSPNG----------KYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       196 ------~~~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~~  228 (247)
                            ..+|..++|+|++          ++|++++.||.|++||.+++
T Consensus       348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                  6789999999998          79999999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=225.91  Aligned_cols=215  Identities=15%  Similarity=0.283  Sum_probs=186.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~   99 (247)
                      .|...|.+++|+|++++|++++.||.|++|+...    ......+.+|...|.+++|+|+ ++++++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            4788999999999999999999999999999976    3467778889999999999998 8999999999999999998


Q ss_pred             Cce------EEEE---EecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC------CCCeEEEEECC
Q psy4393         100 SGK------CLKT---LKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------SDPVSAVHFNR  163 (247)
Q Consensus       100 ~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~  163 (247)
                      +++      ....   ...|...+.+++|+|+ +.++++++.|+.|++||+++++.+..+..+      ...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            876      2222   3567888999999998 789999999999999999999988888766      78899999999


Q ss_pred             CC-CEEEEecCCC---eEEEEeCCCceeeeeecc-CCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         164 DG-SLIVSSSYDG---LCRIWDTASGQCLKTLID-DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       164 ~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ++ .++++++.++   .|++||+++++....... .+...+..++|+| ++++|++++.||.|++||.++.+++..+..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence            97 6899999998   999999998643333333 5677899999999 9999999999999999999999888877665


Q ss_pred             Cc
Q psy4393         238 LN  239 (247)
Q Consensus       238 ~~  239 (247)
                      ..
T Consensus       305 ~~  306 (416)
T 2pm9_A          305 GN  306 (416)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=235.65  Aligned_cols=205  Identities=14%  Similarity=0.118  Sum_probs=173.5

Q ss_pred             EEEecCCCCeEEEEECCC------CCEEEEEeCCCeEEEEecCCCeE-----------EEEEecccCCeEEEEECCCCCE
Q psy4393          21 FTLAGHTKAVSSVKFSPN------GEWLASSSADKLIKIWGAYDGKF-----------EKTISGHKLGISDVAWSSDSRL   83 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~------~~~l~~~~~dg~v~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~   83 (247)
                      .++..|.+.|.+++|+|+      +.+||+++.||.|++|++..+..           ...+.+|...|.+++|+++ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            446678899999999997      57999999999999999875531           1356778889999999986 48


Q ss_pred             EEEEcCCCeEEEEECCCce-EEEEEecCCccEEEE--EEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCC--CCeE
Q psy4393          84 LVSGSDDKTLKIWELSSGK-CLKTLKGHSNYVFCC--NFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVS  157 (247)
Q Consensus        84 l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~  157 (247)
                      |++|+.||.|++||++++. ....+.+|...|.++  .|+|++ .+|++++.|+.|++||+++++.+..+..|.  ..+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            9999999999999998763 445678899999998  578887 899999999999999999877655554443  2478


Q ss_pred             EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +++|+|++..+++++.|+.|++||+++++....+. .+...|..++|+|+|++|++|+.||+|++||...
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            89999999999999999999999999987766554 4667899999999999999999999999999754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.3e-32  Score=218.34  Aligned_cols=207  Identities=20%  Similarity=0.300  Sum_probs=182.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--ecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ...++.+|...|.+++|+|++++|++++.||.|++|+..+++.....  ..|...|.+++|+|+++++++++.|+.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            45667789999999999999999999999999999999887655443  5678889999999999999999999999999


Q ss_pred             ECCCceE---EEEE-ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEEC------------------CCCeEEEeecCCCC
Q psy4393          97 ELSSGKC---LKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------------------RTGKCLKTLPAHSD  154 (247)
Q Consensus        97 d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~------------------~~~~~~~~~~~~~~  154 (247)
                      |+..+..   ...+ ..|...+.+++|+|++.++++++.|+.+++||+                  ..++.+..+..|..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9987652   2233 566888999999999999999999999999995                  36778888889999


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .+.+++|+|++.+|++++.|+.|++||+++++.+..+. .+..++..++|+|++++|+++ .|+.|++||.+.
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999999999999999999999988776664 445689999999999988887 899999999987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=218.62  Aligned_cols=201  Identities=23%  Similarity=0.454  Sum_probs=180.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      |...|++++|+|++++|++++.||.|++|+ .++.....+..|...|.+++|+|+++.+++++.|+.|++||+.+++...
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            678999999999999999999999999999 5777888888899999999999999999999999999999998765443


Q ss_pred             E--------------------------------------------------------EecCCccEEEEEEcCCCCEEEEe
Q psy4393         106 T--------------------------------------------------------LKGHSNYVFCCNFNPQSNLIVSG  129 (247)
Q Consensus       106 ~--------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~  129 (247)
                      .                                                        +..|...+.+++|+|++.+++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence            2                                                        23456678999999999999999


Q ss_pred             eCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC
Q psy4393         130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       130 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      +.|+.|++||+++++.+..+..|...+.+++|+|++ .+++++.|+.|++||+.+++.+..+. .+...+..++|+|+++
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~  343 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQ  343 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSS
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCC
Confidence            999999999999998888888899999999999999 99999999999999999988776654 4456899999999999


Q ss_pred             EEEEEEcCCeEEEEECCCcc
Q psy4393         210 YILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +|++++.||.|++||.+...
T Consensus       344 ~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          344 KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEEETTSCEEEEECHHHH
T ss_pred             EEEEEECCCeEEEEECCCCc
Confidence            99999999999999999887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-32  Score=220.52  Aligned_cols=207  Identities=22%  Similarity=0.345  Sum_probs=184.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE----------------------------------
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----------------------------------   64 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~----------------------------------   64 (247)
                      ....+.+|...|.+++|+|++++|++++.||.|++|+..+++....                                  
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (425)
T 1r5m_A          141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF  220 (425)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred             eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence            3455678999999999999999999999999999999876654332                                  


Q ss_pred             ----------------------EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC
Q psy4393          65 ----------------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ  122 (247)
Q Consensus        65 ----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  122 (247)
                                            +..|...|.+++|+|+++.+++++.|+.|++||+.+++....+..+...+.++.|+|+
T Consensus       221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  300 (425)
T 1r5m_A          221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD  300 (425)
T ss_dssp             EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred             EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence                                  2345677899999999999999999999999999998888888889999999999999


Q ss_pred             CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce----------------
Q psy4393         123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----------------  186 (247)
Q Consensus       123 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----------------  186 (247)
                      + .+++++.|+.|++||+++++.+..+..|..++.+++|+|++.+|++++.||.|++||+.+++                
T Consensus       301 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          301 D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred             C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence            9 99999999999999999999999999999999999999999999999999999999998877                


Q ss_pred             ----eeeeeccCCCC-CeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         187 ----CLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       187 ----~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                          .+..+..+... .|..++|+|++++|++++.||.|++||.+
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                55555444333 89999999999999999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.6e-32  Score=219.31  Aligned_cols=210  Identities=22%  Similarity=0.426  Sum_probs=180.1

Q ss_pred             EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEe-------------cccCCeEEEEECC-CCCEEE
Q psy4393          21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------------GHKLGISDVAWSS-DSRLLV   85 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l~   85 (247)
                      ..+.+|.+.|.+++|+| ++++|++|+.||.|++|+..++.....+.             +|...|.+++|+| ++..++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            45568999999999999 99999999999999999998764433222             4788999999999 778999


Q ss_pred             EEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393          86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        86 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  162 (247)
                      +++.|+.|++||+.+++....+. +...+.++.+.+.   +.++++++.++.|++||+++++.+..+..|...|.+++|+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~  195 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS  195 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred             EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence            99999999999999988877766 5667888999884   4599999999999999999999888999999999999999


Q ss_pred             CCCC-EEEEecCCCeEEEEeCCCceee-eee--------------ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         163 RDGS-LIVSSSYDGLCRIWDTASGQCL-KTL--------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       163 ~~~~-~l~~~~~dg~i~v~d~~~~~~~-~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |++. ++++++.||.|++||+++++.. ..+              ...+...|.+++|+|++++|++++.||.|++||.+
T Consensus       196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            9998 5899999999999999876522 211              13456789999999999999999999999999998


Q ss_pred             CcceE
Q psy4393         227 VVTPA  231 (247)
Q Consensus       227 ~~~~~  231 (247)
                      .....
T Consensus       276 ~~~~~  280 (408)
T 4a11_B          276 NGENT  280 (408)
T ss_dssp             TCCBC
T ss_pred             CCccc
Confidence            87654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-31  Score=211.46  Aligned_cols=218  Identities=18%  Similarity=0.279  Sum_probs=192.4

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-----CeE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----KTL   93 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i   93 (247)
                      ...++.+|...|.+++|+|++++|++++.||.|++||+.+++....+. +...+.+++|+|+++.+++++.+     +.|
T Consensus        66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            455677899999999999999999999999999999999988887777 77889999999999999999998     999


Q ss_pred             EEEECCCce-----------EEEEEecCCc--cEEEEEEcCCCCEEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEE
Q psy4393          94 KIWELSSGK-----------CLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAV  159 (247)
Q Consensus        94 ~v~d~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~  159 (247)
                      ++||+....           ....+..+..  .+.+++|+|+++.+++++.||.|++||+++ ++.+..+..|...+.++
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence            999987543           2233444544  799999999999999999999999999998 78888888999999999


Q ss_pred             EECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC--------------eEEEEEC
Q psy4393         160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------TLKLWDS  225 (247)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~vwd~  225 (247)
                      +|+|++.+|++++.|+.|++||+++++....+.  ....+..++|+|+++++++++.++              .+++||.
T Consensus       225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             EECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            999999999999999999999999988777664  456789999999999999999988              8999999


Q ss_pred             CCcceEEEEccCCc
Q psy4393         226 KVVTPAIICSTPLN  239 (247)
Q Consensus       226 ~~~~~~~~~~~~~~  239 (247)
                      ....++..+..+..
T Consensus       303 ~~~~~~~~~~~~~~  316 (369)
T 3zwl_B          303 IFEEEIGRVQGHFG  316 (369)
T ss_dssp             TTCCEEEEEECCSS
T ss_pred             CCCcchhheecccC
Confidence            99888877766544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.9e-31  Score=208.61  Aligned_cols=211  Identities=31%  Similarity=0.546  Sum_probs=174.7

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ....++.+|...|.+++|+|++++|++++.|+.|++|+............+...+....+.+++..+++++.|+.+++||
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            34566789999999999999999999999999999999998888888888888899999999999999999999999999


Q ss_pred             CCCceEE-EEEecCCccEEEEEEcCCC--CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          98 LSSGKCL-KTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        98 ~~~~~~~-~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      ....... ....+|...+..++|++++  .++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            8765433 3445677889999998754  578899999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCceeeeeecc------------------------------------------------CCCCCeEEEEECC
Q psy4393         175 GLCRIWDTASGQCLKTLID------------------------------------------------DDNPPVSFVKFSP  206 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~------------------------------------------------~~~~~v~~~~~s~  206 (247)
                      |.|++||+++.+.+..+..                                                .+...|.+++|+|
T Consensus       237 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          237 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             CeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence            9999999988765433211                                                1223456666777


Q ss_pred             CCCEEEEEEcCCeEEEEECCCc
Q psy4393         207 NGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       207 ~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      ++++|++|+.||.|+|||++++
T Consensus       317 dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          317 DGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             TSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCCEEEEEeCCCEEEEEeCCCc
Confidence            7777777777777777766554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-33  Score=227.04  Aligned_cols=205  Identities=16%  Similarity=0.224  Sum_probs=168.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      ...++.+|...|.+++|+|++++|++++.|+.|++||..++.   ....+..|...|.+++|+|+++.|++++.|+.|++
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV  126 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence            334566899999999999999999999999999999998766   55667788999999999999999999999999999


Q ss_pred             EECCCce---EEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECC------------------CCeEEEeecCCC
Q psy4393          96 WELSSGK---CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR------------------TGKCLKTLPAHS  153 (247)
Q Consensus        96 ~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~  153 (247)
                      ||+++++   ....+.. |...+.+++|+|+++++++++.|+.|++||++                  .++.+..+ .|.
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  205 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG  205 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence            9998876   3566777 88999999999999999999999999999985                  34455666 888


Q ss_pred             CCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee----eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       154 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..|.+++|+|++++|++++.||.|++||+.+++.    +..+ ..+..++.+++|+|++++|++++.++.+ +|+..
T Consensus       206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999999999999999999999998876    3333 3456689999999999999988766655 67654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=221.65  Aligned_cols=213  Identities=15%  Similarity=0.140  Sum_probs=182.2

Q ss_pred             ecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecC--CCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          24 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAY--DGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      .+|.+.|.+++|+|++++| ++++.||.|++|++.  ++.....+.  .+...|.+++|+|++++|++++.++.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677899999999999996 888899999999998  777777765  45678999999999999999999999999999


Q ss_pred             CCceEEE----EEecCCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEE
Q psy4393          99 SSGKCLK----TLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        99 ~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      .++....    .+.+|...|.+++|+|+   +.++++++.|+.|++||+++++.+.. +..|...|.+++|+ ++.+|++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            8776443    66778899999999999   99999999999999999999887776 55889999999999 9999999


Q ss_pred             ecCCCeEEEEeCCCceeeeeecc------------------------CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEEC
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLID------------------------DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~  225 (247)
                      ++.|+.|++||+.+++.+..+..                        .....+..++|+|++++|++++ .|+.|+|||.
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999887665531                        1234688999999999999999 8999999999


Q ss_pred             --CCc---ceEEEEccC
Q psy4393         226 --KVV---TPAIICSTP  237 (247)
Q Consensus       226 --~~~---~~~~~~~~~  237 (247)
                        ...   .++..+..+
T Consensus       338 ~~~~~~~l~~~~~~~~~  354 (450)
T 2vdu_B          338 SEKQKGDLALKQIITFP  354 (450)
T ss_dssp             CSSSTTCEEEEEEEECS
T ss_pred             ccCCCCceeeccEeccC
Confidence              444   444444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=222.84  Aligned_cols=216  Identities=19%  Similarity=0.379  Sum_probs=176.9

Q ss_pred             CCceEEEEEecCC------------CCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCeEE------------------
Q psy4393          15 PNYVLKFTLAGHT------------KAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFE------------------   62 (247)
Q Consensus        15 ~~~~~~~~~~~h~------------~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~~~~------------------   62 (247)
                      ..+.....+.+|.            +.|.+++|+|++  .+|++++.|+.|++|+..++...                  
T Consensus        69 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~  148 (447)
T 3dw8_B           69 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT  148 (447)
T ss_dssp             CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCC
T ss_pred             cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccc
Confidence            3455667788998            889999999998  78999999999999998653321                  


Q ss_pred             ---------------------EE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEE-------EEecCCc
Q psy4393          63 ---------------------KT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLK-------TLKGHSN  112 (247)
Q Consensus        63 ---------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~  112 (247)
                                           .. ..+|...|.+++|+|+++.|+++ .|+.|++||+.+ ++...       .+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (447)
T 3dw8_B          149 VTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE  227 (447)
T ss_dssp             CCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC
T ss_pred             ccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc
Confidence                                 12 24688889999999999999998 799999999984 33433       2457888


Q ss_pred             cEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeE----EEeecCCCC------------CeEEEEECCCCCEEEEecCCC
Q psy4393         113 YVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC----LKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       113 ~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .|.+++|+|++ +++++++.|+.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            89999999998 9999999999999999998876    677777765            8999999999999999998 9


Q ss_pred             eEEEEeCCC-ceeeeeeccCCC--C------------CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         176 LCRIWDTAS-GQCLKTLIDDDN--P------------PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       176 ~i~v~d~~~-~~~~~~~~~~~~--~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      .|++||+++ ++.+..+..+..  .            .+..++|+|++++|++++.||.|++||.+..+.+.
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            999999987 665555433211  0            12348999999999999999999999999887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-31  Score=235.01  Aligned_cols=218  Identities=26%  Similarity=0.449  Sum_probs=195.8

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.+|..+|.+++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|+++.+++++.|+.|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc-eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECC--CCCEEEEecC
Q psy4393          99 SSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNR--DGSLIVSSSY  173 (247)
Q Consensus        99 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~  173 (247)
                      .++ .....+..|...+.+++|+| ++..+++++.||.|++||++++.....+..+. ..+.+++|+|  ++.++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            886 66777888999999999999 88999999999999999998887766665544 7899999999  9999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ||.|++||+.+++....+. .+...+.+++|+|++++|++++.||.|++||..+..++..+..+
T Consensus       207 dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            9999999999988776654 45568999999999999999999999999999988777666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.3e-32  Score=214.74  Aligned_cols=211  Identities=17%  Similarity=0.303  Sum_probs=177.4

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEE-EEeC---CCeEEEEecCCCeEEEEE-ecccCCeEEEEECCC---CCEEEEEcCC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLA-SSSA---DKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD---SRLLVSGSDD   90 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~-~~~~---dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d   90 (247)
                      ....+.+|...|.+++|+|++..++ +++.   ||.|++|+..+++..... .+|...|.+++|+|+   ++++++++.|
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4455678999999999999997554 5555   899999999887765443 368889999999998   6999999999


Q ss_pred             CeEEEEECCCce-EEEEEecCCccEEEEE------EcCCCCEEEEeeCCCCEEEEECCCCe-EEEeecCCCC----CeEE
Q psy4393          91 KTLKIWELSSGK-CLKTLKGHSNYVFCCN------FNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSD----PVSA  158 (247)
Q Consensus        91 ~~i~v~d~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~----~i~~  158 (247)
                      +.|++||+.+++ ....+.+|...|.++.      |+|+++.+++++.|+.|++||+++++ .+..+..+.+    .+.+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            999999999887 7788889999999995      46889999999999999999999876 5666665544    7888


Q ss_pred             EE----ECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECC---CCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         159 VH----FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       159 ~~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ++    |+|++.++++++.||.|++||+++++....  ..+...+.+++|+|   ++++|++++.||.|++||.+...+.
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  247 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT  247 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence            88    789999999999999999999999876443  34456899999999   9999999999999999998876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.5e-32  Score=214.97  Aligned_cols=206  Identities=20%  Similarity=0.381  Sum_probs=177.8

Q ss_pred             EecCCCCeEEEEECCC----CCEEEEEeCCCeEEEEecCCCeEEEEEec-----ccCCeEEEEECCC----CCEEEEEcC
Q psy4393          23 LAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSD----SRLLVSGSD   89 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~   89 (247)
                      ..+|.++|.+++|+|+    ...+++++.++.|++|+..+++....+..     +...|.+++|+|+    +.++++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3489999999999984    44666677788999999987776666554     3467999999998    678999999


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEee---cCCCCCeEEEEECCCC
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRDG  165 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~  165 (247)
                      |+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++.+..+   ..|...|.+++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999999999999999999999999999 9999999999999999999999988887   6789999999999999


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeec---------------------------cCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQCLKTLI---------------------------DDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                      .+|++++.||.|++||+++++....+.                           ..+...|.+++|+  +++|++++.||
T Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~  251 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN  251 (366)
T ss_dssp             SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred             CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence            999999999999999999875433221                           1256678999998  77999999999


Q ss_pred             eEEEEECCCcce
Q psy4393         219 TLKLWDSKVVTP  230 (247)
Q Consensus       219 ~i~vwd~~~~~~  230 (247)
                      .|++||.+...+
T Consensus       252 ~i~~wd~~~~~~  263 (366)
T 3k26_A          252 AIVCWKPGKMED  263 (366)
T ss_dssp             EEEEEEESSTTC
T ss_pred             EEEEEeCCCccc
Confidence            999999877643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-32  Score=238.96  Aligned_cols=208  Identities=24%  Similarity=0.378  Sum_probs=179.5

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEECCC--CCEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~   96 (247)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|+..  ++.....+.+|..+|.+++|+|+  ++.+++++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4567999999999999999999999999999999987  44566678889999999999988  9999999999999999


Q ss_pred             ECCCce--EEEEEecCCccEEEEEEcCC--CCEEEEeeCCCCEEEEECCCCe--EEEeecCCCCCeEEEEECC-------
Q psy4393          97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNR-------  163 (247)
Q Consensus        97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~-------  163 (247)
                      |+.+++  ....+..|...|.++.|+|+  +..+++|+.||.|++||++.+.  ....+..|...+.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  66777889999999999999  9999999999999999998773  3445668889999999999       


Q ss_pred             ------CCCEEEEecCCCeEEEEeCCCcee---eeeeccCCCCCeEEEEECCC---CCEEEEEEcCCeEEEEECCCc
Q psy4393         164 ------DGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       164 ------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~  228 (247)
                            ++.++++|+.||.|++||++++..   .......+..+|.+++|+|+   +++|++++.||.|++||.+..
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                  588999999999999999987632   22223456778999999999   899999999999999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=223.64  Aligned_cols=212  Identities=17%  Similarity=0.301  Sum_probs=179.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CCeEEEEEec------------ccCCeEEEE--ECCCCCEEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISG------------HKLGISDVA--WSSDSRLLVSG   87 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~   87 (247)
                      +|...|.+++|+|++++|++++.||.|++||+.   .++.......            +...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            589999999999999999999999999999984   4443333222            234455555  56789999999


Q ss_pred             cCCCeEEEEECCCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCeEEEEEC--
Q psy4393          88 SDDKTLKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFN--  162 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~--  162 (247)
                      +.|+.|++||+++++.+..+..  |...|.+++|+|++.++++|+.||.|++||+++++.+..+. .|..+|.+++++  
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            9999999999999999988887  78899999999999999999999999999999999888876 677789999665  


Q ss_pred             --CCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------------------------CCCCeEEEEECCCCCEEEEEE
Q psy4393         163 --RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------------------------DNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       163 --~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------------------~~~~v~~~~~s~~~~~l~~~~  215 (247)
                        |++.+|++++.||.|++||+++++....+...                         +...|.+++|+ ++++|++++
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~  347 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE  347 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence              46779999999999999999998876665422                         33457889999 779999999


Q ss_pred             cCCeEEEEECCCcceEEEEccC
Q psy4393         216 LDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       216 ~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .||.|++||.+..+....+..+
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC
T ss_pred             CCCeEEEEECCCcccceEEecc
Confidence            9999999999998877776654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.3e-31  Score=226.52  Aligned_cols=216  Identities=22%  Similarity=0.347  Sum_probs=194.6

Q ss_pred             EEEEEecCCCC-eEEEEECC--CCCEEEEEeCCCeEEEEecCCC--------eEEEEEecccCCeEEEEECCCCCEEEEE
Q psy4393          19 LKFTLAGHTKA-VSSVKFSP--NGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        19 ~~~~~~~h~~~-v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (247)
                      ....+.+|... |.+++|+|  ++++|++++.||.|++|+..++        .....+..|..+|.+++|+|++++++++
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            45667899999 99999999  9999999999999999999744        5566777889999999999999999999


Q ss_pred             cCC----CeEEEEECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCC---CeEEE
Q psy4393          88 SDD----KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSD---PVSAV  159 (247)
Q Consensus        88 ~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~~  159 (247)
                      +.+    +.|.+||  .++....+..|...+.++.|+|++. .+++++.|+.|++||+++++.+..+..|..   .+.++
T Consensus       135 ~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~  212 (615)
T 1pgu_A          135 GEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  212 (615)
T ss_dssp             ECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             ccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence            887    6888888  5667788889999999999999998 899999999999999999999999999988   99999


Q ss_pred             EECCC-CCEEEEecCCCeEEEEeCCCceeeeeecc---CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         160 HFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       160 ~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +|+|+ +++|++++.||.|++||+.+++.+..+..   .+...|..++|+ ++++|++++.||.|++||.+..+++..+.
T Consensus       213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            99999 99999999999999999999988777634   667889999999 99999999999999999999888777766


Q ss_pred             cC
Q psy4393         236 TP  237 (247)
Q Consensus       236 ~~  237 (247)
                      .+
T Consensus       292 ~~  293 (615)
T 1pgu_A          292 LD  293 (615)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-31  Score=213.60  Aligned_cols=204  Identities=25%  Similarity=0.425  Sum_probs=182.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC-CceE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~  103 (247)
                      .|...|.+++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|  ++..+++++.|+.|++||++ ....
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            37899999999999999999999999999999999999999999999999999  56799999999999999998 4566


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC-EEEEec--CCCeEEEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSS--YDGLCRIW  180 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~v~  180 (247)
                      ...+..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++. ++++++  .|+.|++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            778889999999999999999999999999999999999999888989999999999999765 566654  79999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cCCeEEEEECCCcceEE
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~  232 (247)
                      |+.+++....+.  ....+..++|+|++++|++++  .||.|++||.+......
T Consensus       290 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          290 NAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             ETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred             ECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence            999988777663  346799999999999999954  89999999998854433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6e-31  Score=217.47  Aligned_cols=216  Identities=27%  Similarity=0.556  Sum_probs=189.3

Q ss_pred             EEEEEecCCCCe-EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ...++.+|...| .++.+  ++++|++|+.||.|++||..+++....+.+|...|.+++|+|++ .+++++.|+.|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            456788998885 55555  57899999999999999999999999999999999999999988 899999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEc--CCCCEEEEeeCCCCEEEEECCCCeE-----------------------EEeecCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVRTGKC-----------------------LKTLPAH  152 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~  152 (247)
                      +.+++....+.+|...|.+++|+  +++.++++++.|+.|++||++++..                       +..+..|
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            99999999999999999999998  5778999999999999999987652                       3456677


Q ss_pred             CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      ...+.++  ++++.++++++.||.|++||+.+++.+..+. .+...+.+++|+|++++|++++.||.|++||.++++++.
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            7777766  5778999999999999999999988777654 456789999999999999999999999999999999888


Q ss_pred             EEccCCcc
Q psy4393         233 ICSTPLNL  240 (247)
Q Consensus       233 ~~~~~~~~  240 (247)
                      .+..+...
T Consensus       347 ~~~~h~~~  354 (464)
T 3v7d_B          347 TLQGHTAL  354 (464)
T ss_dssp             EECCCSSC
T ss_pred             EEeCCCCc
Confidence            87766553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-31  Score=216.32  Aligned_cols=212  Identities=19%  Similarity=0.274  Sum_probs=176.4

Q ss_pred             EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecc---cCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      +...+|...|.+++|+| ++++|++++.|+.|++||... .....+..+   ...|.+++|+|+++.+++++.|+.|++|
T Consensus       112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            33347999999999999 789999999999999999975 444445433   3679999999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCC----CeEEEeecCCCCCeEEEEECC-CCCEEEE
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRT----GKCLKTLPAHSDPVSAVHFNR-DGSLIVS  170 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  170 (247)
                      |+ +++.+..+..|...|.+++|+|++. ++++++.|+.|++||+++    +..+..+ .|...+.+++|+| ++.+|++
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence            99 5677888899999999999999998 999999999999999997    5555555 5889999999999 9999999


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccC------CC----------CCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         171 SSYDGLCRIWDTASGQCLKTLIDD------DN----------PPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~------~~----------~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      ++.|+.|++||+++++....+..+      +.          ..+..++|+|++++  +++.||.|++||.++.+++..+
T Consensus       269 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          269 TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            999999999999987655444321      11          23444666777766  6678999999999999888777


Q ss_pred             ccC
Q psy4393         235 STP  237 (247)
Q Consensus       235 ~~~  237 (247)
                      ..+
T Consensus       347 ~~~  349 (383)
T 3ei3_B          347 RDP  349 (383)
T ss_dssp             CBT
T ss_pred             cCC
Confidence            653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.4e-31  Score=208.67  Aligned_cols=196  Identities=17%  Similarity=0.205  Sum_probs=153.1

Q ss_pred             CCeEEEEECCC----CCEEEEEeC--------------------CCeEEEEec-CCCeEEEEEecccCCeEEEEECC---
Q psy4393          28 KAVSSVKFSPN----GEWLASSSA--------------------DKLIKIWGA-YDGKFEKTISGHKLGISDVAWSS---   79 (247)
Q Consensus        28 ~~v~~~~~s~~----~~~l~~~~~--------------------dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~---   79 (247)
                      +.|.+++|+|+    ++.++.++.                    |+.|++|++ .+++....+..|...+..++|+|   
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            35667777888    777776553                    888899998 45777778888888888889988   


Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEEEEEecCCc---cEEEEEEcCCCCEE------------EEeeCCCCEEEEECCCCe
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN---YVFCCNFNPQSNLI------------VSGSFDESVRIWDVRTGK  144 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~~~d~~i~v~d~~~~~  144 (247)
                      ++..|++++.|++|++||++++++++.+.++..   .+.+++|+|++.++            ++|+.|+.+++||..+++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            779999999999999999999999999986543   56677899999876            567889999999999998


Q ss_pred             EEEee-----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCe
Q psy4393         145 CLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  219 (247)
Q Consensus       145 ~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  219 (247)
                      .+..+     ..|...+.+..+  ++.++++++.|++|++||+.+++.+.++..+....+..++|+|||++|++|+.|++
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            77654     245444443333  47789999999999999999999888876544445667899999999999999999


Q ss_pred             EEEEEC
Q psy4393         220 LKLWDS  225 (247)
Q Consensus       220 i~vwd~  225 (247)
                      |+|||.
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-30  Score=214.97  Aligned_cols=211  Identities=27%  Similarity=0.560  Sum_probs=186.2

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEEC--CCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~   96 (247)
                      ...++.+|.+.|.+++|+|++ +|++|+.||.|++||..+++....+.+|...|.+++|+  +++..+++++.|+.|++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            456677899999999999988 89999999999999999999999999999999999998  578899999999999999


Q ss_pred             ECCCceE-----------------------EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC
Q psy4393          97 ELSSGKC-----------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS  153 (247)
Q Consensus        97 d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  153 (247)
                      |+.++..                       ...+.+|...+.++  +++++.+++++.|+.|++||+++++.+..+..|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            9987642                       44566777777665  6778999999999999999999999999999999


Q ss_pred             CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       154 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ..+.+++|+|++.++++|+.||.|++||+++++.+..+. .+...+.+++|+  +++|++++.||.|++||.++......
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            999999999999999999999999999999998877664 456789999997  58999999999999999998776555


Q ss_pred             Ec
Q psy4393         234 CS  235 (247)
Q Consensus       234 ~~  235 (247)
                      ..
T Consensus       388 ~~  389 (464)
T 3v7d_B          388 YH  389 (464)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-31  Score=214.58  Aligned_cols=211  Identities=26%  Similarity=0.405  Sum_probs=180.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ...++.+|...|.+++|  ++++|++++.||.|++||.. .......+.+|...|.+++|+|+++.+++++.|+.|++||
T Consensus       168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence            44566789999999999  56799999999999999998 4566778888999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCC-CEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE--ec
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SS  172 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~  172 (247)
                      +.+++....+..|...+.+++|+|++ .++++++  .|+.|++||+++++.+..+. +...+.+++|+|++..+++  |+
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~  324 (401)
T 4aez_A          246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF  324 (401)
T ss_dssp             TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT
T ss_pred             CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec
Confidence            99998888888899999999999966 5666654  79999999999999888776 4578999999999999998  55


Q ss_pred             CCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      .||.|++||+.+++..... ...+...|..++|+|++++|++++.||.|++||....+.+.
T Consensus       325 ~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            8999999999887654443 33566789999999999999999999999999998876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-31  Score=220.31  Aligned_cols=206  Identities=21%  Similarity=0.384  Sum_probs=177.4

Q ss_pred             EEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCC----------CeEEEEEecccCCeEEEEECCCCC-EEEEEc
Q psy4393          21 FTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD----------GKFEKTISGHKLGISDVAWSSDSR-LLVSGS   88 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   88 (247)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|+...          ......+.+|...+.+++|+|++. .|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445579999999999997 67899999999999999875          456677888999999999999988 999999


Q ss_pred             CCCeEEEEECCCceE-------EEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCC---eEEEeecCCCCCeE
Q psy4393          89 DDKTLKIWELSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG---KCLKTLPAHSDPVS  157 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~  157 (247)
                      .||.|++|++.++..       ...+..|...|.+++|+| ++.++++++.|+.|++||++++   ..+..+..|...++
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987321       345668888999999999 7789999999999999999987   46667778999999


Q ss_pred             EEEECCCCC-EEEEecCCCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCC
Q psy4393         158 AVHFNRDGS-LIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKV  227 (247)
Q Consensus       158 ~~~~~~~~~-~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  227 (247)
                      +++|+|++. ++++|+.||.|++||+++. +.+..+ ..+...|.+++|+|+++ +|++++.||.|+|||.+.
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999987 7889999999999999984 334433 34567899999999995 688999999999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-32  Score=225.50  Aligned_cols=210  Identities=21%  Similarity=0.376  Sum_probs=164.8

Q ss_pred             EEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          20 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ...+.+|.+.|++++|+| ++++|++|+.||.|++||+..+........+  ...+.+++|+|++++|++++.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            345568999999999998 6889999999999999999765544333332  3357889999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEe---ecCCCCCeEEEEECCCCCEEEEec
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      |++. +.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++.+....   ...|..+|.+++|+|++.+|++++
T Consensus       237 d~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          237 NMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             ESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            9864 55667888999999999999875 788999999999999988664333   356888999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeee------------------------------------------------------------c
Q psy4393         173 YDGLCRIWDTASGQCLKTL------------------------------------------------------------I  192 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~------------------------------------------------------------~  192 (247)
                      .||.|++||+.+++....+                                                            .
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            9999999998764321110                                                            0


Q ss_pred             cCCCCCeEEE-EECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         193 DDDNPPVSFV-KFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       193 ~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ..+...|.++ +|+|+|++|++|+ |+.|+|||.+++++.
T Consensus       396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            1122234444 6999999998876 889999999887664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=222.04  Aligned_cols=211  Identities=21%  Similarity=0.363  Sum_probs=184.4

Q ss_pred             EEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCe------EEEE---EecccCCeEEEEECCC-CCEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK------FEKT---ISGHKLGISDVAWSSD-SRLLVSG   87 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~   87 (247)
                      ....+.+|...|.+++|+|+ +++|++++.||.|++||..++.      ....   ...|...|.+++|+|+ +..++++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            45667789999999999998 8899999999999999998765      2222   3567788999999998 7899999


Q ss_pred             cCCCeEEEEECCCceEEEEEecC------CccEEEEEEcCCC-CEEEEeeCCC---CEEEEECCCC-eEEEeec-CCCCC
Q psy4393          88 SDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQS-NLIVSGSFDE---SVRIWDVRTG-KCLKTLP-AHSDP  155 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~-~~~~~~~-~~~~~  155 (247)
                      +.|+.|++||+++++.+..+..+      ...+.+++|+|++ .++++++.++   .|++||++++ ..+..+. .|...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            99999999999999888888766      6789999999997 6899999998   9999999986 5666777 89999


Q ss_pred             eEEEEECC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC-CEEEEEEcCCeEEEEECCCcce
Q psy4393         156 VSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       156 i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +.+++|+| ++.+|++++.||.|++||+.+++.+..+. .+...+..++|+|++ ++|++++.||.|++||.+....
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            99999999 89999999999999999999988777654 445678899999999 8999999999999999987653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.8e-31  Score=212.93  Aligned_cols=209  Identities=23%  Similarity=0.458  Sum_probs=175.2

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC---CCEEEEEcCCCeEEEEECCC
Q psy4393          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        25 ~h~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~  100 (247)
                      +|...|.+++|+| ++.+|++++.||.|++||..+++....+. +...+.++.|+|.   +..+++++.++.|++||+.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            4999999999999 77899999999999999999888777665 5677999999984   45999999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCe-EEEee---------------cCCCCCeEEEEECC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK-CLKTL---------------PAHSDPVSAVHFNR  163 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~  163 (247)
                      ++....+..|...+.+++|+|++. ++++++.||.|++||++.+. .+..+               ..|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            988888999999999999999988 68999999999999998765 23333               46778999999999


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeee----------------------------------------------eccCCCC
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKT----------------------------------------------LIDDDNP  197 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------------------------------~~~~~~~  197 (247)
                      ++.+|++++.||.+++||+.+++....                                              ....+..
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence            999999999999999999987543211                                              1133567


Q ss_pred             CeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      .|.+++|+|++++|++++.||.|++||.+..+++...
T Consensus       336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            8999999999999999999999999999988776543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.7e-31  Score=217.95  Aligned_cols=210  Identities=28%  Similarity=0.498  Sum_probs=179.1

Q ss_pred             eEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeE-------EEEEecccCCeEEEEECC-CCCEEEEEc
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSS-DSRLLVSGS   88 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~   88 (247)
                      ....++.+|...|.+++|+|++. +|++|+.||.|++|++..+..       ...+.+|...|.+++|+| ++..+++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            34466778999999999999998 999999999999999976321       345667888999999999 678899999


Q ss_pred             CCCeEEEEECCCc---eEEEEEecCCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECC
Q psy4393          89 DDKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNR  163 (247)
Q Consensus        89 ~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~  163 (247)
                      .|+.|++||++++   +....+..|...+.+++|+|++. ++++|+.||.|++||++. ...+..+..|...|.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999876   46667778999999999999887 789999999999999997 556778888999999999999


Q ss_pred             CCC-EEEEecCCCeEEEEeCCCc--------------eeeeeeccCCCCCeEEEEECCCCC-EEEEEEcCCeEEEEECCC
Q psy4393         164 DGS-LIVSSSYDGLCRIWDTASG--------------QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSKV  227 (247)
Q Consensus       164 ~~~-~l~~~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  227 (247)
                      ++. +|++++.|+.|++||+...              +.+. ....+...|..++|+|+++ +|++++.||.|+||+...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            985 7899999999999999862              2222 2334566799999999999 899999999999999865


Q ss_pred             c
Q psy4393         228 V  228 (247)
Q Consensus       228 ~  228 (247)
                      .
T Consensus       411 ~  411 (430)
T 2xyi_A          411 N  411 (430)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.7e-32  Score=214.95  Aligned_cols=209  Identities=18%  Similarity=0.315  Sum_probs=172.2

Q ss_pred             EEEEecCCCCeEEEE------ECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccC----CeEEEE----ECCCCCEE
Q psy4393          20 KFTLAGHTKAVSSVK------FSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKL----GISDVA----WSSDSRLL   84 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~------~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l   84 (247)
                      ...+.+|...|.++.      |+|++++|++++.||.|++||...+. ....+..+..    .+.++.    |+|+++.+
T Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l  183 (357)
T 3i2n_A          104 VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV  183 (357)
T ss_dssp             SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE
T ss_pred             EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE
Confidence            345668999999995      57899999999999999999998775 5566655443    688888    78999999


Q ss_pred             EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCCCeEEEeec-----CCCCCe
Q psy4393          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRTGKCLKTLP-----AHSDPV  156 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~i  156 (247)
                      ++++.|+.|++||+++++... ...+...+.+++|+|   ++..+++++.|+.|++||+++++....+.     .|...|
T Consensus       184 ~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v  262 (357)
T 3i2n_A          184 CAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV  262 (357)
T ss_dssp             EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred             EEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence            999999999999999887644 455778899999999   89999999999999999998776544443     899999


Q ss_pred             EEEEECCCCC-EEEEecCCCeEEEEeCCCce-------------------eeeeeccCCCCCeEEEEECCCCCEEE-EEE
Q psy4393         157 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-------------------CLKTLIDDDNPPVSFVKFSPNGKYIL-AAT  215 (247)
Q Consensus       157 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~  215 (247)
                      .+++|+|++. ++++++.||.|++||++.+.                   .+.. ...+..+|.+++|+|++++|+ +++
T Consensus       263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~s~~  341 (357)
T 3i2n_A          263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN-VTLSTQPISSLDWSPDKRGLCVCSS  341 (357)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE-EECCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec-cccCCCCeeEEEEcCCCCeEEEEec
Confidence            9999999998 89999999999999987543                   2222 234567899999999999998 799


Q ss_pred             cCCeEEEEECCCcce
Q psy4393         216 LDNTLKLWDSKVVTP  230 (247)
Q Consensus       216 ~dg~i~vwd~~~~~~  230 (247)
                      .||.|++||....+.
T Consensus       342 ~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          342 FDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TTSEEEEEEECC---
T ss_pred             CCCcEEEEECCCccc
Confidence            999999999876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-31  Score=204.92  Aligned_cols=210  Identities=26%  Similarity=0.390  Sum_probs=178.9

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...+.+|...|.++.|  +++++++++.||.|++||  .+.....+..|...+.++.|.| +++.+++++.|+.+++||.
T Consensus        97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  172 (313)
T 3odt_A           97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN  172 (313)
T ss_dssp             -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence            3456789999999999  678999999999999999  6677778888999999999988 8999999999999999993


Q ss_pred             CCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393          99 SSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus        99 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                        .+....+.. +...+.++.|+|++. +++++.|+.|++||+++++.+..+..|..++.+++|+|++ .+++++.||.|
T Consensus       173 --~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v  248 (313)
T 3odt_A          173 --DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV  248 (313)
T ss_dssp             --TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred             --CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence              455566666 788899999999988 9999999999999999999999999999999999999999 58899999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++||+.+++....+. .+..++..++|+|+++ +++++.||.|++||.+............+
T Consensus       249 ~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~  308 (313)
T 3odt_A          249 RIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKGE  308 (313)
T ss_dssp             EEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred             EEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence            999999998777664 3456899999999998 66799999999999998776555444333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-31  Score=219.09  Aligned_cols=207  Identities=17%  Similarity=0.153  Sum_probs=177.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEec-------------------------------------
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISG-------------------------------------   67 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~-------------------------------------   67 (247)
                      .++.+++|+|+|++|+++ .++.|++||..+++   ....+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999976655 57899999998887   4444332                                     


Q ss_pred             -----------------ccCCeEEEEECCCCCEE-EEEcCCCeEEEEECC--CceEEEEEe--cCCccEEEEEEcCCCCE
Q psy4393          68 -----------------HKLGISDVAWSSDSRLL-VSGSDDKTLKIWELS--SGKCLKTLK--GHSNYVFCCNFNPQSNL  125 (247)
Q Consensus        68 -----------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~  125 (247)
                                       |...|.+++|+|++++| ++++.|+.|++||+.  +++....+.  .+...+.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                             22269999999999996 889999999999998  777777765  55678999999999999


Q ss_pred             EEEeeCCCCEEEEECCCCeEEE----eecCCCCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCC
Q psy4393         126 IVSGSFDESVRIWDVRTGKCLK----TLPAHSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (247)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (247)
                      +++++.++.+++|++.++....    .+..|...|.+++|+|+   +.+|++++.|+.|++||+.+++.+..+...+...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998876543    66778899999999999   9999999999999999999988777766677788


Q ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         199 VSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       199 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      |.+++|+ ++++|++++.|+.|++||.++++++..+..
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence            9999999 999999999999999999999887776653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-30  Score=208.39  Aligned_cols=203  Identities=16%  Similarity=0.203  Sum_probs=162.8

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS  100 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~  100 (247)
                      +...|...|.+++|+|+|++|++|+.++ +++|+...........  ...+..+.+.++++.+ ++++.++.|++||..+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4567999999999999999999987665 7899987765544332  2357778888888877 5677889999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCC-----------------------------------CEEEE--eeCCCCEEEEECCCC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQS-----------------------------------NLIVS--GSFDESVRIWDVRTG  143 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~v~d~~~~  143 (247)
                      ++.+..+. +...+.++.++++.                                   ..+++  |+.+|.|++||++++
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            98887776 44567777776542                                   23444  678899999999876


Q ss_pred             e----------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCe-EEEEeCCCceeeeeeccC-CCCCeEEEEEC
Q psy4393         144 K----------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFS  205 (247)
Q Consensus       144 ~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~v~~~~~s  205 (247)
                      .                .+..+..|..+|.+++|+|++.+|++|+.|+. |++||+++++.+..+... +...|.+++|+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            5                16778899999999999999999999999998 999999999988887633 77889999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCc
Q psy4393         206 PNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       206 ~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      |++++|++++.|+.|++||.+..
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCCEEEEEECCCEEEEEEccCC
Confidence            99999999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-31  Score=211.61  Aligned_cols=209  Identities=9%  Similarity=0.020  Sum_probs=179.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---EEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEEC-
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL-   98 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~-   98 (247)
                      .+|.+.|.+++|+|++++|++++.||.|++|+...+.   ....+..|...|.+++|+|+++ .+++++.|+.|++||+ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            4799999999999999999999999999999997765   2344557888999999999999 9999999999999999 


Q ss_pred             CCceEEEEEec--CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---------CeEEEeecCCCCCeEEEEECCCCCE
Q psy4393          99 SSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---------GKCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        99 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      .+++. ..+..  |...|.+++|+| +..+++++.|+.|++||+++         ++.+..+. |...+.+++|+|++  
T Consensus        88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--  162 (342)
T 1yfq_A           88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred             cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence            77754 66777  899999999999 99999999999999999987         66666665 78899999999987  


Q ss_pred             EEEecCCCeEEEEeCCC-cee-eeeeccCCCCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCc------ceEEEEccC
Q psy4393         168 IVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVV------TPAIICSTP  237 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~  237 (247)
                      +++++.++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++||.+..      .+...+..+
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            88999999999999987 543 2333445567899999999 9999999999999999999876      555555554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-31  Score=230.99  Aligned_cols=210  Identities=28%  Similarity=0.392  Sum_probs=181.8

Q ss_pred             eEEEEEecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCC--CCEEEEEcCCC
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   91 (247)
                      ....++.+|.++|.+++|+|+  +++|++|+.||.|++||..++.  ....+..|...|.+++|+|+  ++.+++++.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            344567789999999999988  9999999999999999998876  55667788999999999999  99999999999


Q ss_pred             eEEEEECCCce--EEEEEecCCccEEEEEEcC-------------CCCEEEEeeCCCCEEEEECCCC----eEEEeecCC
Q psy4393          92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTG----KCLKTLPAH  152 (247)
Q Consensus        92 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~  152 (247)
                      .|++||+.++.  ....+..|...+.++.|+|             ++..+++|+.||.|++||++++    .....+..|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            99999998763  3445678889999999999             5899999999999999999877    456677889


Q ss_pred             CCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceee--eee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCL--KTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       153 ~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~--~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ..+|.+++|+|+   +.++++++.||.|++||+.+++..  ...  ...+...+.+++|+|++++|++++.||.|++||.
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            999999999999   899999999999999999876421  111  2235567889999999999999999999999998


Q ss_pred             CC
Q psy4393         226 KV  227 (247)
Q Consensus       226 ~~  227 (247)
                      +.
T Consensus       284 ~~  285 (753)
T 3jro_A          284 NL  285 (753)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.3e-30  Score=200.88  Aligned_cols=209  Identities=23%  Similarity=0.469  Sum_probs=171.6

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe---------------------------------
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---------------------------------   66 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---------------------------------   66 (247)
                      .+.+.+|...|++++|+|++++|++|+.||.|++|+..+++....+.                                 
T Consensus        60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC
Confidence            34456788899999999999999999999999999988776544332                                 


Q ss_pred             --------cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE----EEEEecCCccEEEEEEcCCCCE---EEEeeC
Q psy4393          67 --------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNFNPQSNL---IVSGSF  131 (247)
Q Consensus        67 --------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---l~~~~~  131 (247)
                              +|...+..+.+.++++.+++++.|+.|++||+.+++.    ......+...+..+.+.|.+..   +++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  219 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  219 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence                    3455677788899999999999999999999987642    3344566778899999987653   346678


Q ss_pred             CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe--cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC
Q psy4393         132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      ++.|++||.+......... +...+..+.++|++..++++  +.|+.|++||+.+++.+..+. .|...|.+++|+|+++
T Consensus       220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence            8999999999887665544 45678999999999887664  479999999999999887764 5667899999999999


Q ss_pred             EEEEEEcCCeEEEEECCCcce
Q psy4393         210 YILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +|++|+.||+|+|||+.+.+|
T Consensus       298 ~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             CEEEEETTTEEEEECCSCCCC
T ss_pred             EEEEEecCCeEEEEECCCCCC
Confidence            999999999999999988765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.7e-31  Score=208.95  Aligned_cols=212  Identities=14%  Similarity=0.138  Sum_probs=180.1

Q ss_pred             EEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEec-CCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGA-YDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..+.+|...|.+++|+|+++ +|++++.||.|++|+. .++.. ..+.+  |...|.+++|+| ++.+++++.|+.|++|
T Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            33458999999999999999 9999999999999999 77654 66677  889999999999 9999999999999999


Q ss_pred             ECCC---------ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-Ce--EEEeecCCCCCeEEEEECC-
Q psy4393          97 ELSS---------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GK--CLKTLPAHSDPVSAVHFNR-  163 (247)
Q Consensus        97 d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~--~~~~~~~~~~~i~~~~~~~-  163 (247)
                      |+.+         ++.+..+. +...+.+++|+|++  +++++.++.|++||++. +.  .......+...+.+++|+| 
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred             cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence            9987         65555555 77889999999987  99999999999999998 44  2334456778999999999 


Q ss_pred             CCCEEEEecCCCeEEEEeCCCc------eeeeeeccCC--------CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASG------QCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ++.++++++.||.+++|++...      +....+..+.        ...+.+++|+|++++|++++.||.|++||.++.+
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            9999999999999999999876      4444443221        2389999999999999999999999999999998


Q ss_pred             eEEEEccC
Q psy4393         230 PAIICSTP  237 (247)
Q Consensus       230 ~~~~~~~~  237 (247)
                      ++..+..+
T Consensus       285 ~~~~~~~~  292 (342)
T 1yfq_A          285 KIKNFAKF  292 (342)
T ss_dssp             EEEECCCC
T ss_pred             Hhhhhhcc
Confidence            88777665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.1e-30  Score=220.69  Aligned_cols=206  Identities=16%  Similarity=0.245  Sum_probs=186.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----eEEEEEecccCC-eEEEEECC--CCCEEEEEcCCCeEEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLG-ISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~v~d   97 (247)
                      .|.+.|.+++|+|+|++|++++ ++.|++|+..++    +....+.+|... |.+++|+|  ++++|++++.|+.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            5889999999999999999987 889999999988    788899999999 99999999  999999999999999999


Q ss_pred             CCCc--------eEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeecCCCCCeEEEEECCCC
Q psy4393          98 LSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus        98 ~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                      +.++        .....+..+...+.+++|+|+++++++++.+    +.|++||  .++.+..+..|...|.+++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            9754        5667778889999999999999999999887    6788888  567788889999999999999999


Q ss_pred             C-EEEEecCCCeEEEEeCCCceeeeeeccCCCC---CeEEEEECCC-CCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         166 S-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSPN-GKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       166 ~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      . .+++++.|+.+++||+.+++....+.. +..   .+.+++|+|+ +++|++++.||.|++||.++.+++..+
T Consensus       173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             CcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            8 899999999999999999887776543 445   7999999999 999999999999999999998888777

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-30  Score=211.90  Aligned_cols=201  Identities=25%  Similarity=0.458  Sum_probs=174.0

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCe----EEEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECCCc-
Q psy4393          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-  101 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-  101 (247)
                      ....++++|+...++ +++.+|.|++|+.....    ....+.+|...|.+++|+| ++++|++++.|+.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            344578888776544 47889999999986542    2234667899999999999 8999999999999999999887 


Q ss_pred             ------eEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEec
Q psy4393         102 ------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       102 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                            +.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++.+..+  ..|...|.+++|+|++.+|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  5567888999999999999998 69999999999999999999999888  78999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEEEEE---EcCCeEEEEECCCcc
Q psy4393         173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDSKVVT  229 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~  229 (247)
                      .||.|++||+++++.+..+ ..+....+..+.|+|++++|++|   +.|+.|++||.+...
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            9999999999999887776 33334447889999999999999   789999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=224.73  Aligned_cols=207  Identities=15%  Similarity=0.101  Sum_probs=170.9

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEecccCCeEEE--EECCCC-CEEEEEcCCCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDV--AWSSDS-RLLVSGSDDKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~   96 (247)
                      .++.+|...|++++|++++ .|++|+.||.|++||+.++. ....+.+|...|.++  .|+|++ .+|++++.|++|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence            4567899999999999864 79999999999999998653 345678899999999  578887 899999999999999


Q ss_pred             ECCCceEEEEEecCCc--cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393          97 ELSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      |+++++....+.+|..  .+.+++|+|++..+++++.|+.|++||++++.++..+..|.+.|.+++|+|++++|++|+.|
T Consensus       339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            9998776655555542  47789999999999999999999999999988877888899999999999999999999999


Q ss_pred             CeEEEEeCCCce--------------eeeee-----------------------------ccCCCCCeEEEEECCCCC--
Q psy4393         175 GLCRIWDTASGQ--------------CLKTL-----------------------------IDDDNPPVSFVKFSPNGK--  209 (247)
Q Consensus       175 g~i~v~d~~~~~--------------~~~~~-----------------------------~~~~~~~v~~~~~s~~~~--  209 (247)
                      |.|++||+....              .+..+                             ...+...|.+++|+|+++  
T Consensus       419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            999999864310              00000                             112345678899999964  


Q ss_pred             -EEEEEEcCCeEEEEECCCc
Q psy4393         210 -YILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       210 -~l~~~~~dg~i~vwd~~~~  228 (247)
                       ++++|+.||.|+||+.+..
T Consensus       499 ~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          499 KCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TEEEEECTTSEEEEEECSCC
T ss_pred             HHHHhhccCceEEEEEcccc
Confidence             9999999999999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=1.5e-29  Score=231.24  Aligned_cols=208  Identities=30%  Similarity=0.526  Sum_probs=187.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECC--CCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~   96 (247)
                      ...++.+|...|.+++|+|++++|++++.||.|++||..+++....+.+|...|.+++|+|  ++..+++++.|+.|++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            4556778999999999999999999999999999999999999999999999999999999  55689999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee---------------------------
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---------------------------  149 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---------------------------  149 (247)
                      |+.+++....+.+|...|.+++|+|++..+++++.||.|++||+++++....+                           
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            99999999999999999999999999999999999999999999876543322                           


Q ss_pred             ----------------------------cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEE
Q psy4393         150 ----------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF  201 (247)
Q Consensus       150 ----------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~  201 (247)
                                                  ..|...+.+++|+|++.++++++.+|.+++||+.+++....+. .+...|.+
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~  887 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHG  887 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEE
Confidence                                        1456778899999999999999999999999999988776654 56678999


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         202 VKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       202 ~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ++|+|++++|++++.||.|++||...
T Consensus       888 v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          888 VMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEccc
Confidence            99999999999999999999999653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=1.1e-28  Score=201.89  Aligned_cols=217  Identities=23%  Similarity=0.425  Sum_probs=187.2

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      .+.+.+|...|++++|+|+|++|++|+.||.|++||..+++....+.+|...+.++.|+  +..+++++.|+.+++||..
T Consensus       140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred             EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeec
Confidence            34556788899999999999999999999999999999999999999999999988774  6799999999999999987


Q ss_pred             Cc-eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe----EEEeecCCCCCeEEEEECCCCC-EEEE--e
Q psy4393         100 SG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSDPVSAVHFNRDGS-LIVS--S  171 (247)
Q Consensus       100 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~  171 (247)
                      .. ..+..+.+|...+..+.++|++..+++++.|+.+++||..+++    .+.....|...|.+++|+|++. ++++  |
T Consensus       218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g  297 (420)
T 4gga_A          218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  297 (420)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred             ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence            64 4566788999999999999999999999999999999998765    3455677889999999999765 5544  4


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cCCeEEEEECCCcceEEEEccCCcc
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      +.|+.|++||+.+++....+..  ...+..+.|+|+++.+++++  .||.|+|||.++++++..+..|...
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~  366 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR  366 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred             cCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            5799999999999988776643  34688899999999998876  6899999999999999888877653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.7e-29  Score=205.45  Aligned_cols=200  Identities=26%  Similarity=0.563  Sum_probs=178.1

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.+|.+.|.+++|  ++++|++|+.||.|++||..+++....+.+|...|.+++|++  ..+++++.|+.|++||+
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence            44567789999999999  788999999999999999999999999999999999999974  58999999999999999


Q ss_pred             CCceEE---EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          99 SSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        99 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .++...   ..+.+|...+.++.+  +++.+++|+.|+.|++||+++++.+..+..|...+.++.+  ++.++++|+.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg  316 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  316 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            887644   567788889999988  6789999999999999999999999999999999999998  468999999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      .|++||+++++.+..+. .+...+.+++|  ++++|++|+.||.|++||.+...
T Consensus       317 ~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          317 TIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             CEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             eEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            99999999998777654 45677999988  78899999999999999987665

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-30  Score=204.21  Aligned_cols=197  Identities=11%  Similarity=0.072  Sum_probs=159.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecC---------CCeEEEEEe-cccCCeEEEEECC--CCCEEEEEcCCCeEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFEKTIS-GHKLGISDVAWSS--DSRLLVSGSDDKTLKI   95 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v   95 (247)
                      ..|.++.|+|+   +++++.|+.+++|+..         +++...... +|...|.+++|+|  +++++++++.|+.|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667778887   8899999999999765         333333333 5557899999999  9999999999999999


Q ss_pred             EECCCceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE-EeecC-CCCCeEEEEECCCCCEEEEec
Q psy4393          96 WELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPA-HSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        96 ~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ||+++++...... .+...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            9999988766553 34457899999999999999999999999999999877 67777 999999999999999999999


Q ss_pred             CCCeEEEEeCCCceeeeeecc--CCCCCe--EEEEECCCCCEEEEEEc-CCeEEEEECCCc
Q psy4393         173 YDGLCRIWDTASGQCLKTLID--DDNPPV--SFVKFSPNGKYILAATL-DNTLKLWDSKVV  228 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~--~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~  228 (247)
                       ++.|++||+++.+....+..  .+...+  .+++|+|+|++|++++. |+.|+||+....
T Consensus       234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence             55999999998765543321  111222  46999999999999998 999999987543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.4e-30  Score=204.77  Aligned_cols=211  Identities=23%  Similarity=0.298  Sum_probs=169.5

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEE--CCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~   96 (247)
                      ....+.+|...|.+++|+|++++|++++.||.|++||..+++... +..|...|.+++|  +|+++++++++.|+.|++|
T Consensus        78 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            335677899999999999999999999999999999998887655 5668889999999  8999999999999999999


Q ss_pred             ECCCceEEEEEecCC-----------------------------------------ccEEEEEEcCCCC----EEEEeeC
Q psy4393          97 ELSSGKCLKTLKGHS-----------------------------------------NYVFCCNFNPQSN----LIVSGSF  131 (247)
Q Consensus        97 d~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~----~l~~~~~  131 (247)
                      |+++++.+..+..+.                                         ....++.+.++..    .+++++.
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            998876655544322                                         1123333333332    2899999


Q ss_pred             CCCEEEEECCCC---eEEEeecCCCC------------CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy4393         132 DESVRIWDVRTG---KCLKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN  196 (247)
Q Consensus       132 d~~i~v~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  196 (247)
                      |+.+++||++..   ..+..+..|..            ++.+++|+|++++|++++.||.|++||+.+++.+..+. .+.
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  315 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLD  315 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCS
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCC
Confidence            999999999877   44556666654            79999999999999999999999999999988776654 456


Q ss_pred             CCeEEEEECCCCCEEEEEEcCCeEEEEE---CCCcceE
Q psy4393         197 PPVSFVKFSPNGKYILAATLDNTLKLWD---SKVVTPA  231 (247)
Q Consensus       197 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~~~~~~  231 (247)
                      .+|..++|+|++++|++++.|+..+.|+   .+....+
T Consensus       316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred             CCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence            7899999999999999999987555444   4444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=6.6e-29  Score=203.96  Aligned_cols=205  Identities=25%  Similarity=0.523  Sum_probs=182.1

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+|...|.++.|  +++++++|+.||.|++||..+++....+.+|...|.+++|  +++.+++++.||.|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            356778998887  7899999999999999999999999999999999999998  788999999999999999999999


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEE---EeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      +..+..|...|.++.|++  ..+++++.|+.|++||++++...   ..+..|...+.++++  ++.++++|+.||.|++|
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            999999999999999974  59999999999999999987654   567789999999999  77899999999999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      |+++++.+..+. .+...+.+++|  +++++++|+.||.|++||.+++.++..+..+..
T Consensus       282 d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          282 NTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             ETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             ECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            999998777664 45567888888  468999999999999999999988887776554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.1e-29  Score=205.67  Aligned_cols=210  Identities=32%  Similarity=0.649  Sum_probs=185.3

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ...+.+|.+.|.. +++++|++|++|+.||.|++||..+++....+.+|...|.++.|+  ++.+++++.|+.|++||+.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            3457789887533 355578999999999999999999999999999999999999997  5799999999999999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      +++....+.+|...|.++.++  +..+++++.|+.|++||+++++.+..+..|..++.++.+  ++.++++++.||.|++
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            999999999999999999986  568999999999999999999999999999999999999  6788999999999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ||+++++.+..+. .+...+.+++|  ++.++++++.||.|++||.++.+++..+..+..
T Consensus       264 wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          264 WDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             EEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             EECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            9999988777654 45567888988  789999999999999999999888777665543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.5e-30  Score=210.18  Aligned_cols=192  Identities=13%  Similarity=0.167  Sum_probs=162.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-----CeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      .|...|.+++|+|+|++||+++.||.|++|+...  ....+. |..     .+.+++|+|||++|++|+.||.|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            4578899999999999999999999999999543  445555 554     49999999999999999999999999998


Q ss_pred             Cce-------EEEEE----ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE---EEee-cCCCCCeEEEEECCC
Q psy4393         100 SGK-------CLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTL-PAHSDPVSAVHFNRD  164 (247)
Q Consensus       100 ~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~-~~~~~~i~~~~~~~~  164 (247)
                      ++.       .+..+    .+|...|.+++|+|++  +++++.|+.+++||+..+..   ...+ ..|...|.+++|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            874       35666    5566799999999999  78888999999999987763   2345 3677889999999  


Q ss_pred             CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE--CCCCCEEEEEEcCCeEEEEECC
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +..+|+++ ++.|++||+.+++...... ++...+..++|  +|+++.|++++.||. ++|..+
T Consensus       236 g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            68888887 6999999999877633332 57778999999  999999999999999 999976

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.4e-30  Score=209.05  Aligned_cols=200  Identities=13%  Similarity=0.124  Sum_probs=147.6

Q ss_pred             EecCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeE
Q psy4393          23 LAGHTKAVSSVKFSP--------NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTL   93 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~--------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i   93 (247)
                      +.+|.+.|.+++|+|        |+++||+|+.|++|++||+.++.....+..|...+.+++|+|++. +|++++.|+.|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            468999999999997        889999999999999999988888888888899999999999874 79999999999


Q ss_pred             EEEECCCceEEEEE-------------------------ecCCccEEEEEEc-CCCCEEEEeeCCCCEEEEECCCCeEEE
Q psy4393          94 KIWELSSGKCLKTL-------------------------KGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGKCLK  147 (247)
Q Consensus        94 ~v~d~~~~~~~~~~-------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (247)
                      ++||+.+++.....                         .++...+.++.|. +++..+++++.|+.+++||+..++...
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence            99999876543221                         2455567777775 799999999999999999998876555


Q ss_pred             eecCCCCCeEEE------------------EECC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC
Q psy4393         148 TLPAHSDPVSAV------------------HFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  207 (247)
Q Consensus       148 ~~~~~~~~i~~~------------------~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~  207 (247)
                      .+..+...+..+                  .++|  ++.++++|+.||.|++||+.+++....... +..+|..++|+||
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-~~~~V~svafspd  370 (393)
T 4gq1_A          292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-LGMPIVDFCWHQD  370 (393)
T ss_dssp             ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-CSSCEEEEEECTT
T ss_pred             eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-CCCcEEEEEEcCC
Confidence            544443333222                  2332  344677888999999999998877665543 4568999999999


Q ss_pred             CCEEEEEEcCCeEEEEE
Q psy4393         208 GKYILAATLDNTLKLWD  224 (247)
Q Consensus       208 ~~~l~~~~~dg~i~vwd  224 (247)
                      |++||+++.+| +.+|.
T Consensus       371 G~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          371 GSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             SSEEEEEESSE-EEEEE
T ss_pred             CCEEEEEeCCC-eEEEE
Confidence            99999998766 55554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.7e-28  Score=199.32  Aligned_cols=207  Identities=33%  Similarity=0.612  Sum_probs=185.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ...++.+|.+.|.+++|+  ++++++|+.||.|++||..+++....+.+|...|.++.|+  ++.+++++.|+.|++||+
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            456677899999999997  6799999999999999999999999999999999999995  578999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      .+++.+..+.+|...+.++.+  ++..+++++.|+.|++||+++++.+..+..|...+.++.+  ++.++++++.||.|+
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  302 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR  302 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence            999999999999999999988  6789999999999999999999999999999999999999  788999999999999


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      +||+++++....+. .+...+..+.+  ++++|++++.||.|++||.++.+++..+..
T Consensus       303 i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          303 VWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             EEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             EEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            99999998777654 44556776666  567999999999999999999888877765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-30  Score=210.81  Aligned_cols=205  Identities=12%  Similarity=0.125  Sum_probs=162.0

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----------------------------EEEEEe-cc
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------------FEKTIS-GH   68 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----------------------------~~~~~~-~~   68 (247)
                      +..+.+.-...|.+++|+|||+++|+++.|++|+  |...++                             ....+. .+
T Consensus         7 ~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~   84 (588)
T 2j04_A            7 LLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP   84 (588)
T ss_dssp             EEECSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC
T ss_pred             hcccHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC
Confidence            4445556678999999999999999999999995  322211                             001111 34


Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCc-----cEEEEEEcCCCCEEEEeeCCCCEEEEECCCC
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (247)
                      ...|.+++|+|+|+.|++++.||.+++||.+.  .+..+. |..     .+.+++|+|+|+++++|+.||.|++||+..+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            56799999999999999999999999999644  555555 554     4999999999999999999999999999987


Q ss_pred             e-------EEEee----cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee---eeeccCCCCCeEEEEECCCCC
Q psy4393         144 K-------CLKTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       144 ~-------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      .       .+..+    ..|...|.+++|+|+|  +++++.|+.+++||+.+++..   ..+...+...|..++|+  |+
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence            4       24555    5677899999999999  788888999999999887632   33433555788999999  68


Q ss_pred             EEEEEEcCCeEEEEECCCcceEEE
Q psy4393         210 YILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .||+++ +++|++||.........
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~  260 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSL  260 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEE
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEE
Confidence            888887 79999999988776333

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=196.51  Aligned_cols=196  Identities=15%  Similarity=0.062  Sum_probs=159.1

Q ss_pred             cCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +|.+.|.+++|+|  +++++++++.||.|++||+.+++....... +...+.+++|+|++.++++|+.|+.|++||++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            6778999999999  999999999999999999998887655533 4557999999999999999999999999999998


Q ss_pred             eEE-EEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC---CCCCe--EEEEECCCCCEEEEecC-
Q psy4393         102 KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPV--SAVHFNRDGSLIVSSSY-  173 (247)
Q Consensus       102 ~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i--~~~~~~~~~~~l~~~~~-  173 (247)
                      +.. ..+.. |...|.+++|+|++.++++++ ++.|++||++.++.+..+..   |...+  .+++|+|++++|++++. 
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~  281 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE  281 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence            876 67777 899999999999999999999 45999999998876544433   33333  36999999999999888 


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECC---CCCEEEEEEcCCeEEEEECC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ++.+++|++......-..     .++..+.|++   +.+.+++++.||.+.++-..
T Consensus       282 d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          282 SNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             TTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            999999998654322211     3566788888   88999999999999988543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.7e-27  Score=194.71  Aligned_cols=211  Identities=26%  Similarity=0.453  Sum_probs=177.5

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-eEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ...++.+|...+.++.++  +..|++|+.|+.+++|+.... .....+.+|...+..+.|+|+++.+++++.|+.+++|+
T Consensus       181 ~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence            445677899999988874  679999999999999998753 45567888999999999999999999999999999999


Q ss_pred             CCCce----EEEEEecCCccEEEEEEcCCC-CEEEE--eeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE
Q psy4393          98 LSSGK----CLKTLKGHSNYVFCCNFNPQS-NLIVS--GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        98 ~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      ..+++    .+.....+...|.+++|+|.+ .++++  |+.|+.|++||+++++....+..+ ..+.++.|+|++..+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS  337 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEE
Confidence            98764    345566788899999999965 45554  457999999999999988888765 46888999999998876


Q ss_pred             ec--CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         171 SS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       171 ~~--~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ++  .|+.|++||+.+++.+..+. .|...|.+++|+|||++|++|+.|++|+|||.....|...
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            54  78999999999998887764 5667899999999999999999999999999987766544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.1e-26  Score=186.07  Aligned_cols=216  Identities=15%  Similarity=0.171  Sum_probs=177.6

Q ss_pred             EEEEecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEE
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWE   97 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d   97 (247)
                      ...+..| ..+.+++|+|+|+++ ++++.++.|++||..+++....+..+. .+.+++|+|+++.++ ++..++.|++||
T Consensus        25 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            3445444 468999999999987 566789999999999998888777555 899999999999875 555679999999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecCCC
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg  175 (247)
                      +.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+. .+.+++|+|+++.+ ++++.++
T Consensus       103 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          103 TTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCC
Confidence            9999887777654 457899999999977 678889999999999999888877654 56899999999877 5777889


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE---cCCeEEEEECCCcceEEEEccCCccc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDSKVVTPAIICSTPLNLN  241 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~  241 (247)
                      .|++||+++++....+..  ...+..++|+|++++|++++   .++.|++||.++.+++..+..+..+.
T Consensus       181 ~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  247 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA  247 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEE
T ss_pred             EEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCcc
Confidence            999999999887665532  34678899999999999888   68999999999888777666655443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.8e-27  Score=190.60  Aligned_cols=200  Identities=16%  Similarity=0.218  Sum_probs=160.8

Q ss_pred             CCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-------------------------
Q psy4393          28 KAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-------------------------   81 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------   81 (247)
                      ..+..+++.++++.+ ++++.|+.|++||..+++....+. +...|.++.|+++.                         
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCE
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEec
Confidence            357788899988877 457778999999999988877776 45578888887642                         


Q ss_pred             ----------CEEEE--EcCCCeEEEEECCCce----------------EEEEEecCCccEEEEEEcCCCCEEEEeeCCC
Q psy4393          82 ----------RLLVS--GSDDKTLKIWELSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE  133 (247)
Q Consensus        82 ----------~~l~~--~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  133 (247)
                                ..++.  ++.+|.|++||+.++.                .+..+.+|...|.+++|+|++.++++++.|+
T Consensus       138 ~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          138 RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence                      23333  5778899999998754                1567889999999999999999999999999


Q ss_pred             C-EEEEECCCCeEEEeec-C-CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeee--e------------------
Q psy4393         134 S-VRIWDVRTGKCLKTLP-A-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK--T------------------  190 (247)
Q Consensus       134 ~-i~v~d~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~------------------  190 (247)
                      . |++||+++++.+..+. . |...|.+++|+|++++|++++.|+.|++||+..+....  .                  
T Consensus       218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            8 9999999999999887 4 89999999999999999999999999999997653111  0                  


Q ss_pred             --eccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         191 --LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       191 --~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                        +......+...++|++++++|++++.||.+++|+....
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence              00111222356899999999999999999999997653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1e-26  Score=182.59  Aligned_cols=207  Identities=25%  Similarity=0.448  Sum_probs=167.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ...++||+++ +||+| .|++|++||..+++....+.  +|...|.+++|+|+++++++|+.|+.|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4678999886 66665 59999999999998877765  56677999999999999999999999999999887765544


Q ss_pred             e-----------------------------------------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-
Q psy4393         108 K-----------------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-  145 (247)
Q Consensus       108 ~-----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-  145 (247)
                      .                                         +|...+..+.+.++++++++++.|+.|++||+++++. 
T Consensus       106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            3                                         3444566778888999999999999999999987653 


Q ss_pred             ---EEeecCCCCCeEEEEECCCCCE---EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE--cC
Q psy4393         146 ---LKTLPAHSDPVSAVHFNRDGSL---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LD  217 (247)
Q Consensus       146 ---~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d  217 (247)
                         ......+.+.+.++.++|++..   +++++.++.|++||..........  .....+..+.|+|+++.+++++  .|
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEEcCC
Confidence               3445567788999999997653   346778899999999887765544  3345688899999999988765  78


Q ss_pred             CeEEEEECCCcceEEEEccCCcc
Q psy4393         218 NTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       218 g~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      +.|+|||.++.+++..+..+.+.
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~~  286 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTSR  286 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSSC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCC
Confidence            99999999999999888876653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=4.2e-28  Score=194.96  Aligned_cols=216  Identities=13%  Similarity=0.116  Sum_probs=164.5

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEE-----------eCCCeEEEEecCCCeEE-EE---Ee-----cccCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASS-----------SADKLIKIWGAYDGKFE-KT---IS-----GHKLGISDVAWSS   79 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~-----------~~dg~v~iw~~~~~~~~-~~---~~-----~~~~~v~~~~~~~   79 (247)
                      ...+.+|...|.+++++  ++.++++           +.|+.+++|+....... ..   ..     .+...+..++|+|
T Consensus        66 ~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           66 EFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             EEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             EEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence            34567788888888765  4555554           35778999987543221 11   11     1234578899999


Q ss_pred             CCCEEEEE--cCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe--ecCCCCC
Q psy4393          80 DSRLLVSG--SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT--LPAHSDP  155 (247)
Q Consensus        80 ~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~  155 (247)
                      ||++++++  +.|+.|++||+++++.+..+. +...|.+++|+|+++++++++. +.+.+|+..+++.+..  ...|...
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCC
Confidence            99987654  468999999999999888776 6677999999999999999885 5577777777765543  3467778


Q ss_pred             eEEEEECCCCCEEEEecCCC----eEEEEeCCCceeee---eeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         156 VSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQCLK---TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.+++|+|++..+++++.++    .+.+||+.......   .....+..+|.+++|+|||++||+|+.|+.|+|||.++.
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            99999999999999998877    68889887654321   223455678999999999999999999999999999999


Q ss_pred             ceEEEE-ccCCc
Q psy4393         229 TPAIIC-STPLN  239 (247)
Q Consensus       229 ~~~~~~-~~~~~  239 (247)
                      +++..+ ..+..
T Consensus       302 ~~~~~~~~gH~~  313 (365)
T 4h5i_A          302 SMSKIFKQAHSF  313 (365)
T ss_dssp             EEEEEETTSSSS
T ss_pred             cEEEEecCcccC
Confidence            988775 44444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.7e-28  Score=199.09  Aligned_cols=204  Identities=17%  Similarity=0.196  Sum_probs=149.1

Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCCeEEEE-----EecccCCeEEEEECC--------CCCEEEEEcCCCeEEEEECCC
Q psy4393          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----ISGHKLGISDVAWSS--------DSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      .+.+++.+|++++.|++|++||...+.....     +.+|...|.+++|+|        ++++|++++.|++|++||+.+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            3344566899999999999999987765432     457899999999987        788999999999999999988


Q ss_pred             ceEEEEEecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEee-------------------------cCCCC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL-------------------------PAHSD  154 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-------------------------~~~~~  154 (247)
                      +.....+..+...+.+++|+|++ .++++++.|+.|++||+++++.....                         ..|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            88777788888999999999987 47999999999999999887543221                         24556


Q ss_pred             CeEEEEEC-CCCCEEEEecCCCeEEEEeCCCceeeeeeccC------------------CCCCeEEEEECC--CCCEEEE
Q psy4393         155 PVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------------DNPPVSFVKFSP--NGKYILA  213 (247)
Q Consensus       155 ~i~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~~v~~~~~s~--~~~~l~~  213 (247)
                      .+.++.|. |++..+++++.|+.+++||+..++....+...                  ....+. ..|+|  ++.++++
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATA  334 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEE
Confidence            67788876 79999999999999999999876543332111                  011112 22333  3446677


Q ss_pred             EEcCCeEEEEECCCcceEEEEccCC
Q psy4393         214 ATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       214 ~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      |+.||.|++||...+.+......+.
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCC
Confidence            8889999999999887766554443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=4.6e-27  Score=186.01  Aligned_cols=172  Identities=22%  Similarity=0.381  Sum_probs=149.3

Q ss_pred             eEEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCC---------eEEEEEecccCCeEEEEECCC--CCEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSD--SRLL   84 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l   84 (247)
                      .....+.+|...|.+++|+|  ++++|++++.||.|++||...+         +....+..|...|.+++|+|+  ++++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            45566778999999999999  6999999999999999999776         456677888999999999999  9999


Q ss_pred             EEEcCCCeEEEEECCCceE------------------------------------------------------------E
Q psy4393          85 VSGSDDKTLKIWELSSGKC------------------------------------------------------------L  104 (247)
Q Consensus        85 ~~~~~d~~i~v~d~~~~~~------------------------------------------------------------~  104 (247)
                      ++++.|+.|++||+.+++.                                                            .
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            9999999999999865321                                                            3


Q ss_pred             EEEecCCccEEEEEEcCCC----CEEEEeeCCCCEEEEECCCC-------------------------------------
Q psy4393         105 KTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVRTG-------------------------------------  143 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~-------------------------------------  143 (247)
                      ..+.+|...|.+++|+|++    .++++++.||.|++||++.+                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            3445678889999999998    89999999999999999864                                     


Q ss_pred             ---------eEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeee
Q psy4393         144 ---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK  189 (247)
Q Consensus       144 ---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  189 (247)
                               +.+..+..|...|++++|+|++++|++++.||.|++||+.+++...
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence                     5566778899999999999999999999999999999998875444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.9e-25  Score=180.52  Aligned_cols=209  Identities=18%  Similarity=0.222  Sum_probs=172.5

Q ss_pred             CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEE
Q psy4393          27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ...+.+++|+|++++|+++ ..++.|++||..+++....+.. ...+.+++|+|+++.+ ++++.++.|++||+.+++..
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            3489999999999988654 4679999999998888777664 4468999999999977 68888999999999999888


Q ss_pred             EEEecCCccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec---CCCeEEEE
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIW  180 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~  180 (247)
                      ..+..+. .+..+.|+|+++.+ ++++.++.|++||+++++....+.. ...+.+++|+|+++++++++   .++.|.+|
T Consensus       152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            7777654 46889999999877 5677889999999999988777654 45788999999999998887   68999999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEE-EEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      |+.+++.+..+..+  ..+..++|+|++++| ++++.|+.|++||..+.+.+..+.....+
T Consensus       230 d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          230 DTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             ETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            99998877665433  346889999999988 55678999999999988877666555443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-27  Score=208.38  Aligned_cols=198  Identities=12%  Similarity=0.217  Sum_probs=165.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      .|...|.+++|+| |++|++++.|+.|++||+.+++....+. +...|++++|+|+++++++++.||.|++||+++++..
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            5788999999999 8899999999999999999888877775 6678999999999999999999999999999987653


Q ss_pred             -----------EEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC------------------CC
Q psy4393         105 -----------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------SD  154 (247)
Q Consensus       105 -----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------~~  154 (247)
                                 ..+++|.+.|.+++|+|+ +..+++|+.|+.+ +||+++++.+..+..|                  ..
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence                       123567788999999996 5789999999999 9999999988777655                  46


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeee--ec----c-----------CCCCCeEEEEEC----CCC-CEEE
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT--LI----D-----------DDNPPVSFVKFS----PNG-KYIL  212 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~----~-----------~~~~~v~~~~~s----~~~-~~l~  212 (247)
                      .|.+++|+|+|.+|++++.||.|++||+++++.+..  +.    .           .+..+|..++|+    |++ .+|+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~  292 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI  292 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence            799999999999999999999999999998876543  21    1           123468999994    554 4667


Q ss_pred             EEEcC-----CeEEEEEC
Q psy4393         213 AATLD-----NTLKLWDS  225 (247)
Q Consensus       213 ~~~~d-----g~i~vwd~  225 (247)
                      +|+.|     +.+.+|+.
T Consensus       293 sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          293 SHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEECSTTSSCCCEEEEEE
T ss_pred             eCCCCCCCCCceEEEEec
Confidence            77665     37889983

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.9e-26  Score=186.30  Aligned_cols=211  Identities=10%  Similarity=0.071  Sum_probs=177.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCce
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGK  102 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~  102 (247)
                      .+|.+.|.+++|+|+++++++++.|+.|++||..+++....+..+...+.+++|+|+++.++ +++.++.|++||+.+++
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            46888999999999999999999999999999998888888888888899999999999885 55579999999999988


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEee--------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecC
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGS--------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSY  173 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~  173 (247)
                      .+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+++++.+..+ .+...+.+++|+|+++.+ ++++.
T Consensus       246 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          246 EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT
T ss_pred             EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC
Confidence            87776654 4588999999999999887        4889999999998876655 334578899999999754 66689


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc---------------CCeEEEEECCCcceEEEEccCC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---------------DNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++.+.+||+.+++....+.  ....+..++|+|++++|++++.               ||.|++||..+.+.+..+....
T Consensus       324 ~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~  401 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN  401 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS
T ss_pred             CCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC
Confidence            9999999999888766553  3456889999999999998886               5799999998887766655433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=7.2e-26  Score=185.31  Aligned_cols=208  Identities=12%  Similarity=0.107  Sum_probs=172.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-----EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-----ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      ..+.+++|+|++.++++++.++.|++||..+++....     +.+|...+.+++|+|++..+++++.++.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            4566999999777788888889999999998877653     33567789999999999999999999999999999998


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec--------C
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--------Y  173 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~  173 (247)
                      ....+..+...+.+++|+|+++.+++ ++.++.|++||+++++.+..+..+ ..+.+++|+|+++.+++++        .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence            88888888888999999999998854 457899999999999888777664 4589999999999998887        4


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEE-EEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      |+.|++||+.+++.......  ...+..++|+|+++.+ ++++.|+.|++||.++.+.+..+....
T Consensus       282 dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~  345 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD  345 (433)
T ss_dssp             CEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC
Confidence            88999999998876655422  2357889999999866 555789999999999877666555433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=4.6e-25  Score=180.14  Aligned_cols=204  Identities=18%  Similarity=0.183  Sum_probs=163.8

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC--eEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLK   94 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~   94 (247)
                      ..+.+|...|.+++|+|+|++|++++.++   .|++||..+++.. .+..+...+.+++|+|||+.|+ +++.++  .|+
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            34557889999999999999999988775   9999999887764 4666777899999999999887 666555  599


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      +||+.+++. ..+..+...+.++.|+|+++.+++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus       251 ~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          251 VMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence            999988765 456677788999999999999888876 44  577889987763 3445566778899999999999887


Q ss_pred             cCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCCcce
Q psy4393         172 SYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKVVTP  230 (247)
Q Consensus       172 ~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~  230 (247)
                      +.+   ..|.+||+.+++.. .+.. + ..+..++|+|||++|++++.++   .|.+||......
T Consensus       329 ~~~~g~~~i~~~d~~~~~~~-~l~~-~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGVQ-VLSS-T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             EECSSCEEEEEEETTTCCEE-ECCC-S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ECcCCceEEEEEECCCCCEE-EecC-C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            764   58999999988753 3322 2 2788999999999999988776   899999875544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=3.5e-26  Score=178.41  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=129.6

Q ss_pred             EEEEEecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEecCCCeEEEEEeccc---CCeEEEEECCCCCEE--------
Q psy4393          19 LKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSRLL--------   84 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l--------   84 (247)
                      ...++.+|...++.++|+|   ++++|++++.|++|++||..+++....+.+|.   ..+.+++|+|+|+++        
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence            4445567888888888888   66889999999999999999999999987654   357778999999876        


Q ss_pred             ----EEEcCCCeEEEEECCCceEEEEE-----ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC
Q psy4393          85 ----VSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP  155 (247)
Q Consensus        85 ----~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  155 (247)
                          ++++.|+++++||..+++.+..+     .+|...+.+..++  +.++++++.|+.|+|||+++++.+..+..|...
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                56778999999999999877654     2444444433333  778999999999999999999999999888765


Q ss_pred             e-EEEEECCCCCEEEEecCCCeEEEEeC
Q psy4393         156 V-SAVHFNRDGSLIVSSSYDGLCRIWDT  182 (247)
Q Consensus       156 i-~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (247)
                      + .+++|+|||++|++|+.|++|++||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4 46899999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=2e-23  Score=170.38  Aligned_cols=207  Identities=12%  Similarity=0.091  Sum_probs=161.0

Q ss_pred             EEEEecCCCCeEEEEECC--------------CCCEEEEEeCC------CeEEEEecCCCeEEEEEecccCCeEEEEECC
Q psy4393          20 KFTLAGHTKAVSSVKFSP--------------NGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGISDVAWSS   79 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~--------------~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~   79 (247)
                      ..++.+|...+..+++++              .+..++.++.+      +.|++||... .....+..|...+.+++|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Sp  188 (415)
T 2hqs_A          110 QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSP  188 (415)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECT
T ss_pred             eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcC
Confidence            345667777776666654              25566665544      7999999864 44566777888999999999


Q ss_pred             CCCEEEEEcCCC---eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCC--EEEEECCCCeEEEeecCCC
Q psy4393          80 DSRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDES--VRIWDVRTGKCLKTLPAHS  153 (247)
Q Consensus        80 ~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~v~d~~~~~~~~~~~~~~  153 (247)
                      +|+.|++++.++   .|++||+.+++.. .+..+...+.+++|+|+++.++ +++.++.  |++||+.+++. ..+..+.
T Consensus       189 dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  266 (415)
T 2hqs_A          189 DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR  266 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence            999999998875   9999999988765 4666777899999999999887 5665554  99999998765 5666778


Q ss_pred             CCeEEEEECCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCC
Q psy4393         154 DPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKV  227 (247)
Q Consensus       154 ~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~  227 (247)
                      ..+.+++|+|+|+.|++++. ++  .|.+||+.+++... + ..+...+..++|+|||++|++++.+   +.|.+||..+
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            88999999999998888775 44  68888998876432 2 2234567889999999999988864   5899999988


Q ss_pred             cceE
Q psy4393         228 VTPA  231 (247)
Q Consensus       228 ~~~~  231 (247)
                      .+..
T Consensus       345 ~~~~  348 (415)
T 2hqs_A          345 GGVQ  348 (415)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            7654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=4e-24  Score=175.41  Aligned_cols=200  Identities=15%  Similarity=0.098  Sum_probs=155.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----------eEEE-----EEecccCCeEEEEECCCCCEEE----EE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----------KFEK-----TISGHKLGISDVAWSSDSRLLV----SG   87 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~l~----~~   87 (247)
                      ...+..+++++++.++++++.++ +++|+....          ....     ....+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578899999999999998887 888764210          0111     1112455799999999999999    78


Q ss_pred             cCCCeEEEEECCCc--------e---EEEEEecCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCC
Q psy4393          88 SDDKTLKIWELSSG--------K---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP  155 (247)
Q Consensus        88 ~~d~~i~v~d~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  155 (247)
                      +.|+.|++||+.++        +   ....+.+|...|.+++|+|+ +.++++++.||.|++||++++..+.....|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        1   13445668889999999997 889999999999999999998776666678889


Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC------CCCCeEEEEECCCCCEEEEEE-cCC------eEEE
Q psy4393         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVKFSPNGKYILAAT-LDN------TLKL  222 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~-~dg------~i~v  222 (247)
                      +.+++|+|+|++|++|+.||.|++||.+ ++....+...      +...+..++|++++.++++.+ .||      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 4444333221      123688999999988886543 443      3899


Q ss_pred             EECCCc
Q psy4393         223 WDSKVV  228 (247)
Q Consensus       223 wd~~~~  228 (247)
                      |+++..
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            998754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=5.1e-23  Score=159.31  Aligned_cols=208  Identities=17%  Similarity=0.240  Sum_probs=155.0

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CeEEEEEeccc-CCeEEEEECCCCCEEEEEcC--C--CeEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHK-LGISDVAWSSDSRLLVSGSD--D--KTLKI   95 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--d--~~i~v   95 (247)
                      .+..|...|.+++|+|+|++|++++ ++.|.+||..+ ++.......+. ..+.+++|+|+++.+++++.  +  ..|..
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            3456889999999999999999876 78999999988 76665555543 56888999999999999883  3  34555


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEEEEec-
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-  172 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  172 (247)
                      ++..++. ...+..+ ..+..+.|+|+++.++ ++..++.+++|++.. +.....+..+...+.+++|+|+++.+++++ 
T Consensus       115 ~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          115 LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence            5555554 3334433 3478889999999877 677889899998632 233455666778899999999999887665 


Q ss_pred             CCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-----------CeEEEEECCCcceEEE
Q psy4393         173 YDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----------NTLKLWDSKVVTPAII  233 (247)
Q Consensus       173 ~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~  233 (247)
                      .++.+.+|++. .+.....+ ..+...+..++|+|+|++|++++.+           +.|.+||.+..+...+
T Consensus       193 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          193 RTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             TTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             CCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            58888888875 33333333 3344567889999999999988865           5799999988765433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=6.6e-23  Score=178.56  Aligned_cols=207  Identities=13%  Similarity=0.179  Sum_probs=162.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEecCCCeEEEEEecccC------------------------CeEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSA-DK-----LIKIWGAYDGKFEKTISGHKL------------------------GISDVA   76 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~------------------------~v~~~~   76 (247)
                      ...+.+++|+|||++|++++. |+     .|++||..+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999887 88     899999988887766655432                        278899


Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCce--EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC
Q psy4393          77 WSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD  154 (247)
Q Consensus        77 ~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  154 (247)
                      |+|||++|++++. +.|++||+.++.  ....+..+...+..+.|+|+|+.+++++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999998886 899999998872  3445666777899999999999999887 46899999998876554443333


Q ss_pred             C----------------eEEEEECCCCCEEEEecCCC---------------------------------eEEEEeCCC-
Q psy4393         155 P----------------VSAVHFNRDGSLIVSSSYDG---------------------------------LCRIWDTAS-  184 (247)
Q Consensus       155 ~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~v~d~~~-  184 (247)
                      .                +..+.|+|||++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                36789999999999887665                                 788999988 


Q ss_pred             ceeeeeecc-CCCCCeEEEEECCCCCEEEEEEc-----CCeEEEEECCCcceEEEEcc
Q psy4393         185 GQCLKTLID-DDNPPVSFVKFSPNGKYILAATL-----DNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       185 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ++....... .+...+..++| |||++|++++.     +..|.+||..+++...+...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  330 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE  330 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence            765443222 24456788999 99999998764     56899999998876655543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.4e-21  Score=155.51  Aligned_cols=210  Identities=9%  Similarity=0.065  Sum_probs=165.9

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccC---------CeEEEEECCCCCEEEEEc--CCCeEEE
Q psy4393          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDSRLLVSGS--DDKTLKI   95 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~v   95 (247)
                      ..+..++|+|+|++++. ...++.|.+||..+++....+..+..         .+..++|+|+++.+++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            45678999999996654 45579999999998888777765432         268899999999877665  4789999


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC----CCCCeEEEEECCCCCEEEEe
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~  171 (247)
                      ||..+++....+..+...+..+.|+|+++.+++++.++.+.+||+.+++....+..    +...+..++|+|+++.++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            99999988877764555577889999999999999999999999999988777654    34467889999999977666


Q ss_pred             cC-CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEccCCcc
Q psy4393         172 SY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       172 ~~-dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      +. ++.+.+||..+++....+.....   ..++|+|++++++++. .++.|.+||..+.+.+..+..+..+
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~  316 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP  316 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCC
Confidence            54 58999999999887766544332   4588999999777666 6899999999988776666554433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2.5e-21  Score=154.01  Aligned_cols=210  Identities=9%  Similarity=0.039  Sum_probs=167.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWE   97 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d   97 (247)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++....+.. ...+..++|+|+++.+ ++...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3467889999999998887763       56899999998887777654 3346788999999965 4555679999999


Q ss_pred             CCCceEEEEEecCCc---------cEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC
Q psy4393          98 LSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  166 (247)
                      ..+++....+..+..         ....+.|+|+++.+++++  .++.|.+||+.+++.+..+..+...+..++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            999988777765432         267899999999877765  478899999999998888775555678899999999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcC-CeEEEEECCCcceEEEEcc
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLD-NTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~  236 (247)
                      .++++..++.+.+||+.+++....+...   ....+..++|+|+++++++++.+ +.|.+||..+.+.+..+..
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            9999999999999999998877665431   23456779999999988877754 8999999988876655543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=3.9e-21  Score=151.71  Aligned_cols=203  Identities=11%  Similarity=0.084  Sum_probs=158.9

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecc-----cCCeEEEEECCCCCEEEEEc------------CC
Q psy4393          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSRLLVSGS------------DD   90 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~------------~d   90 (247)
                      .+..++|+|+|++++ ++..++.|.+||..+++....+...     ...+..++|+|+|+.++++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998765 5556789999999888877666532     12567889999999988885            57


Q ss_pred             CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----------------
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----------------  153 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------------  153 (247)
                      +.|.+||+.+++....+.. ...+..+.|+|+++.++++  ++.+++||+.+++....+..+.                 
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999998887776664 3446678899999988777  6889999998887654443221                 


Q ss_pred             -------------------------------------------------CCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         154 -------------------------------------------------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       154 -------------------------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                                                                       ..+.+++|+|++++++++  ++.|.+||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence                                                             123458999999998888  79999999999


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++....+...  ..+..++|+|+|++|++++.++.|.+||..+.+.+..+..+.
T Consensus       270 ~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          270 NASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            8876655433  345779999999999999999999999999988777766553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.1e-20  Score=149.44  Aligned_cols=200  Identities=12%  Similarity=0.245  Sum_probs=145.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCC-CeEEEEecC--CCeEE--EEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEEC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAY--DGKFE--KTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL   98 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~   98 (247)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...  ..+..+. .+..++|+|+++.+++++ .++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            577789999999999998888776 899999987  44432  3343333 788999999999876665 4889999999


Q ss_pred             C---CceEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCC-CeEEE----eecC-CCCCeEEEEECCCCCEE
Q psy4393          99 S---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRT-GKCLK----TLPA-HSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        99 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l  168 (247)
                      .   ..+....+.. ...+.++.|+|+++.+++++ .++.|++||+.+ ++...    .... ....+..++|+|+++++
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence            4   3344444443 34577889999999888777 889999999987 54321    2222 23467889999999976


Q ss_pred             EEe-cCCCeEEEEeCCC--cee--eeeec--c-C--CCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         169 VSS-SYDGLCRIWDTAS--GQC--LKTLI--D-D--DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       169 ~~~-~~dg~i~v~d~~~--~~~--~~~~~--~-~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      +++ ..++.+.+||+..  ++.  .....  . .  ....+..++|+|+|++|+++. .++.|.+||.+
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            554 4789999999953  332  11111  1 1  123456799999999888655 78999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.3e-21  Score=163.19  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=161.6

Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC--CCceEEEEEecCC
Q psy4393          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHS  111 (247)
Q Consensus        34 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~  111 (247)
                      +|+|++..+++++.++.|.+||..+++....+..+.. +..++|+|+|+++++++.++.|.+||+  .+++.+..+.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            4889998899999999999999999998888874333 889999999999999999999999999  78888887774 4


Q ss_pred             ccEEEEEEcC----CCCEEEEee-CCCCEEEEECCCCeEEEeecCC-----------CCCeEEEEECCCCC-EEEEecCC
Q psy4393         112 NYVFCCNFNP----QSNLIVSGS-FDESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGS-LIVSSSYD  174 (247)
Q Consensus       112 ~~v~~~~~~~----~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~d  174 (247)
                      .....++|+|    +++++++++ .++.|.+||..+++.+..+..+           ...+..+.++|++. ++++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            4578899999    999999887 4899999999999988877642           22688899999776 45666778


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +.|.+||..+.+.+..........+..++|+|+|++|++++ .+++|.+||.++.+.+..+.
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence            99999999876544311112234456789999999887665 58999999999987666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.3e-20  Score=148.88  Aligned_cols=205  Identities=12%  Similarity=0.099  Sum_probs=152.4

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCeE-EEEEecccCCeEEEEECCCCCEEEEEcCCC---eEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIW   96 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~   96 (247)
                      .+..+...+ .++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+|
T Consensus        35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            333445566 9999999997766655 88999999988876 666665555555599999999998655553   89999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEE-eeCCCC-EEEEECCCCeEE----EeecCCCCCeEEEEECCCCCEEEE
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDES-VRIWDVRTGKCL----KTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~-i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      |+.+++.+..+..+ .....+.|+|+++.+++ ...++. +.+|++.....+    ............++|+|+|+++++
T Consensus       114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred             ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence            99998887776654 34688999999985554 455688 999998754322    111133445789999999996554


Q ss_pred             -ecCCCeEEEEeCCCcee---eeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393         171 -SSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP  230 (247)
Q Consensus       171 -~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~  230 (247)
                       +..++.|.+||+.+++.   +..+..  ...+..++|+|||++|+++. .++.|.+||..+++.
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence             55688999999998876   554432  23456799999999887765 477899999988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=9.5e-22  Score=161.30  Aligned_cols=200  Identities=11%  Similarity=0.134  Sum_probs=147.2

Q ss_pred             cCCCCeEEEEECCCCCEEE----EEeCCCeEEEEecCCC--------e---EEEEEecccCCeEEEEECCC-CCEEEEEc
Q psy4393          25 GHTKAVSSVKFSPNGEWLA----SSSADKLIKIWGAYDG--------K---FEKTISGHKLGISDVAWSSD-SRLLVSGS   88 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~----~~~~dg~v~iw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~   88 (247)
                      .|...|.+++|+|+|++|+    +++.|+.|++||+.+.        +   ....+.+|...|.+++|+|+ +..+++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3567899999999999999    7888999999997543        1   13345568889999999997 78999999


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-------CCCeEEEEE
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-------SDPVSAVHF  161 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~  161 (247)
                      .||.|++||++++........|...+.+++|+|++++|++|+.||.|++||++ ++....+..+       ...+.++.|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence            99999999999887766667788899999999999999999999999999998 5555544433       237899999


Q ss_pred             CCCCCEEEEe-cCCC------eEEEEeCCCcee-----eeeecc------CCCCCeEEEEECCCCCEEEEEEc-CCeEEE
Q psy4393         162 NRDGSLIVSS-SYDG------LCRIWDTASGQC-----LKTLID------DDNPPVSFVKFSPNGKYILAATL-DNTLKL  222 (247)
Q Consensus       162 ~~~~~~l~~~-~~dg------~i~v~d~~~~~~-----~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v  222 (247)
                      ++++.++++. ..+|      .+++|+++..+.     ...+..      ....+...+..-++.+++++++. .+.|.|
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v  328 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI  328 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence            9988877543 3333      388999886421     111111      11122223334467677766654 455666


Q ss_pred             EEC
Q psy4393         223 WDS  225 (247)
Q Consensus       223 wd~  225 (247)
                      ...
T Consensus       329 l~~  331 (434)
T 2oit_A          329 LAR  331 (434)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=2.7e-20  Score=147.23  Aligned_cols=196  Identities=14%  Similarity=0.249  Sum_probs=139.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCeEEEEecCCC---eEEEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEECCC-c
Q psy4393          28 KAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSS-G  101 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~  101 (247)
                      ..+..++|+|+|++|++++. ++.|.+|+..++   .....+. ....+.+++|+|+++.+++++ .++.|.+||+.+ +
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            37889999999998876654 889999998433   2333333 234588899999999888776 889999999987 5


Q ss_pred             eEEE----EEec-CCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCC--CeE--EEeec---CC---CCCeEEEEECCCC
Q psy4393         102 KCLK----TLKG-HSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRT--GKC--LKTLP---AH---SDPVSAVHFNRDG  165 (247)
Q Consensus       102 ~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~~  165 (247)
                      +...    .+.. ....+..+.|+|+++.++++ ..++.+++||+..  ++.  .....   ..   ...+..++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            4322    2222 23467789999999976555 4788999999953  322  22222   11   2356689999999


Q ss_pred             CEEE-EecCCCeEEEEeCC--Cc--eeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         166 SLIV-SSSYDGLCRIWDTA--SG--QCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       166 ~~l~-~~~~dg~i~v~d~~--~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      ++|+ ++..++.+.+||+.  ++  +.+..+...  ..+..++|+|+|++|++++ .++.|.+|+.+
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            8777 45578999999998  32  233332222  2367799999999999888 57999999543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.9e-22  Score=175.21  Aligned_cols=203  Identities=10%  Similarity=0.122  Sum_probs=155.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC---CeEEEEECCCCCEEEEEcCC---------CeEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSDD---------KTLKIW   96 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~v~   96 (247)
                      .+.+++|+|||+++++ +.||.|++||..+++....+..+..   .+.+++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997766 7899999999998887777776654   48999999999999988764         788899


Q ss_pred             ECCCceEEEEEec---CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe-----------------
Q psy4393          97 ELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----------------  156 (247)
Q Consensus        97 d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-----------------  156 (247)
                      |+.+++. ..+..   +...+..+.|+|+|+.+++++. +.|++||+.+++.......+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998875 33332   3334777899999999999876 789999999887665544433333                 


Q ss_pred             -EEEEECCCCCEEEEecCCC----------------------------------eEEEEeCCCceeeeeeccC-----CC
Q psy4393         157 -SAVHFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCLKTLIDD-----DN  196 (247)
Q Consensus       157 -~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~~~~~~~-----~~  196 (247)
                       .+++|+|||+.|++++.++                                  .+.+||+.+++....+...     +.
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999998876543                                  7999999887754443322     13


Q ss_pred             CCeEEEEECCCCCEEEEEEc----CCeEEEEECCCcceEEEE
Q psy4393         197 PPVSFVKFSPNGKYILAATL----DNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       197 ~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~  234 (247)
                      ..+..++|+|||++|++...    +..|.+||..+++...+.
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~  296 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence            45788999999999877653    358999999887765543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.9e-20  Score=154.58  Aligned_cols=207  Identities=11%  Similarity=0.044  Sum_probs=158.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEec--CCCeEEEEEecccCCeEEEEECC----CCCEEEEEcC-CCeEEEEECCCce
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSS----DSRLLVSGSD-DKTLKIWELSSGK  102 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~v~d~~~~~  102 (247)
                      +..++|+|+|++|++++.++.|.+||.  .+++....+.. ...+..++|+|    +|+++++++. ++.|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999999999999999999999999  77777777763 45678999999    9999988874 8999999999998


Q ss_pred             EEEEEecC-----------CccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEE
Q psy4393         103 CLKTLKGH-----------SNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       103 ~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      .+..+...           ...+..+.++|++.. +++...++.|.+||+.+.+.+.  .+. +...+..+.|+|+++++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence            88777542           226788999997654 5566778999999998765433  333 34456788999999977


Q ss_pred             EEe-cCCCeEEEEeCCCceeeeeeccC---CCCCeEEEEECCC-CCEEEEEE-cCCeEEEEECCC-------cceEEEEc
Q psy4393         169 VSS-SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPN-GKYILAAT-LDNTLKLWDSKV-------VTPAIICS  235 (247)
Q Consensus       169 ~~~-~~dg~i~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~  235 (247)
                      +++ ..++.|.+||+.+++....+...   +......+ ++|+ ++.++++. .|++|.|||...       .+.+..+.
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            655 45889999999999887766432   22222223 4777 55566665 579999999987       66666665


Q ss_pred             cCCc
Q psy4393         236 TPLN  239 (247)
Q Consensus       236 ~~~~  239 (247)
                      .+..
T Consensus       418 ~~g~  421 (543)
T 1nir_A          418 GQGG  421 (543)
T ss_dssp             CSCS
T ss_pred             cCCC
Confidence            5443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=4e-20  Score=146.00  Aligned_cols=205  Identities=14%  Similarity=0.167  Sum_probs=150.7

Q ss_pred             EEECCCCCE-EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-CCeEEEEECCCceE-EEEEec
Q psy4393          33 VKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGKC-LKTLKG  109 (247)
Q Consensus        33 ~~~s~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~-~~~~~~  109 (247)
                      ..|.+++++ ++++..++.|.+||..+++....+..+.... .++|+|+++++++++. ++.|.+||..+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            456666665 5677788999999999988877776655556 9999999997666555 88999999998886 666666


Q ss_pred             CCccEEEEEEcCCCCEEEEeeCCC---CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCe-EEEEeCCC
Q psy4393         110 HSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL-CRIWDTAS  184 (247)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~v~d~~~  184 (247)
                      +.....++.|+|++++++++..++   .|++||+.+++.+..+..+. ...+++|+|+|++++++ ..++. +.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            655555489999999999665553   89999999998887776543 46899999999865554 45577 99999875


Q ss_pred             ceee----eeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce---EEEEccCCcc
Q psy4393         185 GQCL----KTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP---AIICSTPLNL  240 (247)
Q Consensus       185 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~  240 (247)
                      ...+    .... ........++|+|+|+++++++ .++.|.+||.++.+.   +..+.....+
T Consensus       161 ~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~  223 (331)
T 3u4y_A          161 DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP  223 (331)
T ss_dssp             TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC
T ss_pred             CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC
Confidence            3322    1111 2234568899999999776665 588999999988776   5555544333

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=3.2e-20  Score=147.28  Aligned_cols=201  Identities=14%  Similarity=0.101  Sum_probs=153.3

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEeccc------CCeEEEEECCCCCEEEEEcCC-----------
Q psy4393          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHK------LGISDVAWSSDSRLLVSGSDD-----------   90 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d-----------   90 (247)
                      .+..++|+|+|++++ ++..++.|.+||..+++....+....      ..+..++|+|+|+++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            578899999998665 45568999999998888776665322      236789999999999988865           


Q ss_pred             -CeEEEEECCCceE---EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-------------
Q psy4393          91 -KTLKIWELSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------------  153 (247)
Q Consensus        91 -~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------  153 (247)
                       +.|.+||+.+++.   +..+.. ...+.+++|+|+++ +++++  +.|++||+.+++....+..+.             
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence             8999999987432   233333 33577888999999 55543  349999999887766554321             


Q ss_pred             -------------------------------------------------------CCeEEEEECC-CCCEEEEecCCCeE
Q psy4393         154 -------------------------------------------------------DPVSAVHFNR-DGSLIVSSSYDGLC  177 (247)
Q Consensus       154 -------------------------------------------------------~~i~~~~~~~-~~~~l~~~~~dg~i  177 (247)
                                                                             ..+..++++| ++++++++  ++.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v  277 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL  277 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence                                                                   1344667789 99998888  8899


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      .+||+.+++....+....  .+..++|+|++++|++++.++.|.+||.++.+.+..+..+
T Consensus       278 ~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          278 AKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            999999988766654332  3567999999999999888999999999998877777665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.8e-19  Score=141.42  Aligned_cols=202  Identities=15%  Similarity=0.182  Sum_probs=141.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCeE--EEEEecccCCeEEEEECCCCCEEEEEc-CCCeEEEEE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWE   97 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d   97 (247)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++..  ...+..+...+..++|+|+|+++++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556778899999999 555544   68999999976653  233344566788999999999888877 689999999


Q ss_pred             CCC-ce--EEEEEecC---------CccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeEE--EeecCC-CCCeEEEEE
Q psy4393          98 LSS-GK--CLKTLKGH---------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCL--KTLPAH-SDPVSAVHF  161 (247)
Q Consensus        98 ~~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~--~~~~~~-~~~i~~~~~  161 (247)
                      +.. +.  .+..+...         ...+.++.|+|+++++++...++.+++||+. +++..  ..+... ......++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            963 22  22333211         1247789999999966666778899999998 45432  222222 235778999


Q ss_pred             CCCCCEEEE-ecCCCeEEEEeCCC--ceee--eeeccCC-----CCCeEEEEECCCCCEEEE-EEcCCeEEEEECC
Q psy4393         162 NRDGSLIVS-SSYDGLCRIWDTAS--GQCL--KTLIDDD-----NPPVSFVKFSPNGKYILA-ATLDNTLKLWDSK  226 (247)
Q Consensus       162 ~~~~~~l~~-~~~dg~i~v~d~~~--~~~~--~~~~~~~-----~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~  226 (247)
                      +|+|+++++ ...++.+.+|++..  ++..  .......     ......++|+|||++|++ ...++.|.+||.+
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            999996655 56688999998764  4422  1211111     134778999999998855 4568999999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=4.9e-19  Score=140.80  Aligned_cols=207  Identities=13%  Similarity=0.186  Sum_probs=142.6

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecC-CCeE--EEEEecc---------cCCeEEEEECCCCCEEEEEcCC
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAY-DGKF--EKTISGH---------KLGISDVAWSSDSRLLVSGSDD   90 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~-~~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d   90 (247)
                      ..+...+..++|+|+|++|++++ .++.+.+|++. ++..  ...+...         ...+.+++|+|+|+.+++...+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            34667788999999999888877 67899999985 3332  2222211         1237889999999966677778


Q ss_pred             CeEEEEECC-CceEEE--EEec-CCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCC--CeE--EEeecCCC------CC
Q psy4393          91 KTLKIWELS-SGKCLK--TLKG-HSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRT--GKC--LKTLPAHS------DP  155 (247)
Q Consensus        91 ~~i~v~d~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~--~~~--~~~~~~~~------~~  155 (247)
                      +.|.+|++. +++...  .+.. .......++|+|+++++++ ...++.+++|++..  ++.  +..+....      ..
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG  241 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence            899999998 444322  2222 2235678999999996655 56678899999874  442  22222222      34


Q ss_pred             eEEEEECCCCCEEE-EecCCCeEEEEeCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEEcC-CeEEEE--ECCCc
Q psy4393         156 VSAVHFNRDGSLIV-SSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW--DSKVV  228 (247)
Q Consensus       156 i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw--d~~~~  228 (247)
                      +..++|+|+|++|+ +...++.|.+||+...   +.+..+.. +...+..++|+|||++|++++.+ +.|.+|  |..++
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            78899999999775 4556899999998732   22333222 23345789999999999988865 899999  44455


Q ss_pred             ceE
Q psy4393         229 TPA  231 (247)
Q Consensus       229 ~~~  231 (247)
                      +..
T Consensus       321 ~l~  323 (347)
T 3hfq_A          321 KLS  323 (347)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=9.6e-21  Score=164.49  Aligned_cols=201  Identities=10%  Similarity=0.143  Sum_probs=146.9

Q ss_pred             EEecCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEEecCCCeEEEEEec---ccCCeEEEEECCCCCEEEE
Q psy4393          22 TLAGHTK---AVSSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSRLLVS   86 (247)
Q Consensus        22 ~~~~h~~---~v~~~~~s~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~   86 (247)
                      .+..|..   .|.+++|||||++|++++.+         +.+.+||..+++. ..+..   +...+..++|+|||+.|+.
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence            3444543   49999999999999988764         7888999988765 33332   2334788999999999998


Q ss_pred             EcCCCeEEEEECCCceEEEEEecCCcc------------------EEEEEEcCCCCEEEEeeCCC---------------
Q psy4393          87 GSDDKTLKIWELSSGKCLKTLKGHSNY------------------VFCCNFNPQSNLIVSGSFDE---------------  133 (247)
Q Consensus        87 ~~~d~~i~v~d~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~d~---------------  133 (247)
                      ++. +.|++||+.+++.......+...                  +..+.|+|+|+.|++++.++               
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            876 79999999988766554443322                  26799999999999887543               


Q ss_pred             -------------------CEEEEECCCCeEEEeecCC------CCCeEEEEECCCCCEEEEecC----CCeEEEEeCCC
Q psy4393         134 -------------------SVRIWDVRTGKCLKTLPAH------SDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTAS  184 (247)
Q Consensus       134 -------------------~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~  184 (247)
                                         .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|.+||+.+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                               7999999888755555543      456889999999998876643    35799999998


Q ss_pred             ceeeeeeccCCCCCe----EEEEECCCCCEEEEE--EcCC------eEEEEE
Q psy4393         185 GQCLKTLIDDDNPPV----SFVKFSPNGKYILAA--TLDN------TLKLWD  224 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~dg------~i~vwd  224 (247)
                      ++....+...+...+    ..++|+|||+.|+..  ..++      .|.+||
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            876554432222222    267899999988764  4566      577777

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=1.8e-19  Score=142.97  Aligned_cols=201  Identities=13%  Similarity=0.088  Sum_probs=150.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEec
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      .+++++++.++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45688889999999999999999999888877776443 2577899999998654 556789999999999887766653


Q ss_pred             CC------ccEEEEEEcCCCCEEEEeeCC------------CCEEEEECCCCeE---EEeecCCCCCeEEEEECCCCCEE
Q psy4393         110 HS------NYVFCCNFNPQSNLIVSGSFD------------ESVRIWDVRTGKC---LKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       110 ~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      ..      ..+..+.|+|+++.+++++.+            +.|.+||+.+++.   +..+.. ...+.+++|+|+++ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            22      225678999999999988865            8999999987442   233333 33578889999999 5


Q ss_pred             EEecCCCeEEEEeCCCceeeeeeccCC-----------------------------------------------------
Q psy4393         169 VSSSYDGLCRIWDTASGQCLKTLIDDD-----------------------------------------------------  195 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------------------------------------------  195 (247)
                      ++++.  .+.+||+.+++....+....                                                     
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            55543  49999998887655442221                                                     


Q ss_pred             --------------CCCeEEEEECC-CCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         196 --------------NPPVSFVKFSP-NGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       196 --------------~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                                    ...+..++|+| ++++++++  ++.|.+||.++.+.+..+..+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~  295 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH  295 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC
Confidence                          01234567889 99999888  8999999999887766655443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=5.6e-21  Score=166.41  Aligned_cols=195  Identities=12%  Similarity=0.078  Sum_probs=148.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      .|.+++|+|||++|++++. +.|.+||..++.  ....+..+...+..++|+|||+.|+.++ ++.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            3789999999999998875 999999998762  3344556667899999999999998887 46899999998776544


Q ss_pred             EecCCcc----------------EEEEEEcCCCCEEEEeeCCC---------------------------------CEEE
Q psy4393         107 LKGHSNY----------------VFCCNFNPQSNLIVSGSFDE---------------------------------SVRI  137 (247)
Q Consensus       107 ~~~~~~~----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~v  137 (247)
                      ...+...                +..+.|+|+|+.|++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            3333221                36689999999999987665                                 7889


Q ss_pred             EECCC-CeEEEeec--CCCCCeEEEEECCCCCEEEEecC-----CCeEEEEeCCCceeeeeeccCCCC---CeEEEEECC
Q psy4393         138 WDVRT-GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSP  206 (247)
Q Consensus       138 ~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~s~  206 (247)
                      ||+.+ ++......  .+...+..++| |||+.|++++.     +..|.+||+.+++....+......   .+..++|+|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99988 76544332  35667899999 99999887653     467999999988765544332221   345689999


Q ss_pred             CCCEEEEEEcCCeEEEEECC
Q psy4393         207 NGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       207 ~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ||+++++++.||.++||..+
T Consensus       347 dg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEEC
T ss_pred             CCeEEEEecCCCccEEEEEc
Confidence            99988888889977777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.4e-20  Score=145.45  Aligned_cols=189  Identities=20%  Similarity=0.240  Sum_probs=140.6

Q ss_pred             CCCeEEEEECCCCCEEEEEe--CCCeEEEEe--cCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEEC--C
Q psy4393          27 TKAVSSVKFSPNGEWLASSS--ADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWEL--S   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~--~dg~v~iw~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~--~   99 (247)
                      ...+.+++|+|+|++|++++  .++...+|.  ..++. ...+.. ...+..++|+|+++.++ ++..++.+.+|++  .
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            36788999999999999888  334555554  44443 233333 33488899999999877 7778898899985  3


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECC-CCeEEEeecCCCCCeEEEEECCCCCEEEEecCC---
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---  174 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  174 (247)
                      ++. ...+..+...+.++.|+|+++.+++++ .++.+++|++. .+..+..+..+...+..++|+|++++|++++.+   
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  240 (297)
T 2ojh_A          162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV  240 (297)
T ss_dssp             TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence            333 345666777889999999999887765 58899999886 455566777777788999999999999888765   


Q ss_pred             --------CeEEEEeCCCceeeeeec-cCCCCCeEEEEECCCCCEEEEEEcCC
Q psy4393         175 --------GLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDN  218 (247)
Q Consensus       175 --------g~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg  218 (247)
                              +.+.+||+.+++...... ..+...+..++|+|++++|++++.+.
T Consensus       241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                    569999998876533221 13345677789999999999887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=2.5e-20  Score=168.03  Aligned_cols=197  Identities=12%  Similarity=0.097  Sum_probs=162.6

Q ss_pred             CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEEEEEcCCCeEE-EEECCCce
Q psy4393          26 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGSDDKTLK-IWELSSGK  102 (247)
Q Consensus        26 h~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-v~d~~~~~  102 (247)
                      |...+.+++|+ |+|++|++++ ++.+.+|+...+... .+..+.. .+..++|+ +|+.++.++.+..+. +|+..+++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            44578999999 9999998877 789999998776644 3555555 78999999 999999988888888 99998776


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC-------
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-------  175 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------  175 (247)
                      .. .+..+...+..++|+|+++.+++++.++.+++||+.+++.......|...+..++|+|||++|++++.++       
T Consensus       371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence            54 3446667889999999999999999999999999999987777767888889999999999998877644       


Q ss_pred             ---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                         .+++||+.+++ ...+ ..+...+..++|+|||++|+.++.++...+|+....
T Consensus       450 ~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             CCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence               89999999877 3333 334456778999999999999999888888986543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=3e-20  Score=161.04  Aligned_cols=195  Identities=12%  Similarity=0.134  Sum_probs=147.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-----ce
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-----GK  102 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~  102 (247)
                      ..|.+++|+|| +.++.+ .++.+++||..+++... +..+...+..++|+|||+.|+++ .++.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            57999999999 655554 46999999998876544 44455668889999999999885 679999999988     76


Q ss_pred             EEEEEecCCcc--------------EEEEEEcCCCCEEEEee---------------------------------CCCCE
Q psy4393         103 CLKTLKGHSNY--------------VFCCNFNPQSNLIVSGS---------------------------------FDESV  135 (247)
Q Consensus       103 ~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i  135 (247)
                      .......+...              +.++.|+|+|+.|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            55433333322              36789999999999987                                 34679


Q ss_pred             EEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecCCC-----eEEEEeCCCceeeeeecc-CCC---CCeEEEEE
Q psy4393         136 RIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLID-DDN---PPVSFVKF  204 (247)
Q Consensus       136 ~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~-~~~---~~v~~~~~  204 (247)
                      ++||+.+++......  .+...+..++|+|||+.|++++.++     .|.+||+.+++....+.. ...   ..+..++|
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            999999887644432  3556789999999999998877665     899999998833333321 111   12356789


Q ss_pred             CC--CCCEEEEEEcCCeEEEEECC
Q psy4393         205 SP--NGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       205 s~--~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +|  ||++++++..||.++||+.+
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             ecCCCCEEEEEEccCCccEEEEEE
Confidence            99  99999999999999999765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=6.7e-19  Score=138.87  Aligned_cols=194  Identities=13%  Similarity=0.151  Sum_probs=148.3

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecccC--CeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecCC-----
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHS-----  111 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~-----  111 (247)
                      +++++++.++.|.+||..+++....+.....  .+..++|+|+++.+ +++..++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788899999999999998888777653332  47889999999865 556668899999999988776665321     


Q ss_pred             ccEEEEEEcCCCCEEEEee------------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         112 NYVFCCNFNPQSNLIVSGS------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ..+..+.|+|+++.++++.            .++.|.+||+.+++.+..+.. ...+..++|+|++++++++  ++.+.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            1455789999999888875            578999999999887777665 3456778999999988877  688999


Q ss_pred             EeCCCceeeeeeccCC----------------------------------------------------------------
Q psy4393         180 WDTASGQCLKTLIDDD----------------------------------------------------------------  195 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~----------------------------------------------------------------  195 (247)
                      ||+.+++....+....                                                                
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            9998877554332111                                                                


Q ss_pred             -CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         196 -NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       196 -~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                       ...+..++|+|++++|+++  ++.|.+||.++.+.+..+..+.
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~  280 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH  280 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC
Confidence             0123458999999999988  7999999999887766655443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=6.6e-20  Score=158.91  Aligned_cols=205  Identities=18%  Similarity=0.286  Sum_probs=149.4

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-----CeEEEEEecccCC--------------eEEEEECCCCCE
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLG--------------ISDVAWSSDSRL   83 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~   83 (247)
                      +..+...+.+++|+|||++|+.+ .++.|++|+..+     ++.......+...              +.++.|+|||++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            34566778899999999999885 689999999987     6655443333332              478999999999


Q ss_pred             EEEEc---------------------------------CCCeEEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEE
Q psy4393          84 LVSGS---------------------------------DDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVS  128 (247)
Q Consensus        84 l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~  128 (247)
                      |++++                                 .+..|.+||+.+++......  .+...+..+.|+|+++.+++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            99887                                 44679999999887544332  34567889999999999998


Q ss_pred             eeCCC-----CEEEEECCCCeEEEeec--CCC---CCeEEEEECC--CCCEEEEecCCCeEEEEeCC-CceeeeeeccCC
Q psy4393         129 GSFDE-----SVRIWDVRTGKCLKTLP--AHS---DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDD  195 (247)
Q Consensus       129 ~~~d~-----~i~v~d~~~~~~~~~~~--~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~  195 (247)
                      ++.++     .|++||+.+++....+.  .+.   ..+..+.|+|  +|++++++..++.+++|++. +++....+. .+
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~  353 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KG  353 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CC
Confidence            87765     89999999883333221  111   1245689999  99999999899988888765 444444443 33


Q ss_pred             CCCeEE-EEECCCCCEEEEEEcC-C----eEEEEECCCcc
Q psy4393         196 NPPVSF-VKFSPNGKYILAATLD-N----TLKLWDSKVVT  229 (247)
Q Consensus       196 ~~~v~~-~~~s~~~~~l~~~~~d-g----~i~vwd~~~~~  229 (247)
                      ...+.. ++|+|+++.|+.++.+ +    .|..||..+..
T Consensus       354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            445655 7999999988776654 3    67777766544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=3.8e-19  Score=160.40  Aligned_cols=199  Identities=13%  Similarity=0.087  Sum_probs=158.0

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC----------eE
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK----------TL   93 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~i   93 (247)
                      .+|...+..++|+|||++|++++.++.|++||..+++.......+...+..++|+|||++|++++.++          .|
T Consensus       375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            36778899999999999999999999999999998888777777888899999999999998876644          89


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE----------------------------
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC----------------------------  145 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----------------------------  145 (247)
                      ++||+.+++ ...+..+...+..+.|+|+|+.+++++.++...+|+......                            
T Consensus       455 ~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1045)
T 1k32_A          455 HVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  533 (1045)
T ss_dssp             EEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             EEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcc
Confidence            999999877 566777777788899999999999998877766665432211                            


Q ss_pred             ---------------EEeecCCCCCeEEEEECCCCCEEEE-------------ecCCCeEEEEeCCCceeeeeeccCCCC
Q psy4393         146 ---------------LKTLPAHSDPVSAVHFNRDGSLIVS-------------SSYDGLCRIWDTASGQCLKTLIDDDNP  197 (247)
Q Consensus       146 ---------------~~~~~~~~~~i~~~~~~~~~~~l~~-------------~~~dg~i~v~d~~~~~~~~~~~~~~~~  197 (247)
                                     +..+..+.+.+..+.++|++.++++             ......+.+||+.+++... +.    .
T Consensus       534 ~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~----~  608 (1045)
T 1k32_A          534 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK----N  608 (1045)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE----E
T ss_pred             ccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee----c
Confidence                           1223335567889999999987775             1124578899998877432 22    4


Q ss_pred             CeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         198 PVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       198 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      .+..++|||||++|++++.+ .|++||....+
T Consensus       609 ~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          609 NLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             CcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            57789999999999998866 89999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=7.6e-20  Score=155.31  Aligned_cols=196  Identities=12%  Similarity=0.089  Sum_probs=141.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcC---CCeEEEEECCC-
Q psy4393          27 TKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSD---DKTLKIWELSS-  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~-  100 (247)
                      ..+|.+++|+|||++||.++. +|.+++|++.++.. ..+..+. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            467999999999999998776 99999999865554 4444444 57899999999 66776654   44455554432 


Q ss_pred             --ceEEEEEecCCccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC---
Q psy4393         101 --GKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---  174 (247)
Q Consensus       101 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  174 (247)
                        +... .+.... .....+|+|+++. +++.+.++.+.+||+.+++.......+ .  .+++|+|||+++++++.+   
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence              2222 333222 2335578887753 334444555669999988754443322 2  678999999999987766   


Q ss_pred             -CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCC--eEEEEECCCcceE
Q psy4393         175 -GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDSKVVTPA  231 (247)
Q Consensus       175 -g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~  231 (247)
                       +.|.+||+.+++.. .+ ..+...+..++|+|||++|+++..++  .|++||..++++.
T Consensus       174 ~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence             78999999888754 33 34455678999999999999888888  8999999988776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.4e-17  Score=131.72  Aligned_cols=199  Identities=14%  Similarity=0.223  Sum_probs=137.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCC--CeEEE--EEecccCCeEEEEECCCCCEEEEEc-CCCeEEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIW   96 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~   96 (247)
                      +...+..++|+|+|++|++++.+    +.+.+|++..  +....  ....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677789999999999988875    7999998764  44322  23334445677777  788776665 57899999


Q ss_pred             ECCCceEEEEE------ec--------CCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeE------E-------Ee
Q psy4393          97 ELSSGKCLKTL------KG--------HSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC------L-------KT  148 (247)
Q Consensus        97 d~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~------~-------~~  148 (247)
                      ++.....+..+      .+        +...+.++.|+|+++.+++++ .++.+++|++.....      +       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322111      11        122357799999999665554 578999998875331      1       11


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCceee--eeec--cCCCCCeEEEEECCCCCEEEEEEcC--CeEE
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCL--KTLI--DDDNPPVSFVKFSPNGKYILAATLD--NTLK  221 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~--~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~  221 (247)
                      ..........++|+|+|+++++++ .++.|.+||+.+++..  ....  .........++|+|||++|+++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223344578899999999887766 6899999999876542  2221  1222345789999999999877755  8999


Q ss_pred             EEECC
Q psy4393         222 LWDSK  226 (247)
Q Consensus       222 vwd~~  226 (247)
                      +|+.+
T Consensus       286 v~~~~  290 (361)
T 3scy_A          286 IFKVD  290 (361)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=2e-17  Score=132.27  Aligned_cols=197  Identities=14%  Similarity=0.195  Sum_probs=134.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEE----EEe--c--------ccCCeEEEEECCCCCEEEEEc-C
Q psy4393          26 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEK----TIS--G--------HKLGISDVAWSSDSRLLVSGS-D   89 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~----~~~--~--------~~~~v~~~~~~~~~~~l~~~~-~   89 (247)
                      +......+++  ++++|++++ .++.+.+|++.......    ...  +        +...+.+++|+|+|+++++++ .
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            4456677777  788777665 57899999986432211    111  1        122357899999999765554 5


Q ss_pred             CCeEEEEECCCceE------E-------EEEecCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeE--EEee---c
Q psy4393          90 DKTLKIWELSSGKC------L-------KTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC--LKTL---P  150 (247)
Q Consensus        90 d~~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~---~  150 (247)
                      ++.+.+|++.....      +       ............+.|+|+++++++++ .++.|.+||+.+++.  +..+   .
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            78999998875331      1       11122344567899999999887776 688999999987754  2222   2


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCC--CeEEEEeCC--Cce--eeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEE
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTA--SGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLW  223 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~d--g~i~v~d~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw  223 (247)
                      .+......++|+|+|++|+++..+  +.+.+|++.  +++  .+..+..  ...+..++|+|||++|++++ .++.|.+|
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            233456799999999988776654  899999985  344  2222222  33457899999999999888 56899997


Q ss_pred             ECC
Q psy4393         224 DSK  226 (247)
Q Consensus       224 d~~  226 (247)
                      +.+
T Consensus       334 ~~d  336 (361)
T 3scy_A          334 ERD  336 (361)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=2e-18  Score=139.16  Aligned_cols=212  Identities=11%  Similarity=0.039  Sum_probs=151.0

Q ss_pred             EEEEecCCCCeEE-----EEECCCCCEEEEEeC-CC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC
Q psy4393          20 KFTLAGHTKAVSS-----VKFSPNGEWLASSSA-DK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (247)
Q Consensus        20 ~~~~~~h~~~v~~-----~~~s~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   91 (247)
                      ...+..|......     .+|+|||++|+.++. +|  .|.+||..+++.......+...+..+.|+|||+.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3445566655555     789999999988776 66  488888888776665555554455678999999999999999


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEE--EEcCCCCEEEEe----------------------eCCCCEEEEECCCCeEEE
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCC--NFNPQSNLIVSG----------------------SFDESVRIWDVRTGKCLK  147 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~v~d~~~~~~~~  147 (247)
                      .+++||+.+++.......+...+...  .++|++..++..                      ..+..|.+||+.+++.. 
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-  181 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-  181 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-
Confidence            99999999988766565555544333  348999988742                      23467999999988653 


Q ss_pred             eecCCCCCeEEEEECC-CCCEEEEecCC------CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEc-CC
Q psy4393         148 TLPAHSDPVSAVHFNR-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATL-DN  218 (247)
Q Consensus       148 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~-dg  218 (247)
                      .+..+...+..+.|+| +|+.|+....+      ..|.++|...++.. .+..... ..+..++|+|||+.|+..+. ++
T Consensus       182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~  260 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKG  260 (388)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred             EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence            3334456788999999 99988776643      37888888765433 2322222 24677899999998876553 22


Q ss_pred             ----eEEEEECCCcceEEE
Q psy4393         219 ----TLKLWDSKVVTPAII  233 (247)
Q Consensus       219 ----~i~vwd~~~~~~~~~  233 (247)
                          .|.+||..+++...+
T Consensus       261 ~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEE
T ss_pred             CCcceEEEEecCCCceEEE
Confidence                399999988765443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=7.7e-18  Score=135.08  Aligned_cols=203  Identities=11%  Similarity=0.095  Sum_probs=142.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCeEEEEEecc-cCCeEEEEECCCCCE--EEEEc-------------C
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGH-KLGISDVAWSSDSRL--LVSGS-------------D   89 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~   89 (247)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++........ ......++|+|+|++  ++++.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467899999999999988887 99999986 66654333211 123455889999994  44553             6


Q ss_pred             CCeEEEEECC-CceEEEEEe----cCCccEEEEEEcCCCCEEEEee-CCCCEEEEECC-CCeEE--Eeec--CCCCCeEE
Q psy4393          90 DKTLKIWELS-SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVR-TGKCL--KTLP--AHSDPVSA  158 (247)
Q Consensus        90 d~~i~v~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~--~~~~--~~~~~i~~  158 (247)
                      ++.+.+|++. +++....+.    .+...+.++.|+|+|++++++. .++.|++||+. +++..  ..+.  .+...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8899999997 455443333    2445688999999999887765 36789999998 66542  2333  23456889


Q ss_pred             EEECCCCCEEEEecC-CCeEEEEeCC--Cceeee---eec--cCC----CC------CeEEEE-ECCCCCEEEEEEcC-C
Q psy4393         159 VHFNRDGSLIVSSSY-DGLCRIWDTA--SGQCLK---TLI--DDD----NP------PVSFVK-FSPNGKYILAATLD-N  218 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~---~~~--~~~----~~------~v~~~~-~s~~~~~l~~~~~d-g  218 (247)
                      ++|+|+|++++++.. ++.+.+|+..  +++...   .+.  ...    ..      .+..++ |+|||++|+++..+ +
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999999998887764 6899998764  454321   111  111    11      367899 99999999877643 3


Q ss_pred             -----eEEEEECC-Ccce
Q psy4393         219 -----TLKLWDSK-VVTP  230 (247)
Q Consensus       219 -----~i~vwd~~-~~~~  230 (247)
                           .|.+|+.+ +++.
T Consensus       278 ~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             TTSCCEEEEEEECTTSCE
T ss_pred             CCCCCeEEEEEECCCCCE
Confidence                 89999986 4443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=3e-19  Score=155.14  Aligned_cols=195  Identities=15%  Similarity=0.218  Sum_probs=143.4

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccC---CeEEEEECCCCCEEEEEcC---------CCeEEEEECC
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSD---------DKTLKIWELS   99 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~   99 (247)
                      +++|+|+|+++++ +.|+.|++||..+++....+..+..   .+.+++|+|||++|+.++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999976554 5699999999998887766665543   4889999999999998876         6899999999


Q ss_pred             CceEE--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCe-----------------EEE
Q psy4393         100 SGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV-----------------SAV  159 (247)
Q Consensus       100 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i-----------------~~~  159 (247)
                      +++.+  ..+   ...+..+.|+|+|+.|+++. ++.|++||+.+++...... .+...+                 .++
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88762  222   24477789999999999885 7899999998877543321 222212                 479


Q ss_pred             EECCCCCEEEEecCCC----------------------------------eEEEEeCCCceee--eee-----ccCCCCC
Q psy4393         160 HFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCL--KTL-----IDDDNPP  198 (247)
Q Consensus       160 ~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~--~~~-----~~~~~~~  198 (247)
                      +|+|||+.|++++.|.                                  .+.+||+.+++..  ..+     ...+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887542                                  7889999887642  111     1134456


Q ss_pred             eEEEEECCCCCEEEEEEcC----CeEEEEE----CCCcceE
Q psy4393         199 VSFVKFSPNGKYILAATLD----NTLKLWD----SKVVTPA  231 (247)
Q Consensus       199 v~~~~~s~~~~~l~~~~~d----g~i~vwd----~~~~~~~  231 (247)
                      +..++|+||++++++....    ..|.+||    ..+++..
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            7889999998877764432    2588899    6665443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=1.2e-18  Score=148.06  Aligned_cols=193  Identities=9%  Similarity=0.114  Sum_probs=138.5

Q ss_pred             ecCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEecCC---CeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEE
Q psy4393          24 AGHT-KAVSSVKFSPNGEWLASSSA---DKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKI   95 (247)
Q Consensus        24 ~~h~-~~v~~~~~s~~~~~l~~~~~---dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v   95 (247)
                      ..|. ..+.+++|+|| +.+++++.   +...++|....   +... .+.. .......+|+|+++. +++.+.++.+.+
T Consensus        60 t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l  136 (582)
T 3o4h_A           60 NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVAL  136 (582)
T ss_dssp             CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEE
T ss_pred             ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceE
Confidence            3455 58999999999 77777664   45556655432   2222 3322 223446688888753 333334444559


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      ||+.+++.......+.   ..+.|+|+|+.+++++.+    +.|++||+.+++.. .+..+.+.+..++|+|||+.|+++
T Consensus       137 ~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~  212 (582)
T 3o4h_A          137 YALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGL  212 (582)
T ss_dssp             EEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEE
T ss_pred             EEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEc
Confidence            9998887654443332   678899999999988776    67999999887754 566777888999999999999988


Q ss_pred             cCCC--eEEEEeCCCceeeeeeccCCCCCeEEEE--------ECCCCCEEEEEEcCCeEEEEEC
Q psy4393         172 SYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVK--------FSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       172 ~~dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ..++  .|.+||+.+++..  ....+...+..++        |+|||.++++++.||++++|+.
T Consensus       213 ~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8888  8999999988765  3333333344445        9999988889999999999998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.8e-16  Score=122.60  Aligned_cols=200  Identities=16%  Similarity=0.289  Sum_probs=148.2

Q ss_pred             CCCCeEEEEE-CCCCCEEEEEeC-CCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          26 HTKAVSSVKF-SPNGEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        26 h~~~v~~~~~-s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      |...+..+++ .++++++++... ++.|.+|+ .+++....+.. +...+..++++|+|+.+++...++.|.+||.. ++
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            4457889999 577776666543 78999999 46666555543 33468899999999988888888999999964 55


Q ss_pred             EEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC--CCCeEEEEECCCCCEEEEecCCC-eE
Q psy4393         103 CLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDG-LC  177 (247)
Q Consensus       103 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i  177 (247)
                      ....+.  .+...+..++++++++++++...++.|++||.. ++.+..+..+  ......++++++|.++++...++ .|
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            555553  233457889999999988887888999999974 4555555433  25678999999999888887776 99


Q ss_pred             EEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         178 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .+||.. ++.+..+.... ......++++|+|+++++ +.|++|++|+.....|
T Consensus       232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          232 TIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            999964 44444443322 233678999999986666 6799999999876554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=156.40  Aligned_cols=197  Identities=14%  Similarity=0.188  Sum_probs=139.5

Q ss_pred             CeEEEEECCCCCEEEEEeC---------CCeEEEEecCCCeEE--EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~---------dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      .+.+++|||||++|+.++.         ++.|++||..+++..  ..+   ...+..++|+|||+.|+.+. ++.|++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3889999999999988765         689999999887651  112   24578899999999998885 78999999


Q ss_pred             CCCceEEEEE-ecCCccE-----------------EEEEEcCCCCEEEEeeCCC--------------------------
Q psy4393          98 LSSGKCLKTL-KGHSNYV-----------------FCCNFNPQSNLIVSGSFDE--------------------------  133 (247)
Q Consensus        98 ~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~d~--------------------------  133 (247)
                      +.+++..... .++...+                 ..+.|+|+|+.|++++.|.                          
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            9887654322 1222212                 3789999999999987552                          


Q ss_pred             --------CEEEEECCCCeEE---E-----eecCCCCCeEEEEECCCCCEEEEecCC----CeEEEEe----CCCceeee
Q psy4393         134 --------SVRIWDVRTGKCL---K-----TLPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWD----TASGQCLK  189 (247)
Q Consensus       134 --------~i~v~d~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~  189 (247)
                              .|++||+.+++..   .     .+..+...+..++|+||++++++....    ..|.+||    +.+++...
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence                    6889999887642   1     123567778999999998877664322    2588899    77776543


Q ss_pred             eec---cCCCCCeE-----EEEECCCCCEEEE--EEcCC--eEEEEECCCcc
Q psy4393         190 TLI---DDDNPPVS-----FVKFSPNGKYILA--ATLDN--TLKLWDSKVVT  229 (247)
Q Consensus       190 ~~~---~~~~~~v~-----~~~~s~~~~~l~~--~~~dg--~i~vwd~~~~~  229 (247)
                      ...   ..+...+.     .+.|+|||+.|+.  ...+|  .|.+||.....
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            331   22333333     6789999997665  33455  67777876654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=1.7e-17  Score=133.14  Aligned_cols=199  Identities=14%  Similarity=0.142  Sum_probs=138.4

Q ss_pred             eEEEEECCCCCE--EEEEe-------------CCCeEEEEecC-CCeEEEEEe----cccCCeEEEEECCCCCEEEEEc-
Q psy4393          30 VSSVKFSPNGEW--LASSS-------------ADKLIKIWGAY-DGKFEKTIS----GHKLGISDVAWSSDSRLLVSGS-   88 (247)
Q Consensus        30 v~~~~~s~~~~~--l~~~~-------------~dg~v~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-   88 (247)
                      +..++|+|+|++  +++++             .+|.+.+|++. +++....+.    .+...+..++|+|+|++++++. 
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            456789999994  44553             68999999986 455544333    2345689999999999887765 


Q ss_pred             CCCeEEEEECC-CceEE--EEEe--cCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECC--CCeEE---Ee---ecCC--
Q psy4393          89 DDKTLKIWELS-SGKCL--KTLK--GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR--TGKCL---KT---LPAH--  152 (247)
Q Consensus        89 ~d~~i~v~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~~---~~---~~~~--  152 (247)
                      .++.|.+|++. +++..  ..+.  .+......+.|+|+++++++++. ++.+.+|++.  +++..   ..   +...  
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            46799999998 66543  2333  12455788999999999887765 6789999765  45432   11   2211  


Q ss_pred             --CC------CeEEEE-ECCCCCEEEEecCCC------eEEEEeCC-Cceeeee--eccCCCCCeEEEEECC---CCCEE
Q psy4393         153 --SD------PVSAVH-FNRDGSLIVSSSYDG------LCRIWDTA-SGQCLKT--LIDDDNPPVSFVKFSP---NGKYI  211 (247)
Q Consensus       153 --~~------~i~~~~-~~~~~~~l~~~~~dg------~i~v~d~~-~~~~~~~--~~~~~~~~v~~~~~s~---~~~~l  211 (247)
                        ..      .+..++ |+|||++|+++..+.      .|.+|++. +++....  ...........++|+|   ||++|
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l  324 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence              11      478899 999999888765432      89999986 5554321  1211222334578999   89999


Q ss_pred             EEEEcC-CeEEEEECCCc
Q psy4393         212 LAATLD-NTLKLWDSKVV  228 (247)
Q Consensus       212 ~~~~~d-g~i~vwd~~~~  228 (247)
                      ++++.+ +.|.+|+.+..
T Consensus       325 ~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          325 AITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSSCEEEEEEEETT
T ss_pred             EEEEcCCCeEEEEEEchh
Confidence            999875 89999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=4.4e-18  Score=148.38  Aligned_cols=198  Identities=12%  Similarity=0.158  Sum_probs=145.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-----eEEEEECCCCCEEEEEcCC---------CeE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----ISDVAWSSDSRLLVSGSDD---------KTL   93 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i   93 (247)
                      ....++.|+|||++++++  |+.|++|+..+++....+.++...     ..++.|+|||+.|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345688999999988886  899999999998887777766532     2448899999999988775         567


Q ss_pred             EEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-CCCCCe----------------
Q psy4393          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV----------------  156 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i----------------  156 (247)
                      .+||+.+++.. .+..+...+....|+|+|+.||.+. ++.|++||+.+++...... .+...+                
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            79999998754 4556667789999999999999884 6899999998876543211 222222                


Q ss_pred             -EEEEECCCCCEEEEecCCC------------------------------------eEEEEeCCC---ce--eeeeecc-
Q psy4393         157 -SAVHFNRDGSLIVSSSYDG------------------------------------LCRIWDTAS---GQ--CLKTLID-  193 (247)
Q Consensus       157 -~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~d~~~---~~--~~~~~~~-  193 (247)
                       ..+.|+|||+.|+.+..|.                                    .+.+||+.+   ++  ....+.. 
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3488999999988764221                                    578899888   62  1222221 


Q ss_pred             ----CCCCCeEEEEECCCCCEEEEEEc----CCeEEEEECCCcc
Q psy4393         194 ----DDNPPVSFVKFSPNGKYILAATL----DNTLKLWDSKVVT  229 (247)
Q Consensus       194 ----~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~  229 (247)
                          .+..-+..++|+|||+.++....    +..|.+||..+++
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                13445788999999997776543    2379999988765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=2.6e-15  Score=116.12  Aligned_cols=205  Identities=15%  Similarity=0.229  Sum_probs=150.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec------ccCCeEEEEE-CCCCCEEEEEcC-CCeEEEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAW-SSDSRLLVSGSD-DKTLKIWE   97 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-d~~i~v~d   97 (247)
                      |-..+.+++++++|+++++...++.|.+|+.. ++....+..      +...+..+++ .++++.+++... ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44678999999999988887888999999976 555555432      2346788999 577776666543 78999999


Q ss_pred             CCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecCC
Q psy4393          98 LSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus        98 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                       .+++.+..+.. +......+.++++++++++...++.|.+||.. ++.+..+.  .+...+..++++++++++++...+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence             55666655543 33467889999999988887788899999964 45555543  334568899999999988887889


Q ss_pred             CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCC-eEEEEECCCcceEEEEc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDN-TLKLWDSKVVTPAIICS  235 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~  235 (247)
                      +.|.+||... +.+..+.... ......++++++|+++++...++ .|.+||.+. +.+..+.
T Consensus       185 ~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~  245 (286)
T 1q7f_A          185 HCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALE  245 (286)
T ss_dssp             TEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEE
T ss_pred             CEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEc
Confidence            9999999754 4444443221 24568899999999888887776 999999653 3333443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=3.1e-16  Score=125.63  Aligned_cols=206  Identities=13%  Similarity=0.106  Sum_probs=136.2

Q ss_pred             EEEECCCCCEEEEEeC----------CCeEEEEecCCCeEEEEEecc------cCCeEEEEECCCCCEEEEEcC--CCeE
Q psy4393          32 SVKFSPNGEWLASSSA----------DKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLLVSGSD--DKTL   93 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i   93 (247)
                      .++|+|||+++++++.          ++.|.+||..+.+....+...      ......++++|+|++++++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8999999999988763          567999999888877776532      234567899999999988864  5789


Q ss_pred             EEEECCCceEEEE-EecCCccEEEEEEcCCC-CEEEEeeCCCC-------------------------------------
Q psy4393          94 KIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSFDES-------------------------------------  134 (247)
Q Consensus        94 ~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~-------------------------------------  134 (247)
                      .+||+.+++.+.. +....  ...+.+.|++ ..+++.+.||.                                     
T Consensus       134 ~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            9999999887766 43211  1112223322 23333333333                                     


Q ss_pred             -----------EEEEECCCCeE--EEeecCC----------CCCeEEEEECCCCCEEEEecC-----------CCeEEEE
Q psy4393         135 -----------VRIWDVRTGKC--LKTLPAH----------SDPVSAVHFNRDGSLIVSSSY-----------DGLCRIW  180 (247)
Q Consensus       135 -----------i~v~d~~~~~~--~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~  180 (247)
                                 +.++|+.....  +..+...          ......++++|++..++++..           .+.|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                       44444432210  1111000          001112678999887776543           3489999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc--ceEEEE-ccCCcccce
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV--TPAIIC-STPLNLNYF  243 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~-~~~~~~~~~  243 (247)
                      |+.+++.+..+..+.   ...++|+|||++|+++.. +.|.+||..+.  +.+..+ .....|+.|
T Consensus       292 D~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~  353 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV  353 (361)
T ss_dssp             ETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred             ECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence            999999888775544   678999999999998886 99999999998  776664 344445554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=5.9e-16  Score=120.44  Aligned_cols=208  Identities=13%  Similarity=0.060  Sum_probs=149.0

Q ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+..++++|+|+++++...++.|.+||..++
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            445666788999999998 6777888899999998776  4556556677899999999998888777889999999777


Q ss_pred             eEEEEEecC----CccEEEEEEcCCCCEEEE----ee-------------CCCCEEEEECCCCeEEEeecCCCCCeEEEE
Q psy4393         102 KCLKTLKGH----SNYVFCCNFNPQSNLIVS----GS-------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVH  160 (247)
Q Consensus       102 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~  160 (247)
                      +........    ...+..+.++|+|+++++    |.             ..+.|..++.. ++ +..+..+......++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLA  178 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEE
Confidence            654332211    123456889999998887    33             13456666655 43 333444556678999


Q ss_pred             ECCCCCEEEEecCCCeEEEEeCC-Ccee---eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         161 FNRDGSLIVSSSYDGLCRIWDTA-SGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      |+|+++.+++.+.++.|.+||+. +++.   ...+ .........++++++|++.++.  ++.|.+||.+ ++.+..+..
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~  254 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT  254 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence            99999988777778999999986 4443   2233 2223334578999999866665  8899999987 555555554


Q ss_pred             CC
Q psy4393         237 PL  238 (247)
Q Consensus       237 ~~  238 (247)
                      +.
T Consensus       255 ~~  256 (296)
T 3e5z_A          255 PQ  256 (296)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=6.8e-16  Score=122.04  Aligned_cols=207  Identities=12%  Similarity=0.093  Sum_probs=152.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEecCCCeEEEEEe-cccCCeEEEEECCCC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSAD------------------------KLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDS   81 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~   81 (247)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++...... .+......++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988887666                        479999998887765554 233468899999999


Q ss_pred             CEEEEEcCCCeEEEEECCCce-EEEEEe---------cCCccEEEEEEcC-CCCEEEEee-CCCCEEEEECCCCeEEEee
Q psy4393          82 RLLVSGSDDKTLKIWELSSGK-CLKTLK---------GHSNYVFCCNFNP-QSNLIVSGS-FDESVRIWDVRTGKCLKTL  149 (247)
Q Consensus        82 ~~l~~~~~d~~i~v~d~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~  149 (247)
                      +++++...++.|++||..... .+..+.         .+......++++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986442 344442         2233578899999 788888886 689999999 456666655


Q ss_pred             cCC----------CCCeEEEEECCC-CCEEEEecCCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECC------CCCEE
Q psy4393         150 PAH----------SDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSP------NGKYI  211 (247)
Q Consensus       150 ~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~------~~~~l  211 (247)
                      ...          -.....++++|+ +.++++...++.|.+||..+++.+..+.. .....+..++|+|      +|+..
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            321          123788999998 77777778889999999988887766643 2334577889999      33322


Q ss_pred             EEEEcCCeEEEEECCCcceEEEE
Q psy4393         212 LAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       212 ~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      ++...+++|++||..+++.+..+
T Consensus       262 v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEEEEE
T ss_pred             eccCCCcEEEEEEcCCCeEEEEE
Confidence            22333458999998887776665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=4.5e-16  Score=123.06  Aligned_cols=200  Identities=13%  Similarity=0.116  Sum_probs=149.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-EEEEEe---------cccCCeEEEEECC-CCCEEEEEc-CCCeE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTIS---------GHKLGISDVAWSS-DSRLLVSGS-DDKTL   93 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i   93 (247)
                      +......++++|+|+++++...++.|++|+..... ....+.         .+......++++| ++..+++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            44578899999999988888888999999975432 334442         2233578999999 788888876 68999


Q ss_pred             EEEECCCceEEEEEecC----------CccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeec--CCCCCeEEEE
Q psy4393          94 KIWELSSGKCLKTLKGH----------SNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVH  160 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~  160 (247)
                      ++|+ .++..+..+...          ......++++|+ +.++++...++.|++||..+++.+..+.  .+...+..++
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            9999 456666555321          123678999998 7777777888999999999888877764  3455788899


Q ss_pred             ECCCCCEEEE-------ecCCCeEEEEeCCCceeeeeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         161 FNRDGSLIVS-------SSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       161 ~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      ++| +..+.+       ...+..+.+||..+++.+..+.  .........++++|+|.++++...+++|++|+...
T Consensus       248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            999 433333       3344589999999998777653  22334568899999997777788899999999754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=2.8e-17  Score=143.37  Aligned_cols=199  Identities=11%  Similarity=0.102  Sum_probs=137.0

Q ss_pred             EEEEECCCCCEEEEEeCC---------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          31 SSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ..+.|||||++|+.++.+         +.+.+||..+++.. .+..+...+...+|+|||+.|+.+. ++.|++|+..++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            347899999999887765         56779999887654 3555667799999999999998884 689999999887


Q ss_pred             eEEEEEe-cCCccE-----------------EEEEEcCCCCEEEEeeCCC------------------------------
Q psy4393         102 KCLKTLK-GHSNYV-----------------FCCNFNPQSNLIVSGSFDE------------------------------  133 (247)
Q Consensus       102 ~~~~~~~-~~~~~v-----------------~~~~~~~~~~~l~~~~~d~------------------------------  133 (247)
                      +..+... ++...+                 ..+.|+|||+.|+..+.|.                              
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            6543211 222212                 2478999999998875321                              


Q ss_pred             ------CEEEEECCC---Ce--EEEeecC------CCCCeEEEEECCCCCEEEEecC----CCeEEEEeCCCce----ee
Q psy4393         134 ------SVRIWDVRT---GK--CLKTLPA------HSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQ----CL  188 (247)
Q Consensus       134 ------~i~v~d~~~---~~--~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~~  188 (247)
                            .|++||+.+   ++  ....+..      +...+..++|+|||+.++....    +..|.+||+.+++    +.
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                  478899988   62  2223332      6667899999999996665432    3379999998876    22


Q ss_pred             e--ee-ccCCCCC-----eEEEEECCCCCEEE-EEEc-CC--eEEEEECCCcceE
Q psy4393         189 K--TL-IDDDNPP-----VSFVKFSPNGKYIL-AATL-DN--TLKLWDSKVVTPA  231 (247)
Q Consensus       189 ~--~~-~~~~~~~-----v~~~~~s~~~~~l~-~~~~-dg--~i~vwd~~~~~~~  231 (247)
                      .  .+ ...+...     .....|+|||+.|+ ..+. +|  .|.+||...+.+.
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            1  11 1112211     22578999999887 6653 34  7888898766544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=1.8e-17  Score=133.59  Aligned_cols=202  Identities=8%  Similarity=0.010  Sum_probs=137.2

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          30 VSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      +..++|+|||++|+.....   ..+.+|+..+++..............+.|+|||+.|+.++.++.+++||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            6788999999998766433   3688888877765433332222222378999999999999999999999988776554


Q ss_pred             EecCCccEEE-------------------EEEcCCCCEEEEe-----eCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393         107 LKGHSNYVFC-------------------CNFNPQSNLIVSG-----SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus       107 ~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  162 (247)
                      ...+......                   +.|+|+++.++..     ..+..|++||+.+++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            4433332222                   2456777666544     34567999999887754433 345678899999


Q ss_pred             C-CCCEEEEecCC------CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         163 R-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       163 ~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      | ++..|+..+.+      ..|.+||+..++.. .+.... ...+..++|+|||++|+.++.+     +.|.+||..+++
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE  275 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence            9 78866665433      46888898765432 222221 2246778999999988877654     459999998776


Q ss_pred             eEEE
Q psy4393         230 PAII  233 (247)
Q Consensus       230 ~~~~  233 (247)
                      ...+
T Consensus       276 ~~~l  279 (396)
T 3c5m_A          276 NEEV  279 (396)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            5443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=1.3e-14  Score=114.48  Aligned_cols=214  Identities=8%  Similarity=0.054  Sum_probs=150.4

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC----CeEEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTLKIWE   97 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d   97 (247)
                      .+..+...+.+++|+++|++++++..++.|.+|+..+++.......+...+.+++++|+|+++++...+    +.|.+||
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            455677778999999999987788888999999988777655444456679999999999988877666    6899999


Q ss_pred             CCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393          98 LSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus        98 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      ..++.....+.  .....+..+.++|+++++++...      .+.|..+|..+++... +.........++|+|+++.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence            88776543332  23346888999999988877653      2456667765544322 222223568899999998654


Q ss_pred             -EecCCCeEEEEeCCC-ceeeee----ec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         170 -SSSYDGLCRIWDTAS-GQCLKT----LI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       170 -~~~~dg~i~v~d~~~-~~~~~~----~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                       +...++.|.+||..+ ++....    ..  .........++++++|++.++...++.|.+||.+ .+.+..+..+
T Consensus       198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~  272 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIP  272 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECT
T ss_pred             EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcC
Confidence             445678999999863 322211    11  1111346779999999988888788999999984 4444455443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=8.1e-17  Score=138.59  Aligned_cols=194  Identities=16%  Similarity=0.179  Sum_probs=137.6

Q ss_pred             EEEEC--CCCCE-EEEEeC-CCeEEEEecC--C-CeEEEEEec-----ccCCeEEEEECCCCCEEEEEcCC---------
Q psy4393          32 SVKFS--PNGEW-LASSSA-DKLIKIWGAY--D-GKFEKTISG-----HKLGISDVAWSSDSRLLVSGSDD---------   90 (247)
Q Consensus        32 ~~~~s--~~~~~-l~~~~~-dg~v~iw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d---------   90 (247)
                      ...|+  |||+. |+.++. +..|.+++..  . +. ...+..     +...+..++|+|||+.|++++.+         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            55565  99998 776543 5567777664  2 33 344444     45568899999999999988776         


Q ss_pred             -CeEEEEECCC------ceEEEEEe-cCCccEEEEEEcCCCCEEEEeeCCC--------CEEEEECC-CC---eEEEeec
Q psy4393          91 -KTLKIWELSS------GKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVR-TG---KCLKTLP  150 (247)
Q Consensus        91 -~~i~v~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~v~d~~-~~---~~~~~~~  150 (247)
                       ..|++||+.+      ++. ..+. .+...+..+.|+|+|+.|+..+.++        .|++||+. ++   +......
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence             5899999987      554 3444 4556677789999999999877553        69999998 56   3333333


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCC--eEEEEeCCCceeeeeeccCCCC--------CeEEEEECCCCCEEEEEEcCCeE
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNP--------PVSFVKFSPNGKYILAATLDNTL  220 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i  220 (247)
                      .+...+..+.|+|||++++++..++  .|.+||+.+++... +...+..        .+..++|+|+++++++++. +.+
T Consensus       239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~  316 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA  316 (662)
T ss_dssp             ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred             CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence            4467889999999999888888788  67777776665433 2222111        1456889999999999988 999


Q ss_pred             EEE--ECCCcc
Q psy4393         221 KLW--DSKVVT  229 (247)
Q Consensus       221 ~vw--d~~~~~  229 (247)
                      +||  |...+.
T Consensus       317 ~l~~~d~~~~~  327 (662)
T 3azo_A          317 VLGILDPESGE  327 (662)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            999  544443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=7.1e-16  Score=122.37  Aligned_cols=191  Identities=18%  Similarity=0.173  Sum_probs=129.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---C--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-------------
Q psy4393          28 KAVSSVKFSPNGEWLASSSAD---K--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-------------   89 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------   89 (247)
                      ..+..++|+|||++|+.++.+   +  .|.+|+..+++....... .. +..+.|+|||+.|+.++.             
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            357789999999998876643   3  377778777765544443 33 899999999998887763             


Q ss_pred             --------------CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC-------CEEEEECCCCeEEEe
Q psy4393          90 --------------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-------SVRIWDVRTGKCLKT  148 (247)
Q Consensus        90 --------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~v~d~~~~~~~~~  148 (247)
                                    ...|.+||+.+++....+.. . .+..+.|+|++ +++++..++       ...+|.+.+++. ..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence                          25789999988876344544 3 67788999999 777765442       334444435543 33


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCC--------CeEEEEeCCCceeeeeeccCCCCCeEE-EEECCCCCEEEEEEcCCe
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTASGQCLKTLIDDDNPPVSF-VKFSPNGKYILAATLDNT  219 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~  219 (247)
                      +..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++. ..+...+...+.. +.|+ |+ ++++++.++.
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence            3333 445444  8999988776643        4688888  4443 3333344456775 8999 88 8888999999


Q ss_pred             EEEEECCCcceEEE
Q psy4393         220 LKLWDSKVVTPAII  233 (247)
Q Consensus       220 i~vwd~~~~~~~~~  233 (247)
                      ++|| ...++...+
T Consensus       285 ~~l~-~~~g~~~~~  297 (347)
T 2gop_A          285 VNLY-IWDGEIKPI  297 (347)
T ss_dssp             EEEE-EESSSEEEE
T ss_pred             EEEE-EcCCceEEE
Confidence            9999 775444333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=1.2e-15  Score=132.58  Aligned_cols=208  Identities=15%  Similarity=0.135  Sum_probs=143.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCe--------
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT--------   92 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   92 (247)
                      |...+.+++|||||++||.+..++     .|++||+.+++....... ...+..++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998765433     899999998877654322 223667899999999998877655        


Q ss_pred             --------EEEEECCCceE--EEEEec--CCccEEEEEEcCCCCEEEEeeC-----CCCEEEEECCC------Ce-EEEe
Q psy4393          93 --------LKIWELSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVRT------GK-CLKT  148 (247)
Q Consensus        93 --------i~v~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~------~~-~~~~  148 (247)
                              |++|++.+++.  ...+..  +...+..+.|+|+|+.++..+.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999987652  222222  3445778899999999887764     56799999976      43 3455


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCC----CeEEEEeCCCcee--eeeeccCCC-CCeEEEEECCCCCEEEEEEcCC--e
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQC--LKTLIDDDN-PPVSFVKFSPNGKYILAATLDN--T  219 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg--~  219 (247)
                      +..+...+.. .|+|+|..|+..+..    +.|.+||+.+++.  ...+..+.. ..+..++|++++.++++...|+  .
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            5555555554 478888877665543    3699999987641  233433332 3577788988888888888888  4


Q ss_pred             EEEEECCCcceEEEEc
Q psy4393         220 LKLWDSKVVTPAIICS  235 (247)
Q Consensus       220 i~vwd~~~~~~~~~~~  235 (247)
                      |.+||..+++.+..+.
T Consensus       361 l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          361 LQLHDLATGALLKIFP  376 (710)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCCEEEecC
Confidence            6667765555433333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=5.1e-17  Score=139.85  Aligned_cols=208  Identities=13%  Similarity=0.098  Sum_probs=147.5

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEE--eCCCeEEEEecCCCeEEEEEecccCCeE---------EEEEC--CCCCE-EEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGIS---------DVAWS--SDSRL-LVSG   87 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~   87 (247)
                      .+.+|...+..++|++++-.++..  +.++...+|....+.....+..+...+.         ...|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            345789999999999876666665  5578899998644444555555555555         55565  99998 7665


Q ss_pred             cC-CCeEEEEECC--C-ceEEEEEec-----CCccEEEEEEcCCCCEEEEeeCC----------CCEEEEECCC------
Q psy4393          88 SD-DKTLKIWELS--S-GKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRT------  142 (247)
Q Consensus        88 ~~-d~~i~v~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~------  142 (247)
                      +. +..|.++++.  . +. ...+..     +...+..++|+|+|+.|++++.+          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            54 5677777765  2 33 344544     45678889999999999988876          5799999987      


Q ss_pred             CeEEEeec-CCCCCeEEEEECCCCCEEEEecCC--------CeEEEEeCC-Cce--eeeeeccCCCCCeEEEEECCCCCE
Q psy4393         143 GKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTA-SGQ--CLKTLIDDDNPPVSFVKFSPNGKY  210 (247)
Q Consensus       143 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~  210 (247)
                      ++. ..+. .+...+..++|+|||++|+.++.+        ..|.+||+. +++  ....+...+...+..+.|+|||++
T Consensus       177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence            443 4444 445667778999999999877654        379999998 561  233333333456888999999997


Q ss_pred             EEEEEcCC--eEEEEECCCcceE
Q psy4393         211 ILAATLDN--TLKLWDSKVVTPA  231 (247)
Q Consensus       211 l~~~~~dg--~i~vwd~~~~~~~  231 (247)
                      ++++..++  .|.+||..+++..
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~  278 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAAT  278 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEE
T ss_pred             EEEECCCCCeEEEEEECCCCcee
Confidence            77777788  6777776555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=1.2e-15  Score=122.91  Aligned_cols=209  Identities=12%  Similarity=0.029  Sum_probs=139.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEE--ECCCCCEEEEE----------------
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSRLLVSG----------------   87 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------   87 (247)
                      |...+..+.|+|||+.|+.+..++.+++||..+++.......+...+....  ++|+++.++..                
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence            334444678999999999999889999999998877666555444443333  48999988742                


Q ss_pred             ------cCCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCC------CCEEEEECCCCeEEEeecCCC-
Q psy4393          88 ------SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAHS-  153 (247)
Q Consensus        88 ------~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~-  153 (247)
                            ..+..|.+||+.+++.. .+..+...+..+.|+| +++.++....+      ..|.++|+..+.. ..+..+. 
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~  236 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAE  236 (388)
T ss_dssp             HHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCT
T ss_pred             hhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCC
Confidence                  23468999999988654 3444556688899999 99988877653      3788888876543 3333333 


Q ss_pred             -CCeEEEEECCCCCEEEEecC-CC----eEEEEeCCCceeeeeeccCCCCC----eEEEEECCCCCEEEEE---------
Q psy4393         154 -DPVSAVHFNRDGSLIVSSSY-DG----LCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGKYILAA---------  214 (247)
Q Consensus       154 -~~i~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~---------  214 (247)
                       ..+....|+|||+.|+..+. ++    .|.+||+.+++............    ...+.|+|||+.|+..         
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  316 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI  316 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence             24778899999997755432 22    39999999886432211111000    0113689999988865         


Q ss_pred             EcCCeEEEEECCCcceEEEEcc
Q psy4393         215 TLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       215 ~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ..+..|.+||...++...+...
T Consensus       317 ~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          317 ENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEeccCCceEEeccc
Confidence            3456999999988765444333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=4.3e-15  Score=114.52  Aligned_cols=192  Identities=15%  Similarity=0.091  Sum_probs=151.8

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCC-ccE
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYV  114 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v  114 (247)
                      ..++.|++++.++.|.+||..+++.+..+..+. ..+.++.+.|+|+.++  +.++.|..||. +++.+..+.... ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            346788999999999999999999999888765 4688999999999888  35778999998 788888887643 467


Q ss_pred             EEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCC------CCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         115 FCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHS------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      ..+.+.++|+.+++.+. ++.+..+|. +++.+..+....      .....+.+.++|.++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            78899999999999877 777888885 666665553211      133445788999999999999999999998 777


Q ss_pred             eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +-.+...  .....+...++|+.++++..+++|..+|.++++.+-.+.
T Consensus       158 ~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          158 LNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            6665433  223456778999999998888899999999888776665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=5.4e-15  Score=113.20  Aligned_cols=201  Identities=8%  Similarity=-0.066  Sum_probs=144.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..+.+++++++|+++++.. ++.|.+|+................+..++++++|+.+++...++.|.+|+..+.......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence            4678899999999666555 889999997655432221122346889999999998887777889999976554332222


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                      .........+.++++++++++...++.|.+||............+...+..++++++|.++++...++.|.+||......
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            22223466789999999887777788999999887654433333335678999999998777777788999999876543


Q ss_pred             eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       188 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .. ...........++++++|+++++...+++|++|+....+.
T Consensus       226 ~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          226 TV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            22 2222224578899999999888888899999999877554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=1.1e-14  Score=115.11  Aligned_cols=213  Identities=9%  Similarity=-0.043  Sum_probs=152.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc-----CCeEEEEECCCCCEEEEEc--CCCeEEEEECC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAWSSDSRLLVSGS--DDKTLKIWELS   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~   99 (247)
                      ......++++++++..++...++.|.+||..+++....+....     .....+++  ++..++++.  .++.|.++|..
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence            4567889999988544444378999999999888776665332     13456667  345555444  48899999999


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEeeCC----------CCEEEEECCCCeEEEeecCC-CCCeEEEEECCCCCEE
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSLI  168 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l  168 (247)
                      +++....+.... ....+.++|+++++++...+          +.|.++|..+++....+... ......++++|+++.|
T Consensus       161 t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          161 TDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             TTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             CCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence            988877776433 34567889999887776654          78999999998877666543 2357889999999988


Q ss_pred             EEecCCCeEEEEeCCCceeeeee-ccCCCCCeEEEEECCCCCEE-EEE----EcCCeEEEEECCCcceEEEEccCCcccc
Q psy4393         169 VSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYI-LAA----TLDNTLKLWDSKVVTPAIICSTPLNLNY  242 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~  242 (247)
                      +++..  .+.+||..+++..... ..........++++|++..| ++.    ..++.|.+||.+ ++.+..+.....|+.
T Consensus       240 yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~  316 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGA  316 (328)
T ss_dssp             EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEE
T ss_pred             EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcce
Confidence            88765  8999999887753221 11113456789999954444 454    467899999998 777777777677777


Q ss_pred             eee
Q psy4393         243 FYR  245 (247)
Q Consensus       243 ~~~  245 (247)
                      |+.
T Consensus       317 ~~~  319 (328)
T 3dsm_A          317 FCW  319 (328)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=4.3e-14  Score=109.85  Aligned_cols=198  Identities=14%  Similarity=0.152  Sum_probs=138.7

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEE----c------
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSG----S------   88 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~------   88 (247)
                      +..+...+.+++++|+|+++++...++.|.+|+..+++........    ...+.+++++|+|+++++.    .      
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            3456678999999999998877766789999998777654433221    2245679999999988873    2      


Q ss_pred             -------CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECC-CCeE---EEeecCCCCCeE
Q psy4393          89 -------DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKC---LKTLPAHSDPVS  157 (247)
Q Consensus        89 -------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~i~  157 (247)
                             ..+.|..++.. ++. ..+..+......++|+|+++.+++...++.|++||+. .++.   ...+..+...+.
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~  221 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD  221 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC
T ss_pred             ccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC
Confidence                   13456666654 443 3444455567889999999988777778899999986 4443   223333444567


Q ss_pred             EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE-CCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .++++++|.++++.  ++.|.+||.. ++.+..+.....  +.+++| +|+++.|++++.+ .+.-++.++.
T Consensus       222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          222 GLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             SEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             eEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            79999999976666  7889999987 555555443333  677889 6899999998875 4445555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=7.2e-13  Score=102.54  Aligned_cols=204  Identities=11%  Similarity=0.099  Sum_probs=148.7

Q ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-ecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        20 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      .+.+..+...+.+++++++|+..++...++.|.+|+.. +...... ......+..+++.++|..+++...++.|..||.
T Consensus         7 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A            7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             EEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            34555666789999999999977776667899999987 5443322 223456889999999998888777889999997


Q ss_pred             CCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          99 SSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        99 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      . ++. ..+.  .....+..+.+++++.++++...++.|..||. +++.... .......+..+++++++.++++...++
T Consensus        86 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           86 K-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             T-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             C-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            6 332 2222  23456788999999998888777889999998 5543322 233345688999999998888777788


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      .+..||. +++............+..++++++|++.++...++.|.+||. +..
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            9999998 665443222223345778999999997766666889999998 444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=9.8e-16  Score=123.45  Aligned_cols=195  Identities=9%  Similarity=0.024  Sum_probs=134.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEE-------------------EEECCCCCEEEEE-----c
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-------------------VAWSSDSRLLVSG-----S   88 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~   88 (247)
                      +.|+|||++|+.++.++.|.+|+..+++.......+......                   ..|+|+++.++..     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            789999999999888889999999877665544433321222                   3467777766544     3


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcC-CCCEEEEeeCC------CCEEEEECCCCeEEEeecCC--CCCeEEE
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAH--SDPVSAV  159 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~~i~~~  159 (247)
                      .+..|.+||+.+++..... .+...+..+.|+| ++..++..+.+      ..|.+||+..++.. .+..+  ...+..+
T Consensus       166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHE  243 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccce
Confidence            5668999999887755433 4556688899999 78877765543      36888998765432 33222  2247788


Q ss_pred             EECCCCCEEEEecCC-----CeEEEEeCCCceeeeeeccCCCCCeEEEEECC-CCCEEEEEE----------------cC
Q psy4393         160 HFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAAT----------------LD  217 (247)
Q Consensus       160 ~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d  217 (247)
                      .|+|+|+.|+.++.+     +.|.+||+.+++........   ... +.|+| ||+++++++                .+
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            999999977766543     44999999887644322111   233 88999 999888765                24


Q ss_pred             CeEEEEECCCcceEEE
Q psy4393         218 NTLKLWDSKVVTPAII  233 (247)
Q Consensus       218 g~i~vwd~~~~~~~~~  233 (247)
                      +.|.+||...+....+
T Consensus       320 ~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          320 PFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             CEEEEEETTTTBCCEE
T ss_pred             CcEEEEecccCceEEc
Confidence            7899999887654433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=3e-14  Score=109.04  Aligned_cols=199  Identities=11%  Similarity=-0.012  Sum_probs=138.5

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ...+++++++|++++ +...++.|.+|+..+.............+..++++++++.+++.. ++.|.+||....... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            778999999999766 446788999998754432221122234577899999999666666 889999998765432 22


Q ss_pred             e-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         108 K-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       108 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                      . ........+.+++++.++++...++.|.+|+..+................++++++++++++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            2 222457889999999988887778899999866544332222222356789999999977777778899999988765


Q ss_pred             eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ..... .........++++++|.++++...++.|.+||.+....
T Consensus       183 ~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          183 QVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             EEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             eEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            43322 22224568899999997667666788999999876543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=2.4e-12  Score=99.56  Aligned_cols=197  Identities=12%  Similarity=0.084  Sum_probs=143.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      .+...+.+++++++|.+.++...++.|..|+.. +.. ..+.  .....+..+++.+++..+++...++.|..||. +++
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            345678999999999987776668889999875 333 2222  23446889999999998888777889999998 554


Q ss_pred             EEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         103 CLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       103 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      .... .......+..+.+++++.++++...++.|..||. +++.... .......+..+++++++.++++...++.|.+|
T Consensus       131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence            3322 2223456788999999988887777789999998 6654332 33334567899999999987777778899999


Q ss_pred             eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |. +++............+..++++++|++.++...++.|..||.+
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            99 6654332222234567889999999866666578999999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=9.2e-15  Score=115.40  Aligned_cols=195  Identities=9%  Similarity=0.056  Sum_probs=142.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..|.++.|++++..++....++.++.|   .+.....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            456778899988877766778888888   33444556656666889999999998888888999999999887765444


Q ss_pred             ecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEeec--CCCCCeEEEEECCCCCEEEEecC------CC
Q psy4393         108 KGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY------DG  175 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg  175 (247)
                      ..+...+.++.++++++++++...+    +.|.+||..++.....+.  .....+..++++|+|.++++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            3455678999999999988877666    689999988776432322  23456889999999988776653      35


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCC
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKV  227 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~  227 (247)
                      .|..+|..+++... +.. .......++|+|+++.|+.+ +.++.|.+||.+.
T Consensus       163 ~l~~~~~~~~~~~~-~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          163 GVYYVSPDFRTVTP-IIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEEECTTSCCEEE-EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eEEEEeCCCCEEEE-eec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            67777766554332 211 12346789999999977655 4578999999853

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=5.4e-15  Score=128.09  Aligned_cols=198  Identities=12%  Similarity=0.095  Sum_probs=133.4

Q ss_pred             cCCCCeEEEEECCCCCEEEE-----EeCCCeEEEEecCCCeEE-EEEecccCCeEEEEECCCCCEEEEEcCCCe------
Q psy4393          25 GHTKAVSSVKFSPNGEWLAS-----SSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSRLLVSGSDDKT------   92 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~-----~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------   92 (247)
                      +|...+.+++|||||++||.     |+.+..|++||+.+++.. .. .........++|+|||+.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            34556889999999999884     334468999999887753 11 111111267899999999998887665      


Q ss_pred             -------EEEEECCCce----EEEEEecCCccEEEEEEcCCCCEEEEeeCCC----CEEEEECCCCeEEEeecCCCCCeE
Q psy4393          93 -------LKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKCLKTLPAHSDPVS  157 (247)
Q Consensus        93 -------i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~i~  157 (247)
                             |++|++.++.    .+.....+...+..+.|+|+|+.++..+.++    .|+++|..+++. ..+..+...+.
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~  275 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceE
Confidence                   9999998765    2222223445678899999999988877665    677777655543 33434444455


Q ss_pred             EEEECCCCCEEEEec---CCCeEEEEeCCCcee--eeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         158 AVHFNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ...+ +++.+++.+.   .++.|.+||+.+++.  ...+.... ...+..++|+ ++.++++...|+..+||..+
T Consensus       276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            5555 5666444443   257899999987642  23333332 4457778888 67788888889988877554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=1.4e-13  Score=108.74  Aligned_cols=196  Identities=10%  Similarity=-0.055  Sum_probs=142.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      ....+++. +++..++...++.|.+||..+++....+.. ......++++++++.+++...++.|.+||..+++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            35667774 344555556679999999999988777753 4567889998888554554478999999999988776665


Q ss_pred             cCC-----ccEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC--------
Q psy4393         109 GHS-----NYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--------  174 (247)
Q Consensus       109 ~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------  174 (247)
                      ...     .....+.+ .++.++++.. .++.|.++|+.+++.+..+.... ....+.++|+|++++++..+        
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~  200 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGY  200 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCcccc
Confidence            433     13345556 3444444433 47899999999998877776543 34678899999977776554        


Q ss_pred             --CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         175 --GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                        +.|.++|..+++....+..........++|+|+++.|+++..  .|.+||..+.+.
T Consensus       201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence              789999999888766654332335688999999999988765  899999876553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.65  E-value=7.7e-15  Score=117.49  Aligned_cols=174  Identities=10%  Similarity=0.035  Sum_probs=131.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCe---------EEE-EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------FEK-TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ++..+++++...++++|+.++ +.+|+..+..         ... ....... |..++|  +++.|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            688999999999999998874 5669754322         111 1223445 999999  89999988 8899999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      .+.........+...+..+.+.+.  .+++++.||.+.+||+..+....    +...|+|++|+|+|  ++.|..||.++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            876544455556666777776654  38888999999999999876543    23579999999999  67788999999


Q ss_pred             EEeCCCcee--eeeec-----c---CCCCCeEEEEECCCCCEEEEEE
Q psy4393         179 IWDTASGQC--LKTLI-----D---DDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       179 v~d~~~~~~--~~~~~-----~---~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      +|+...++.  .+.+.     .   .+...|..+.|.++++++++=+
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            998887764  44441     1   2457799999999999998743

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=2.5e-12  Score=103.25  Aligned_cols=206  Identities=10%  Similarity=-0.014  Sum_probs=134.5

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   92 (247)
                      .++++|||++++.+.          .++.|.+||..+.+....+...       ......+.|+|||++++++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999887776665432       122457899999999988864  478


Q ss_pred             EEEEECCCceEEEE-EecCCccEEEEEEcCCC-CEEEEeeC---------------------------------------
Q psy4393          93 LKIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSF---------------------------------------  131 (247)
Q Consensus        93 i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~---------------------------------------  131 (247)
                      |.++| .+++.+.. +.....    +.+.|++ ..+++.+.                                       
T Consensus       150 v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecC
Confidence            99999 98887766 432111    1111211 11222222                                       


Q ss_pred             --------CCCEEEEECCCCe--EEEeecC----------CCCCeEEEEECCCCCEEEEecC----------CCeEEEEe
Q psy4393         132 --------DESVRIWDVRTGK--CLKTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWD  181 (247)
Q Consensus       132 --------d~~i~v~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d  181 (247)
                              .+.+.+.|+..+.  .+..+..          .......+.++|++..++++..          .+.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                    3344444443221  1111110          0112334778999888777543          35799999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEE-EccCCccccee
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAII-CSTPLNLNYFY  244 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~  244 (247)
                      +.+++.+..+....  ....++|+|||+ .++++. .++.|.+||..+.+.+.. ......|..|+
T Consensus       305 ~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~  368 (373)
T 2mad_H          305 GLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             CCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence            99998877774333  357799999999 777776 489999999999988766 45555566554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=1.3e-12  Score=110.23  Aligned_cols=197  Identities=15%  Similarity=0.076  Sum_probs=147.4

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC--CceEEEEEecCCccE
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS--SGKCLKTLKGHSNYV  114 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v  114 (247)
                      +.+.++++...++.|.++|..+++....+.. ...+..+.++|||+++++++.++.|.+||+.  +.+.+..+..... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence            3344566677789999999999888877764 3356789999999999999999999999995  7777777765443 5


Q ss_pred             EEEEEc----CCCCEEEEeeC-CCCEEEEECCCCeEEEeecCC-----------CCCeEEEEECCCCCE-EEEecCCCeE
Q psy4393         115 FCCNFN----PQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSL-IVSSSYDGLC  177 (247)
Q Consensus       115 ~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~-l~~~~~dg~i  177 (247)
                      ..+.++    |+|+++++++. ++.+.++|..+.+.+..+...           ...+..+..++++.. ++....+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            678999    69998877654 588999999998887776532           115677888887664 4455667999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      .++|....+.+.............+.|+|+|++++++. .++.|.++|.++.+......
T Consensus       323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            99998765433322222234467789999999988766 57899999999887554443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=8.3e-13  Score=101.74  Aligned_cols=212  Identities=16%  Similarity=0.073  Sum_probs=154.1

Q ss_pred             EEEEEecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcC-CCeEEE
Q psy4393          19 LKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSD-DKTLKI   95 (247)
Q Consensus        19 ~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~v   95 (247)
                      ...++..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+... ...+.++.+.++|+.+++.+. ++.+..
T Consensus        27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~  103 (276)
T 3no2_A           27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILE  103 (276)
T ss_dssp             EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEE
T ss_pred             EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEE
Confidence            345555454 4688999999999888  34778999998 88888888764 346888999999999998877 778887


Q ss_pred             EECCCceEEEEEecC------CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393          96 WELSSGKCLKTLKGH------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      +|. +++.+..+...      ......+...++++++++...++.|..||.. ++.+..+.... ...++...+++..++
T Consensus       104 vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          104 VNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV  180 (276)
T ss_dssp             ECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred             EeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence            886 56666555421      1223345678999999999999999999998 88888887643 345567889999999


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCC-----CCCeEEEEECCCCCEEEEEEcC--------CeEEEEEC-CCcceEEEEc
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATLD--------NTLKLWDS-KVVTPAIICS  235 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~  235 (247)
                      ++..++.|..+|..+++.+-.+....     -.-+..++..++|..+++....        +..++++. .+++.+=.+.
T Consensus       181 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          181 ACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             ECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             EeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            88888899999999888776653221     1225778889999988887421        23345554 3445544444


Q ss_pred             c
Q psy4393         236 T  236 (247)
Q Consensus       236 ~  236 (247)
                      .
T Consensus       261 ~  261 (276)
T 3no2_A          261 D  261 (276)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=1.5e-13  Score=108.94  Aligned_cols=181  Identities=10%  Similarity=0.130  Sum_probs=123.7

Q ss_pred             eEEEEECCCCCEEEEEeCC---------------------------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCC
Q psy4393          30 VSSVKFSPNGEWLASSSAD---------------------------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR   82 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~d---------------------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (247)
                      +..++|+|||+.|+.++.+                           ..|.+|+..+++....+.. . .+..+.|+|+| 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            8899999999988876532                           5688899888776344444 3 78899999999 


Q ss_pred             EEEEEcCCC-------eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC--------CCEEEEECCCCeEEE
Q psy4393          83 LLVSGSDDK-------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLK  147 (247)
Q Consensus        83 ~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~  147 (247)
                      .++++..+.       ...+|.+.+++. ..+..+ ..+..+  +|+|+.++..+.+        ..|.+||  +++...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred             EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence            777765432       334443334443 333333 444443  8999988877644        3578888  555444


Q ss_pred             eecCCCCCeEE-EEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeE-EEEEC
Q psy4393         148 TLPAHSDPVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL-KLWDS  225 (247)
Q Consensus       148 ~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~vwd~  225 (247)
                      ....+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+... ...+..++|+|  .++++++.++.. .||..
T Consensus       257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG-RHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            44455667775 8999 88 88889999999999 7755543 33322 55788899999  677777776654 66665


Q ss_pred             C
Q psy4393         226 K  226 (247)
Q Consensus       226 ~  226 (247)
                      +
T Consensus       330 ~  330 (347)
T 2gop_A          330 D  330 (347)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=2.8e-11  Score=93.58  Aligned_cols=200  Identities=13%  Similarity=0.119  Sum_probs=142.5

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +..+...+.+++++++|++.++...++.|..++.. ++.... .......+..+++.++++.+++...++.|..+|.. +
T Consensus        57 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           57 VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence            33344678999999999977776667889999976 554322 22233568899999999988887778899999987 5


Q ss_pred             eEEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         102 KCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       102 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      +.... +.........+.++++++++++...++.|..+|. +++.... .......+..+++++++.++++....+.|.+
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            54322 2223456788999999997777666788999998 4543332 2233456789999999988777777788999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ||. +++............+..++++++|++.++...++.|..||..
T Consensus       214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            998 4443332222233457889999999866666567899999984

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=4.4e-13  Score=116.40  Aligned_cols=198  Identities=13%  Similarity=0.010  Sum_probs=138.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCe----------------EEEEecCCCeEE--EEEec--ccCCeEEEEECCCCCEEEEEcC
Q psy4393          30 VSSVKFSPNGEWLASSSADKL----------------IKIWGAYDGKFE--KTISG--HKLGISDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~----------------v~iw~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~~~   89 (247)
                      +.+++|+|||+.|+.+..++.                |++|++.++...  .....  +...+..+.|+|||++|+..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567899999999998877655                999998766522  22232  2344778999999999887654


Q ss_pred             -----CCeEEEEECCC------ce-EEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCe--EEEeecC
Q psy4393          90 -----DKTLKIWELSS------GK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGK--CLKTLPA  151 (247)
Q Consensus        90 -----d~~i~v~d~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~--~~~~~~~  151 (247)
                           +..|.+||+.+      +. ....+..+...+.. .|+|++..++..+..    +.|.+||+.++.  ....+..
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence                 56899999976      42 34455555544444 478888887766543    359999998764  1234444


Q ss_pred             CCC--CeEEEEECCCCCEEEEecCCCe--EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEE
Q psy4393         152 HSD--PVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLW  223 (247)
Q Consensus       152 ~~~--~i~~~~~~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vw  223 (247)
                      +..  .+..+.|++++.++++...++.  |.+||+.+++....+... ...+..++++|+++.++...    ..++|.+|
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~  410 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence            433  5778889877778888888874  666787667655554433 45677889999998776443    34799999


Q ss_pred             ECCCcc
Q psy4393         224 DSKVVT  229 (247)
Q Consensus       224 d~~~~~  229 (247)
                      |..+++
T Consensus       411 d~~tg~  416 (710)
T 2xdw_A          411 DLTKEE  416 (710)
T ss_dssp             ETTSSS
T ss_pred             ECCCCc
Confidence            998766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=3e-11  Score=93.43  Aligned_cols=203  Identities=9%  Similarity=0.085  Sum_probs=146.3

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ..+.+......+.+++++++|+..++...++.|.+|+.. ++.... +......+..+++.++++.+++...++.|..+|
T Consensus        11 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           11 EEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            344455556788999999999987776678999999987 554332 222235688999999999888777788999999


Q ss_pred             CCCceEEEE-EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE-eecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          98 LSSGKCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        98 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .. ++.... .......+..+.+++++.++++...++.|..+|.. ++... .+......+..++++++++++++...++
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  167 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN  167 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence            87 554321 22233567889999999988887778889999987 55432 2233345688999999999777776678


Q ss_pred             eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      .|..+|. +++...............++++++|.+.++....+.|.+||.
T Consensus       168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            9999998 555433222223345788999999987766666788999998

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=2.5e-13  Score=118.49  Aligned_cols=197  Identities=16%  Similarity=0.131  Sum_probs=130.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC---------
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK---------   91 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------   91 (247)
                      |...+.+++|||||++|+.+..+     ..|++||+.+++..... .+...+..++|+|| +.|+.+..++         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33467889999999999876543     35999999988765432 12222357889999 9888877654         


Q ss_pred             -----eEEEEECCCceE--EEEEec--CCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCe-E-EEeecCCCCC
Q psy4393          92 -----TLKIWELSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGK-C-LKTLPAHSDP  155 (247)
Q Consensus        92 -----~i~v~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~-~-~~~~~~~~~~  155 (247)
                           .|++|++.++..  ...+..  +...+..+.|+|+|+.++..+.++     .|++||+.++. . ...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 388999876642  222322  223477889999999888776543     79999998762 1 3444444444


Q ss_pred             eEEEEECCCCCEEEEecC----CCeEEEEeCCCc-eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         156 VSAVHFNRDGSLIVSSSY----DGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      .... ++|+|..|+..+.    ++.|.+||+.++ .....+.......+..++++ ++.++++...|+..+||..+
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            4444 3488888877664    346999998874 23344444444456667777 56677778888877776543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=7.7e-12  Score=101.66  Aligned_cols=200  Identities=12%  Similarity=0.057  Sum_probs=137.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~  105 (247)
                      .....++|+++++++++...++.|++||..++.......... ... ++|+++++.++++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            457899999999977777777899999998777665554433 233 89999999988887765  78888887654333


Q ss_pred             EE---ec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe----ecCCCCC--eEEEEECCC-CCEEEEecCC
Q psy4393         106 TL---KG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT----LPAHSDP--VSAVHFNRD-GSLIVSSSYD  174 (247)
Q Consensus       106 ~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~--i~~~~~~~~-~~~l~~~~~d  174 (247)
                      .+   .. ......+++++|+...|+.+..++.|+.||..++.....    .......  ...++++|+ +.++++...+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            33   12 334567789999555555566788899999987653222    1111122  238999995 6666666678


Q ss_pred             CeEEEEeCCCceeeeeeccCC--------------CCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceE
Q psy4393         175 GLCRIWDTASGQCLKTLIDDD--------------NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPA  231 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~  231 (247)
                      +.|..|+....  ...+....              -.....++++|+|+++++-. .+++|+.||..++...
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            89999987643  22221111              12357899999999777766 7889999997666543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=2.7e-11  Score=102.20  Aligned_cols=196  Identities=11%  Similarity=0.052  Sum_probs=140.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCeEEEEEecccCCeEEEEEC----CCCCEEEEEcC-CCeEEEEECCC
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWS----SDSRLLVSGSD-DKTLKIWELSS  100 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~  100 (247)
                      ..+..+.|+|||+++++++.++.|.+||..  +.+....+... .....++|+    |||++++++.. ++.+.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999995  66766666543 345789999    69998877665 58999999999


Q ss_pred             ceEEEEEecC-----------CccEEEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEE--EeecCCCCCeEEEEECCCCC
Q psy4393         101 GKCLKTLKGH-----------SNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCL--KTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus       101 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~  166 (247)
                      .+.+..+...           ...+..+..++++..+ +.....|.|.++|......+  ..+.. ......+.|+|+++
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCceECCCCC
Confidence            8887766422           1256677788876554 44456789999998765432  22322 33467789999999


Q ss_pred             EEEEec-CCCeEEEEeCCCceeeeeecc-C---CC-CCeEEEEECCCCCEEE-EEE-cCCeEEEEECCC
Q psy4393         167 LIVSSS-YDGLCRIWDTASGQCLKTLID-D---DN-PPVSFVKFSPNGKYIL-AAT-LDNTLKLWDSKV  227 (247)
Q Consensus       167 ~l~~~~-~dg~i~v~d~~~~~~~~~~~~-~---~~-~~v~~~~~s~~~~~l~-~~~-~dg~i~vwd~~~  227 (247)
                      +++++. .++.|.++|+.+++....+.. .   +. .... + ++|++..+. ++. .++.|.++|...
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            887655 578999999999987665543 2   11 1222 2 688855554 443 468999999877

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=3.4e-12  Score=101.89  Aligned_cols=211  Identities=13%  Similarity=0.093  Sum_probs=141.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEeccc-------CCeEEEEECCCCCEEEEEcC--CCe
Q psy4393          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGHK-------LGISDVAWSSDSRLLVSGSD--DKT   92 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~   92 (247)
                      .++++|||++++.++          .++.|.+||..+.+....+....       .....+.++|||++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999887765          35789999999988877765321       23556899999999887763  689


Q ss_pred             EEEEECCCceEEEEEecCCc-cE------EEEEEcCCCCEE--------------------------------------E
Q psy4393          93 LKIWELSSGKCLKTLKGHSN-YV------FCCNFNPQSNLI--------------------------------------V  127 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~-~v------~~~~~~~~~~~l--------------------------------------~  127 (247)
                      |.++|+.+++.+..+..... .+      .-+..+++|+++                                      +
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~  241 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  241 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence            99999999877665532100 00      001122222222                                      2


Q ss_pred             EeeCCCCEEEEECCCCe--EEEeecC----------CCCCeEEEEECCCCCEEEEecC----------CCeEEEEeCCCc
Q psy4393         128 SGSFDESVRIWDVRTGK--CLKTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASG  185 (247)
Q Consensus       128 ~~~~d~~i~v~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~  185 (247)
                      ..+.+|.+++.|+.++.  .+..+..          ..+....+++++++..+++...          ...|.++|+.++
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~  321 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  321 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence            23334555555554332  1111110          0112233677888888777642          247999999999


Q ss_pred             eeeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEEccCCccccee
Q psy4393         186 QCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYFY  244 (247)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  244 (247)
                      +.++.+....  ....+++++|++ +|+++. .++.|.++|..+.+.+..+..+..+|+|+
T Consensus       322 kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~  380 (386)
T 3sjl_D          322 ERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI  380 (386)
T ss_dssp             CEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             eEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence            9888775443  456899999997 666654 58999999999999999999999999886

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=1.9e-12  Score=103.53  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=85.5

Q ss_pred             CCCEEEEEe------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCc
Q psy4393          38 NGEWLASSS------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG  101 (247)
Q Consensus        38 ~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~  101 (247)
                      ++++++.+.      .|+.|.+||..+++....+.....+  .++|+||+++++++.          .++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            566666543      3679999999888887777665444  899999999998876          2567999999988


Q ss_pred             eEEEEEecC------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEe-ec
Q psy4393         102 KCLKTLKGH------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LP  150 (247)
Q Consensus       102 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~  150 (247)
                      +.+..+...      ......+.++|++++++++..  ++.|.+||+.+++.+.. +.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence            877766532      123456789999999998864  57899999999987776 44

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=1.1e-11  Score=96.81  Aligned_cols=210  Identities=12%  Similarity=0.124  Sum_probs=140.0

Q ss_pred             ecCCCCeEEEEECCCCCEEEE-------EeCCCeEEEEecCCCeEEEEEe----cccCCeEEEEECCC-CCEEEEEcCCC
Q psy4393          24 AGHTKAVSSVKFSPNGEWLAS-------SSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWSSD-SRLLVSGSDDK   91 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~   91 (247)
                      ........+++|+++|.++++       ...++.|.+|+..+++......    ++...+..++++++ ++++++.. ..
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            444556789999999988777       5678899999987766543222    13456889999999 76555554 44


Q ss_pred             eEEEEECCCceEEEE-Eec----CCccEEEEEEcCCCCEEEEeeCC---------------CCEEEEECCCCeEEEeecC
Q psy4393          92 TLKIWELSSGKCLKT-LKG----HSNYVFCCNFNPQSNLIVSGSFD---------------ESVRIWDVRTGKCLKTLPA  151 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~~  151 (247)
                      .|.+||.. ++.... ...    ....+..+.++++++++++...+               +.|..||.. ++..... .
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence            78889988 654332 211    11346789999999988876654               567777765 4433222 2


Q ss_pred             CCCCeEEEEEC----CCCCEEEE-ecCCCeEEEEeCC-Cceee--eee--ccCCC-CCeEEEEECCCCCEEEEEEcCCeE
Q psy4393         152 HSDPVSAVHFN----RDGSLIVS-SSYDGLCRIWDTA-SGQCL--KTL--IDDDN-PPVSFVKFSPNGKYILAATLDNTL  220 (247)
Q Consensus       152 ~~~~i~~~~~~----~~~~~l~~-~~~dg~i~v~d~~-~~~~~--~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i  220 (247)
                      +......++++    |+++.+++ ...++.|.+||.. +++..  ..+  ..... .....++++++|++.++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            22345788999    99975554 4567899999976 34321  111  11121 346779999999988888888999


Q ss_pred             EEEECCCcceEEEEccC
Q psy4393         221 KLWDSKVVTPAIICSTP  237 (247)
Q Consensus       221 ~vwd~~~~~~~~~~~~~  237 (247)
                      .+||.++++.+..+..+
T Consensus       250 ~~~d~~~g~~~~~~~~~  266 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             EEECTTCBSCSEEEECS
T ss_pred             EEEcCCCCcEeEEEeCC
Confidence            99998865544444443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=7.9e-12  Score=97.54  Aligned_cols=197  Identities=12%  Similarity=0.189  Sum_probs=134.4

Q ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCeEEEE-Eec----ccCCeEEEEECCCCCEEEEEcCC---------
Q psy4393          26 HTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKT-ISG----HKLGISDVAWSSDSRLLVSGSDD---------   90 (247)
Q Consensus        26 h~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------   90 (247)
                      +...+.+++++++ |+++++. ..+.|.+|+.. ++.... ...    ....+.+++++++|+.+++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4467889999999 7655544 44578899987 654332 211    12347899999999988777654         


Q ss_pred             ------CeEEEEECCCceEEEEEecCCccEEEEEEc----CCCCEEEEe-eCCCCEEEEECC-CCe-----EEEeecCCC
Q psy4393          91 ------KTLKIWELSSGKCLKTLKGHSNYVFCCNFN----PQSNLIVSG-SFDESVRIWDVR-TGK-----CLKTLPAHS  153 (247)
Q Consensus        91 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~v~d~~-~~~-----~~~~~~~~~  153 (247)
                            +.|..++.. ++..... ........+.++    |+++.++.+ ..++.|.+||+. .++     ....+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  567777765 4433322 222345678899    998655444 567889999986 443     222333332


Q ss_pred             -CCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCC
Q psy4393         154 -DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKV  227 (247)
Q Consensus       154 -~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~  227 (247)
                       .....++++++|.++++...++.|.+||..+++....+... ...+..++|+|+++.|+.++ .++.|..|+...
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             45788999999998888777889999999866655444322 24578899999999666554 568999999865

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=6.7e-11  Score=91.95  Aligned_cols=208  Identities=10%  Similarity=0.101  Sum_probs=136.5

Q ss_pred             cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          25 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+..---+..|+|++. ++++...++.|..|+..++... .+ .....+.+++++++|+++++.  +..|.+||.++++.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence            3444556889999655 5556667889999998776542 22 234678999999999965554  56788999987765


Q ss_pred             EEEEec----CCccEEEEEEcCCCCEEEEeeCC---------CCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEEE
Q psy4393         104 LKTLKG----HSNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       104 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      ......    ....+..+.++|+|+++++....         ..-.+|.+.. ++. ..+.........++|+|+++.|+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEE
Confidence            432221    12347789999999977754321         2234444432 332 22222223457899999998665


Q ss_pred             -EecCCCeEEEEeC--CCceee--eeec--cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         170 -SSSYDGLCRIWDT--ASGQCL--KTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       170 -~~~~dg~i~v~d~--~~~~~~--~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                       +.+.++.|.+||+  .++...  ..+.  .........++++++|++.++...++.|.+||.++++.+..+..|
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence             4556789999986  444321  1111  111234577999999987777777889999999887777776665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=5.3e-13  Score=115.63  Aligned_cols=199  Identities=11%  Similarity=-0.022  Sum_probs=131.2

Q ss_pred             EEEEECCCCCEEEEEeCCCe-------------EEEEecCCCeE--EEEEe--cccCCeEEEEECCCCCEEEEEcCCC--
Q psy4393          31 SSVKFSPNGEWLASSSADKL-------------IKIWGAYDGKF--EKTIS--GHKLGISDVAWSSDSRLLVSGSDDK--   91 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~-------------v~iw~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~--   91 (247)
                      ..++|+|||+.|+.++.+..             |++|++.++..  .....  .+...+..+.|+|||++|+..+.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999998887665             99999877652  22222  2335688999999999988776655  


Q ss_pred             --eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEee---CCCCEEEEECCCCeE--EEee-cCC-CCCeEEEEEC
Q psy4393          92 --TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGKC--LKTL-PAH-SDPVSAVHFN  162 (247)
Q Consensus        92 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~-~~~-~~~i~~~~~~  162 (247)
                        .|.+++..+++. ..+..+...+....+ +++.+++...   .++.|.+||+.++..  ...+ ..+ ...+..+.++
T Consensus       251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence              677777655543 334444444455555 5555444443   257899999977642  2233 222 3457778887


Q ss_pred             CCCCEEEEecCCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEEECCCcceEE
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~  232 (247)
                       ++.++++...++..++|... .++....+.......+..++++|+++.++...    ..++|.+||..+++..+
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~  402 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL  402 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence             66778888888887777543 34444444333344566788899998777443    34789999998776443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=1.7e-11  Score=95.67  Aligned_cols=207  Identities=11%  Similarity=0.024  Sum_probs=135.2

Q ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +........+..|+|+|+ ++++...++.|..|+. ++.. ..+......+..++++++|+++++...++.|.+|+.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            444555677899999998 5566667889999987 4443 3444455668899999999977776667889999976 5


Q ss_pred             eEEEEEecC----CccEEEEEEcCCCCEEEE----eeC-------------CCCEEEEECCCCeEEEeecCCCCCeEEEE
Q psy4393         102 KCLKTLKGH----SNYVFCCNFNPQSNLIVS----GSF-------------DESVRIWDVRTGKCLKTLPAHSDPVSAVH  160 (247)
Q Consensus       102 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~  160 (247)
                      +........    ...+..+.++++|+++++    |..             .+.|..+|..+++.....  .......++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~  194 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA  194 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence            432221111    123456889999998886    332             245778887666543322  334567899


Q ss_pred             ECCCCCEEEEecCC------CeEEEEeCCCceee--eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         161 FNRDGSLIVSSSYD------GLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       161 ~~~~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      |+|+++.|+++...      +.|.+|++......  ..+..........++++++|++. +++. +.|.+||.+ ++.+.
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~-~gv~~~~~~-g~~~~  271 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG-TGVCVFDSD-GQLLG  271 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCS-SEEEEECTT-SCEEE
T ss_pred             EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecC-CcEEEECCC-CCEEE
Confidence            99999987776654      68999998654311  11211112223458899999944 4444 459999984 44544


Q ss_pred             EEccC
Q psy4393         233 ICSTP  237 (247)
Q Consensus       233 ~~~~~  237 (247)
                      .+..+
T Consensus       272 ~~~~~  276 (305)
T 3dr2_A          272 HIPTP  276 (305)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            55444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=4.1e-11  Score=93.18  Aligned_cols=187  Identities=14%  Similarity=0.120  Sum_probs=126.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcCC---------Ce
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSDD---------KT   92 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~   92 (247)
                      ....+.+++++++|+++++ . ++.|.+||..+++........    ...+.+++++|+|+++++....         ..
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            3567899999999996554 3 567999998877654433321    2347889999999977654321         22


Q ss_pred             EEEEECCC-ceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEEC--CCCeE-----EEeecCCCCCeEEEEECC
Q psy4393          93 LKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDV--RTGKC-----LKTLPAHSDPVSAVHFNR  163 (247)
Q Consensus        93 i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~--~~~~~-----~~~~~~~~~~i~~~~~~~  163 (247)
                      -.+|.+.. ++.. .+.........++|+|+++.++ +.+.++.|.+||+  .++..     ...+..+......+++++
T Consensus       130 ~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~  208 (297)
T 3g4e_A          130 GALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA  208 (297)
T ss_dssp             EEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred             cEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence            34444432 3322 2222333457899999998665 4556788999987  45532     122222334568899999


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEEc
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATL  216 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  216 (247)
                      +|.+.++....+.|..||..+++.+..+... ...+++++|. |+++.|+.++.
T Consensus       209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TSCEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence            9988887777888999999988877665433 3467899998 89888776664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=1.4e-11  Score=99.89  Aligned_cols=201  Identities=10%  Similarity=0.065  Sum_probs=134.2

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   92 (247)
                      .++++|||++|+.+.          .++.|.++|..+.+....+.-.       ......+.++|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888775          3678999999998887776532       123456789999999988764  578


Q ss_pred             EEEEECCCceEEEEEecCCc-------cEEEEEEcCCCCE-------------------------------------EEE
Q psy4393          93 LKIWELSSGKCLKTLKGHSN-------YVFCCNFNPQSNL-------------------------------------IVS  128 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~-------------------------------------l~~  128 (247)
                      |.+.|+.+.+.+..+.....       .-..+.+++++++                                     ++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887766653211       0001223333333                                     333


Q ss_pred             eeCCCCEEEEECCCCeEE--EeecCC----------CCCeEEEEECCCCCEEEEecC----------CCeEEEEeCCCce
Q psy4393         129 GSFDESVRIWDVRTGKCL--KTLPAH----------SDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASGQ  186 (247)
Q Consensus       129 ~~~d~~i~v~d~~~~~~~--~~~~~~----------~~~i~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~  186 (247)
                      ....+.+.+.|+......  ..+...          ......++++|++..+++...          .+.|.++|+.+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            333444555555432211  011000          011122688999887776542          3579999999999


Q ss_pred             eeeeeccCCCCCeEEEEECCCCC-EEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~  234 (247)
                      .+.++....  ....++|+|||+ +++++. .++.|.|+|..+.+.+..+
T Consensus       362 vv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            887774332  246789999999 888887 5899999999999988775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=6.7e-11  Score=94.76  Aligned_cols=134  Identities=12%  Similarity=0.069  Sum_probs=108.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      .+.. |+.++|  +++.|+++ .++.|++||+...........+..++.++.+.+..  ++++..||.+.+||++++...
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc
Confidence            3566 999999  99999988 88999999987665555666677788888877653  888899999999999987654


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEee------c---CCCCCeEEEEECCCCCEEEE
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTL------P---AHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~  170 (247)
                      .    ....|.+++|+|.|  ++.|..||.+++|+...++.  ...+      .   .|...|.++.|.+++.++++
T Consensus       160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            3    23569999999999  67889999999999887774  4455      2   36678999999999988876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.47  E-value=7.4e-12  Score=108.47  Aligned_cols=199  Identities=16%  Similarity=0.180  Sum_probs=129.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--------
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--------   91 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------   91 (247)
                      +|...+..++|||||++||.+.     ....|++||+.+++...... .......++|+ |++.|+.+..+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3556788999999999988532     22479999999887654311 11113467899 999988887663        


Q ss_pred             -----eEEEEECCCceE--EEEEec---CCccEEEEEEcCCCCEEEEeeC----CCCEEEEECCCCe-EEEeecCCCCCe
Q psy4393          92 -----TLKIWELSSGKC--LKTLKG---HSNYVFCCNFNPQSNLIVSGSF----DESVRIWDVRTGK-CLKTLPAHSDPV  156 (247)
Q Consensus        92 -----~i~v~d~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~-~~~~~~~~~~~i  156 (247)
                           .|++|++.++..  ...+..   +......+.|+|+++.++....    ...++++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 499999877542  222222   2334678899999998865432    2479999997763 344454555544


Q ss_pred             EEEEECCCCCEEE-EecCC---CeEEEEeCCCcee--eeeeccCCCCCeEEEEECCCCCEEEEEEcCC---eEEEEECCC
Q psy4393         157 SAVHFNRDGSLIV-SSSYD---GLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSKV  227 (247)
Q Consensus       157 ~~~~~~~~~~~l~-~~~~d---g~i~v~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~  227 (247)
                      ... +++++..|+ .+..+   +.|..+|+.++..  ...+..+... +.  .|++++++|+....++   .|++||.+.
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            444 556666554 44333   5799999987653  2333333333 33  8899999888776544   789999875


Q ss_pred             cc
Q psy4393         228 VT  229 (247)
Q Consensus       228 ~~  229 (247)
                      ..
T Consensus       360 ~~  361 (693)
T 3iuj_A          360 KR  361 (693)
T ss_dssp             CE
T ss_pred             Ce
Confidence            43

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=2.8e-14  Score=114.57  Aligned_cols=188  Identities=14%  Similarity=0.042  Sum_probs=107.1

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCc-cEE-
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-YVF-  115 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~-  115 (247)
                      ++..+++++.||.|+.||..+++....+..  ..+.+..+..++..+++++.|+.++.||.++++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577888999999999999999998888765  3444444556777788888999999999988876554433211 110 


Q ss_pred             EEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy4393         116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  195 (247)
Q Consensus       116 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  195 (247)
                      ...+. .+..+++++.++.++.||.++|+.+..+..+.    ...++|++..+++++.++.+..||.++++.+-.+....
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            00111 34567788889999999999998877765543    13456688889999999999999999887543322110


Q ss_pred             CCCeEEEEECCCC---CEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         196 NPPVSFVKFSPNG---KYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       196 ~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                         .....++++.   ..+++++.||.|..||.++++.+-.+.
T Consensus       161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence               1112233432   567788899999999998877654433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.45  E-value=1.3e-11  Score=107.65  Aligned_cols=197  Identities=14%  Similarity=0.070  Sum_probs=129.4

Q ss_pred             EEEEECCCCCEEEEEeCCCe--------------EEEEecCCCeE--EEEEecc--cCCeEEEEECCCCCEEEEEcCC--
Q psy4393          31 SSVKFSPNGEWLASSSADKL--------------IKIWGAYDGKF--EKTISGH--KLGISDVAWSSDSRLLVSGSDD--   90 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~--------------v~iw~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--   90 (247)
                      ..++|+|| +.|+.+..++.              |++|+..++..  ...+...  ...+..+.|+|||++|+..+.+  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46889999 98887766543              88888765542  2223222  2247889999999988877644  


Q ss_pred             ---CeEEEEECCCc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCC--eEEEeecCCCCCeEEE
Q psy4393          91 ---KTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTG--KCLKTLPAHSDPVSAV  159 (247)
Q Consensus        91 ---~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~--~~~~~~~~~~~~i~~~  159 (247)
                         ..|++||+.++  +....+..+....... +.|++..++..+.+    +.|.+||+.++  .....+..+...+..+
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV  369 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence               38999999876  3134454444444443 34888888877653    45999999874  3333344444456677


Q ss_pred             EECCCCCEEEEecCCCeEEEEeCC-CceeeeeeccCCCCCeEEEEECCCCCEEEEEE----cCCeEEEEECCCcce
Q psy4393         160 HFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSKVVTP  230 (247)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~  230 (247)
                      .++ ++.++++...++..++|... +++....+.......+..++++|+++.|+...    ..++|.+||..+++.
T Consensus       370 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          370 GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            776 55677778888876666433 34444444333345678899999988666432    347899999887664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=6e-10  Score=87.77  Aligned_cols=201  Identities=14%  Similarity=0.037  Sum_probs=131.8

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          29 AVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        29 ~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      -..+.+|+|++. ++++...++.|..|+..++... .+. ....+.++.|+++|+++++. .+ .|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            356789999755 5556667789999998776543 232 34568999999999877665 33 4889999877654322


Q ss_pred             ec----CCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCe
Q psy4393         108 KG----HSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL  176 (247)
Q Consensus       108 ~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  176 (247)
                      ..    ....+..+.++|+|+++++...      .+.|..+|  +++.. .+.........++|+|+++.++.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1235788999999997765532      24566666  45432 222222346789999999866544 55789


Q ss_pred             EEEEeCC--Cc-eee--eee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         177 CRIWDTA--SG-QCL--KTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       177 i~v~d~~--~~-~~~--~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      |.+||..  ++ +..  ..+  ..........++++++|.+.++...++.|.+||. .++.+..+..+
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence            9999985  54 311  111  1112234567899999987777767789999998 44444444444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=4.2e-11  Score=95.52  Aligned_cols=206  Identities=10%  Similarity=-0.014  Sum_probs=132.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEECCCCCEEEEEcC--CCe
Q psy4393          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   92 (247)
                      .+.++|||++++.+.          .++.|.+||..+.+....+...       ......+.++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999988875          3688999999999988887543       123457899999999888764  457


Q ss_pred             EEE--EECCCceEEEEEecC------------------CccEEEEEE--------------------------cCCCCEE
Q psy4393          93 LKI--WELSSGKCLKTLKGH------------------SNYVFCCNF--------------------------NPQSNLI  126 (247)
Q Consensus        93 i~v--~d~~~~~~~~~~~~~------------------~~~v~~~~~--------------------------~~~~~~l  126 (247)
                      +.+  +|..+   +..+...                  .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88765   2222110                  000000110                          2223333


Q ss_pred             EEeeCCCCEEEEECCCCe--EEEeecCC----------CCCeEEEEECCCCCEEEEecC---------CCeEEEEeCCCc
Q psy4393         127 VSGSFDESVRIWDVRTGK--CLKTLPAH----------SDPVSAVHFNRDGSLIVSSSY---------DGLCRIWDTASG  185 (247)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~--~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~---------dg~i~v~d~~~~  185 (247)
                      +..+. +.+.+.|+....  .+..+...          ......+.++|+++.++++..         ++.+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33334 667777765432  22222111          011112679999998876543         235669999999


Q ss_pred             eeeeeeccCCCCCeEEEEECCCCCE-EEEEE-cCCeEEEEECCCcceEEEEccCCcccce
Q psy4393         186 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAAT-LDNTLKLWDSKVVTPAIICSTPLNLNYF  243 (247)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~  243 (247)
                      +.+..+....  ....++|+|||++ +++.. .++.|.|+|..+.+.+..+.....+..|
T Consensus       305 ~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i  362 (368)
T 1mda_H          305 QTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESL  362 (368)
T ss_dssp             CEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred             eEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEE
Confidence            8877664333  3567999999985 55555 5899999999999988887766655544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=2.1e-10  Score=89.47  Aligned_cols=190  Identities=12%  Similarity=0.089  Sum_probs=124.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEE----EcC-------
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVS----GSD-------   89 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------   89 (247)
                      .+...+..++++++|+++++...++.|.+|+.. ++........    ...+.++++.++|+.+++    +..       
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence            455678899999999977665556789999875 5433222111    134678999999998876    331       


Q ss_pred             ------CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeE--EEee-cCCCC
Q psy4393          90 ------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKC--LKTL-PAHSD  154 (247)
Q Consensus        90 ------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~--~~~~-~~~~~  154 (247)
                            .+.|..+|..+++.....  .......++|+|+++.++.+...      +.|++||+..+..  ...+ ....+
T Consensus       162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence                  246777887666543322  33345778999999977776654      6899999875531  1111 11233


Q ss_pred             CeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  222 (247)
                      ....++++++|++.+ ++.+ .|.+|+.. ++.+..+....  .+..++|+|+++.|..++.++..++
T Consensus       240 ~pdgi~~d~~G~lwv-~~~~-gv~~~~~~-g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWS-SSGT-GVCVFDSD-GQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CCCSEEECTTSCEEE-CCSS-EEEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCeEEECCCCCEEE-ecCC-cEEEECCC-CCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            445688999999554 4444 49999984 55555544333  3677899999999988887644443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=3.6e-10  Score=91.86  Aligned_cols=191  Identities=13%  Similarity=0.052  Sum_probs=128.5

Q ss_pred             EEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEE----ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEE
Q psy4393          33 VKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      ++|+++++.|+.+..++  .|.+++...+.....+    ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            88999999888887765  7888887655443333    21345578899999555565677788999999987653222


Q ss_pred             ----EecCCccE--EEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCC---------------CCCeEEEEECCC
Q psy4393         107 ----LKGHSNYV--FCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH---------------SDPVSAVHFNRD  164 (247)
Q Consensus       107 ----~~~~~~~v--~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~~i~~~~~~~~  164 (247)
                          ..+....-  ..++++|+ +.++++...++.|+.|+....  +..+..+               -.....++++|+
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence                11111111  27899995 666666667788999987643  2222111               134678999999


Q ss_pred             CCEEEEec-CCCeEEEEeCCCceeeeeeccC-------------CCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         165 GSLIVSSS-YDGLCRIWDTASGQCLKTLIDD-------------DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       165 ~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      |.++++-. .++.|+.||+.+++.....-..             .-.....++++++|.++++-..+++|+.+++
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99777777 7889999997777643221110             0123578999999877777777889988764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=8.8e-10  Score=86.80  Aligned_cols=184  Identities=11%  Similarity=0.058  Sum_probs=122.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcC------CCeEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSD------DKTLKIW   96 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~------d~~i~v~   96 (247)
                      ...+.+++|+++|+++++. . +.|.+||..+++........    ...+.++.++|+|+++++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4578999999999877754 3 45899998777654332211    134789999999997765542      2456666


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECC--CC-e-----EEEeecCCCCCeEEEEECCCCCE
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVR--TG-K-----CLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      +  +++.. .+.........++|+|+++.++.+ ..++.|.+||+.  ++ .     ....+.........++++++|.+
T Consensus       167 ~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          167 A--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             E--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             e--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence            6  45433 232222345688999999876554 456789999985  55 2     12223323345678999999987


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEEcC
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLD  217 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  217 (247)
                      +++...++.|..||. +++....+... ...+.+++|+ ++++.|+.++..
T Consensus       244 wva~~~~~~v~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEeCCCEEEEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEecC
Confidence            777666788999998 45555444322 3458899998 898877666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.40  E-value=1.1e-09  Score=83.08  Aligned_cols=205  Identities=11%  Similarity=0.040  Sum_probs=139.9

Q ss_pred             ceEEEEEecCCC--CeEEEEECCCCCEEEEEeC--CCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEE-EEEcCC
Q psy4393          17 YVLKFTLAGHTK--AVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLL-VSGSDD   90 (247)
Q Consensus        17 ~~~~~~~~~h~~--~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d   90 (247)
                      +....++ .|..  ....+.|++++.+.++.+.  ++.|.++|..+++....+.-... -...+++.  ++.+ ++.-.+
T Consensus         9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3344444 3443  3689999998755444443  57999999999998887653222 12344554  4444 555568


Q ss_pred             CeEEEEECCCceEEEEEecC-CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-----CeEEEEECCC
Q psy4393          91 KTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRD  164 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~  164 (247)
                      +.+.++|..+.+.+..+... ...   ..+++++..++.+..++.|.++|..+.+.+..+.....     ....+.+. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            89999999999888887643 222   23555677666666788999999999888777664321     35677777 6


Q ss_pred             CCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCCc
Q psy4393         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKVV  228 (247)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~  228 (247)
                      +..++....++.|.+.|..+++.+..+...            .....+.++|+|+++.++.+ ...+++.+.+....
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            766666656789999999999887766321            11245789999998766554 46788888876554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=9.6e-11  Score=92.99  Aligned_cols=199  Identities=12%  Similarity=0.113  Sum_probs=131.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCeEEEEEecc------cCCeEEEEECCCCCEE-EEEc---C
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLL-VSGS---D   89 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~   89 (247)
                      +|...+.+++++++|+++++-..     ++.|.+||..+++....+...      ...+..+++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35678999999999886665433     578999999888866665432      1246889999865554 5544   5


Q ss_pred             CCeEEEEECCCceEEEEEecCC-----------------------------ccEEEEEEcCCCCEEEEeeCCC-CEEEEE
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHS-----------------------------NYVFCCNFNPQSNLIVSGSFDE-SVRIWD  139 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~d~-~i~v~d  139 (247)
                      ++.|.+||..+++..+.+..+.                             ..+..++++|+++.++.+...+ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            7899999998776655442210                             1257799999999888876655 455554


Q ss_pred             CC---CCeE--------EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCC
Q psy4393         140 VR---TGKC--------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (247)
Q Consensus       140 ~~---~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~  208 (247)
                      ..   .+..        +... .+......++++++|.++++...++.|.+||..+++...............++|++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             HHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            31   1100        0111 1122345689999999999888899999999855553322221223346789999999


Q ss_pred             CEEEEEEcCCeEEEEE
Q psy4393         209 KYILAATLDNTLKLWD  224 (247)
Q Consensus       209 ~~l~~~~~dg~i~vwd  224 (247)
                      +++++.+..+++-+|.
T Consensus       303 ~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          303 YLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             CEEEEECCGGGSGGGB
T ss_pred             cEEEEeCccccccccc
Confidence            8888877655555554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=2.4e-10  Score=90.71  Aligned_cols=202  Identities=9%  Similarity=0.073  Sum_probs=130.4

Q ss_pred             CCeEEEEECCCCCEEEEEe--CCCeEEEEecCCCeEEEEE-------ecccCCeEEEEECCCCCEEEEEcC-----CCeE
Q psy4393          28 KAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSDSRLLVSGSD-----DKTL   93 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i   93 (247)
                      ..+..++++++|+.+++..  .++.+++|.+.+++.. .+       ..+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999888753  2342455554444322 11       123456899999999876665443     5789


Q ss_pred             EEEECCCceEEEEEecC------CccEEEEEEcCCCCEE-EEee---CCCCEEEEECCCCeEEEeecCCC----------
Q psy4393          94 KIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLI-VSGS---FDESVRIWDVRTGKCLKTLPAHS----------  153 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~v~d~~~~~~~~~~~~~~----------  153 (247)
                      .+||+.+++.++.+...      ......+.+++++..+ ++..   .++.|.+||+.+++....+..|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988866665432      1245778898765444 4444   57889999998877655443210          


Q ss_pred             -------------------CCeEEEEECCCCCEEEEecCCC-eEEEEeCC---Cce-----eeeeec-cCCCCCeEEEEE
Q psy4393         154 -------------------DPVSAVHFNRDGSLIVSSSYDG-LCRIWDTA---SGQ-----CLKTLI-DDDNPPVSFVKF  204 (247)
Q Consensus       154 -------------------~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~---~~~-----~~~~~~-~~~~~~v~~~~~  204 (247)
                                         ..+..++++|+++.|+++...+ .+..++..   .+.     ....+. ..+......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               1357899999999888877665 55555432   110     000000 011122345889


Q ss_pred             CCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         205 SPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       205 s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +++|.++++...++.|.+||..+++.
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             CCCCCEEEEccCCCeEEEEECCCCCE
Confidence            99999888888899999999844443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=2e-10  Score=91.77  Aligned_cols=191  Identities=11%  Similarity=0.122  Sum_probs=132.6

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEE
Q psy4393          33 VKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWE   97 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d   97 (247)
                      ....|+++.++....     ++.|.+.|..+.+....+.....+ . ++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            456789998887765     679999999999988888765555 4 99999999887765          357899999


Q ss_pred             CCCceEEEEEecCC-------ccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393          98 LSSGKCLKTLKGHS-------NYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus        98 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      ..+.+.+..+....       ..-..+.++|+|++++.+..  ++.|.++|+.+++.+..+....  . ...+....+.+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence            99998877764321       12345789999999888764  6789999999999888886532  1 12232234456


Q ss_pred             EEecCCCeEEEEeCCC-ceeeee---eccCCCCCe-EEEEE-CCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         169 VSSSYDGLCRIWDTAS-GQCLKT---LIDDDNPPV-SFVKF-SPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~~-~~~~~~---~~~~~~~~v-~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ++.+.||.+.+.++.+ ++....   .+.....++ ....| .++|++++ .+.+|+|.+.|.....
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            6777788888888865 443221   111111222 12355 46776554 6668999999986554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=2.3e-09  Score=85.95  Aligned_cols=187  Identities=10%  Similarity=0.038  Sum_probs=128.0

Q ss_pred             EECCCCCEEEEEeC--CC---eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEEC
Q psy4393          34 KFSPNGEWLASSSA--DK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWEL   98 (247)
Q Consensus        34 ~~s~~~~~l~~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~   98 (247)
                      ...|++++++.+..  .+   .|.++|..+++....+.....+  .++++|||++++++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887777653  22   7899999988887777654433  899999999998875          3678999999


Q ss_pred             CCceEEEEEecC-------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEe-ecCCCCCeEEEEECCCC-CE
Q psy4393          99 SSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDG-SL  167 (247)
Q Consensus        99 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~  167 (247)
                      .+.+.+..+...       ...-..+.++|+|++++.+..  ++.|.++| .+++.+.. +.... .   +.+.|++ ..
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCce
Confidence            988776665432       122346889999999998874  47899999 99988777 65432 2   3444554 35


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeec-----cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +++.+.||.+.++|. +++......     ...........+.+++..++..+.++.+.+.|....
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            566678999999999 776552211     111111223456677666655557889999988543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=4.3e-10  Score=91.23  Aligned_cols=186  Identities=12%  Similarity=0.135  Sum_probs=130.0

Q ss_pred             CCCCEEEEEeCC-----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCc
Q psy4393          37 PNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG  101 (247)
Q Consensus        37 ~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~  101 (247)
                      +++++++.+...     +.|.++|..+.+....+.....+  .+.++||+++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            467777665543     69999999999998888765555  899999999887775          3678999999999


Q ss_pred             eEEEEEecC-------CccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC-CEEEEe
Q psy4393         102 KCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS  171 (247)
Q Consensus       102 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  171 (247)
                      +.+..+...       ......+.++|++++++.+..  ++.|.++|+.+.+.+..+.....    ....|++ ..+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            887776532       112335689999999998864  57899999999998888775321    2233333 445555


Q ss_pred             cCCCeEEEEeCCCceeeee---eccCCCCC-eEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         172 SYDGLCRIWDTASGQCLKT---LIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~---~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +.||.+.+.+..+++....   .+.....+ ...+.+++++..++..+..++|.+.|....
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            6677777777755543321   11111111 123567999998888888899999997543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=4.7e-09  Score=78.89  Aligned_cols=193  Identities=10%  Similarity=0.114  Sum_probs=130.6

Q ss_pred             ceEEEEEecCC--CCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCC
Q psy4393          17 YVLKFTLAGHT--KAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK   91 (247)
Q Consensus        17 ~~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~   91 (247)
                      +....++ .|.  .-...+.|+ ++.++.+.+.+|  .|+++|..+++....+.-.. ........++++.|. ..-.++
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence            3344444 343  335789998 676666666665  89999999999888775432 232222333445554 444688


Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----CCeEEEEECCCCC
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNRDGS  166 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~  166 (247)
                      .+.+||.++.+.+.++...... +.  +++++..++....++.|+++|..+.+.+..+....     ..++.+.+. +|+
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG-~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG-WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC-CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECccCcEEEEEECCCCc-eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            9999999999988888754322 22  33556666666667889999999988877766532     234456775 677


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccC-----------CCCCeEEEEECCCCCEEEEEEc
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDD-----------DNPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~  216 (247)
                      .++..-.+..|.+.|..+++.+..+...           .....+.|+++|+++.|+..+.
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6666667889999999999887665321           1234588999999887777763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.26  E-value=3.3e-09  Score=85.70  Aligned_cols=189  Identities=14%  Similarity=0.178  Sum_probs=128.2

Q ss_pred             CCCCEEEE-EeCCCeEEEEecCCC----eEEEEEec-------ccCCeEEEEECCCCCEEEEEcCC------CeEEEEEC
Q psy4393          37 PNGEWLAS-SSADKLIKIWGAYDG----KFEKTISG-------HKLGISDVAWSSDSRLLVSGSDD------KTLKIWEL   98 (247)
Q Consensus        37 ~~~~~l~~-~~~dg~v~iw~~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~   98 (247)
                      +++++|+. +..++.|.++|..+.    +....+..       ....-..+...|+| .++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887765 557789999998543    44455521       11134567788999 76666555      78999999


Q ss_pred             CCceEEEEEecCCc---cEEEEEEcCCCCEEEEee-------------------CCCCEEEEECCCCeEEEeecCCC--C
Q psy4393          99 SSGKCLKTLKGHSN---YVFCCNFNPQSNLIVSGS-------------------FDESVRIWDVRTGKCLKTLPAHS--D  154 (247)
Q Consensus        99 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~d~~i~v~d~~~~~~~~~~~~~~--~  154 (247)
                      ++.+.+..+.....   .-..+.|+|+++.+++..                   .+..|.+||+.+++.+..+....  .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99988887753222   233467899999999885                   36789999999988887776642  1


Q ss_pred             CeEEEEE--CCCCCEEEEecC------CCeEEEEeCCCceee--eee--cc----C-----------CCCCeEEEEECCC
Q psy4393         155 PVSAVHF--NRDGSLIVSSSY------DGLCRIWDTASGQCL--KTL--ID----D-----------DNPPVSFVKFSPN  207 (247)
Q Consensus       155 ~i~~~~~--~~~~~~l~~~~~------dg~i~v~d~~~~~~~--~~~--~~----~-----------~~~~v~~~~~s~~  207 (247)
                      ....+.|  +|+++++++++.      ++.|.+|....++..  +.+  ..    .           .......+.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            2344555  999998887764      557766554333211  110  00    0           0123567889999


Q ss_pred             CCEEEEEEc-CCeEEEEECC
Q psy4393         208 GKYILAATL-DNTLKLWDSK  226 (247)
Q Consensus       208 ~~~l~~~~~-dg~i~vwd~~  226 (247)
                      |++|+++.. .+.|.+||..
T Consensus       332 GrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEeCCCCEEEEEEec
Confidence            999998875 6899999985

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.4e-09  Score=94.15  Aligned_cols=198  Identities=13%  Similarity=0.074  Sum_probs=128.6

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------eEEEEecCCCeE--EEEEec---ccCCeEEEEECCCCCEEEEEcC---
Q psy4393          31 SSVKFSPNGEWLASSSADK-------------LIKIWGAYDGKF--EKTISG---HKLGISDVAWSSDSRLLVSGSD---   89 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg-------------~v~iw~~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---   89 (247)
                      ..++|+ ||+.|+.+..+.             .|++|++.++..  ......   +......+.|+|||++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 999988877663             388898765432  222322   2334678999999998754432   


Q ss_pred             -CCeEEEEECCCce-EEEEEecCCccEEEEEEcCCCCEEEEee-CC---CCEEEEECCCCeE--EEeecCCCCCeEEEEE
Q psy4393          90 -DKTLKIWELSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGS-FD---ESVRIWDVRTGKC--LKTLPAHSDPVSAVHF  161 (247)
Q Consensus        90 -d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~  161 (247)
                       ...++++|+.++. ....+..+....... +++++..++..+ .+   +.|..+|+.++..  ...+..+...+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             3589999987763 334455444444443 566666555443 33   5689999987653  234445554444  78


Q ss_pred             CCCCCEEEEecCC-C--eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC----CeEEEEECCCcceEEE
Q psy4393         162 NRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDSKVVTPAII  233 (247)
Q Consensus       162 ~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~  233 (247)
                      ++++..|+....+ +  .|.+||+..+. ...+.......+..+.++++++.|+....+    +.+..||..+++....
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l  411 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY  411 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence            8888887766544 3  68899987554 333333334456677888898877766555    7999999877654433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.23  E-value=6e-08  Score=72.26  Aligned_cols=195  Identities=10%  Similarity=0.088  Sum_probs=130.6

Q ss_pred             CCCceEEEEEecCC--CCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCeEEEEEecccCC-eEEEEECCCCCEEEEEc
Q psy4393          14 KPNYVLKFTLAGHT--KAVSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGS   88 (247)
Q Consensus        14 ~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~   88 (247)
                      .-.+....++ .|.  .-...+.|+. +.+..+.+.+  +.|+.+|..+++....+...... -..++.. .+......-
T Consensus         6 ~~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw   82 (243)
T 3mbr_X            6 TQGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTW   82 (243)
T ss_dssp             BCCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEES
T ss_pred             ccceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEe
Confidence            3445555555 343  4577899986 5555565654  48999999999988877543221 1223333 233344555


Q ss_pred             CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-----CCeEEEEECC
Q psy4393          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNR  163 (247)
Q Consensus        89 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~i~~~~~~~  163 (247)
                      .++.+.+||.++.+.+.++...... +.++  +++..++.+..++.|+++|..+.+.+..+....     ..++.+.+. 
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-  158 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence            6889999999999988888754332 3343  455556655668889999999988877766532     234556655 


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEEE
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      +|+.++....+..|.+.|..+++.+..+...            .....+.|+++|+++.|...+
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6776666666889999999999887665311            123568899999887776666

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.22  E-value=5.5e-09  Score=78.55  Aligned_cols=180  Identities=9%  Similarity=0.037  Sum_probs=125.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeE--EEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      .....+.|+ ++.+..+.+.+|.|+++|..+++....+ - .....  .+++.. +......-.++.+.+||.++.+.+.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            335788887 3566667778889999999999877766 2 22332  355543 3444555678899999999999888


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-----CeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ++...... +.++  +++..++.+..++.|+++|..+.+.+..+.....     .++.+.|. +|+.++....+..|.+.
T Consensus       131 ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            88754322 2333  5567777776788999999999988777664321     34566666 77766666678899999


Q ss_pred             eCCCceeeeeeccC------------CCCCeEEEEECCCCCEEEEEE
Q psy4393         181 DTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       181 d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      |..+++.+..+...            .....+.||++|+++.|+..+
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999877665321            123568899999877666555

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=8.4e-09  Score=89.20  Aligned_cols=189  Identities=12%  Similarity=0.125  Sum_probs=129.8

Q ss_pred             CCeEEEEecCCCeEEEEEeccc-------------------------------CCeEEEEECCCCCEEEEEcCCCe----
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHK-------------------------------LGISDVAWSSDSRLLVSGSDDKT----   92 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~----   92 (247)
                      +|.|..||..+++....+....                               ..-..++++|++.+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999887765210                               00124678888888888887763    


Q ss_pred             ---------------EEEEECCCceEEEEEecC--C-------ccEEEEEEcCCCC---EEEEeeCCCCEEEEECCCCeE
Q psy4393          93 ---------------LKIWELSSGKCLKTLKGH--S-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC  145 (247)
Q Consensus        93 ---------------i~v~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~  145 (247)
                                     |..+|.++++.+..++..  .       ..........++.   .++.++.+|.++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999988776542  1       1111122223454   788899999999999999988


Q ss_pred             EEeecCCCC---------------------------------------CeEEEEECCCCCEEEEecC-------------
Q psy4393         146 LKTLPAHSD---------------------------------------PVSAVHFNRDGSLIVSSSY-------------  173 (247)
Q Consensus       146 ~~~~~~~~~---------------------------------------~i~~~~~~~~~~~l~~~~~-------------  173 (247)
                      +........                                       ....++++|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            743321110                                       0112678888777776521             


Q ss_pred             --------------------------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393         174 --------------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (247)
Q Consensus       174 --------------------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  221 (247)
                                                      +|.+..||+.+++.+-......  ++..-.+...+.+++.++.||.++
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEE
Confidence                                            3779999999998664443221  222224556778999999999999


Q ss_pred             EEECCCcceEEEEccCC
Q psy4393         222 LWDSKVVTPAIICSTPL  238 (247)
Q Consensus       222 vwd~~~~~~~~~~~~~~  238 (247)
                      .||.++++.+-.+..+.
T Consensus       500 a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          500 AYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             EEETTTCCEEEEEECSS
T ss_pred             EEECCCCccceeeeCCC
Confidence            99999999888877664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=4.9e-09  Score=90.45  Aligned_cols=189  Identities=12%  Similarity=0.149  Sum_probs=132.7

Q ss_pred             CCeEEEEecCCCeEEEEEecccCC--------------------------------eEEEEECCCCCEEEEEcCCC----
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLG--------------------------------ISDVAWSSDSRLLVSGSDDK----   91 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~d~----   91 (247)
                      +|.|+.+|..+++....+......                                ...++++|++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999988776532111                                12467888888888877664    


Q ss_pred             ---------------eEEEEECCCceEEEEEecCC---------ccEEEEEEcCCC---CEEEEeeCCCCEEEEECCCCe
Q psy4393          92 ---------------TLKIWELSSGKCLKTLKGHS---------NYVFCCNFNPQS---NLIVSGSFDESVRIWDVRTGK  144 (247)
Q Consensus        92 ---------------~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~  144 (247)
                                     .|..+|.++++....++...         ..........+|   ..++.++.+|.++++|.++|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           48999999998877665321         111122333466   678899999999999999999


Q ss_pred             EEEeecCCCC-----------Ce------------------------EEEEECCCCCEEEEecC----------------
Q psy4393         145 CLKTLPAHSD-----------PV------------------------SAVHFNRDGSLIVSSSY----------------  173 (247)
Q Consensus       145 ~~~~~~~~~~-----------~i------------------------~~~~~~~~~~~l~~~~~----------------  173 (247)
                      .+..+.....           ++                        ..++++|++.++++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            8765542210           01                        14678898888777532                


Q ss_pred             ---------------------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         174 ---------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       174 ---------------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                                                 .|.|..||+.+++.+-.....  .++....+..++..++.++.||.+++||.+
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence                                       278999999999865444322  222233455677888999999999999999


Q ss_pred             CcceEEEEccCC
Q psy4393         227 VVTPAIICSTPL  238 (247)
Q Consensus       227 ~~~~~~~~~~~~  238 (247)
                      +++++-.+..+.
T Consensus       507 tG~~lw~~~~~~  518 (677)
T 1kb0_A          507 TGEKLWEAPTGT  518 (677)
T ss_dssp             TCCEEEEEECSS
T ss_pred             CCceeeeeeCCC
Confidence            999888877665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.15  E-value=2.4e-07  Score=70.57  Aligned_cols=192  Identities=6%  Similarity=-0.036  Sum_probs=116.7

Q ss_pred             CEEEEEeCCCeEEEEecCCCeE-----EEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEecCCcc
Q psy4393          40 EWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNY  113 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~  113 (247)
                      ++|+.+.. +.|+.++......     ...+.........++|+++++.|+ +...++.|..++.........+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            44555443 4677777654322     112222223467899999765554 5556789999998765433333333345


Q ss_pred             EEEEEEcCCCCEEE-EeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC---CCeEEEEeCCCceeee
Q psy4393         114 VFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLK  189 (247)
Q Consensus       114 v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~  189 (247)
                      ...+++++++..++ +....+.|.++++..................++++|++..|+.+..   .+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            67889998755554 4455678999998643322222222245688999997665555543   3688888876432 22


Q ss_pred             eeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393         190 TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  233 (247)
                      .+.......-..++++|++..|+.+. ..++|.++|.........
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  204 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence            22222223457899999888777666 457999999876544333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.13  E-value=7.5e-07  Score=67.80  Aligned_cols=202  Identities=9%  Similarity=0.006  Sum_probs=126.7

Q ss_pred             CeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEE
Q psy4393          29 AVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT  106 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~  106 (247)
                      .+..++|++++..|+.+ ..++.|..++.........+.........+++++++..+ ++....+.|.+++.........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            46789999976665544 456889999986554433333333467889999976555 4555678999999865432222


Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeC---CCCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCCEEEE-ecCCCeEEEEe
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWD  181 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d  181 (247)
                      ..........++++|++..++.+..   .+.|..+++.... ...+ .........+++++++..|+. -...+.|.++|
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2222245678899996665555443   3678888875432 2222 222345688999998766654 44567999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ........ +......+ ..++..  +..|+.+. ..+.|.++|..+++.+..+.
T Consensus       196 ~~g~~~~~-~~~~~~~P-~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          196 PAQPGRRK-VLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TTEEEEEE-EEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCceEE-EecCCCCc-eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            87644322 22222222 455554  45666655 46899999998877666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=1e-07  Score=77.02  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=123.1

Q ss_pred             eEEEEECCCCCEEEEEeCC------CeEEEEecCCCeEEEEEecccCC---eEEEEECCCCCEEEEEc------------
Q psy4393          30 VSSVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSRLLVSGS------------   88 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~------------   88 (247)
                      -..+..+|+| .++++..+      |.+.++|..+.+....+.....+   -.++.|+|+++.+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            3456778999 65554433      78999999988888777532221   23577899999888874            


Q ss_pred             -------CCCeEEEEECCCceEEEEEecCC--ccEEEEEE--cCCCCEEEEeeC------CCCEEEEECCCCeE--EEe-
Q psy4393          89 -------DDKTLKIWELSSGKCLKTLKGHS--NYVFCCNF--NPQSNLIVSGSF------DESVRIWDVRTGKC--LKT-  148 (247)
Q Consensus        89 -------~d~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~l~~~~~------d~~i~v~d~~~~~~--~~~-  148 (247)
                             ....|.+||+.+++.+..+....  .....+.|  +|++++++.+++      ++.|.+|....++.  .+. 
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   36799999999888777776531  23344555  999998888774      45776665443321  111 


Q ss_pred             -ecCC----------------CCCeEEEEECCCCCEEEEecC-CCeEEEEeCCC---ceeeeeeccCCC---------C-
Q psy4393         149 -LPAH----------------SDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTAS---GQCLKTLIDDDN---------P-  197 (247)
Q Consensus       149 -~~~~----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~~---------~-  197 (247)
                       +...                ......+.+++||++|+++.. .+.|.+||+..   .+.+..+.....         . 
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence             1110                134577899999999887765 57999999853   233433332210         1 


Q ss_pred             ---CeEEEEECCCCCEEEEEE
Q psy4393         198 ---PVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       198 ---~v~~~~~s~~~~~l~~~~  215 (247)
                         .-..++++|||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence               125688999999999988

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.08  E-value=4e-07  Score=71.32  Aligned_cols=211  Identities=10%  Similarity=0.081  Sum_probs=130.7

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-------------------ccCCeEEEEECC-C
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-------------------HKLGISDVAWSS-D   80 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~   80 (247)
                      +.+.+.-....+++|+++|++++++..++.|..|+..++........                   .......+++.+ +
T Consensus        12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            44544444567889999999788888889999998766544322110                   112467899997 5


Q ss_pred             CCEEEEEcCCCeEEEEECCCceEEEEEec-----CCccEEEEEEcC-CCCEEEEeeC-----------------CCCEEE
Q psy4393          81 SRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNFNP-QSNLIVSGSF-----------------DESVRI  137 (247)
Q Consensus        81 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~v  137 (247)
                      ++ |+.+...+.+..+|..++.. ..+..     .......+.+.+ +|++.++...                 ++.|..
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            55 44444445578888765532 22211     112357788999 8987776432                 366888


Q ss_pred             EECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCCce--eeeeeccCCCCCeEEEEECCCCCEEEEE
Q psy4393         138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~  214 (247)
                      +|..+++....... ......++++|+++.|+++ ...+.|.+|++....  ....+... .. ...++++++|.+.++.
T Consensus       170 ~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          170 YDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEE
T ss_pred             EeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEe
Confidence            89876654222111 1223568999999866555 556889999987421  11111111 12 5678999999866665


Q ss_pred             Ec----------CCeEEEEECCCcceEEEEccC
Q psy4393         215 TL----------DNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       215 ~~----------dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ..          .+.|..+|.+ ++.+..+..+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~  278 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP  278 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence            44          4678888875 4555555544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=2.1e-08  Score=86.51  Aligned_cols=195  Identities=12%  Similarity=0.147  Sum_probs=132.0

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------eEEEEecCCCeEEEEEecccC---------CeEEEEECCCC-
Q psy4393          31 SSVKFSPNGEWLASSSADK-------------------LIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDS-   81 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~-   81 (247)
                      ..++++|++..++.+..++                   .|..+|..+++....+.....         ...-+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578889888888776553                   489999999998877653211         11112223366 


Q ss_pred             --CEEEEEcCCCeEEEEECCCceEEEEEecCC-----------ccE------------------------EEEEEcCCCC
Q psy4393          82 --RLLVSGSDDKTLKIWELSSGKCLKTLKGHS-----------NYV------------------------FCCNFNPQSN  124 (247)
Q Consensus        82 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~  124 (247)
                        ..++.++.+|.++++|..+++.+..+....           ..+                        ..++++|+..
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              578899999999999999998876554221           001                        1357788888


Q ss_pred             EEEEeeC-------------------------------------------CCCEEEEECCCCeEEEeecCCCCCeEEEEE
Q psy4393         125 LIVSGSF-------------------------------------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (247)
Q Consensus       125 ~l~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~  161 (247)
                      ++++...                                           .+.|..||+.+++.+...... .+.....+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcce
Confidence            8877543                                           167999999999987776533 23333345


Q ss_pred             CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE-Ec----------------CCeEEEEE
Q psy4393         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL----------------DNTLKLWD  224 (247)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~----------------dg~i~vwd  224 (247)
                      ...+.+++.++.+|.+++||.++++.+..+.........-+.+.++|+.++.. +.                .+.+.+|.
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~  564 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV  564 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence            55677888899999999999999998877754432222234566788755443 22                36777777


Q ss_pred             CC
Q psy4393         225 SK  226 (247)
Q Consensus       225 ~~  226 (247)
                      +.
T Consensus       565 l~  566 (677)
T 1kb0_A          565 VG  566 (677)
T ss_dssp             ET
T ss_pred             cc
Confidence            65

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.06  E-value=5.5e-08  Score=81.22  Aligned_cols=186  Identities=11%  Similarity=0.116  Sum_probs=128.8

Q ss_pred             CCCCEEEEEeC-CCeEEEEecCCCeEEEEEecc-cCCeEEEEE-C-CCCCEEEEEcC------------------CCeEE
Q psy4393          37 PNGEWLASSSA-DKLIKIWGAYDGKFEKTISGH-KLGISDVAW-S-SDSRLLVSGSD------------------DKTLK   94 (247)
Q Consensus        37 ~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~   94 (247)
                      +||++++.+.. ++.|.+.|..+.+....+.-. ......+++ + |+++++++++.                  ++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48888877554 567999999998887755432 234778887 5 99999988842                  35789


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC--------------------------------------CEE
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------------------------------------SVR  136 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~  136 (247)
                      +.|..+.+...++.... .-..++.+|+|+++++.+.+.                                      .+.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988777765322 234567899999888877443                                      366


Q ss_pred             EEECCC--CeE-EEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCce------------eeeeeccCCCCCeE
Q psy4393         137 IWDVRT--GKC-LKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ------------CLKTLIDDDNPPVS  200 (247)
Q Consensus       137 v~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------~~~~~~~~~~~~v~  200 (247)
                      +.|.++  ++. +..+... ....++.++|||+++++++ .+..+.++|+.+.+            .....  .-...-.
T Consensus       258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~  334 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPL  334 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEE
T ss_pred             EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcc
Confidence            777766  433 3334322 2335689999999877655 56799999998653            12222  2223456


Q ss_pred             EEEECCCCCEEEE-EEcCCeEEEEECCC
Q psy4393         201 FVKFSPNGKYILA-ATLDNTLKLWDSKV  227 (247)
Q Consensus       201 ~~~~s~~~~~l~~-~~~dg~i~vwd~~~  227 (247)
                      .++|+|+| ++++ .-.|+.|.+||...
T Consensus       335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          335 HTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             eEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            78999999 5554 45799999999876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=2.1e-11  Score=97.84  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCC-CeE-
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-PVS-  157 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~-  157 (247)
                      ++..+++++.|+.++.||..+++.+..+..  ..+.+..+..++..+++++.|+.++.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999998877765  3343444456677788888999999999998877655543211 000 


Q ss_pred             EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      +..+. ++..+++++.++.+..||..+++.+-.+....     ...++|++..+++++.|+.|+.||.++++.+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            00111 34467788889999999999988764443221     1345678889999999999999999887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=5.3e-08  Score=76.21  Aligned_cols=192  Identities=12%  Similarity=0.036  Sum_probs=124.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      +...+.++...+++. +..++.++.+..++.. ++...........+.++...+++...+..   +.+..+| .+++...
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~  208 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW  208 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE
Confidence            344456667777776 4556778899999987 77666665545556677777777755444   7788899 6666665


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCc
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (247)
                      ........+.++...+++.+. .++.++.+..+|. ++..+..+......+..+...+++. |.+++.+|.+..+|. ++
T Consensus       209 ~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          209 NFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DG  284 (330)
T ss_dssp             EECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TS
T ss_pred             EEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CC
Confidence            555444556677778777654 4566778888874 4555555554443344455666665 556777888999996 55


Q ss_pred             eeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       186 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +....+... ...+..+..+++|+ |..++.+|.+++...+...
T Consensus       285 ~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          285 TEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             CEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred             cEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence            544443322 23445566777775 6678889999998765543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.02  E-value=4.6e-08  Score=84.63  Aligned_cols=181  Identities=14%  Similarity=0.180  Sum_probs=120.8

Q ss_pred             EEEECCCCCEEEEEeCCCe-------------------EEEEecCCCeEEEEEeccc---------CCeEEEEECCCCC-
Q psy4393          32 SVKFSPNGEWLASSSADKL-------------------IKIWGAYDGKFEKTISGHK---------LGISDVAWSSDSR-   82 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~-------------------v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~-   82 (247)
                      .++++|++.+++.+..++.                   |.-+|..+++....+....         .+..-.....+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788888888888877653                   9999999999888776421         1111112222454 


Q ss_pred             --EEEEEcCCCeEEEEECCCceEEEEEecCC----------------------------cc-----------EEEEEEcC
Q psy4393          83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHS----------------------------NY-----------VFCCNFNP  121 (247)
Q Consensus        83 --~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------------------~~-----------v~~~~~~~  121 (247)
                        .++.++.+|.++++|.++++.+.......                            ..           ...++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              68889999999999999998764332110                            00           01257788


Q ss_pred             CCCEEEEeeC---------------------------------------------CCCEEEEECCCCeEEEeecCCCCCe
Q psy4393         122 QSNLIVSGSF---------------------------------------------DESVRIWDVRTGKCLKTLPAHSDPV  156 (247)
Q Consensus       122 ~~~~l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~i  156 (247)
                      +..++++...                                             +|.|+.||+.+++.+...+.+. +.
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~  477 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF  477 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence            8777776522                                             3679999999999887766543 22


Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         157 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      ..-.+...+.+++.++.||.++.||.++++.+-.+.........-+.|..+|+..++
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            222444567788889999999999999999886664443221122456778875444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.00  E-value=2.7e-06  Score=64.14  Aligned_cols=210  Identities=17%  Similarity=0.178  Sum_probs=135.5

Q ss_pred             CCCCceEEEE---EecCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEEEEE
Q psy4393          13 PKPNYVLKFT---LAGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        13 ~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~   87 (247)
                      +.|.|.+...   +.+-...+..++|+|++..|+ +...++.|...|.. ++....+.- .......+++.+++.++++.
T Consensus         9 ~l~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~   87 (255)
T 3qqz_A            9 SFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD   87 (255)
T ss_dssp             CCTTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE
T ss_pred             CccceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE
Confidence            4555666554   445667899999999877555 46778888888887 666666532 22457788999888776776


Q ss_pred             cCCCeEEEEECCCceE---EEEEe------cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC---CeEEEee------
Q psy4393          88 SDDKTLKIWELSSGKC---LKTLK------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKTL------  149 (247)
Q Consensus        88 ~~d~~i~v~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~------  149 (247)
                      -.++.+.++++.....   +....      ........++|+|.++.++++.+.....+|....   ...+...      
T Consensus        88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~  167 (255)
T 3qqz_A           88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ  167 (255)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred             CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence            6778898988765432   22221      1122357899999988777777665555555531   1111111      


Q ss_pred             -cCCCCCeEEEEECCCCC-EEEEecCCCeEEEEeCCCceeeeeeccCC--------CCCeEEEEECCCCCEEEEEEcCCe
Q psy4393         150 -PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNT  219 (247)
Q Consensus       150 -~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~  219 (247)
                       ..+......++++|... +++.......+..+|... +.+..+....        ...-..++|+++|+ |+..++-+.
T Consensus       168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~  245 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNR  245 (255)
T ss_dssp             HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTE
T ss_pred             cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCce
Confidence             11223467899998654 555666677888898764 4444332221        23557899999997 555577788


Q ss_pred             EEEEEC
Q psy4393         220 LKLWDS  225 (247)
Q Consensus       220 i~vwd~  225 (247)
                      +.+|..
T Consensus       246 ~y~f~~  251 (255)
T 3qqz_A          246 FYRFTP  251 (255)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.95  E-value=1.5e-07  Score=78.65  Aligned_cols=198  Identities=11%  Similarity=0.117  Sum_probs=130.4

Q ss_pred             CCeEEEEE-C-CCCCEEEEEe------------------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE
Q psy4393          28 KAVSSVKF-S-PNGEWLASSS------------------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        28 ~~v~~~~~-s-~~~~~l~~~~------------------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (247)
                      .....+++ + |+++++++++                  .++.+.+.|..+.+....+.-.. ....++.+|+|++++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            45678887 5 8999998874                  24578899998888777766433 34567899999998887


Q ss_pred             cCCC--------------------------------------eEEEEECCC--ceE-EEEEecCCccEEEEEEcCCCCEE
Q psy4393          88 SDDK--------------------------------------TLKIWELSS--GKC-LKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        88 ~~d~--------------------------------------~i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      +.+.                                      .|.+.|..+  ++. +..+... ....++.++|||+++
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHL  291 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEE
Confidence            7543                                      255666665  333 3333322 124568899999977


Q ss_pred             EEe-eCCCCEEEEECCCCe------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC---------
Q psy4393         127 VSG-SFDESVRIWDVRTGK------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---------  184 (247)
Q Consensus       127 ~~~-~~d~~i~v~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------  184 (247)
                      +.. ..+..+.++|+.+.+            ......... ....++|+|+|....+.-.+++|.+||+..         
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            665 467789999998542            233444433 457789999994445566799999999876         


Q ss_pred             -ceeeeeeccCCCCCe-E----EEEECCCCCEEEEEEc--CCeE-----------EEEECCCcc
Q psy4393         185 -GQCLKTLIDDDNPPV-S----FVKFSPNGKYILAATL--DNTL-----------KLWDSKVVT  229 (247)
Q Consensus       185 -~~~~~~~~~~~~~~v-~----~~~~s~~~~~l~~~~~--dg~i-----------~vwd~~~~~  229 (247)
                       .+.+.++..+.. +- .    .+.++|||++|++...  ..++           -++|+...+
T Consensus       371 ~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          371 VDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cceeEEEeecccc-cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence             333333322211 11 1    1245899999998763  2344           788886544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.95  E-value=2.4e-07  Score=74.08  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=117.0

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCeEEEEEeccc---------CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHK---------LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      .+..+++++.++.|..+|..+++.........         ..+.. ....++..+++++.++.+..+|.++++......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            45677778888999999999998877665421         12221 112245678888889999999999998776655


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe-----EEEEECCCCCEEEEecCCCeEEEEeCC
Q psy4393         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (247)
                      ............  +..++.++.++.+..+|.++++.+..........     ......  +..+++++.++.+..+|..
T Consensus       131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            432211111122  3577778889999999999998877665432111     111222  3467778889999999999


Q ss_pred             CceeeeeeccCCCCC---eE---EEEECC--CCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         184 SGQCLKTLIDDDNPP---VS---FVKFSP--NGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       184 ~~~~~~~~~~~~~~~---v~---~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      +++.+-.........   +.   .+...|  .+..++.++.++.+..+|.++++.+-.
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence            887654432211000   00   000011  235666667777788887776655433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=6.6e-07  Score=71.55  Aligned_cols=188  Identities=11%  Similarity=0.077  Sum_probs=116.5

Q ss_pred             EEEEEeCCCeEEEEecCCCeEEEEEecccCCe-----EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc--
Q psy4393          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGI-----SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY--  113 (247)
Q Consensus        41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--  113 (247)
                      .++.++.++.+..+|..+++............     .....  .+..++.+..++.+..+|..+++...........  
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            45556667777777777776665554321110     11111  2456777888899999999998876655422110  


Q ss_pred             -----EEEEEEcC--CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce
Q psy4393         114 -----VFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (247)
Q Consensus       114 -----v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (247)
                           +..+...|  .+..++.++.++.+..+|.++++.+.....  .....+..  ++..+++++.++.+..+|..+++
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                 00000111  245677778899999999999987766553  23344444  35667778889999999999988


Q ss_pred             eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      .+-.........+.....  .+..|+.++.+|.|.++|.++++.+-....
T Consensus       299 ~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            654433111111111222  256788999999999999999887655544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.93  E-value=5.5e-07  Score=68.31  Aligned_cols=160  Identities=14%  Similarity=0.065  Sum_probs=110.8

Q ss_pred             eEEEEECCCCCEEEEEcC--CCeEEEEECCCceEEEEEecCCc-cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe
Q psy4393          72 ISDVAWSSDSRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (247)
                      ...+.|++++.++++.+.  ++.|+++|+.+++.+..+..... ....+.+.. +.+.++.-.++.+.++|..+.+.+..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence            578999998755555443  57999999999998877653222 223444442 23444445678899999999998888


Q ss_pred             ecCC-CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC----CCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         149 LPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       149 ~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                      +... ...   ..+++|++.++++..++.+.++|..+.+....+.....    ...+.+.|. +|+..+....++.|.+-
T Consensus       102 i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          102 FTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            8654 222   33556777777777788999999999887766543221    135677787 67544444467899999


Q ss_pred             ECCCcceEEEEcc
Q psy4393         224 DSKVVTPAIICST  236 (247)
Q Consensus       224 d~~~~~~~~~~~~  236 (247)
                      |..+++.+..+..
T Consensus       178 D~~tg~V~~~I~~  190 (266)
T 2iwa_A          178 SAKDGTLLGWILL  190 (266)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEEC
Confidence            9999988777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=7e-07  Score=69.76  Aligned_cols=185  Identities=15%  Similarity=0.065  Sum_probs=122.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN  118 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~  118 (247)
                      +..|..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..+|.. ++....+......+..+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4456667788899999987 666665554444456667777776 5557778899999988 776656654445556666


Q ss_pred             EcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCC
Q psy4393         119 FNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (247)
Q Consensus       119 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (247)
                      ..+++.+++..   +.+..+| .+++...........+.++..++++.+. .++.++.+..+|. +++....+.... ..
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~-~~  256 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGK-RI  256 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSS-CC
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCC-Cc
Confidence            77777766544   8899999 7777666666555667778888887644 4566778888875 344333332221 22


Q ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         199 VSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       199 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +..+.+.+++ .|..++.+|.|..+|. +++.+-.+.
T Consensus       257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence            2334555555 5777888889999996 455444444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.93  E-value=1.4e-06  Score=68.20  Aligned_cols=199  Identities=12%  Similarity=0.102  Sum_probs=117.2

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEe---c-ccCCeEEEEECC-CCCEEEEEcC-------------
Q psy4393          29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS---G-HKLGISDVAWSS-DSRLLVSGSD-------------   89 (247)
Q Consensus        29 ~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~l~~~~~-------------   89 (247)
                      .+..+++++ +|+++ .+...+.+..++..++.......   + .......+++.+ +|+..++...             
T Consensus        81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            467899997 66544 44445558888866543322211   1 112467899999 9987776533             


Q ss_pred             ----CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCe--EEEeecCCCCCeEEEEEC
Q psy4393          90 ----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        90 ----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~  162 (247)
                          ++.+..+|..+++....... ......++++|+++.++.+ ...+.|.+|++....  ....+....+ ...++++
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d  237 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN  237 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred             ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence                36788889876654322221 1223468899999866554 556889999987421  1111111223 6788999


Q ss_pred             CCCCEEEEecC----------CCeEEEEeCCCceeeeeeccCC---CCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         163 RDGSLIVSSSY----------DGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       163 ~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ++|.++++...          .+.|..+|.. ++.+..+....   ...+..+++ .++++.++....+.|.+++.....
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence            99987666544          4678888874 55555443332   123455555 355555555567899999987666


Q ss_pred             eEE
Q psy4393         230 PAI  232 (247)
Q Consensus       230 ~~~  232 (247)
                      +..
T Consensus       316 ~~~  318 (322)
T 2fp8_A          316 NSF  318 (322)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.92  E-value=5.1e-06  Score=64.56  Aligned_cols=201  Identities=11%  Similarity=0.098  Sum_probs=120.8

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC--CeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD--KTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~   96 (247)
                      ....+... .....++|+++|+++++-..++.|..|+.... ....+. .......+++.++|+++++....  ..|..+
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence            33444322 56778999999997776667889999987643 333332 23457889999999976655432  246667


Q ss_pred             ECCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE-EEee-------c--CCCCCeEEEEECCCC
Q psy4393          97 ELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTL-------P--AHSDPVSAVHFNRDG  165 (247)
Q Consensus        97 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~-------~--~~~~~i~~~~~~~~~  165 (247)
                      +..+++....... .......++..+++..+++...++.|+.+|...+.. +...       .  ..-.....+  +|++
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            7777764332221 112233444455555555554678899999876531 2110       0  111123444  7788


Q ss_pred             CEEEEe-cCCCeEEEEeCCC-cee--eeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         166 SLIVSS-SYDGLCRIWDTAS-GQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       166 ~~l~~~-~~dg~i~v~d~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..|+++ ...+.|..||+.. ++.  ...+...  .....++++++|++.++....++|.++|..
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            766544 5567899999864 321  1111111  122457899999877666677899999975

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.89  E-value=3.3e-07  Score=80.10  Aligned_cols=192  Identities=15%  Similarity=0.170  Sum_probs=111.0

Q ss_pred             CeEEEEEC-CCCCEEEEEe-CCC----eEEEEecCCC-eEEE-EEecccCCeEEEEECCCCCEEEEEcCC-----CeEEE
Q psy4393          29 AVSSVKFS-PNGEWLASSS-ADK----LIKIWGAYDG-KFEK-TISGHKLGISDVAWSSDSRLLVSGSDD-----KTLKI   95 (247)
Q Consensus        29 ~v~~~~~s-~~~~~l~~~~-~dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v   95 (247)
                      .+...+|| |||++||.+. .+|    .|+++|+.++ +... .+..   ....+.|+|||+.|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 9999887543 233    4999999887 5221 1111   13467899999888776654     36888


Q ss_pred             EECCCceE--EEEEec-CCccEEEEEEcCCCCEEEEeeC---CCCEEEEECCCCe-EE--Eee-cCCCCCeEEEEECCCC
Q psy4393          96 WELSSGKC--LKTLKG-HSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGK-CL--KTL-PAHSDPVSAVHFNRDG  165 (247)
Q Consensus        96 ~d~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~-~~--~~~-~~~~~~i~~~~~~~~~  165 (247)
                      +++.++..  ...+.. .......+.|+|+++.|+....   ...|+++|+.++. ..  ..+ .........+.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88876532  222222 2234567889999998877653   3358888988652 12  333 2334455555554444


Q ss_pred             CEEEEecCC----CeEEEEeCCCceeeee-eccC-CCCCeEEEEECCCCCEE-EEEEcCCe--EEEEEC
Q psy4393         166 SLIVSSSYD----GLCRIWDTASGQCLKT-LIDD-DNPPVSFVKFSPNGKYI-LAATLDNT--LKLWDS  225 (247)
Q Consensus       166 ~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~-~~~~v~~~~~s~~~~~l-~~~~~dg~--i~vwd~  225 (247)
                      .+++....+    ..|..+|+.++..... +... ....+..+.+.  +..| ++...+|.  |.++|.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            444444443    3677778765221222 2222 22234445554  4444 45566774  556664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.87  E-value=5.6e-07  Score=77.62  Aligned_cols=189  Identities=12%  Similarity=0.142  Sum_probs=125.5

Q ss_pred             CCeEEEEecCCCeEEEEEeccc---C----------------------------CeEEEEECCCCCEEEEEcCCC-----
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHK---L----------------------------GISDVAWSSDSRLLVSGSDDK-----   91 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~---~----------------------------~v~~~~~~~~~~~l~~~~~d~-----   91 (247)
                      +|.|..+|..+++....+....   .                            ....+++.|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5889999999999888775210   0                            011357778788888887765     


Q ss_pred             --------------eEEEEECCCceEEEEEecC--C-------ccEEEEEEcCCCC---EEEEeeCCCCEEEEECCCCeE
Q psy4393          92 --------------TLKIWELSSGKCLKTLKGH--S-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC  145 (247)
Q Consensus        92 --------------~i~v~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~  145 (247)
                                    .|..+|.++++.+..++..  .       .......+..+++   .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          3889999999987776542  1       2222222333554   688899999999999999987


Q ss_pred             EEeecCCCC------------C------------------------eEEEEECCCCCEEEEe------------------
Q psy4393         146 LKTLPAHSD------------P------------------------VSAVHFNRDGSLIVSS------------------  171 (247)
Q Consensus       146 ~~~~~~~~~------------~------------------------i~~~~~~~~~~~l~~~------------------  171 (247)
                      +...+....            +                        ...++++|+..++++.                  
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            743321110            0                        0125677776665541                  


Q ss_pred             ------------------cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         172 ------------------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       172 ------------------~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                                        ..+|.+..||+.+++.+-......  +.....+...+.+++.++.||.++.||.++++.+-.
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~  494 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence                              124789999999998654332221  122223344677899999999999999999998877


Q ss_pred             EccCC
Q psy4393         234 CSTPL  238 (247)
Q Consensus       234 ~~~~~  238 (247)
                      +..+.
T Consensus       495 ~~~~~  499 (668)
T 1kv9_A          495 FEAQS  499 (668)
T ss_dssp             EECSS
T ss_pred             ecCCC
Confidence            76654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=1.6e-07  Score=74.91  Aligned_cols=91  Identities=9%  Similarity=-0.099  Sum_probs=71.8

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEEECCCceEEEEEecC-------Cc
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSGKCLKTLKGH-------SN  112 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~-------~~  112 (247)
                      .|.++|..+++.+..+.....+  .+.++||++.++++.          .++.|.+||..+++.+..+...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999998888765555  699999999888875          3678999999999988887533       01


Q ss_pred             cEEEEEEcCCCCEEEEeeC--CCCEEE--EECCC
Q psy4393         113 YVFCCNFNPQSNLIVSGSF--DESVRI--WDVRT  142 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~--d~~i~v--~d~~~  142 (247)
                      ....+.++|+|++++.+..  +..+.+  +|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            2346789999999988864  356888  88865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.83  E-value=8e-07  Score=66.83  Aligned_cols=160  Identities=13%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             eEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEe
Q psy4393          72 ISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKT  148 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~  148 (247)
                      ...+.|+ ++.++.+++.+|  .|+.+|+++++.+..+..... .......+.+..++.. -.++.+.+||..+.+.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4678888 666667777665  899999999998887764332 2222223334455544 4578899999999999888


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +......   ..+++++..|+.+..++.|.++|..+.+.+..+.... .   ..++.+.|. +|+..+..-.++.|.+.|
T Consensus       123 i~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          123 FNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            8754332   2333567777776667889999999988776654321 1   234557776 676444444688999999


Q ss_pred             CCCcceEEEEccC
Q psy4393         225 SKVVTPAIICSTP  237 (247)
Q Consensus       225 ~~~~~~~~~~~~~  237 (247)
                      .++++.+..+..+
T Consensus       199 p~tG~V~~~Id~~  211 (262)
T 3nol_A          199 PETGKVTGIIDLN  211 (262)
T ss_dssp             TTTCBEEEEEECT
T ss_pred             CCCCcEEEEEECC
Confidence            9999988777653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.82  E-value=1.5e-05  Score=63.16  Aligned_cols=201  Identities=9%  Similarity=-0.041  Sum_probs=120.3

Q ss_pred             CCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCC-EEEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ..+..++|++.+..|+.+ ...+.|..++.........+.........+++.+.+. .+++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            346788998766655544 4567888888765544443433333456788887544 44565667899999987544333


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEe-eCC-CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSG-SFD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (247)
                      .+.........++++|.+..++.. ... +.|..+++............-.....++++|++..|+.+ ...+.|..+|+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            333333456788999866555544 344 678888876433222222223456889999876655554 45678999998


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      .... ...+.......-..+++. .+...++-...++|..+|..+++.
T Consensus       233 dG~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          233 DGSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             TSCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCc-eEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            7533 222322222233567773 344444444567899998655443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.76  E-value=2e-05  Score=63.36  Aligned_cols=205  Identities=9%  Similarity=-0.038  Sum_probs=122.6

Q ss_pred             CCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      .....++|++.+..|+ +-...+.|..++.........+.........+++.+.+.. +++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4567889987655554 4445678888887665444434333334567888875544 4555667788888876544333


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEee-CC-CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGS-FD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (247)
                      .+.........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+ +..+.|..+|+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            3333334567889998766655544 33 678888876433222222333456889999866655544 55678999998


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      .... ...+.......-..+++. .+..+++-...++|..+|..++....++
T Consensus       276 dG~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          276 DGSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             TSCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCe-eEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            6533 222332222334567773 3444445556789999996555443333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=2.9e-06  Score=63.86  Aligned_cols=158  Identities=9%  Similarity=-0.019  Sum_probs=109.5

Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec
Q psy4393          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (247)
                      ...+.|+ ++.++.+.+.+|.|+.+|+++++.+..+ -.... -..+.... +.+....-.++.+.+||..+.+.+..+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            4677886 4566778888899999999999877766 22221 12344443 2444445567889999999999988887


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..... ..++  +++..|+.+..++.|.++|..+.+.+..+.... .   ..++.+.|. +|+..+..-.++.|.+.|.+
T Consensus       134 ~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          134 YSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             CSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred             CCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence            54332 2333  567878777778899999999988776654322 1   234567776 67544444467899999999


Q ss_pred             CcceEEEEcc
Q psy4393         227 VVTPAIICST  236 (247)
Q Consensus       227 ~~~~~~~~~~  236 (247)
                      +++.+..+..
T Consensus       210 TG~V~~~Idl  219 (268)
T 3nok_A          210 TGTVVGVIDA  219 (268)
T ss_dssp             TCBEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9987776654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.74  E-value=3e-06  Score=71.73  Aligned_cols=196  Identities=14%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             CEEEEEeC------CCeEEEEecCCCeEEEEEecccCC-------------------------------------e-EEE
Q psy4393          40 EWLASSSA------DKLIKIWGAYDGKFEKTISGHKLG-------------------------------------I-SDV   75 (247)
Q Consensus        40 ~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~   75 (247)
                      ..++.++.      ++.|..+|..+++....+......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555544      789999999999988776532110                                     0 124


Q ss_pred             EECCCCCEEEEEcCC----------------CeEEEEECCCceEEEEEecCC----------ccEEEEEEcCCCC---EE
Q psy4393          76 AWSSDSRLLVSGSDD----------------KTLKIWELSSGKCLKTLKGHS----------NYVFCCNFNPQSN---LI  126 (247)
Q Consensus        76 ~~~~~~~~l~~~~~d----------------~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l  126 (247)
                      ++.++...++.+..+                +.|..+|.++++.+..++...          .++. ....++++   .+
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v  319 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLL  319 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEE
Confidence            555665666665532                358899999998877665321          2221 22224563   56


Q ss_pred             EEeeCCCCEEEEECCCCeEEEeecCCC-------------CCe--------------------------EEEEECCCCCE
Q psy4393         127 VSGSFDESVRIWDVRTGKCLKTLPAHS-------------DPV--------------------------SAVHFNRDGSL  167 (247)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~  167 (247)
                      +.++.+|.++++|..+++.+.......             .++                          ..++++|+..+
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            778889999999999998876654221             111                          23567787776


Q ss_pred             EEEec-------------------------------------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCE
Q psy4393         168 IVSSS-------------------------------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (247)
Q Consensus       168 l~~~~-------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  210 (247)
                      +++..                                     .+|.+..||+.+++.+-+.....  ++....+...+..
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~  477 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTE
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCE
Confidence            66543                                     34789999999887654442221  1111112234567


Q ss_pred             EEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         211 ILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ++.++.||.|+.||.++++.+-.+..+.
T Consensus       478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence            8889999999999999998887766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.73  E-value=5.7e-06  Score=61.63  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=107.7

Q ss_pred             eEEEEECCCCCEEEEEcCC--CeEEEEECCCceEEEEEecCCccE-EEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe
Q psy4393          72 ISDVAWSSDSRLLVSGSDD--KTLKIWELSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (247)
                      ...+.|++ +.++.+.+..  ..|+.+|+++++.+..+....... ..+.... +.+....-.++.+.+||..+.+.+..
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            56788876 5555666664  489999999999887776433221 2233332 33444445678899999999999988


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-C---CCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       149 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      +...... ..++  +++..|+++..++.|.++|..+.+.+.++.... .   ..++.+.+. +|+..+..-.++.|.+.|
T Consensus       101 i~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vID  176 (243)
T 3mbr_X          101 FRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARID  176 (243)
T ss_dssp             EECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred             EeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence            8764433 2343  466666666668899999999988776654321 1   234556665 566444444688999999


Q ss_pred             CCCcceEEEEcc
Q psy4393         225 SKVVTPAIICST  236 (247)
Q Consensus       225 ~~~~~~~~~~~~  236 (247)
                      .++++.+..+..
T Consensus       177 p~tG~V~~~idl  188 (243)
T 3mbr_X          177 PASGKVVAWIDL  188 (243)
T ss_dssp             TTTCBEEEEEEC
T ss_pred             CCCCCEEEEEEC
Confidence            999988777664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.70  E-value=2.9e-05  Score=60.86  Aligned_cols=191  Identities=11%  Similarity=0.242  Sum_probs=120.9

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCC----CC---EEEEEc-C--CCeEEEEECC--CceEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----SR---LLVSGS-D--DKTLKIWELS--SGKCLKT  106 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~v~d~~--~~~~~~~  106 (247)
                      ..++++..+.+-+.+||+ +++.+..+..  ..++.+...|+    |+   ++++.. .  +..|.+|++.  ++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345666677889999999 7777777753  45666666552    22   223333 3  5789999763  333 433


Q ss_pred             Eec-------CCccEEEEEE--cCC-CC-EEEEeeCCCCEEEEECC-------CCeEEEeecCCCCCeEEEEECCCCCEE
Q psy4393         107 LKG-------HSNYVFCCNF--NPQ-SN-LIVSGSFDESVRIWDVR-------TGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (247)
Q Consensus       107 ~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l  168 (247)
                      +..       ....+..+++  +|. +. +++....+|.+..|++.       +.+.++.+... +.+..+..++....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence            321       1134455666  664 43 56777788999998883       23456667654 467788888888889


Q ss_pred             EEecCCCeEEEEeCC-----Cceeeeeecc-CCCCCeEEEEE--CCCCC-EEEEEE-cCCeEEEEECC-CcceEEEE
Q psy4393         169 VSSSYDGLCRIWDTA-----SGQCLKTLID-DDNPPVSFVKF--SPNGK-YILAAT-LDNTLKLWDSK-VVTPAIIC  234 (247)
Q Consensus       169 ~~~~~dg~i~v~d~~-----~~~~~~~~~~-~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~~-~~~~~~~~  234 (247)
                      +.+-++.-|..|+.+     +.+.+..+-. .....+..|++  .++++ +|++++ .++++.|||.. ....+..+
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            999988778888855     2333433211 12235677777  56666 777777 46799999997 44444444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.66  E-value=1.8e-06  Score=74.43  Aligned_cols=192  Identities=14%  Similarity=0.096  Sum_probs=125.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccCC----------e-EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----------I-SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      +..|+.++.++.|.-+|..+++.+.........          + ..++.  .+..++.++.++.+..+|.++++.+...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            556777778899999999999988877532210          0 11122  3567888888999999999999987766


Q ss_pred             ecCCcc-EEEEEEcC--CCCEEEEeeC------CCCEEEEECCCCeEEEeecCCC-C-----------------------
Q psy4393         108 KGHSNY-VFCCNFNP--QSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHS-D-----------------------  154 (247)
Q Consensus       108 ~~~~~~-v~~~~~~~--~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~-~-----------------------  154 (247)
                      ...... ...+...|  .+..++.+..      ++.|+.+|.++|+.+..+.... .                       
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            542100 00000111  1335555543      5889999999999887664210 0                       


Q ss_pred             -------CeEEEEECCCCCEEEEecCCC-------------------eEEEEeCCCceeeeeeccC-C-------CCCeE
Q psy4393         155 -------PVSAVHFNRDGSLIVSSSYDG-------------------LCRIWDTASGQCLKTLIDD-D-------NPPVS  200 (247)
Q Consensus       155 -------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~~-~-------~~~v~  200 (247)
                             ....++++|+...++.++.++                   .|..+|..+++.+=.+... +       ..+..
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                   112467888888888887665                   3999999999876444322 1       12333


Q ss_pred             EEEECCCCC---EEEEEEcCCeEEEEECCCcceEE
Q psy4393         201 FVKFSPNGK---YILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       201 ~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      ...+..+|+   .++.++.+|.+.++|..+++++.
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence            333334665   68889999999999999988763

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.66  E-value=6.8e-05  Score=58.55  Aligned_cols=204  Identities=9%  Similarity=-0.005  Sum_probs=120.9

Q ss_pred             CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCC
Q psy4393          27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSS  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~  100 (247)
                      .....+++|++.+..|+.+ ..++.|..++...    ......+.........+++.+.+.. +++-...+.|.+++...
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3567799999876655544 4568898888764    2222223222234578888875544 45556778999999875


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCC--CCEEEEECCCCeEEEee-cCCCCCeEEEEECCCCCEEEEe-cCCCe
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--ESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSS-SYDGL  176 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~  176 (247)
                      ......+.........++++|.+..++.....  +.|..+++... ....+ ...-.....+++++++..|+.+ ...+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            44333333333456788999866655554432  67888887533 22322 2223456789999877666554 45678


Q ss_pred             EEEEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         177 CRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      |..+|+.... ...+...  ....-..+++.. +..+++-...++|..+|..+++.+.+
T Consensus       188 I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          188 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEE
Confidence            9999987532 2233221  112235567643 44444445668999999766543333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.62  E-value=1.1e-05  Score=68.48  Aligned_cols=189  Identities=13%  Similarity=0.117  Sum_probs=120.3

Q ss_pred             CCCeEEEEecCCCeEEEEEecccCC-------------------------------------e-EEEEECCCCCEEEEEc
Q psy4393          47 ADKLIKIWGAYDGKFEKTISGHKLG-------------------------------------I-SDVAWSSDSRLLVSGS   88 (247)
Q Consensus        47 ~dg~v~iw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~   88 (247)
                      .+|.|+-+|..+++.+..+......                                     + ..+++.++..+++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999988776532211                                     0 0234556667777766


Q ss_pred             CC----------------CeEEEEECCCceEEEEEecCC----------ccEEEEEEc-CCC---CEEEEeeCCCCEEEE
Q psy4393          89 DD----------------KTLKIWELSSGKCLKTLKGHS----------NYVFCCNFN-PQS---NLIVSGSFDESVRIW  138 (247)
Q Consensus        89 ~d----------------~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~d~~i~v~  138 (247)
                      .+                +.|..+|.++++....++...          .++. +... .++   ..++.++.+|.++++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            55                378899999998876665422          1122 2222 456   467778899999999


Q ss_pred             ECCCCeEEEeecCCC-------------CCe--------------------------EEEEECCCCCEEEEe--------
Q psy4393         139 DVRTGKCLKTLPAHS-------------DPV--------------------------SAVHFNRDGSLIVSS--------  171 (247)
Q Consensus       139 d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~--------  171 (247)
                      |.++++.+.......             .++                          ..++++|+..++++.        
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  418 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence            999998876543211             011                          235666665555442        


Q ss_pred             -------------------------c------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeE
Q psy4393         172 -------------------------S------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  220 (247)
Q Consensus       172 -------------------------~------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  220 (247)
                                               +      ..|.+..||+.+++.+=......  +...-.+...+.+++.++.||.+
T Consensus       419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l  496 (599)
T 1w6s_A          419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYL  496 (599)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEE
T ss_pred             ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeE
Confidence                                     1      34788899998887643332111  11100122346678889999999


Q ss_pred             EEEECCCcceEEEEccCC
Q psy4393         221 KLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       221 ~vwd~~~~~~~~~~~~~~  238 (247)
                      +.||.++++.+=.++.+.
T Consensus       497 ~A~D~~tG~~lW~~~l~~  514 (599)
T 1w6s_A          497 KARDSDTGDLLWKFKIPS  514 (599)
T ss_dssp             EEEETTTCCEEEEEECSS
T ss_pred             EEEECCCCCEEEEeeCCC
Confidence            999999998887776554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.60  E-value=0.00013  Score=58.95  Aligned_cols=207  Identities=9%  Similarity=0.003  Sum_probs=123.4

Q ss_pred             CCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCC-CCEEEEEcCCCeEEEEECCC
Q psy4393          27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~  100 (247)
                      ...+..++|++.+..|+-+ ...+.|+.++....    .....+.........+++.+. ++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3567789999866655544 45677888877542    223333333445778888874 44555666678999999876


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC  177 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  177 (247)
                      ......+.........++++|.+..|+....  .+.|...++............-.....+++++++..|+.+ .....|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            5444344434445678899996666655442  3678888886443222223333456889999877766655 456789


Q ss_pred             EEEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         178 RIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ..+|+..... ..+...  ....-..+++.. +..+.+-...++|..+|..+++.+.++.
T Consensus       271 ~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          271 SSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTSCCC-EEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEeCCCCcc-EEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            9999865432 222221  112234566532 3344444456789999966654443433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.59  E-value=0.00012  Score=58.03  Aligned_cols=201  Identities=7%  Similarity=-0.060  Sum_probs=122.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..+|.+..+++ +|+.+. ...|+..+.........+. .......++|++.++.|+ +-...+.|..+++........+
T Consensus        35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            34566666643 444333 3457777776555444443 334578899997655554 4456788999998765533333


Q ss_pred             ecCCccEEEEEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCC-CeEEEEeCCC
Q psy4393         108 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYD-GLCRIWDTAS  184 (247)
Q Consensus       108 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-g~i~v~d~~~  184 (247)
                      .........+++++.+ .+.++-...+.|.+.++........+.........++++|.+..|+.+ ... +.|..+++..
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            3223334567888754 444555566789999987543322233333456889999866655544 344 7888888765


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII  233 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~  233 (247)
                      .. ...+.......-..++++|++..|+.+.. .++|..+|.+......+
T Consensus       192 ~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~  240 (349)
T 3v64_C          192 SG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  240 (349)
T ss_dssp             CS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence            33 22332222233578999998887777764 57899999876544333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.58  E-value=0.00011  Score=57.31  Aligned_cols=189  Identities=7%  Similarity=-0.022  Sum_probs=115.2

Q ss_pred             EEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC----ceEEEEEecCCccEEE
Q psy4393          42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS----GKCLKTLKGHSNYVFC  116 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~  116 (247)
                      |+.+. ...|+..+.........+. .......++|++.++.| .+-..++.|..+++..    ......+.........
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            44433 3468888887665554443 34457889999866555 4555578999999875    2222222222233467


Q ss_pred             EEEcCCC-CEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC--CeEEEEeCCCceeeeeecc
Q psy4393         117 CNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTASGQCLKTLID  193 (247)
Q Consensus       117 ~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~  193 (247)
                      +++++.+ ++.++-...+.|.++|+........+.........++++|.+..|+.+...  +.|..+++.... ...+..
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence            7888644 445555667889999987543322233333456889999876666555432  688888876432 333322


Q ss_pred             CCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393         194 DDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII  233 (247)
Q Consensus       194 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~  233 (247)
                      .....-..+++++++..|+.+.. .++|..+|.+......+
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence            22234578999998888877764 57999999876544333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.58  E-value=1.9e-05  Score=66.99  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             CeEEEEECCCceEEEEEec--CC--------ccEEEEEEc-CCCC---EEEEeeCCCCEEEEECCCCeEEEeecCCC---
Q psy4393          91 KTLKIWELSSGKCLKTLKG--HS--------NYVFCCNFN-PQSN---LIVSGSFDESVRIWDVRTGKCLKTLPAHS---  153 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---  153 (247)
                      +.|..+|.++++.+..++.  +.        .++. .... .+|+   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5799999999998776653  21        1222 1221 4563   67888999999999999998876544321   


Q ss_pred             ----------CC--------------------------------eEEEEECCCCCEEEEec-------------------
Q psy4393         154 ----------DP--------------------------------VSAVHFNRDGSLIVSSS-------------------  172 (247)
Q Consensus       154 ----------~~--------------------------------i~~~~~~~~~~~l~~~~-------------------  172 (247)
                                .+                                ...++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                01345666555554432                   


Q ss_pred             --------------CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         173 --------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       173 --------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                                    .+|.+..||+.+++.+=......  +...-.....+.+++.++.||.++.||.++++.+-.+..+.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~  527 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence                          25789999999987653332211  11111111236678889999999999999999887777665


Q ss_pred             c
Q psy4393         239 N  239 (247)
Q Consensus       239 ~  239 (247)
                      .
T Consensus       528 g  528 (582)
T 1flg_A          528 G  528 (582)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.57  E-value=0.00013  Score=57.05  Aligned_cols=205  Identities=6%  Similarity=-0.023  Sum_probs=120.9

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeE-EEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEEE
Q psy4393          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ...+++|++.+..|+ +-...+.|..++...... ...+.........+++.+.+ ..+++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            456888988655554 444567888888765432 12222222345678888744 445555667899999987543322


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (247)
                      .+.........++++|.+..|+...  ..+.|..+++............-.....++++|++..|+.+ +..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            2323344567889998766665554  25678888876432222222223346789999976655554 55678999998


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      .... ...+.......-..+++.. +..+.+-...+.|..+|..+++...++.
T Consensus       196 dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          196 DGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            6433 2333322222335566653 3344444456899999987665444433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=4e-05  Score=62.53  Aligned_cols=152  Identities=11%  Similarity=0.093  Sum_probs=96.1

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC-CC----eEEEEECCCce
Q psy4393          29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DK----TLKIWELSSGK  102 (247)
Q Consensus        29 ~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v~d~~~~~  102 (247)
                      ....++++| ++..|+.+...+.|+.+|...+...... ........++|+++++.|+.+.. ++    .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            456889998 4566666655578888988766544333 34455788999999996655543 22    3433443 222


Q ss_pred             EE--EEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecC-CCCCeEEEEECCCCCEEE-EecCCCeE
Q psy4393         103 CL--KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIV-SSSYDGLC  177 (247)
Q Consensus       103 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~i  177 (247)
                      ..  ..+.. ......++++| ++.++++-..++.|..++...+........ .......++++|++++|+ +-...+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11  22221 22245678899 777777766778899999987654222222 123457899999999554 44566788


Q ss_pred             EEEeCC
Q psy4393         178 RIWDTA  183 (247)
Q Consensus       178 ~v~d~~  183 (247)
                      ..++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            887754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.54  E-value=0.00022  Score=62.81  Aligned_cols=197  Identities=11%  Similarity=0.118  Sum_probs=127.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec------ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ..|.++..+++|.+- .|+.++-|..|+............      ....|.++...++|+.. .|+.++-+..|+..++
T Consensus       310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC
T ss_pred             CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC
Confidence            568889898888754 456667788887655433221110      13458899888888755 4666666888998776


Q ss_pred             eEEEEEec--------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec----CCCCCeEEEEECCCCCEEE
Q psy4393         102 KCLKTLKG--------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP----AHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       102 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~  169 (247)
                      ........        ....|.++..++++.++..|+.++.|..+|..+++......    .....|.++...++|.+.+
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            54332211        13568888888888845566776779999998776433221    1245789999998888666


Q ss_pred             EecCCCeEEEEeCCCceeeeeecc-----CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLID-----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      ... + -+..||..+++.......     .....|.++..+++|++.+.+ . +-|..||.+....
T Consensus       468 gt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          468 GTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI  529 (795)
T ss_dssp             EES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE
T ss_pred             Eec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE
Confidence            543 4 478899887654332211     112468889999998866554 4 5588888765543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.54  E-value=0.00021  Score=62.82  Aligned_cols=192  Identities=11%  Similarity=0.080  Sum_probs=126.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec--------ccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ..|.++...++|.+- .|+.++-|..|+..++........        ....|.++...++++.|..|+.++-+..+|..
T Consensus       357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             SSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            458899998888754 466776788898776654332211        13458888888888845566666778899988


Q ss_pred             CceEEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec------CCCCCeEEEEECCCCCEEE
Q psy4393         100 SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       100 ~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~  169 (247)
                      +++......    .....|.++...+++.+.+...  +.+..||..+++......      .....|.++..+++|.+.+
T Consensus       436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence            776433221    1234688888888888666543  458899988765432221      1235689999999998766


Q ss_pred             EecCCCeEEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .+.  +-+..||..+++.  .+..      .....|.++..+++|.+.++ +.+ -|..||.+..
T Consensus       514 gt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          514 GGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDK  572 (795)
T ss_dssp             EES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTT
T ss_pred             EeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCC
Confidence            554  4477888776654  2211      11235788888999885554 434 5778887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.51  E-value=1.6e-05  Score=68.44  Aligned_cols=113  Identities=13%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEecCCCeEEE--EEec-ccCCeEEEEECCCCCEEEEEcC-CCeEEE
Q psy4393          32 SVKFSP-NGEWLASSSADK-----------LIKIWGAYDGKFEK--TISG-HKLGISDVAWSSDSRLLVSGSD-DKTLKI   95 (247)
Q Consensus        32 ~~~~s~-~~~~l~~~~~dg-----------~v~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~v   95 (247)
                      ..++.+ +++.++.|+.+.           .+.+||..+++...  .+.. +.......++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456667 888888776542           57889987665322  2221 2222445677889999998884 458999


Q ss_pred             EECCCceEEEEEecCCcc-EEEEEEcCCCCEEEEee-CC-----CCEEEEECCCCe
Q psy4393          96 WELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS-FD-----ESVRIWDVRTGK  144 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~~  144 (247)
                      ||..+.+....-.....+ -..+...+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            999876543221111111 12345567889999988 34     468899987654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.51  E-value=0.00017  Score=57.97  Aligned_cols=199  Identities=7%  Similarity=-0.050  Sum_probs=120.1

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEec
Q psy4393          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      .+.+..+. .+|+.+. ...|+.++.........+. .......++|.+.+..| .+-...+.|..+++........+..
T Consensus        80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             eECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            34444443 3444333 4567788876655544443 33457889999765555 4555678899999876654333332


Q ss_pred             CCccEEEEEEcCCCC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CC-CeEEEEeCCCce
Q psy4393         110 HSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YD-GLCRIWDTASGQ  186 (247)
Q Consensus       110 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~v~d~~~~~  186 (247)
                      .......+++++.+. +.++-...+.|.+.++........+.........++++|.+..|+.+. .. +.|..+++....
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            223345677887544 445555567788888764432222333334568899998766665544 33 678888876543


Q ss_pred             eeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEE
Q psy4393         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAII  233 (247)
Q Consensus       187 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~  233 (247)
                       ...+.......-..++++|++..|+.+.. .++|..+|.+......+
T Consensus       237 -~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          237 -RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             -CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred             -cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence             22232222233478999988877777664 57899999876544333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.50  E-value=0.00019  Score=55.66  Aligned_cols=187  Identities=12%  Similarity=0.060  Sum_probs=108.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-C-eEEEEecCCCeEEEEEecc-cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE-
Q psy4393          28 KAVSSVKFSPNGEWLASSSAD-K-LIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-  103 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~d-g-~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-  103 (247)
                      .....++++++|+++++.... + .|..++..+++........ ......++..+++..+++...++.|..+|..+++. 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            457889999999966554332 2 4666676666654333221 12234455555555555555688999999875421 


Q ss_pred             EEEEe---------cCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCC-CeE--EEeecCCCCCeEEEEECCCCCEEEE
Q psy4393         104 LKTLK---------GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRT-GKC--LKTLPAHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       104 ~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~  170 (247)
                      +....         ........+  ++++..++.+ ...+.|..||+.. ++.  ...+.. ......++++++|.++++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEE
Confidence            11110         011123344  7777655544 5567899999864 321  111111 122345789999988777


Q ss_pred             ecCCCeEEEEeCCCceeeee-eccCCCCCeEEEEEC---CCCCEEEEEEcCC
Q psy4393         171 SSYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFS---PNGKYILAATLDN  218 (247)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~s---~~~~~l~~~~~dg  218 (247)
                      ....+.|.++|.. ++.... ..........+++|.   |+++.|+.++..+
T Consensus       229 ~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          229 THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            6677889999975 443221 111222446889998   8988887776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.47  E-value=0.00023  Score=55.41  Aligned_cols=206  Identities=9%  Similarity=0.073  Sum_probs=125.2

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEecc-------cCCeEEEEE---CCCCCEEEEEc-
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAW---SSDSRLLVSGS-   88 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~-   88 (247)
                      +.+....----+++|++....+..++ ..+.|..|+...+.........       ...+..+.|   .|+++++++.. 
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            34444444445788988666555555 7899999998755443332111       113578999   68877766543 


Q ss_pred             ------------CCCeEEEEECC---CceEEEEEec-------------CCccEEEEEEcCCCCEEEEeeCC-CCEEEEE
Q psy4393          89 ------------DDKTLKIWELS---SGKCLKTLKG-------------HSNYVFCCNFNPQSNLIVSGSFD-ESVRIWD  139 (247)
Q Consensus        89 ------------~d~~i~v~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d  139 (247)
                                  .+..+..||+.   +++.+....-             .......+...++|+..++++.. +.|..++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        25778899998   7765544331             11246789999999999998888 8777777


Q ss_pred             CCCCeEEEee--cC----CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee--eeeec-cC--CCCCeEE-EEECCC
Q psy4393         140 VRTGKCLKTL--PA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLI-DD--DNPPVSF-VKFSPN  207 (247)
Q Consensus       140 ~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~-~~--~~~~v~~-~~~s~~  207 (247)
                      .... .+..+  ..    .....+.|+++|++..|++....|.+..+|+.....  +.... ..  ....... +..--+
T Consensus       166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred             CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence            6533 22221  11    111256899999999888887799999999874322  11100 10  1112233 233346


Q ss_pred             CCEE-EEEEcCCeEEEEECCC
Q psy4393         208 GKYI-LAATLDNTLKLWDSKV  227 (247)
Q Consensus       208 ~~~l-~~~~~dg~i~vwd~~~  227 (247)
                      |+.| ++....+.+.+.+.+.
T Consensus       245 G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             TEEEEEEEETTEEEEEECSST
T ss_pred             CEEEEEEcCCCCEEEEECCCC
Confidence            7774 4444566666665443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.47  E-value=1.9e-05  Score=66.83  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             EEECCCCCEEEEEeCC----------------CeEEEEecCCCeEEEEEeccc----------CCeEEEEECCCCC---E
Q psy4393          33 VKFSPNGEWLASSSAD----------------KLIKIWGAYDGKFEKTISGHK----------LGISDVAWSSDSR---L   83 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~d----------------g~v~iw~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~   83 (247)
                      +++.+....++.+..+                +.|..+|..+++....+....          .++. ....++|+   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            4566666666555432                358889999998887765321          1111 12223564   5


Q ss_pred             EEEEcCCCeEEEEECCCceEEEEEecCC-------------ccE--------------------------EEEEEcCCCC
Q psy4393          84 LVSGSDDKTLKIWELSSGKCLKTLKGHS-------------NYV--------------------------FCCNFNPQSN  124 (247)
Q Consensus        84 l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~~  124 (247)
                      ++.++.+|.+.++|..+++.+.......             .++                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            6778889999999999998776554221             011                          1246677777


Q ss_pred             EEEEee-------------------------------------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCE
Q psy4393         125 LIVSGS-------------------------------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus       125 ~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      +++...                                     .++.|..||+.+++.+....... ++....+...+..
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~  477 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCE
Confidence            776653                                     24789999999998877664322 1211112223556


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEE
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  213 (247)
                      +++++.||.+..+|.++++.+-.+.......-.-+.+..+|+.++.
T Consensus       478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            7778999999999999999876664432211111334566664443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.47  E-value=3.7e-05  Score=65.28  Aligned_cols=194  Identities=10%  Similarity=0.017  Sum_probs=123.9

Q ss_pred             CCEEEEEeC-CCeEEEEec-CCCeEEEEEecccCC-----------eEEEEECCCCCE----EEEEcCCCeEEEEECCCc
Q psy4393          39 GEWLASSSA-DKLIKIWGA-YDGKFEKTISGHKLG-----------ISDVAWSSDSRL----LVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        39 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~i~v~d~~~~  101 (247)
                      +..|+.++. ++.|.-+|. .+++.+.........           ...++..|.+..    ++.++.++.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456666777 888999999 899988776532210           123445333334    778888999999999999


Q ss_pred             eEEEEEecCCc----cEEE-EEEcCCCCEEEEee------CCCCEEEEECCCCeEEEeecCCCCC---------------
Q psy4393         102 KCLKTLKGHSN----YVFC-CNFNPQSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHSDP---------------  155 (247)
Q Consensus       102 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~---------------  155 (247)
                      +.+........    .+.. ..+. ++ .++.++      .++.|+.+|.++|+.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            87766543220    1110 0111 33 455554      3789999999999987665432110               


Q ss_pred             -----------------------eEEEEECCCCCEEEEecCC----------------CeEEEEeCCCceeeeeeccCC-
Q psy4393         156 -----------------------VSAVHFNRDGSLIVSSSYD----------------GLCRIWDTASGQCLKTLIDDD-  195 (247)
Q Consensus       156 -----------------------i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~~~-  195 (247)
                                             ...+.+++...+++.+..+                +.+..+|.++++.+=.+...+ 
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                   0134566777777777655                378999999998764443321 


Q ss_pred             --------CCCeEEEEEC-CCC---CEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         196 --------NPPVSFVKFS-PNG---KYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       196 --------~~~v~~~~~s-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                              ..++. +... .+|   +.++.++.+|.+.++|.++++++-...
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                    12222 2222 567   567778899999999999988876544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.47  E-value=8.6e-05  Score=60.63  Aligned_cols=196  Identities=10%  Similarity=0.093  Sum_probs=114.1

Q ss_pred             CeEEEEECCC--CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---C-eEEEEECCCce
Q psy4393          29 AVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---K-TLKIWELSSGK  102 (247)
Q Consensus        29 ~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~v~d~~~~~  102 (247)
                      ....++|+|+  +..|+.+...+.|+.++..++..... .........++++++|+++++....   . .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999985  44455555448899999877665443 3344558899999999955444321   1 23333322211


Q ss_pred             E-EEEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEe-ecCC-CCCeEEEEECCCCCEEE-EecCCCeE
Q psy4393         103 C-LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKT-LPAH-SDPVSAVHFNRDGSLIV-SSSYDGLC  177 (247)
Q Consensus       103 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~-~~~i~~~~~~~~~~~l~-~~~~dg~i  177 (247)
                      . ...+. .......++++| ++.+.++-..++.|+.+|..++..... +... ...-..++++|+++.|+ +-.....|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1 01111 112234567888 677766666778899999886654222 2211 12234699999998554 44556789


Q ss_pred             EEEeCC--Cceee--eeeccC--------------CCCCeEEEEE---------CCCCCEEEEEEcCCeEEEEECC
Q psy4393         178 RIWDTA--SGQCL--KTLIDD--------------DNPPVSFVKF---------SPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       178 ~v~d~~--~~~~~--~~~~~~--------------~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..++..  ++...  ..+...              .-..-..+++         +++|.+.++-...++|+.++..
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence            987764  22211  111110              0012356888         7777666666667899999853

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.45  E-value=5.6e-05  Score=58.79  Aligned_cols=155  Identities=11%  Similarity=0.123  Sum_probs=106.4

Q ss_pred             eEEEEECCCCCEEEEEc-CCCeEEEEECCCceEEEEEecC-------CccEEEEEE---cCCCCEEEEee----------
Q psy4393          72 ISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLKTLKGH-------SNYVFCCNF---NPQSNLIVSGS----------  130 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~----------  130 (247)
                      -.+++|++....+..++ ..+.|..|+...+.........       ...+..+.|   .|++.++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            45678987555555554 7899999998755433322111       113578999   68877777543          


Q ss_pred             ---CCCCEEEEECC---CCeEEEeecC-------------CCCCeEEEEECCCCCEEEEecCC-CeEEEEeCCCceeeee
Q psy4393         131 ---FDESVRIWDVR---TGKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKT  190 (247)
Q Consensus       131 ---~d~~i~v~d~~---~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~  190 (247)
                         .+..+..||+.   +++.+.....             .......|+..++|+..++++.. +.|..++..... ...
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eee
Confidence               25679999999   7766544321             11247889999999999988888 888888776542 222


Q ss_pred             eccC-----CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         191 LIDD-----DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       191 ~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      +...     .....+.++++|+|..|++....|+|..+|.+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2111     122356899999999999987799999999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.43  E-value=0.00039  Score=56.10  Aligned_cols=191  Identities=8%  Similarity=-0.006  Sum_probs=120.4

Q ss_pred             EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCc----eEEEEEecCCccEE
Q psy4393          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSG----KCLKTLKGHSNYVF  115 (247)
Q Consensus        41 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~  115 (247)
                      +|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|+.+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444433 4678888887655544443 345678999998666554 4455788988888652    22233333344567


Q ss_pred             EEEEcC-CCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeec
Q psy4393         116 CCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLI  192 (247)
Q Consensus       116 ~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~  192 (247)
                      .+++++ .+++.++-...+.|.+.++........+.........++++|.+..|+.+..  .+.|...++.... ...+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE
Confidence            788887 4555555566788999998765443333333445688999997666665542  3678888886543 22332


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEE
Q psy4393         193 DDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       193 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~  234 (247)
                      ...-..-..|++++++..|+.+.. .++|..+|.+......+.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  284 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence            222234578999998888887764 578999998766554443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=2e-05  Score=64.34  Aligned_cols=154  Identities=10%  Similarity=0.107  Sum_probs=95.3

Q ss_pred             eEEEEECC-CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CC----CEEEEECCCCeE
Q psy4393          72 ISDVAWSS-DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE----SVRIWDVRTGKC  145 (247)
Q Consensus        72 v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v~d~~~~~~  145 (247)
                      ...++++| ++..|..+...+.|+.+|+.++.... +.........++++++++.++.+.. ++    .+..++......
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            46788998 45556555554889999988765433 3334455778999999995555543 22    233344322111


Q ss_pred             -EEeecCCCCCeEEEEECC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEE
Q psy4393         146 -LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKL  222 (247)
Q Consensus       146 -~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v  222 (247)
                       ...+.. ......++++| ++.++++-..++.|..++...+.............-..++|+|+|++|+.+. ..++|..
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence             112211 12235678999 7777777667889999999876542222222222346799999999666665 5679999


Q ss_pred             EECCC
Q psy4393         223 WDSKV  227 (247)
Q Consensus       223 wd~~~  227 (247)
                      ++.+.
T Consensus       297 ~~~d~  301 (430)
T 3tc9_A          297 SDYDW  301 (430)
T ss_dssp             EEEET
T ss_pred             EeCCc
Confidence            87653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.35  E-value=0.0011  Score=58.07  Aligned_cols=205  Identities=7%  Similarity=-0.022  Sum_probs=121.4

Q ss_pred             CCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCC----eEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCC
Q psy4393          27 TKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS  100 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~  100 (247)
                      ...+..++|++.+..|+ +-...+.|+.+++...    .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            45567888888555544 4445577887777542    2223333233456778888776544 5556678999999875


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeE
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC  177 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  177 (247)
                      ......+.........++++|.+..|+....  .+.|...++........+...-.....|++++.+..|+.+ .....|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            5443333334455778999997666655443  2678888886544333333333467889999776666655 445689


Q ss_pred             EEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393         178 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  233 (247)
                      ..+++............. -..-..|++.  +..|+.+. ..++|...|..++..+.+
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEE
Confidence            999986543322222111 1122345553  44566555 457888888766644333

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=8.3e-05  Score=65.07  Aligned_cols=200  Identities=13%  Similarity=0.071  Sum_probs=103.3

Q ss_pred             EEEEECCCCCEEEEEeCC-----CeEEEEecCCCeE--EEEEec-ccCCeEEEEECCCCCEEEEEcC---CCeEEEEECC
Q psy4393          31 SSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKF--EKTISG-HKLGISDVAWSSDSRLLVSGSD---DKTLKIWELS   99 (247)
Q Consensus        31 ~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~   99 (247)
                      .+++|+|||+.|+....+     ..|.++++.++..  ...+.. ...-...+.|+|||++|+..+.   ...|.++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            367899999988776654     2577777765432  222222 2223567899999998876552   3468888987


Q ss_pred             Cc--eE-EEEE-ecCCccEEEEEEcCCCCEEEEeeCC----CCEEEEECCCCeEEEe-ecCCCC--CeEEEEECCCCCEE
Q psy4393         100 SG--KC-LKTL-KGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKT-LPAHSD--PVSAVHFNRDGSLI  168 (247)
Q Consensus       100 ~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l  168 (247)
                      ++  +. +..+ ...........|+.++.+++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.++
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv  382 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLV  382 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEE
T ss_pred             CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEE
Confidence            65  22 0223 2233444555554444444444433    2566777764222222 222332  34445554 23345


Q ss_pred             EEecCCCe--EEEEeC-------CCceeeeeeccCCCCCeEEEEE----CCCCCEE-EEEEcC---CeEEEEECCCcceE
Q psy4393         169 VSSSYDGL--CRIWDT-------ASGQCLKTLIDDDNPPVSFVKF----SPNGKYI-LAATLD---NTLKLWDSKVVTPA  231 (247)
Q Consensus       169 ~~~~~dg~--i~v~d~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l-~~~~~d---g~i~vwd~~~~~~~  231 (247)
                      ++...++.  +.++|+       .+++....+.......+..+.+    ++++..+ ++.+..   +.+..+|..+++..
T Consensus       383 ~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          383 VAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             EEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             EEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            55566674  556675       3333122222222222333322    4465544 443332   46777777665543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00046  Score=60.58  Aligned_cols=195  Identities=13%  Similarity=0.059  Sum_probs=121.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ..|.++...++|.+. .|+.++-|..|+..++......   ......|.++...+++.+.+ |+.++-+..++..+++..
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            458888888887754 4555566888886543322111   11235688888888877554 555566888898776543


Q ss_pred             EEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-----CCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         105 KTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       105 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ....  .....|.++...+++.+.+. +. +.+..+|..+++........     ...+.++..+++|.+.+....+| +
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence            2211  12356888888887775554 44 56889998776533222211     35789999999998666443344 6


Q ss_pred             EEEeCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         178 RIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ..||..+++... +...   ....|.++..+++|.+.++ +.+|.|..||.+...
T Consensus       518 ~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          518 GIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD  570 (781)
T ss_dssp             EEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred             EEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence            778887665332 2211   1345788888888875554 446665888876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.34  E-value=0.00039  Score=58.99  Aligned_cols=195  Identities=15%  Similarity=0.052  Sum_probs=120.5

Q ss_pred             CCEEEEEeCCCeEEEEecCCCeEEEEEecccCC-e--------EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-I--------SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        39 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v--------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      +..++.++.++.|.-+|..+++.+......... .        ..++.  .+..++.++.++.+..+|.++++.+.....
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            344555555455888999999988777543211 0        11122  356778888899999999999988766543


Q ss_pred             CCc----cE---EEEEEc-CCCC-EEEEeeC------CCCEEEEECCCCeEEEeecCCCCC-------------------
Q psy4393         110 HSN----YV---FCCNFN-PQSN-LIVSGSF------DESVRIWDVRTGKCLKTLPAHSDP-------------------  155 (247)
Q Consensus       110 ~~~----~v---~~~~~~-~~~~-~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~-------------------  155 (247)
                      ...    .+   ..+.-. .+++ .+++++.      ++.|+.+|..+|+.+.........                   
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            221    01   011111 1233 5666543      789999999999877654321100                   


Q ss_pred             ----------------------eEEEEECCCCCEEEEecC--------------------C----CeEEEEeCCCceeee
Q psy4393         156 ----------------------VSAVHFNRDGSLIVSSSY--------------------D----GLCRIWDTASGQCLK  189 (247)
Q Consensus       156 ----------------------i~~~~~~~~~~~l~~~~~--------------------d----g~i~v~d~~~~~~~~  189 (247)
                                            ...++++|...+++.+..                    |    +.|..+|..+++.+=
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                  113456676667766552                    2    589999999998765


Q ss_pred             eeccC-C--------CCCeEEEEEC-CCCC---EEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         190 TLIDD-D--------NPPVSFVKFS-PNGK---YILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       190 ~~~~~-~--------~~~v~~~~~s-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      .+... +        ..++. +... .+|+   .++.++.+|.+.++|.++++++-....
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            44321 1        12222 2222 5674   788899999999999999988766544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.28  E-value=8e-06  Score=70.77  Aligned_cols=207  Identities=8%  Similarity=0.012  Sum_probs=113.1

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCeEEEEecCC----CeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCc
Q psy4393          28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~  101 (247)
                      ..+..++|++.+..|+.+. ..+.|+.++...    ......+.........+++.+.+ .++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456788988766666543 456788887754    11111121111234567887644 44455456778999998755


Q ss_pred             eEEEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEecCCCeEE
Q psy4393         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCR  178 (247)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  178 (247)
                      .....+.........++++|.+..|+....  .+.|..+++........+...-.....|+++|++..| ++-+..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            433333322233456788886555544432  2678887775332211111112334678999875544 4555667899


Q ss_pred             EEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ++|+.... ...+...  ....-..+++..+ .++++....++|..+|..+++.+.++..
T Consensus       566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            99986533 2222211  1111123445443 3344444568999999877665555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.28  E-value=0.001  Score=54.31  Aligned_cols=196  Identities=10%  Similarity=0.104  Sum_probs=111.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCCCeE-EEEEecccCCeEEEEECC-CCCEEEEEcCCCeEEEEECC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKF-EKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~   99 (247)
                      ......++|+++|+++++ ...+     .+...+...+.. ...+. .......++++| ++.++++-..++.|+.++..
T Consensus       181 ~~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCCEEEE-cCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            345788999999994444 3321     133333221111 11222 233456688999 67766666678899999988


Q ss_pred             CceEEEEE-ecC-CccEEEEEEcCCCCEEE-EeeCCCCEEEEECC--CCeE--EEeecC---------------CCCCeE
Q psy4393         100 SGKCLKTL-KGH-SNYVFCCNFNPQSNLIV-SGSFDESVRIWDVR--TGKC--LKTLPA---------------HSDPVS  157 (247)
Q Consensus       100 ~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~--~~~~--~~~~~~---------------~~~~i~  157 (247)
                      ++.....+ ... ...-..++++|+++.|+ +-...+.|+.++..  ++..  ...+..               .-....
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  338 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN  338 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence            66652222 211 12234689999998554 44556789998765  2211  011110               012346


Q ss_pred             EEEE---------CCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-----------------CCCeEEEEEC-CCCCE
Q psy4393         158 AVHF---------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----------------NPPVSFVKFS-PNGKY  210 (247)
Q Consensus       158 ~~~~---------~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~v~~~~~s-~~~~~  210 (247)
                      .+++         .+++.++++-.....|+.++. ++... .+....                 -..-..++++ ++|.+
T Consensus       339 giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l  416 (433)
T 4hw6_A          339 QGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF  416 (433)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred             cEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence            6888         777777777777788999985 44332 221110                 0123568888 55555


Q ss_pred             EEEEEcCCeEEEEECC
Q psy4393         211 ILAATLDNTLKLWDSK  226 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~  226 (247)
                      +++=...++|+.++..
T Consensus       417 yVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          417 YIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEecC
Confidence            4444456788887653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.28  E-value=0.00033  Score=52.71  Aligned_cols=169  Identities=13%  Similarity=0.111  Sum_probs=104.3

Q ss_pred             EecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEEEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393          65 ISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (247)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (247)
                      +.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .......+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            334445689999999876655 46678889999987 777666642 224567788888887767655677888888765


Q ss_pred             CeE---EEeec------CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC---ceeeeeec------cCCCCCeEEEEE
Q psy4393         143 GKC---LKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLI------DDDNPPVSFVKF  204 (247)
Q Consensus       143 ~~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~------~~~~~~v~~~~~  204 (247)
                      ...   +....      ........++++|.+..|+++.......+|....   ...+....      .........+++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            432   22221      1233468999999987777666554444444321   11111110      112234578899


Q ss_pred             CCCCCEEE-EEEcCCeEEEEECCCcceEEEEc
Q psy4393         205 SPNGKYIL-AATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       205 s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +|....|+ .....+.|.++|.+.. ++..+.
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~  211 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLVGE-VIGEMS  211 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCC-EEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcCCCC-EEEEEE
Confidence            98765554 4556678888886644 444433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0018  Score=56.78  Aligned_cols=197  Identities=12%  Similarity=0.113  Sum_probs=123.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe------c---ccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------G---HKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      ...|.++...++|.+ ..|+.++-|..++...........      .   ....|.++...++|.+. .|+.++-+..|+
T Consensus       312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence            356889999988874 445666778888876544332211      0   13458888888887755 455455577888


Q ss_pred             CCCceEEEEE---ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEec
Q psy4393          98 LSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus        98 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ..++......   ......|.++...+++.+.+ |+.++.+..+|..+++.....  ......|.++...+++.+.+.. 
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-  467 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-  467 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-
Confidence            7654432211   11235688888888887665 565667889998776543221  1234578999988888765544 


Q ss_pred             CCCeEEEEeCCCceeeeeeccC----CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         173 YDGLCRIWDTASGQCLKTLIDD----DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      . +-+..||..+++........    ....+.++..+++|.+.+ |+.++-|..||.+...
T Consensus       468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            4 55888998776543322111    134688898999887554 4544447778876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=0.0021  Score=56.39  Aligned_cols=185  Identities=6%  Similarity=-0.034  Sum_probs=114.9

Q ss_pred             CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCc----eEEEEEecCCccEEEEEEcCC
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSG----KCLKTLKGHSNYVFCCNFNPQ  122 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~  122 (247)
                      ...|+..++........+. ....+..++|.+....| ++-...+.|+.+++...    .....+.........+++++.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            4567777776555444443 34557789998855544 55556678888888642    222233323344567888876


Q ss_pred             CC-EEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393         123 SN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       123 ~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                      +. ++++-...+.|.+.++........+.........|+++|.+..|+.+..  .+.|...++.... ...+.......-
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P  560 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  560 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCc
Confidence            64 4455566788999998755433333333445788999997666665543  2678888886543 333333333345


Q ss_pred             EEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEE
Q psy4393         200 SFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~  234 (247)
                      ..|++++.+..|+.+.. .++|..++.+......+.
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence            78999988888877764 468999998766554443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.20  E-value=0.0012  Score=51.73  Aligned_cols=190  Identities=13%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCC-Ce-EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      +.+..+.+.+++..++++ .+|.|  |...+ ++ ...........+..+.+.+++..++++...+..+-.|- .+....
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~  197 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE  197 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence            346677776666655554 45544  22222 32 22333344456889999999887776654444443332 122111


Q ss_pred             EE-ecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC----CCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         106 TL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       106 ~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      .+ ......+..+.+.+++.+++. +.+|.+++.+...++....+..    ....+..+.+.+++.+++++. +|.+ ++
T Consensus       198 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~  274 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC  274 (327)
T ss_dssp             EEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred             ECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence            11 223455777888888876654 4567777664222443333221    123578889998888777655 6655 33


Q ss_pred             eCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         181 DTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       181 d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      ..+.++.-......  ....+..+.|.+++ .+++++.+|.|.-++.
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            44444433333211  12346677787554 4667777898887764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.15  E-value=0.0015  Score=50.99  Aligned_cols=163  Identities=6%  Similarity=-0.052  Sum_probs=97.6

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc--CCCeEEEEECCCceEEE
Q psy4393          29 AVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCLK  105 (247)
Q Consensus        29 ~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~  105 (247)
                      ....+++.+.+. ++++-...+.|.+++.........+.........+++.|.+..|+.+.  ..+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            445678876444 444444567888888754433333333444578899998766665554  35788888876433222


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      .+...-..-..+++++++..|+.+ ...+.|..+|+..................+++.. +.++.+-...+.|..+|..+
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence            222333445789999866666554 4567899999864322222222233456677753 34455555678899999877


Q ss_pred             ceeeeeec
Q psy4393         185 GQCLKTLI  192 (247)
Q Consensus       185 ~~~~~~~~  192 (247)
                      ++....+.
T Consensus       239 G~~~~~i~  246 (318)
T 3sov_A          239 GEGLREIH  246 (318)
T ss_dssp             CCSCEEEE
T ss_pred             CCceEEEe
Confidence            76554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.12  E-value=0.0031  Score=53.89  Aligned_cols=203  Identities=6%  Similarity=-0.014  Sum_probs=116.5

Q ss_pred             CCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeE-EEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEECCCceE
Q psy4393          27 TKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~  103 (247)
                      .+....++|++.+..|+.+. ..+.|..++...... ...+.........+++.+.+.. +++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            44577899998766665544 457788887754422 2233333346788999986554 45556678999999875433


Q ss_pred             EEEEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEE
Q psy4393         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW  180 (247)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~  180 (247)
                      ...+.........++++|.+..|+....  .+.|...++............-.....+++++++..|+.+ ...+.|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            2222233334567889887655555443  3566666765332222222223456889999876655554 456789999


Q ss_pred             eCCCceeeeeecc-CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393         181 DTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       181 d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  233 (247)
                      |+..... ..+.. ....+ ..+++.++  .|+.+. ..+.|...|..+++...+
T Consensus       199 ~~dG~~~-~~~~~~~~~~P-~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          199 NLDGTNR-QAVVKGSLPHP-FALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             SSSCCEE-C---------C-CCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             cCCCCcc-EEEEeCCCCCc-eEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            8875432 22222 11112 34666655  555554 567899999876654333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.10  E-value=0.00088  Score=57.65  Aligned_cols=187  Identities=12%  Similarity=0.076  Sum_probs=107.4

Q ss_pred             eEEEEECCCCCEEEEEeC-CCeEEEEecCCCeEEEEEecccC-CeEEEEECCCCCEEEEEc-CC-----CeEEEEECCCc
Q psy4393          30 VSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGS-DD-----KTLKIWELSSG  101 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~  101 (247)
                      ..++++..++++++.|+. +..+.+||..+......-.-... .-...+..++++.++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            345678889998888874 45899999877654432111111 123455667899888888 34     46889998775


Q ss_pred             eEEEE-------------------------EecCCc---------------------------------------cEEEE
Q psy4393         102 KCLKT-------------------------LKGHSN---------------------------------------YVFCC  117 (247)
Q Consensus       102 ~~~~~-------------------------~~~~~~---------------------------------------~v~~~  117 (247)
                      +....                         +.+..+                                       .-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            43221                         000000                                       00111


Q ss_pred             EEc-CCCCEEEEeeCCC-----------CEEEEECCCCeEEEee--cCCCCC-eEEEEECCCCCEEEEecCC--------
Q psy4393         118 NFN-PQSNLIVSGSFDE-----------SVRIWDVRTGKCLKTL--PAHSDP-VSAVHFNRDGSLIVSSSYD--------  174 (247)
Q Consensus       118 ~~~-~~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~~~~~d--------  174 (247)
                      .+. .++++++.|+.++           .+.+||..+.+-....  ...... -.++...|++++++.|+.+        
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~  484 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  484 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence            121 2566777777532           5777787765433222  111111 2345667899999998854        


Q ss_pred             ---CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEc
Q psy4393         175 ---GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~  216 (247)
                         ..+.+||..+.+....-.... ........+.|+|+.++.|+.
T Consensus       485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence               468899988765432111111 111234456799999999884

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.07  E-value=0.0024  Score=50.54  Aligned_cols=194  Identities=12%  Similarity=0.166  Sum_probs=111.2

Q ss_pred             CeEEEEECCCCCEEEEEe------------CCCeEEEEecCC--CeEE-EEEec-----ccCCeEEEEECC--CCC-EE-
Q psy4393          29 AVSSVKFSPNGEWLASSS------------ADKLIKIWGAYD--GKFE-KTISG-----HKLGISDVAWSS--DSR-LL-   84 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~------------~dg~v~iw~~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l-   84 (247)
                      ..-.+...|+|..+++++            .+|.|.++|..+  .+.. ..+.+     .......+.+.+  ++. +| 
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            445667888886655552            689999999863  2222 12322     234566777755  454 34 


Q ss_pred             EEEcC--CCeEEEEECCCc--e--EEEEEecC-CccEEEEEEcCCCCEEEEee-----------------CCCCEEEEEC
Q psy4393          85 VSGSD--DKTLKIWELSSG--K--CLKTLKGH-SNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDV  140 (247)
Q Consensus        85 ~~~~~--d~~i~v~d~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~  140 (247)
                      ++-..  +..+.+|++...  .  .+..+.+. -.....+.+.++|.+.++..                 ..|.+.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  467778776543  2  22223222 23467888889988777643                 1234555554


Q ss_pred             CCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCC-ceeee-eeccCCCCCeEEEEECC-CCCEEEEEEc
Q psy4393         141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTAS-GQCLK-TLIDDDNPPVSFVKFSP-NGKYILAATL  216 (247)
Q Consensus       141 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~  216 (247)
                        ++ +..+...-...+.++|+||++.|+.+ +..+.|..|++.. ++... ..+ ........+++++ +|.+.+++..
T Consensus       211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence              32 22222222345789999999877665 4568899999863 32211 112 1223446789999 5988777764


Q ss_pred             C-CeEEEEECC
Q psy4393         217 D-NTLKLWDSK  226 (247)
Q Consensus       217 d-g~i~vwd~~  226 (247)
                      + ++|..|+..
T Consensus       287 ~g~~v~~~~P~  297 (355)
T 3sre_A          287 NGMRIFFYDAE  297 (355)
T ss_dssp             CHHHHHSCCTT
T ss_pred             CceEEEEECCC
Confidence            4 356666655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.98  E-value=0.0063  Score=52.07  Aligned_cols=203  Identities=9%  Similarity=-0.018  Sum_probs=123.6

Q ss_pred             CCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ..+..++|++.+..|+. -..++.|..++.........+.........+++.+.+..| .+-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45778999987666554 4456888888876544444443333346778888765544 555567889999987543322


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (247)
                      .+.........++++|....|+....  .+.|...++..... ..+...-.....+++++++..|+.+ ...+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            23233345678999986555555442  45677777754332 2222233456889999976666555 45678999998


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ..... ..+..... .-..+++..  ..|+.+. ..+.|...|..+++...++.
T Consensus       196 dG~~~-~v~~~~l~-~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          196 LGLNR-EVIADDLP-HPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             TSCSC-EEEEECCS-CEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCce-EEeeccCC-CceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            76433 22222222 234566654  3555554 57899999977665444433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0057  Score=50.51  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=91.6

Q ss_pred             eEEEEECC-CCCEEEEEeC-CCeEEEEecCCCeEEEEEecc---cCCeEEEEE-------CCCCCEEEEEcCCC------
Q psy4393          30 VSSVKFSP-NGEWLASSSA-DKLIKIWGAYDGKFEKTISGH---KLGISDVAW-------SSDSRLLVSGSDDK------   91 (247)
Q Consensus        30 v~~~~~s~-~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------   91 (247)
                      ...++|+| ++..|+.+.. .+.|++.|..++.........   ......++|       +++++.++.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56889998 3555555443 467888888776665544332   124788999       99999666665543      


Q ss_pred             -eEEEEECCC-ceEE-----EEEecCCccEEEEEEcC-CCCEEEEeeCCCCEEEEECC-------CCeE-----------
Q psy4393          92 -TLKIWELSS-GKCL-----KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVR-------TGKC-----------  145 (247)
Q Consensus        92 -~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-------~~~~-----------  145 (247)
                       .+.+++... +...     ..+.... ....++.+| ++.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665333 1211     1222111 234567888 55666666677889999987       4442           


Q ss_pred             EEe-ecC-CCCCeEEEEECCCCCEEEE-ecCCCeEEEEeC
Q psy4393         146 LKT-LPA-HSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDT  182 (247)
Q Consensus       146 ~~~-~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~  182 (247)
                      ... +.. .......++++|++..|+. -+....|+.++.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            111 111 1234578999999995444 455678888554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.88  E-value=0.00012  Score=63.41  Aligned_cols=185  Identities=7%  Similarity=-0.033  Sum_probs=105.2

Q ss_pred             CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEE-cCCCeEEEEECCC----ceEEEEEecCCccEEEEEEcCC
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSS----GKCLKTLKGHSNYVFCCNFNPQ  122 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~  122 (247)
                      .+.|+..+.........+.. ...+..++|.+.+..|+.+ ...+.|+.+++..    ......+.........+++++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35677777765544333322 2346678899876666555 4467888888875    2211112111122345677754


Q ss_pred             -CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393         123 -SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       123 -~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                       ++++++-...+.|.++++........+.........++++|.+.+|+.+..  .+.|..+++.... ...+.......-
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence             445555556778999998755433333322234467889987665555443  2677777765432 222222222223


Q ss_pred             EEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEE
Q psy4393         200 SFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~  234 (247)
                      ..|+|+|++..|+.+. ..++|.++|.+......+.
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            5689999877776665 4579999998765444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.87  E-value=0.0022  Score=49.26  Aligned_cols=184  Identities=10%  Similarity=0.135  Sum_probs=95.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEecCCCe---EEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCce
Q psy4393          38 NGEWLASSSAD-----KLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK  102 (247)
Q Consensus        38 ~~~~l~~~~~d-----g~v~iw~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~  102 (247)
                      ++..++.|+.+     ..+.+||..+..   ....-.  ...........  +++.++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666666654     358888887655   333211  11111122222  45666666543     368889988765


Q ss_pred             EEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEEe--ecCCCCCeEEEEECCCCCEEEEecC
Q psy4393         103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ....  +......-..+.  .++.+++.|+.+     ..+.+||+.+.+-...  +........++.+  ++.+++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            3322  111111111222  256777777754     3588999887653221  2111111222233  5677777776


Q ss_pred             C-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         174 D-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       174 d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      +     ..+.+||+.+.+....-.... ......+.+  +++.++.|+.+     +.+.+||.++.+
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            4     468899998876443211111 111122222  56777777755     468889987653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.84  E-value=0.011  Score=50.57  Aligned_cols=204  Identities=9%  Similarity=0.031  Sum_probs=120.4

Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEEec------ccCCeEEEEECCCCCEE-EEEcCCCeEEEEECC
Q psy4393          28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLL-VSGSDDKTLKIWELS   99 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~   99 (247)
                      ..+.+++|++....|+-+. ..+.|+.++.........+..      .......+++...++.| .+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            4577899988666665444 457787777654333333322      23357889998876655 566677899999986


Q ss_pred             CceEEEEE-ecCCccEEEEEEcCC-CCEEEEeeCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec-CC
Q psy4393         100 SGKCLKTL-KGHSNYVFCCNFNPQ-SNLIVSGSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YD  174 (247)
Q Consensus       100 ~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  174 (247)
                       ++....+ .........++++|. +.++.+-....  .|...++............-.....+++++....|+.+. ..
T Consensus       420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence             4433333 334456788999994 44444433222  466666643322222222234568899999877666554 45


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +.|..+|+.... .+.+..........+++..  ..|+.+. ..+.|...|..++.....++
T Consensus       499 ~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          499 RRIESSDLSGAN-RIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             TEEEEEETTSCS-CEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred             CEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence            789999986433 3333322222335566654  3555554 55789889987665444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.83  E-value=0.003  Score=48.68  Aligned_cols=184  Identities=7%  Similarity=0.069  Sum_probs=96.2

Q ss_pred             CCCEEEEEeCC----CeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCC------CeEEEEECCCceEEE
Q psy4393          38 NGEWLASSSAD----KLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDD------KTLKIWELSSGKCLK  105 (247)
Q Consensus        38 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~  105 (247)
                      ++..++.|+.+    ..+.+||..+......-...  ........+  +++.++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45566666644    56888888776554332111  111122222  56666777654      358889988765332


Q ss_pred             E--EecCCccEEEEEEcCCCCEEEEeeC---------CCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEec
Q psy4393         106 T--LKGHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      .  +......-..+.  .++.+++.|+.         -..+.+||+.+.+-..  .+......-..+.+  ++++++.|+
T Consensus       133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeC
Confidence            2  111111111122  25566777654         3458899998764222  12111111222222  566777776


Q ss_pred             CC-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         173 YD-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      .+     ..+.+||+.+.+....-.... ......+.+  ++++++.|+.+     +.+.+||..+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            54     358899998865433211111 111222333  66777888754     578999987653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.80  E-value=0.0024  Score=49.09  Aligned_cols=184  Identities=10%  Similarity=0.154  Sum_probs=94.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEecCCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCC-----eEEEEECCCceEEE
Q psy4393          38 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCLK  105 (247)
Q Consensus        38 ~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~  105 (247)
                      ++..++.|+.+     ..+.+||..+.+....-..  .........+  ++..++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            45566666644     3577888776654332111  1111122222  456666666543     57788988765332


Q ss_pred             E--EecCCccEEEEEEcCCCCEEEEeeCC-------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCC
Q psy4393         106 T--LKGHSNYVFCCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (247)
Q Consensus       106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d  174 (247)
                      .  +.........+.  .++.+++.|+.+       ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            2  111111111122  245677777643       358899988765322  22211112222222  56777777764


Q ss_pred             -----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCcc
Q psy4393         175 -----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVVT  229 (247)
Q Consensus       175 -----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~  229 (247)
                           ..+.+||+.+.+....-..... .....+.  .+++.++.|+.++     .+.+||..+.+
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                 3688999988764332111111 1112222  2567777777553     58999987654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.0046  Score=51.09  Aligned_cols=154  Identities=17%  Similarity=0.157  Sum_probs=92.6

Q ss_pred             eEEEEECCC-CCEE-EEEcCCCeEEEEECCCceEEEEEecC---CccEEEEEE-------cCCCCEEEEeeCCC------
Q psy4393          72 ISDVAWSSD-SRLL-VSGSDDKTLKIWELSSGKCLKTLKGH---SNYVFCCNF-------NPQSNLIVSGSFDE------  133 (247)
Q Consensus        72 v~~~~~~~~-~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------  133 (247)
                      ...|+|+|. +..| ++....+.|++.|.+++.........   ......++|       ++++..|+.....+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            457889983 4444 44444567889998877655433322   224778999       99998666555443      


Q ss_pred             -CEEEEECCC-CeEE-----EeecCCCCCeEEEEECCC-CCEEEEecCCCeEEEEeCC-------Ccee-----------
Q psy4393         134 -SVRIWDVRT-GKCL-----KTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTA-------SGQC-----------  187 (247)
Q Consensus       134 -~i~v~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~-------~~~~-----------  187 (247)
                       .+.+++... +...     ..+.... ....++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             266665333 1111     1111111 2245788994 5556666778899999987       4443           


Q ss_pred             eeee-ccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         188 LKTL-IDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       188 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      ...+ .......-..++|+|+|++|+.+. ...+|+.+|.+
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            1121 122223346799999999766665 45789996654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.76  E-value=0.0075  Score=47.35  Aligned_cols=141  Identities=11%  Similarity=0.251  Sum_probs=91.3

Q ss_pred             CCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCC----CC---EEEEee-C--CCCEEEEEC--CCCeEEE
Q psy4393          80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ----SN---LIVSGS-F--DESVRIWDV--RTGKCLK  147 (247)
Q Consensus        80 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~v~d~--~~~~~~~  147 (247)
                      ...+++...+.+-+.+||+ +++.+..+..  +.+..+..-|+    +.   ++++.. .  +..|.+|++  .++. +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4566777777889999999 7887777653  34555554442    22   223333 3  568999977  3333 44


Q ss_pred             eecC-------CCCCeEEEEE--CCC-CC-EEEEecCCCeEEEEeCC---C----ceeeeeeccCCCCCeEEEEECCCCC
Q psy4393         148 TLPA-------HSDPVSAVHF--NRD-GS-LIVSSSYDGLCRIWDTA---S----GQCLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       148 ~~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~~---~----~~~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      .+..       ....+..+++  +|. +. ++++...+|.+..|++.   .    .+.++++..  .+.+..+..++...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYG  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCC
Confidence            4421       1133455666  674 44 67778888999888873   2    233444433  34678899999999


Q ss_pred             EEEEEEcCCeEEEEECC
Q psy4393         210 YILAATLDNTLKLWDSK  226 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~  226 (247)
                      .|+.+-++.-|..+|..
T Consensus       193 ~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEEETTTEEEEEECS
T ss_pred             eEEEecccceEEEEeCC
Confidence            99999999888888855

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.63  E-value=0.013  Score=47.15  Aligned_cols=145  Identities=15%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             CCCCCEEEEEcCCCeEEEEECCCceEEEEEecC----CccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---------
Q psy4393          78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---------  144 (247)
Q Consensus        78 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------  144 (247)
                      +.+|..++.+ .++.||..++.....-+.++..    -..+..+..+|+|.++|..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3445555544 2467777777644333344432    22467789999999999875 4578999887322         


Q ss_pred             ---EEEeecC------CCCCeEEEEECCC---CCEEEEecCCCeEEEEeCCCceeee-eec--------cCCCCCeEEEE
Q psy4393         145 ---CLKTLPA------HSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLK-TLI--------DDDNPPVSFVK  203 (247)
Q Consensus       145 ---~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~-~~~--------~~~~~~v~~~~  203 (247)
                         ..+.+..      ...+|..+.|+|-   +..|++-..|+.|++||+....... .+.        ......+..++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               0112221      2467999999995   4578888899999999997522111 111        01124577889


Q ss_pred             ECCCCCEEEEEE--cCCeEEEEE
Q psy4393         204 FSPNGKYILAAT--LDNTLKLWD  224 (247)
Q Consensus       204 ~s~~~~~l~~~~--~dg~i~vwd  224 (247)
                      |..++-.|+..+  .+|.|.-.-
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEES
T ss_pred             EcCCCcEEEEEecCCCCCEEEEC
Confidence            999887777755  667776554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.62  E-value=0.025  Score=48.31  Aligned_cols=199  Identities=6%  Similarity=0.007  Sum_probs=113.4

Q ss_pred             CCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      ..+.+++|++.+..|+.+ ...+.|+.++.........+.........+++.+.+ +.+.+-...+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            345678888755555443 346778878775544333343333456788888644 455565667899999987543322


Q ss_pred             EEecCCccEEEEEEcCCCCEEEEeeC--CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeC
Q psy4393         106 TLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (247)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (247)
                      .+...-.....++++|....|+....  ...|...++............-.....+++++++..|+.+ +..+.|..+++
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            22333445678899997445544432  3566666664322211222223456789999876666655 44578888988


Q ss_pred             CCceeeeeecc-CCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcce
Q psy4393         183 ASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTP  230 (247)
Q Consensus       183 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~  230 (247)
                      ..... +.+.. ....+ ..+++..+  +|+.+. ..+.|...|..++..
T Consensus       509 dG~~~-~~~~~~~l~~P-~glav~~~--~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          509 DGTGR-RVLVEDKIPHI-FGFTLLGD--YVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             SSCCC-EEEEECCCCSS-CCEEEETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred             CCCce-EEEeccCCCCc-EEEEEECC--EEEEeecCCCeEEEEEcCCCce
Confidence            65432 22221 11112 23444433  565555 346787777776643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.60  E-value=0.014  Score=45.18  Aligned_cols=188  Identities=10%  Similarity=0.062  Sum_probs=93.0

Q ss_pred             CCCCCEEEEEeC----C-------CeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEEEEEcCC--------CeEE
Q psy4393          36 SPNGEWLASSSA----D-------KLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDD--------KTLK   94 (247)
Q Consensus        36 s~~~~~l~~~~~----d-------g~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--------~~i~   94 (247)
                      ..++..++.|+.    +       ..+..||..+.+....-...  ........+  ++..++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346677666663    1       12677887766543221100  111111222  45566666632        3588


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-C-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCC
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-D-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~  166 (247)
                      +||..+.+-...-..............++.+++.|+. +     ..+.+||+.+.+-..  .+......-.++.+  +++
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  198 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGR  198 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCE
Confidence            8998876532211111111111111235567777776 2     358899988764221  12111111222222  567


Q ss_pred             EEEEecCCC-----eEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC--------------CeEEEEECC
Q psy4393         167 LIVSSSYDG-----LCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD--------------NTLKLWDSK  226 (247)
Q Consensus       167 ~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~  226 (247)
                      +++.|+.++     .+.+||+.+.+....-.... ......+.+  ++++++.|+.+              +.+.+||..
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  276 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEE  276 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred             EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence            777777654     58889998875443211111 111122222  56777777753              247788887


Q ss_pred             Ccc
Q psy4393         227 VVT  229 (247)
Q Consensus       227 ~~~  229 (247)
                      +.+
T Consensus       277 ~~~  279 (315)
T 4asc_A          277 EKK  279 (315)
T ss_dssp             TTE
T ss_pred             CCh
Confidence            653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.54  E-value=0.012  Score=45.34  Aligned_cols=180  Identities=13%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             EEEEEeC--CCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC----CeEEEEECCCceEEEEEe--cC
Q psy4393          41 WLASSSA--DKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD----KTLKIWELSSGKCLKTLK--GH  110 (247)
Q Consensus        41 ~l~~~~~--dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~  110 (247)
                      +++.|+.  ...+..||..+.+....-.  ..........  .++..++.|+.+    ..+.+||..+.+....-.  ..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4445553  3568888887765443211  1111112222  245666666644    578889988775432211  11


Q ss_pred             CccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC---------
Q psy4393         111 SNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY---------  173 (247)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~---------  173 (247)
                      ...-..+.  -++.+++.|+.+      ..+.+||+.+.+-..  .+......-..+.+  ++++++.|+.         
T Consensus        92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence            11111222  256677777765      358899988765322  12111111122222  5666676664         


Q ss_pred             CCeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCc
Q psy4393         174 DGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVV  228 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~  228 (247)
                      -..+.+||+.+.+....-..... ..-..+.+  ++++++.|+.+     ..+.+||..+.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            34588999988754332111111 11122222  56677776643     46888887664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.53  E-value=0.007  Score=46.43  Aligned_cols=184  Identities=13%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CCCEEEEEe-CC-----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCce--
Q psy4393          38 NGEWLASSS-AD-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK--  102 (247)
Q Consensus        38 ~~~~l~~~~-~d-----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~--  102 (247)
                      ++..++.|+ .+     ..+..||..+.+....-.  ..........  .++..++.|+.+     ..+.+||..+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344555555 22     367888887665433211  1111111222  245666666644     368899988765  


Q ss_pred             -EEEE--EecCCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeE--EEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393         103 -CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       103 -~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                       ....  +......-..+..  ++.+++.|+.++     .+.+||+.+.+-  +..+......-.++.+  ++++++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             3221  1111111112222  567777776543     588899877652  2222222222222222  567777777


Q ss_pred             CC-----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         173 YD-----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      .+     ..+.+||+.+.+....-..... .....+.+  +++.++.|+.+     +.+.+||..+.+
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            54     3588999888764432111111 11122222  56777777754     468999987654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00077  Score=52.89  Aligned_cols=113  Identities=9%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEeccc-CCeEEEEE--CC-CCCEEEEE-cCCCeEEEEECCCceEEEEEecC----
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW--SS-DSRLLVSG-SDDKTLKIWELSSGKCLKTLKGH----  110 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~----  110 (247)
                      ..++.++.||.|.-+|..+|+....+.... .++....-  .+ ++..++.. ..||.+..++..+|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467788999999999999999998887541 22222110  01 22334343 58999999999887544333211    


Q ss_pred             CccEEE---EEE-c----CCCCEEEEeeCCCCEEEEECCCCeEEEeecCC
Q psy4393         111 SNYVFC---CNF-N----PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH  152 (247)
Q Consensus       111 ~~~v~~---~~~-~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  152 (247)
                      .+++..   ... .    -.+..+++|+.+|.+...|+++|+.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            111211   000 0    13567889999999999999999998887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.41  E-value=0.013  Score=44.90  Aligned_cols=182  Identities=9%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             CEEEEEeCC----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCceEEEEE-
Q psy4393          40 EWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCLKTL-  107 (247)
Q Consensus        40 ~~l~~~~~d----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~-  107 (247)
                      ..++.|+.+    ..+..||..+......-.  .....-..+..  ++..++.|+.+     ..+.+||..+.+....- 
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344455433    357788887665433211  11111111222  55666666644     35888998876533221 


Q ss_pred             -ecCCccEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCC-----
Q psy4393         108 -KGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD-----  174 (247)
Q Consensus       108 -~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  174 (247)
                       ......-..+.  .++.+++.|+.++     .+.+||+.+.+-..  .+........++.+  ++++++.|+.+     
T Consensus        95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred             CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence             11111111222  2566777777554     47788987765322  12211111222222  56667777643     


Q ss_pred             --CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         175 --GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                        ..+.+||+.+.+....-.... ......+.+  ++++++.|+.+     +.+.+||..+.+
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence              358899998776433211111 111122222  56777777754     468899987643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.37  E-value=0.022  Score=41.68  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=80.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe------EEEEEec-ccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------FEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+..      ....+-. .-....++.|.|+|.+.++  .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            47889999999986665  67877666653311      1122210 1111467889999998777  558887777533


Q ss_pred             ce-------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE------EEee-cCCCCCeEEEEECCCCC
Q psy4393         101 GK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC------LKTL-PAHSDPVSAVHFNRDGS  166 (247)
Q Consensus       101 ~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~-~~~~~~i~~~~~~~~~~  166 (247)
                      ..       ..+.-...-..+..+.+.|+|.+.+..  ++.++-....++..      ...+ ......-+-+.|.+++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            21       111112223457889999999988776  66654332221110      0111 11222334566888887


Q ss_pred             EEEEecCCCeE
Q psy4393         167 LIVSSSYDGLC  177 (247)
Q Consensus       167 ~l~~~~~dg~i  177 (247)
                      +.++.  +|.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            66655  6643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.36  E-value=0.018  Score=44.32  Aligned_cols=184  Identities=11%  Similarity=0.149  Sum_probs=94.0

Q ss_pred             CCCEEEEEeC----C-----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCC-----CeEEEEECCCc
Q psy4393          38 NGEWLASSSA----D-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSG  101 (247)
Q Consensus        38 ~~~~l~~~~~----d-----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~  101 (247)
                      ++..++.|+.    +     ..+.+||..+......-.  ..........+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4555566654    2     357788877665433211  11111122222  55666666533     35788998876


Q ss_pred             eEEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEec
Q psy4393         102 KCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       102 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      +....  +......-..+.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++.+++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            53321  1111111112222  56777777654     358899988764221  11111111222333  567777777


Q ss_pred             CC-----CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         173 YD-----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      .+     ..+.+||+.+.+....-..... .....+.  -++++++.|+.+     ..+.+||..+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            64     4688999988764432111111 1112222  256777777743     468889987654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.36  E-value=0.011  Score=45.60  Aligned_cols=184  Identities=10%  Similarity=0.116  Sum_probs=93.5

Q ss_pred             CCCEEEEEeCC----CeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcC----C-----CeEEEEECCCce
Q psy4393          38 NGEWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSD----D-----KTLKIWELSSGK  102 (247)
Q Consensus        38 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~v~d~~~~~  102 (247)
                      ++..++.|+.+    ..+.+||..+.+....-.  ...........  ++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45566666532    367888887765443211  11111111222  4566666654    2     357888988765


Q ss_pred             EEEE--EecCCccEEEEEEcCCCCEEEEeeCC-----CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC
Q psy4393         103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ....  +......-..+.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+......-.++.+  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            3221  1111111112222  56677777644     358889988765322  11111111222233  5677777775


Q ss_pred             C-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         174 D-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       174 d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      +     ..+.+||+.+.+....-.... ...-..+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            4     358899988765432211111 111122223  56777777654     568899976643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.26  E-value=0.046  Score=43.13  Aligned_cols=103  Identities=14%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--e---cccCCeEEEEECCC---CCEEEEEcC-C-----
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--S---GHKLGISDVAWSSD---SRLLVSGSD-D-----   90 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----   90 (247)
                      ..-.....++|.|+|+++++ ..+|.|.+++  ++......  .   ........++++|+   +..|..+.. .     
T Consensus        28 ~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           28 GGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            33455679999999985554 5679999988  44422111  1   12346789999998   455544332 2     


Q ss_pred             CeEEEEECCCce-----EE-EEEe---cCCccEEEEEEcCCCCEEEEee
Q psy4393          91 KTLKIWELSSGK-----CL-KTLK---GHSNYVFCCNFNPQSNLIVSGS  130 (247)
Q Consensus        91 ~~i~v~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  130 (247)
                      ..|..++...+.     .+ ..+.   ........+.|.|+|.+.++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            567777776431     11 1122   1111234688999998777644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.26  E-value=0.041  Score=42.50  Aligned_cols=188  Identities=7%  Similarity=0.071  Sum_probs=91.4

Q ss_pred             CCCCCEEEEEeC----CC-------eEEEEecCCCeEEEEE--ecccCCeEEEEECCCCCEEEEEcCC-------CeEEE
Q psy4393          36 SPNGEWLASSSA----DK-------LIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD-------KTLKI   95 (247)
Q Consensus        36 s~~~~~l~~~~~----dg-------~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v   95 (247)
                      ..++..++.|+.    ++       .+..||..+.+....-  ...........+  ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            446666667763    11       1667787665543221  111111112222  45666666643       25778


Q ss_pred             EECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC------CCCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCE
Q psy4393          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~  167 (247)
                      ||..+.+-...-..............++.+++.|+.      -..+.+||+.+.+-..  .+........++.+  ++++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  209 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKI  209 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             EeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEE
Confidence            898876543221111111111111245667777764      2358899998765222  12211111222222  5677


Q ss_pred             EEEecCC-----CeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcC--------------CeEEEEECCC
Q psy4393         168 IVSSSYD-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD--------------NTLKLWDSKV  227 (247)
Q Consensus       168 l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~~  227 (247)
                      ++.|+.+     ..+.+||+.+.+....-.... ......+.  .++++++.|+.+              ..+.+||..+
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            7777643     357789988765433211111 11112222  346777777653              4588888876


Q ss_pred             cc
Q psy4393         228 VT  229 (247)
Q Consensus       228 ~~  229 (247)
                      .+
T Consensus       288 ~~  289 (318)
T 2woz_A          288 KE  289 (318)
T ss_dssp             TE
T ss_pred             CE
Confidence            53

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.26  E-value=0.043  Score=42.73  Aligned_cols=184  Identities=14%  Similarity=0.090  Sum_probs=98.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe---cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      ..+.++.|++ +..++ ++..+.|.. ....++.-..+.   .....+..+.+.+++..++++ .++.+.. ....++.-
T Consensus        80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW  154 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW  154 (327)
T ss_dssp             CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred             ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence            3577888875 44444 455664433 222232211111   122346677776666655555 4554422 22223322


Q ss_pred             EEE-ecCCccEEEEEEcCCCCEEEEeeCCCCEE-EEEC--CCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         105 KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVR-IWDV--RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       105 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~-v~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      ..+ ......+..+.+.+++.+++.+. ++.+. -.|-  .+.+.+.  ......+..+.+.+++.++++ +.+|.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s  230 (327)
T 2xbg_A          155 QALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFS  230 (327)
T ss_dssp             EEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEE
T ss_pred             EEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEe
Confidence            222 23345678888999888777664 44443 3342  2333332  233456888899999886654 457877766


Q ss_pred             eCCCceeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEE
Q psy4393         181 DTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLK  221 (247)
Q Consensus       181 d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~  221 (247)
                      +...++........   ....+..+++.+++..++++ .+|.|.
T Consensus       231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~  273 (327)
T 2xbg_A          231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL  273 (327)
T ss_dssp             ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred             cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence            43334333222211   22347888899887766655 467663

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.23  E-value=0.032  Score=40.77  Aligned_cols=143  Identities=11%  Similarity=0.001  Sum_probs=80.7

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE------EEEEec-CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (247)
                      ..+.+++|+|+|.+.++  .+|.+.-.+..+...      ...+-. .-....++-|+|++.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46789999999986666  677766556544111      111210 1111356789999988877  568888777533


Q ss_pred             CeE-------EEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee-----eeeecc-CCCCCeEEEEECCCCC
Q psy4393         143 GKC-------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLID-DDNPPVSFVKFSPNGK  209 (247)
Q Consensus       143 ~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----~~~~~~-~~~~~v~~~~~s~~~~  209 (247)
                      ...       ...-...-..+..+.+.|+|.+.++.  |+.+.-.....+..     ...... ..-.....+.|.+++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            211       11111112457899999999977776  77754332221110     011111 1112345577999987


Q ss_pred             EEEEEEcCCeE
Q psy4393         210 YILAATLDNTL  220 (247)
Q Consensus       210 ~l~~~~~dg~i  220 (247)
                      ..++.  +|.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            66666  6744

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.09  E-value=0.047  Score=42.12  Aligned_cols=177  Identities=7%  Similarity=-0.027  Sum_probs=99.3

Q ss_pred             EEECCCCCEEEEEeCC--------------CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----CCCeEE
Q psy4393          33 VKFSPNGEWLASSSAD--------------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----DDKTLK   94 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~   94 (247)
                      --++++|.+|+.+...              ..|+..+....+.. .+...  .  ...|+++++.|+-..    ....|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3467888888766543              35666666554432 23221  1  235777888887665    334565


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      ..++.... ...+..+..    ..++++++.|+..+. ...|.+.++..+.....+.   +... ..+.|++.+|+-...
T Consensus       133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence            56665433 333433322    345677777775554 5678888887665433332   2222 235688888876554


Q ss_pred             C--CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc--CCeEEEEECCCcc
Q psy4393         174 D--GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL--DNTLKLWDSKVVT  229 (247)
Q Consensus       174 d--g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~  229 (247)
                      .  ..|..-++.... ...+..   ..+  ..|+|++++|+.++.  .+.|..-+++...
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            3  366666766544 222221   122  347778888876532  3566666665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.01  E-value=0.085  Score=41.57  Aligned_cols=183  Identities=13%  Similarity=0.127  Sum_probs=94.8

Q ss_pred             CCCeEEEEECCC---CCEEEEEeC-C-----CeEEEEecCCCeE---EEEEecc------cCCeEEEEECCCCCEEEEEc
Q psy4393          27 TKAVSSVKFSPN---GEWLASSSA-D-----KLIKIWGAYDGKF---EKTISGH------KLGISDVAWSSDSRLLVSGS   88 (247)
Q Consensus        27 ~~~v~~~~~s~~---~~~l~~~~~-d-----g~v~iw~~~~~~~---~~~~~~~------~~~v~~~~~~~~~~~l~~~~   88 (247)
                      ......++|+|+   +..|+.+.. .     +.|..++......   ...+...      ......++|.|+|.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            356789999998   555554433 2     5677777654321   1112111      11235789999998776653


Q ss_pred             CC-------------CeEEEEECCCc------------eEEEEE-ecCCccEEEEEEcC-CCCEEEEeeCCCC-------
Q psy4393          89 DD-------------KTLKIWELSSG------------KCLKTL-KGHSNYVFCCNFNP-QSNLIVSGSFDES-------  134 (247)
Q Consensus        89 ~d-------------~~i~v~d~~~~------------~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~-------  134 (247)
                      ..             +.|.-++....            .....+ .++. ....++|+| ++.++++-.....       
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence            21             45555555420            000111 1222 245678999 6676665433332       


Q ss_pred             -EEEEECCCCe------------------EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee------ee
Q psy4393         135 -VRIWDVRTGK------------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC------LK  189 (247)
Q Consensus       135 -i~v~d~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~  189 (247)
                       |.+.  ..+.                  ++..+..+ .....++| .+|.++++....+.|...++.....      ..
T Consensus       233 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~  308 (352)
T 2ism_A          233 EVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE  308 (352)
T ss_dssp             EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence             3332  2221                  11122112 23456666 4566666666667777777653321      12


Q ss_pred             eeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         190 TLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      .+.. ....+..+++.|||.++++..
T Consensus       309 ~~~~-~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          309 TALS-GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEE-SSCCEEEEEECTTSCEEEEEC
T ss_pred             eecc-cCCCeeEEEECCCCcEEEEEe
Confidence            2222 234578899999998766654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.92  E-value=0.041  Score=43.25  Aligned_cols=141  Identities=12%  Similarity=-0.060  Sum_probs=63.3

Q ss_pred             CeEEEEECCCceEEEEEecCCc-cE-EEEEEcCCCCEEEEeeC------CCCEEEEEC--CCCeE--EEeecCCCCCeEE
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSN-YV-FCCNFNPQSNLIVSGSF------DESVRIWDV--RTGKC--LKTLPAHSDPVSA  158 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~~------d~~i~v~d~--~~~~~--~~~~~~~~~~i~~  158 (247)
                      ..+.+||..+.+-...-..... .- .++.. -++.+++.|+.      ...+..||+  .+.+-  +..+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4788999987653322111111 11 12222 24566777664      235777876  33321  1111111111111


Q ss_pred             EEECCCCCEEEEecCC----------------------CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc
Q psy4393         159 VHFNRDGSLIVSSSYD----------------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  216 (247)
                      .+...++.+++.|+.+                      ..+.+||+.+.+....-.... ......+...++++++.|+.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-CCBSSEEEEETTEEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-CcccceeEEeCCEEEEEeee
Confidence            1122356677777632                      246789988765432211111 11111122346778888885


Q ss_pred             CC------eEEEEECCCcceEEE
Q psy4393         217 DN------TLKLWDSKVVTPAII  233 (247)
Q Consensus       217 dg------~i~vwd~~~~~~~~~  233 (247)
                      ++      .+.+++.++++.+..
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             CCCCCEeeeEEEEEEcCcEeEee
Confidence            42      455667777765543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.12  Score=41.64  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc---cC-CeEEEEECCCCCEEEEEcCCCeEEEEECCCce---------
Q psy4393          36 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KL-GISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---------  102 (247)
Q Consensus        36 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------  102 (247)
                      ..+|..++.+ .++.||.-++.....-+.+...   .. .+..+..+|+|+++|..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3456666554 3567777776533323333332   22 577899999999998875 5578888876321         


Q ss_pred             ---EEEEEec------CCccEEEEEEcCC---CCEEEEeeCCCCEEEEECCCCe--EEEeec---------CCCCCeEEE
Q psy4393         103 ---CLKTLKG------HSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGK--CLKTLP---------AHSDPVSAV  159 (247)
Q Consensus       103 ---~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---------~~~~~i~~~  159 (247)
                         ..+.+.-      ....|..+.|+|-   +..+++-..|+.|++||+....  +. .+.         .....+.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1122221      2466999999994   4678888999999999997521  11 221         122468899


Q ss_pred             EECCCCCEEEE--ecCCCeEEEEe
Q psy4393         160 HFNRDGSLIVS--SSYDGLCRIWD  181 (247)
Q Consensus       160 ~~~~~~~~l~~--~~~dg~i~v~d  181 (247)
                      +|..++-.|+.  .+..|.|+...
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEcCCCcEEEEEecCCCCCEEEEC
Confidence            99998876666  44788876553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.89  E-value=0.096  Score=40.33  Aligned_cols=180  Identities=11%  Similarity=0.064  Sum_probs=91.5

Q ss_pred             EEEEeCCCeEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcC-----C------CeEEEEECCCceEEEEEec
Q psy4393          42 LASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSD-----D------KTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~v~d~~~~~~~~~~~~  109 (247)
                      ++.|+  ..+..||..+.+.... +.........-....++..++.|+.     .      ..+..||..+.+-.. +..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence            34454  5788999888775431 1111112222233456777777773     1      127788988765322 211


Q ss_pred             CC-ccE-EEEEEcCCCCEEEEeeCC--------CCEEEEECCCCeEEE--eecCCCCCeEEEEECCCCCEEEEecC-C--
Q psy4393         110 HS-NYV-FCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSY-D--  174 (247)
Q Consensus       110 ~~-~~v-~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d--  174 (247)
                      .. ... .++.. -++.+++.|+.+        ..+.+||+.+.+-..  .+......-..+.  .++++++.|+. +  
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            11 111 01111 255677777642        358899998764221  1111111112222  35667777775 2  


Q ss_pred             ---CeEEEEeCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcCC-----eEEEEECCCcc
Q psy4393         175 ---GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDN-----TLKLWDSKVVT  229 (247)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~  229 (247)
                         ..+.+||+.+.+....-..... ..-..+.  -+++.++.|+.++     .+.+||..+.+
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence               3688999987754332111111 1112222  2567777777654     58888887653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.77  E-value=0.14  Score=40.45  Aligned_cols=153  Identities=13%  Similarity=0.203  Sum_probs=88.4

Q ss_pred             CCeEEEEECCCCCEEEEE------------cCCCeEEEEECCCc--eEE-EEEec-----CCccEEEEEEcC--CCC--E
Q psy4393          70 LGISDVAWSSDSRLLVSG------------SDDKTLKIWELSSG--KCL-KTLKG-----HSNYVFCCNFNP--QSN--L  125 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~------------~~d~~i~v~d~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~--~  125 (247)
                      .+..++...|+|..++++            ..+|.|.++|.++.  +.. ..+.+     .......+.+.+  ++.  +
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            456777888877655554            26899999998742  211 12222     123455666644  343  3


Q ss_pred             EEEeeC--CCCEEEEECCCC--e--EEEeecCC-CCCeEEEEECCCCCEEEEecC-----------------CCeEEEEe
Q psy4393         126 IVSGSF--DESVRIWDVRTG--K--CLKTLPAH-SDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWD  181 (247)
Q Consensus       126 l~~~~~--d~~i~v~d~~~~--~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~v~d  181 (247)
                      +++-..  +..+.+|++..+  .  .+..+... -...+.+.+.++|.++++...                 .|.+.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            333222  456777766543  2  12223221 235688999999987776541                 24555555


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      ..  +. ..+. ..-..-+.++|+||++.|+.+. ..++|..||.+
T Consensus       210 ~~--~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          210 PN--DV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             TT--CC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CC--eE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            53  21 1111 1112347899999999888776 46899999976

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.74  E-value=0.048  Score=43.04  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE-------ecccCCeEEEEECCC---CCEEEEE-cC------
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSD---SRLLVSG-SD------   89 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~-~~------   89 (247)
                      -.....++|.|+|++|+.+...|.|++++. ++.....+       .........++++|+   +..|..+ ..      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            446689999999993444567899998875 33321111       112345788999996   4444433 22      


Q ss_pred             -CCeEEEEECCCc--e--EEEE-EecC------CccEEEEEEcCCCCEEEEee
Q psy4393          90 -DKTLKIWELSSG--K--CLKT-LKGH------SNYVFCCNFNPQSNLIVSGS  130 (247)
Q Consensus        90 -d~~i~v~d~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~l~~~~  130 (247)
                       ...|..++....  .  .... +...      ...-..+.|.|+|.+.++.+
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence             234656665432  1  1111 1111      11134689999997666643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.67  E-value=0.13  Score=44.48  Aligned_cols=192  Identities=11%  Similarity=0.082  Sum_probs=100.8

Q ss_pred             CCCCEEEEEeCC----CeEEEEecCCCeEEEEE-e------cccCCeEEEEECC-CCCEEEEEcCC------CeEEEEEC
Q psy4393          37 PNGEWLASSSAD----KLIKIWGAYDGKFEKTI-S------GHKLGISDVAWSS-DSRLLVSGSDD------KTLKIWEL   98 (247)
Q Consensus        37 ~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~   98 (247)
                      .++..++.|+.+    ..+.+||..+......- .      .....-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456666667643    45788888776554433 1      1111122333333 66777777643      25788998


Q ss_pred             CCceEEEEEecCCcc-EEEEEEcCCCCEEEEeeCCC--CEEEEECCCCeEEEee-----cCCCCCeEEEEECCC-CCEEE
Q psy4393          99 SSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDE--SVRIWDVRTGKCLKTL-----PAHSDPVSAVHFNRD-GSLIV  169 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~l~  169 (247)
                      .+......-...... -.++..-.++.+++.|+.++  .+.+||..+.+-...-     ......-.++.+..+ +.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            876533211111111 11223324778888887655  6899999876522211     111111233455544 66777


Q ss_pred             EecC--C-----CeEEEEeCCCcee-----eeeecc---CCCCCeEEEEECCCCCEEEEEEc--------CCeEEEEECC
Q psy4393         170 SSSY--D-----GLCRIWDTASGQC-----LKTLID---DDNPPVSFVKFSPNGKYILAATL--------DNTLKLWDSK  226 (247)
Q Consensus       170 ~~~~--d-----g~i~v~d~~~~~~-----~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~vwd~~  226 (247)
                      .|+.  +     ..+.+||+.+.+.     ...+..   .....-. +....+++.++.|+.        ...+.+||..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     3588999887761     111111   1111112 223333677777774        3468999987


Q ss_pred             Ccc
Q psy4393         227 VVT  229 (247)
Q Consensus       227 ~~~  229 (247)
                      +.+
T Consensus       635 t~~  637 (695)
T 2zwa_A          635 SET  637 (695)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.60  E-value=0.23  Score=40.67  Aligned_cols=111  Identities=9%  Similarity=0.093  Sum_probs=62.3

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--ec------ccCCeEEEEECCC---CCEEEEEc-
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SG------HKLGISDVAWSSD---SRLLVSGS-   88 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~------~~~~v~~~~~~~~---~~~l~~~~-   88 (247)
                      ..+...-.....++|.|+|+++++-...+.|++++..++......  ..      .......++|+|+   +..|..+. 
T Consensus        20 ~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            334333456779999999997776433346888876555433221  11      2345779999995   44444332 


Q ss_pred             C------------CCeEEEEECCCc--e-----EEE-EEec-CCccEEEEEEcCCCCEEEEeeC
Q psy4393          89 D------------DKTLKIWELSSG--K-----CLK-TLKG-HSNYVFCCNFNPQSNLIVSGSF  131 (247)
Q Consensus        89 ~------------d~~i~v~d~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~  131 (247)
                      .            ...|.-++....  .     .+. .+.. .......+.|.|+|.+.++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            1            124555554321  1     111 1111 1123577899999998777543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.45  E-value=0.23  Score=39.11  Aligned_cols=184  Identities=11%  Similarity=0.118  Sum_probs=98.5

Q ss_pred             CCeEEEEECCC---CCEEEEEeC----C----CeEEEEecCCC--e---EEEE---Eec-ccCCeEEEEECCCCCEEEEE
Q psy4393          28 KAVSSVKFSPN---GEWLASSSA----D----KLIKIWGAYDG--K---FEKT---ISG-HKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        28 ~~v~~~~~s~~---~~~l~~~~~----d----g~v~iw~~~~~--~---~~~~---~~~-~~~~v~~~~~~~~~~~l~~~   87 (247)
                      .....++|+|+   +..|+.+..    +    ..|..|+....  .   ....   +.. .......++|.|||.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            56789999997   455544332    2    46666765443  1   1111   211 11124568999999877765


Q ss_pred             cC-------------CCeEEEEECCCc---------eEEEEEecCCccEEEEEEcC-CCCEEEEeeCCC---CEEEEECC
Q psy4393          88 SD-------------DKTLKIWELSSG---------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE---SVRIWDVR  141 (247)
Q Consensus        88 ~~-------------d~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~---~i~v~d~~  141 (247)
                      +.             .+.|.-++....         ..+. ..++.. ...++|+| ++.++++-....   .|.+..  
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--  228 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--  228 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence            43             245555554321         0111 122222 34688999 677666543322   233332  


Q ss_pred             CCe------------------EEEeecCCCCCeEEEEEC-------CCCCEEEEecCCCeEEEEeCCCc-eee--eeecc
Q psy4393         142 TGK------------------CLKTLPAHSDPVSAVHFN-------RDGSLIVSSSYDGLCRIWDTASG-QCL--KTLID  193 (247)
Q Consensus       142 ~~~------------------~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~~~  193 (247)
                      .+.                  ++..+.........+.+.       .+|.++++....+.|...++... +..  ..+..
T Consensus       229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred             CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence            111                  112221112346677773       46777776666778888887753 221  23332


Q ss_pred             CCCCCeEEEEECCCCCEEEEEE
Q psy4393         194 DDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       194 ~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      .....+..+++.|||.+.++..
T Consensus       309 ~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCeeEEEECCCCcEEEEEe
Confidence            2234678899999997666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.40  E-value=0.25  Score=38.91  Aligned_cols=199  Identities=13%  Similarity=0.104  Sum_probs=104.8

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe------cccCCeEEEEECCC---CCEEEEEcC----
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSD---SRLLVSGSD----   89 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~----   89 (247)
                      +...-.....++|.|+|++++ +..+|.|++++. ++.  ..+.      ........++++|+   +..|..+..    
T Consensus        24 va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           24 VASDLEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             EECSCSCEEEEEEEETTEEEE-EETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             EeCCCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            333345678999999998555 466799998873 444  2221      12345789999997   444444322    


Q ss_pred             C----CeEEEEECCCc--e-----EE-EEEecC-CccEEEEEEcCCCCEEEEeeCC-------------CCEEEEECCCC
Q psy4393          90 D----KTLKIWELSSG--K-----CL-KTLKGH-SNYVFCCNFNPQSNLIVSGSFD-------------ESVRIWDVRTG  143 (247)
Q Consensus        90 d----~~i~v~d~~~~--~-----~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~  143 (247)
                      +    ..|..++....  .     .+ ..+... ......+.|.|+|.+.++.+..             |.|.-++....
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence            2    56777776543  1     11 112211 1123457899999877764432             34444444321


Q ss_pred             ---------eEEEeecCCCCCeEEEEECC-CCCEEEEecCCC---eEEEEeCCCc----------------eeeeeeccC
Q psy4393         144 ---------KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG---LCRIWDTASG----------------QCLKTLIDD  194 (247)
Q Consensus       144 ---------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~v~d~~~~----------------~~~~~~~~~  194 (247)
                               ..+.. ..+.. ...++|+| ++.++++-....   .|.+......                .....+ ..
T Consensus       180 ~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~  256 (354)
T 3a9g_A          180 PPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT-GS  256 (354)
T ss_dssp             CCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT
T ss_pred             CCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec-CC
Confidence                     01111 12222 34688999 676555433221   2433322110                001111 01


Q ss_pred             CCCCeEEEEEC-------CCCCEEEEEEcCCeEEEEECCCc
Q psy4393         195 DNPPVSFVKFS-------PNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       195 ~~~~v~~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .......++|.       .+|.++++.-..++|...+.+..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            12345667773       56766666666778888887643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.39  E-value=0.23  Score=38.26  Aligned_cols=174  Identities=12%  Similarity=0.095  Sum_probs=86.0

Q ss_pred             eEEEEecCCCeEEEE-EecccCCeEEEEECCCCCEEEEEcC----CC-------eEEEEECCCceEEEE--EecCCccEE
Q psy4393          50 LIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSD----DK-------TLKIWELSSGKCLKT--LKGHSNYVF  115 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~v~d~~~~~~~~~--~~~~~~~v~  115 (247)
                      .+..||..+.+.... ..........-....++..++.|+.    ++       .+..||..+.+....  +......-.
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            378888887765442 1111112222223456777777773    11       277888877654321  111111111


Q ss_pred             EEEEcCCCCEEEEeeCC-------CCEEEEECCCCeEEEeecCCCCCe--EEEEECCCCCEEEEecCC------CeEEEE
Q psy4393         116 CCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLKTLPAHSDPV--SAVHFNRDGSLIVSSSYD------GLCRIW  180 (247)
Q Consensus       116 ~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d------g~i~v~  180 (247)
                      .+.+  ++.+++.|+.+       ..+.+||+.+.+-.. +.....+.  .++.. .++.+++.|+.+      ..+.+|
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence            1222  46677777754       247788988765322 11111111  11222 356677777642      358899


Q ss_pred             eCCCceeeeeeccCCC-CCeEEEEECCCCCEEEEEEcC-----CeEEEEECCCcc
Q psy4393         181 DTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDSKVVT  229 (247)
Q Consensus       181 d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~  229 (247)
                      |+.+.+....-..... .....+.  -+++.++.|+.+     ..+.+||..+.+
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          181 NPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            9988764332111111 1112222  256777777643     357788876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.18  E-value=0.3  Score=37.57  Aligned_cols=175  Identities=11%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             CCCCCEEEEEe--CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC--------------CeEEEEECC
Q psy4393          36 SPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD--------------KTLKIWELS   99 (247)
Q Consensus        36 s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~   99 (247)
                      +++|.+|+...  .++.|...+..... ...+....  +  --++++++.|+-+...              ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~~--~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSNDT--A--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEEE--E--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCCc--e--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            45677766553  24556666653333 33333221  2  2356788888766442              357777776


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEee----CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecC-C
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS----FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-D  174 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d  174 (247)
                      .++... +....    ...++++++.|+...    ....|+..++.... ...+..+..    ..++++++.|+-.+. .
T Consensus        97 g~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           97 GHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             SCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred             CCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence            655332 32222    235677888888765    23456666665333 333333322    346778887776554 5


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC--CeEEEEECCCcce
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLKLWDSKVVTP  230 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~  230 (247)
                      .+|.+.++..+... .+...   ... ..++|++.+|+-...+  ..|..-+++....
T Consensus       167 ~~Iy~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~  219 (302)
T 3s25_A          167 GQLYRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP  219 (302)
T ss_dssp             CCEEEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred             ceEEEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence            68888888766533 33221   222 3456999998877654  3566666655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.14  E-value=0.43  Score=39.03  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE--EEec------CCccEEEEEEcCC---CCEEEEeeC------
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK--TLKG------HSNYVFCCNFNPQ---SNLIVSGSF------  131 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~l~~~~~------  131 (247)
                      -.....|+|.|+|+++++....+.|.+++..++....  .+..      .......++++|+   +..|+....      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3456789999999977776555578888765554322  2211      1344668999995   455544432      


Q ss_pred             -------CCCEEEEECCCC-------eEEE-eecC-CCCCeEEEEECCCCCEEEEec
Q psy4393         132 -------DESVRIWDVRTG-------KCLK-TLPA-HSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       132 -------d~~i~v~d~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~  172 (247)
                             ...|.-+++..+       +.+. .+.. .......|.|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   124555554321       1111 1221 123468899999998777644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.63  E-value=0.41  Score=44.74  Aligned_cols=193  Identities=12%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEEEEecC-
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH-  110 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~-  110 (247)
                      ...+|..+.+|.- ....++|+++++........- ...|.-=.|-.+.. |+-. .+..|.-|++.. ..+++.+..| 
T Consensus        71 AIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEe-cCCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence            4566777766653 367899999987655544432 22454445654433 3333 245789999964 2333333322 


Q ss_pred             ---CccEEEEEEcCCCCEEEEee-------CCCCEEEEECCCCeEEEeecCCCCCeEEEEEC--CC-CCEEEEec---CC
Q psy4393         111 ---SNYVFCCNFNPQSNLIVSGS-------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN--RD-GSLIVSSS---YD  174 (247)
Q Consensus       111 ---~~~v~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~d  174 (247)
                         ...|.....+++.++++..|       -.|.+.+|....+. .+.+.+|.+....+...  +. ..+++.+.   ..
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               23455666788888776543       24678888776432 23344554433322221  11 12222221   13


Q ss_pred             CeEEEEeCCCc---ee------eeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         175 GLCRIWDTASG---QC------LKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       175 g~i~v~d~~~~---~~------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      +.+++.++...   ..      ...++.+   ...|| .+..++....+...+.-|.|.+||..+++++
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence            68888887543   10      0111111   12233 4677888888999999999999999887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.41  E-value=0.73  Score=36.21  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE------ecccCCeEEEEECCC----CCEEEEE--cC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI------SGHKLGISDVAWSSD----SRLLVSG--SD   89 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~----~~~l~~~--~~   89 (247)
                      .+...-.....++|.|+|+++++-...|.|++++..++......      .........++++|+    +.+.++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            34445567789999999997776544899999876555432211      122456789999995    4333332  23


Q ss_pred             CCeEEEEECCCc----------eEE-EEEec-CCccEEEEEEcCCCCEEEEee
Q psy4393          90 DKTLKIWELSSG----------KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGS  130 (247)
Q Consensus        90 d~~i~v~d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  130 (247)
                      +..|.-|....+          +.+ ..+.. ....-..+.|.|+|.+.++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            445555655431          111 11211 111234578999998877754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.38  E-value=0.26  Score=38.62  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             CCCEEEEEeC-CCeEEEEecCC--CeEEEEEecc---cCCeEEEEECCCCCEEEEEcC-C---------CeEEEEECCCc
Q psy4393          38 NGEWLASSSA-DKLIKIWGAYD--GKFEKTISGH---KLGISDVAWSSDSRLLVSGSD-D---------KTLKIWELSSG  101 (247)
Q Consensus        38 ~~~~l~~~~~-dg~v~iw~~~~--~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d---------~~i~v~d~~~~  101 (247)
                      ++..++.|+. ...+.+||...  .+....-.-.   ........+  +++.++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5565566654 34688888763  3322111111   111122222  4566666665 2         35888998876


Q ss_pred             eEEEEEecC-CccEEEEEEcCCCCEEEEeeCC
Q psy4393         102 KCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFD  132 (247)
Q Consensus       102 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d  132 (247)
                      +-...-... ...........++.+++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            533211111 1111111122456777888754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.35  E-value=0.9  Score=36.93  Aligned_cols=196  Identities=13%  Similarity=0.208  Sum_probs=121.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC-ceEEEEEecC
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH  110 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~  110 (247)
                      +...+|..+.+|.-. ...++++|+++........-.. .|.-=.|-.+ +.|+-. .+..|+-|++.. ..+++.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence            456788888776643 6799999999887776665433 4544455443 334333 346799999964 3455555544


Q ss_pred             C----ccEEEEEEcCCCCEEEEeeC-------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC---CEEEEecC---
Q psy4393         111 S----NYVFCCNFNPQSNLIVSGSF-------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSY---  173 (247)
Q Consensus       111 ~----~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~---  173 (247)
                      .    ..|.....+++.++++..+-       .|.+.+|....+. .+.+.+|......+....+.   .+++.+..   
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            2    35666777888888775432       3568888876543 34566665544444333211   23333332   


Q ss_pred             CCeEEEEeCCCc---------eeeeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         174 DGLCRIWDTASG---------QCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       174 dg~i~v~d~~~~---------~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .+.+++.++...         +....++..   ...|| .+..++....++.-+.-|.|++||..++.++..
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            368888887542         111111211   22344 477888888999999999999999999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.089  Score=41.23  Aligned_cols=114  Identities=8%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             CEEEEeeCCCCEEEEECCCCeEEEeecCC-CCCeEEEEEC--C-CCCEEEEe-cCCCeEEEEeCCCceeeeeeccC---C
Q psy4393         124 NLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFN--R-DGSLIVSS-SYDGLCRIWDTASGQCLKTLIDD---D  195 (247)
Q Consensus       124 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~---~  195 (247)
                      .+++.++.||.|+-+|..+|+....++.. ..+.....-.  + ++..++.. +.||.+..++..++...-.+...   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888899999999999999988887653 1222221100  1 23344443 58999999998887543222111   1


Q ss_pred             CCCeEE---EEE-CC----CCCEEEEEEcCCeEEEEECCCcceEEEEccC
Q psy4393         196 NPPVSF---VKF-SP----NGKYILAATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       196 ~~~v~~---~~~-s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      ..++..   ... .+    .+..+++|+.+|++...|.++++.+-.+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            223321   001 01    4567889999999999999999988877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.00  E-value=1.7  Score=37.97  Aligned_cols=190  Identities=15%  Similarity=0.179  Sum_probs=107.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      ..|.++.-..+|. |..|+.+| +..||..+.............|.++.. .++ .|..++.+ -+..+|..+++.. .+
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF  136 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence            3577777776664 44455554 778887665432211111224666643 344 45455555 5778898765543 22


Q ss_pred             e-----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe-ecCC----CCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         108 K-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAH----SDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       108 ~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      .     .....|.++....++.+.+. +.+ -+..+|..+++.... ....    ...|.++...+++..|-.|+. +-+
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl  213 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL  213 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence            1     12345778877878877663 443 477888876653221 1111    224788888777664444543 457


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ..+|..+++.... .......|.++..+.+|.+.+. +. +-+.+++.+...
T Consensus       214 ~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          214 FQYFPSTGQIKQT-EAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTP  262 (758)
T ss_dssp             EEEETTTTEEEEE-EEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSC
T ss_pred             eEEcCCCCeEEec-cCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCc
Confidence            7888877653221 1111234777888888775554 43 457888876543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.27  E-value=1.5  Score=34.36  Aligned_cols=67  Identities=15%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             CeEEEEECC-------CCCEEEEecCCCeEEEEeCCCceeee--eeccCCCCCeEEEEECCCCCEEEEEE-cCCeEE
Q psy4393         155 PVSAVHFNR-------DGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLK  221 (247)
Q Consensus       155 ~i~~~~~~~-------~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  221 (247)
                      ....+.+..       ++.++++....+.|...++..++...  .+.......+..+++.|||.+.++.. .+|+|.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence            355667653       46667666667788777776554322  22222234678899999998666543 345443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.12  E-value=2  Score=35.03  Aligned_cols=158  Identities=10%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             CCCeEEEEECCCCCEEEEEe-------CCCeEEEEecCCCeEEEEEecccCCeEEEEECCC---CCEEEEEcC---CCeE
Q psy4393          27 TKAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSD---DKTL   93 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i   93 (247)
                      ...|..-.-+++.++++..+       ..|.+++|..+.+ ..+.+.+|-.....+...-+   .+.++.+..   .+.+
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence            35677888899999876543       2367888987554 44566676554443333211   123444433   2688


Q ss_pred             EEEECCCc---e-----EEEEEe----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEE
Q psy4393          94 KIWELSSG---K-----CLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (247)
Q Consensus        94 ~v~d~~~~---~-----~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~  161 (247)
                      ++-++...   .     ....+.    ...+.-.++..++....++.-+.-|.+++||+.++.++..-+....+|..-+.
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence            99888532   1     111111    11233456788888889999999999999999999998887766677766555


Q ss_pred             CCCCCEEEEecCCCeEEEEeCCCc
Q psy4393         162 NRDGSLIVSSSYDGLCRIWDTASG  185 (247)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~  185 (247)
                      +....-++....+|+|.-..+...
T Consensus       309 ~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          309 HEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             ETTTTEEEEEETTCEEEEEEECTT
T ss_pred             cCCCCcEEEEccCceEEEEEEccc
Confidence            555444555557777665555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.08  E-value=2.4  Score=36.71  Aligned_cols=150  Identities=9%  Similarity=0.084  Sum_probs=80.9

Q ss_pred             CCCCEEEEEcCC----CeEEEEECCCceEEEEE-e-----cCC--ccEEEEEEcCCCCEEEEeeCCC------CEEEEEC
Q psy4393          79 SDSRLLVSGSDD----KTLKIWELSSGKCLKTL-K-----GHS--NYVFCCNFNPQSNLIVSGSFDE------SVRIWDV  140 (247)
Q Consensus        79 ~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~-~-----~~~--~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~  140 (247)
                      .++..++.|+.+    ..+.+||..+.+....- .     ...  ..-..+.+..++.+++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            355666666643    35778888876543222 1     011  1112222322677888887543      4788998


Q ss_pred             CCCeEEE--eecCCCCCeEEEEECCCCCEEEEecCCC--eEEEEeCCCceeeeeec----cCCCCCeEEEEECCC-CCEE
Q psy4393         141 RTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPN-GKYI  211 (247)
Q Consensus       141 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~s~~-~~~l  211 (247)
                      .+.+-..  .+...... .+++...++.+++.|+.++  .+.+||..+.+....-.    ......-..+.+..+ ++.+
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8754221  11111111 2233324778888887655  68999998876443221    001111122445555 6677


Q ss_pred             EEEEc--C-----CeEEEEECCCcc
Q psy4393         212 LAATL--D-----NTLKLWDSKVVT  229 (247)
Q Consensus       212 ~~~~~--d-----g~i~vwd~~~~~  229 (247)
                      +.|+.  +     +.+.+||..+..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCc
Confidence            77765  2     468899987665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.05  E-value=1.7  Score=34.10  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=62.9

Q ss_pred             EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE--EEee----cCCCCCeEEEEECCC---CCEEEEe---cCC
Q psy4393         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTL----PAHSDPVSAVHFNRD---GSLIVSS---SYD  174 (247)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~----~~~~~~i~~~~~~~~---~~~l~~~---~~d  174 (247)
                      +...-..-+.++|.|++.++++-...|.|++++...++.  +..+    .........|+++|+   +..|++.   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333344567899999999888766589999998765543  2222    122456789999995   3344432   234


Q ss_pred             CeEEEEeCCCc----------eeee-eeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         175 GLCRIWDTASG----------QCLK-TLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       175 g~i~v~d~~~~----------~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      +.|.-|....+          +.+. .+..........|.|.|||.+.++.+
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            45655654431          1111 11111111234589999998666644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.88  E-value=0.85  Score=38.26  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             eEEEEECCCCCEEEEEcC-CCeEEEEECCCce-------------EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEE
Q psy4393          72 ISDVAWSSDSRLLVSGSD-DKTLKIWELSSGK-------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  137 (247)
Q Consensus        72 v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v  137 (247)
                      ...+..+|||+++++++. +.++.++|++.-.             ......... .-...+|+++|+...+-.-|..|..
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEE
Confidence            456788999999876654 7799999987421             122222222 2457789999965555668899999


Q ss_pred             EECCCC----------eEEEeecCCCCCeEEEE-----ECCCCCEEEEec
Q psy4393         138 WDVRTG----------KCLKTLPAHSDPVSAVH-----FNRDGSLIVSSS  172 (247)
Q Consensus       138 ~d~~~~----------~~~~~~~~~~~~i~~~~-----~~~~~~~l~~~~  172 (247)
                      |++...          ..+..+..|-.+-.-.+     -.|+|++|++..
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            998642          23444555543322111     146788887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.33  E-value=4  Score=38.51  Aligned_cols=156  Identities=11%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             CCeEEEEECCCCCEEEEEe-------CCCeEEEEecCCCeEEEEEecccCCeEEEEEC--C-CCCEEEEEcC---CCeEE
Q psy4393          28 KAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--S-DSRLLVSGSD---DKTLK   94 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---d~~i~   94 (247)
                      ..|..-.-+++.++++..|       ..|.+.+|..+.+ ..+.+.||-.....+...  + ....++.+..   .+.++
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            5677788889999876433       3478888887543 334455554443333221  1 1223332222   26888


Q ss_pred             EEECCCc---e--EEE----EEe---cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393          95 IWELSSG---K--CLK----TLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        95 v~d~~~~---~--~~~----~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  162 (247)
                      +-++...   .  ..+    .+.   ...+.-.++..++....++..+.-|.++++|+.++.++..-+....+|...+.+
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            8887542   1  100    000   011223457778888888888999999999999999877655545555544444


Q ss_pred             CCCCEEEEecCCCeEEEEeCCC
Q psy4393         163 RDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      ....-++.....|+|.-..+..
T Consensus       310 ~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          310 EATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             CCCCceEEEcCCceEEEEEEcc
Confidence            3322333344556554444433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.90  E-value=7.8  Score=35.83  Aligned_cols=204  Identities=11%  Similarity=0.050  Sum_probs=107.8

Q ss_pred             cCCCCeEEEEECCC----CCEEEEEe---CCCeEEEEecCCC-eEEEEEec-ccCCeEEEEEC---CCCCEEEEEcCCCe
Q psy4393          25 GHTKAVSSVKFSPN----GEWLASSS---ADKLIKIWGAYDG-KFEKTISG-HKLGISDVAWS---SDSRLLVSGSDDKT   92 (247)
Q Consensus        25 ~h~~~v~~~~~s~~----~~~l~~~~---~dg~v~iw~~~~~-~~~~~~~~-~~~~v~~~~~~---~~~~~l~~~~~d~~   92 (247)
                      ..-++|..++....    ...|++++   .+|.+++...--+ +....+.- .-..++.+...   ....+|+.+..+.+
T Consensus       372 ~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T  451 (1158)
T 3ei3_A          372 TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT  451 (1158)
T ss_dssp             CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE
T ss_pred             cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe
Confidence            45678888887432    12444432   5678888753211 11112211 11223333322   12456666655555


Q ss_pred             EEEEECCCceEEEEEec-----CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCC-CCeEEEEECCCCC
Q psy4393          93 LKIWELSSGKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGS  166 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~  166 (247)
                       .++.+... .+..+..     ....+.+..+ + +..++-... ..|++.+......+..+.... ..|...+.+.  .
T Consensus       452 -~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~-~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~  524 (1158)
T 3ei3_A          452 -RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-A-HQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--S  524 (1158)
T ss_dssp             -EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-T-TTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--S
T ss_pred             -EEEEEeCC-cccccccccccCCCCcEEEEEc-C-CCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--C
Confidence             45554221 2222211     1112222222 2 234444433 357788876555566665433 3566656543  4


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCC------CCEEEEEEc-CCeEEEEECCCcceEEEEcc
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN------GKYILAATL-DNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~  236 (247)
                      .++.+. ++.+.++.+..++........-...|.++++.|.      +++++.|.. |++++|+++.+.+++-....
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L  600 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML  600 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence            555554 6778888776544222111122346899998864      469999996 99999999998777655554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.51  E-value=6.2  Score=32.30  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=58.9

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCe---EEEEEe---------cccCCeEEEEECCC----CCEEEEEcC-
Q psy4393          28 KAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK---FEKTIS---------GHKLGISDVAWSSD----SRLLVSGSD-   89 (247)
Q Consensus        28 ~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~-   89 (247)
                      ..-..++|.|+|. .|+.+...|.|++++.....   ....+.         ........++|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4557899999996 45556788999999753221   111111         01356788999996    444443221 


Q ss_pred             -C----------CeEEEEECCC----------ceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCC
Q psy4393          90 -D----------KTLKIWELSS----------GKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFD  132 (247)
Q Consensus        90 -d----------~~i~v~d~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  132 (247)
                       +          ..|.-|.+..          .+.+..+.  ...-.-..+.|.|+|.+.++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          1344455432          12222222  111235678999999887776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.62  E-value=13  Score=32.23  Aligned_cols=192  Identities=10%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      .|.++...+++..|..|+. +-+..++..++............|.++...++|.+.+.. .+ -+.+++..++.......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEEEc
Confidence            3778877777665555553 457778876655432211123357888888888766544 44 57778877654322111


Q ss_pred             c-------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-----cCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393         109 G-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus       109 ~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      .       ....|.++..+.++.+.+. +..| +.++.....-.....     ......|.++.-+.+|.+.+. +.+| 
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-  344 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-  344 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-
Confidence            1       1235888888888876654 3445 544432211111111     012345888888888886654 3455 


Q ss_pred             EEEEeCCCcee--eeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         177 CRIWDTASGQC--LKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       177 i~v~d~~~~~~--~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      +..++..+++.  ...+..      .....|.++.-+.+|++-+ |+ ++-|..||.++..
T Consensus       345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~  403 (758)
T 3ott_A          345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQ  403 (758)
T ss_dssp             EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred             ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence            55666554321  111111      0123478888888877544 44 4678889987653

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.59  E-value=4.3  Score=34.40  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             eEEEEECCCCCEEEEecCC------------CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         156 VSAVHFNRDGSLIVSSSYD------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       156 i~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      .-.|.|+|.|.+++.-..+            ..+.+.+..+++..+-+.......++.++|+||++.|...-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            3568999999976654322            24666777777765555555667789999999999887764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=84.34  E-value=8.9  Score=32.35  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             CeEEEEECCCCCEEEEecC------------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         155 PVSAVHFNRDGSLIVSSSY------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       155 ~i~~~~~~~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ....|.|+++|.+.+....            ...+..++..+++....+.......++.++|+||++.|+++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            3567899999997773321            125677777777754433323345679999999999888765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.10  E-value=16  Score=29.88  Aligned_cols=104  Identities=15%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             CCeEEEEECCCCC-EEEEEcCCCeEEEEECCCce---EEEEEe---c------CCccEEEEEEcCC----CCEEEEeeC-
Q psy4393          70 LGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGK---CLKTLK---G------HSNYVFCCNFNPQ----SNLIVSGSF-  131 (247)
Q Consensus        70 ~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~---~~~~~~---~------~~~~v~~~~~~~~----~~~l~~~~~-  131 (247)
                      .....|+|.|+|. .++++...|.|++++.....   .+..+.   .      .......++++|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4467899999986 45566678999999754221   111111   0      1234678999986    333333221 


Q ss_pred             -C----------CCEEEEECCC----------CeEEEeec--CCCCCeEEEEECCCCCEEEEecC
Q psy4393         132 -D----------ESVRIWDVRT----------GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       132 -d----------~~i~v~d~~~----------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                       +          ..|.-|.+..          .+.+..+.  ........|.|.|||.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1333354432          12233222  22234678999999987776554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.21  E-value=31  Score=31.15  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEE
Q psy4393          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  107 (247)
                      .+.++...++..++++-+.|+.+++|++.+++++...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3566777778889999999999999999999887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=80.81  E-value=36  Score=31.57  Aligned_cols=186  Identities=12%  Similarity=0.029  Sum_probs=90.0

Q ss_pred             CCCeEEEEECCC------CCEEEEEeC-CCeEEEEecCCCeEEEEEec-ccCCeEEEEEC--CCCCEEEEEcCCCeEEEE
Q psy4393          27 TKAVSSVKFSPN------GEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWS--SDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        27 ~~~v~~~~~s~~------~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~   96 (247)
                      ...|.|+++.|.      +++++.|.. |+.++|+++.+.+......- ......++.+.  ....++..+-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            468999999864      358888886 99999999976554433221 11223333332  233467888889987655


Q ss_pred             EC--CCceEEE--EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEE-EEECCC--CCEEE
Q psy4393          97 EL--SSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-VHFNRD--GSLIV  169 (247)
Q Consensus        97 d~--~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~~--~~~l~  169 (247)
                      .+  .++...-  ...-...++.-..+...+..-+.+..++..-++--+..-....+..  ..+.. ..|+..  ..-++
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~--~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL--KEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSS--SCCCEEEEECCSSSTTEEE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccCh--HHhceEeccCcccCCCcEE
Confidence            44  3443221  1111122333233333333333333345444444332211222221  12222 234321  22344


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ..+ ++.+++..+...+.......+-......++++|+.+.++.+.
T Consensus       711 ~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          711 LAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             EEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             EEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence            333 445777766432222111111223457788888777655543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=80.24  E-value=18  Score=27.77  Aligned_cols=187  Identities=10%  Similarity=0.066  Sum_probs=98.6

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeE-------EE--EEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC---c---
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKF-------EK--TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS---G---  101 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~---  101 (247)
                      ++...+++.+.+|.|+--....-..       ..  .+. ....+..+........++..+..|.++-+....   .   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            4566777888889888765432211       00  111 122333443444455666677777766554421   1   


Q ss_pred             ---eE---EEEEecCCccEEEEEEcC---CCCEEEEeeCCCCEEEEECCC-------CeEEEeecCCCCCeEEEEECCCC
Q psy4393         102 ---KC---LKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRT-------GKCLKTLPAHSDPVSAVHFNRDG  165 (247)
Q Consensus       102 ---~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~  165 (247)
                         ..   ...+.. ...+..+...+   +...++..+..|.++...+..       |.....+.. .+.+-.+......
T Consensus        85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               00   001222 22343332222   456788889999988887632       222222333 3445444444445


Q ss_pred             CEEEEecCCCeEEEEeCCCce-------eeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         166 SLIVSSSYDGLCRIWDTASGQ-------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ..++..+.+|....+....-.       -.+.+.......+..+..-+++..|++.+..|..+.....
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            567778889988888664311       1111112223445555554556778888999998888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-40
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-40
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-38
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-36
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-32
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-30
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-20
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-22
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-22
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-18
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-18
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-20
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-20
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-18
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-18
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-15
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-13
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	4e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	3e-06
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	2e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.002
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.001
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (349), Expect = 3e-40
 Identities = 79/274 (28%), Positives = 116/274 (42%), Gaps = 63/274 (22%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 74
           P    K+ L+GH   V+ V F P    + S+S D  IK+W    G FE+T+ GH   + D
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 75  V------------------------------------------AWSSDSRLLVSGSDDKT 92
           +                                          +   +   +VS S DKT
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           +K+WE+ +G C+KT  GH  +V     N    LI S S D++VR+W V T +C   L  H
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 153 SDPVSAVHFN--------------------RDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
              V  + +                     + G  ++S S D   ++WD ++G CL TL+
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
             DN  V  V F   GK+IL+   D TL++WD K
Sbjct: 245 GHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  138 bits (348), Expect = 3e-40
 Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 21/210 (10%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK 94
             PNG+ + S+S DK IK+W    G   KT +GH+  +  V  + D  L+ S S+D+T++
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 95  IWELSSGKCLKTLKGHSNYVFCCNFN--------------------PQSNLIVSGSFDES 134
           +W +++ +C   L+ H + V C ++                          ++SGS D++
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
           +++WDV TG CL TL  H + V  V F+  G  I+S + D   R+WD  + +C+KTL   
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 195 DNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ++  V+ + F     Y++  ++D T+K+W+
Sbjct: 289 EH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (337), Expect = 2e-38
 Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 20/181 (11%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--- 77
            T  GH + V  V+ + +G  +AS S D+ +++W     + +  +  H+  +  ++W   
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 78  -----------------SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN 120
                                  L+SGS DKT+K+W++S+G CL TL GH N+V    F+
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
                I+S + D+++R+WD +  +C+KTL AH   V+++ F++    +V+ S D   ++W
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 181 D 181
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 1e-18
 Identities = 23/79 (29%), Positives = 45/79 (56%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
              TL GH   V  V F   G+++ S + DK +++W   + +  KT++ H+  ++ + + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 79  SDSRLLVSGSDDKTLKIWE 97
             +  +V+GS D+T+K+WE
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  127 bits (319), Expect = 9e-36
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 46/262 (17%)

Query: 11  SNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 70
              +     + TL GH   + ++ +  +   L S+S D  + IW +Y       I     
Sbjct: 39  PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98

Query: 71  GISDVAWSSDSRLLVSGSD----------------------------------------- 89
            +   A++     +  G                                           
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 90  ----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
               D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218

Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 205 SPNGKYILAATLDNTLKLWDSK 226
           S +G+ +LA   D    +WD+ 
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (315), Expect = 5e-35
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV 85
           HT  V S+  +P+     S + D   K+W   +G   +T +GH+  I+ + +  +     
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFDESVRIWDVRTG 143
           +GSDD T ++++L + + L T    +    +   +F+    L+++G  D +  +WD    
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
                L  H + VS +    DG  + + S+D   +IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  121 bits (304), Expect = 2e-33
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 48  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107
           D    +W    G+   T +GH   +  ++ + D+RL VSG+ D + K+W++  G C +T 
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            GH + +    F P  N   +GS D + R+            +       +++V F++ G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            L+++   D  C +WD         L   DN  VS +  + +G  +   + D+ LK+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (297), Expect = 2e-32
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVA 76
            + T  GH   ++++ F PNG   A+ S D   +++     +   T S   +  GI+ V+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           +S   RLL++G DD    +W+         L GH N V C         + +GS+D  ++
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 137 IWD 139
           IW+
Sbjct: 338 IWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (287), Expect = 1e-30
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSDSRLLVSG 87
              +G+++A+ S D+ +++W +  G   + +       +GHK  +  V ++ D + +VSG
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 88  SDDKTLKIWELSSGK------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 135
           S D+++K+W L +              C  T  GH ++V           I+SGS D  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVH------FNRDGSLIVSSSYDGLCRIWD 181
             WD ++G  L  L  H + V +V          + ++  + S D   RIW 
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 2e-27
 Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 66/284 (23%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKL------------------ 50
           S++N  P  +   +       + SV FSP+G++LA+ + D+L                  
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162

Query: 51  ------------------------IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS 86
                                   ++IW    G+   T+S      +      D + + +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 87  GSDDKTLKIWELSSGKCLKTLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           GS D+ +++W+  +G  ++ L        GH + V+   F      +VSGS D SV++W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 140 VRTGK------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
           ++               C  T   H D V +V   ++   I+S S D     WD  SG  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 188 LKTLIDDDNPPVS-----FVKFSPNGKYILAATLDNTLKLWDSK 226
           L  L    N  +S          P        + D   ++W  K
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.0 bits (237), Expect = 1e-23
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 28/253 (11%)

Query: 12  NPKPNYVLKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG- 67
           NP     +   L     HT  V  VKFS +GE+LA+   +K  +++   DG     +S  
Sbjct: 44  NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD 102

Query: 68  -----------------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH 110
                              L I  V +S D + L +G++D+ ++IW++ + K +  L+GH
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162

Query: 111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
              ++  ++ P  + +VSGS D +VRIWD+RTG+C  TL       +      DG  I +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNP------PVSFVKFSPNGKYILAATLDNTLKLWD 224
            S D   R+WD+ +G  ++ L  ++         V  V F+ +G+ +++ +LD ++KLW+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 225 SKVVTPAIICSTP 237
            +         TP
Sbjct: 283 LQNANNKSDSKTP 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-26
 Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 46/241 (19%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 80
            L GH   V +      G  + S S D  +K+W A  GK  +T+ GH  G+       + 
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 81  -------------------------------------SRLLVSGSDDKTLKIWELSSGKC 103
                                                 + +VSGS D TL++W++ +G+C
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR 163
           L  L GH   V C  ++     +VSG++D  V++WD  T  CL TL  H++ V ++ F  
Sbjct: 130 LHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 185

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
           DG  +VS S D   R+WD  +G C+ TL    +              +++   D+T+K+W
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIW 242

Query: 224 D 224
           D
Sbjct: 243 D 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 9e-26
 Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 13/193 (6%)

Query: 41  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100
            + S + D ++K+W         T+ GH       +   D   +VSGS D ++++W++ +
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
           G C+ TL GH +           N++VSG+ D +V+IWD++TG+CL+TL   +   SAV 
Sbjct: 207 GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 161 FNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP----PVSFVKFSPNGKYILAAT 215
             + + + +++SS DG  ++WD  +G+ ++ L+  ++      V  ++ S         +
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 216 LDNT----LKLWD 224
            + T    L + D
Sbjct: 325 RNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (229), Expect = 8e-23
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 16  NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 75
                 TL GHT          +G  + S S D  I++W    G    T++GH+   S +
Sbjct: 166 TETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223

Query: 76  AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDES 134
               +  +LVSG+ D T+KIW++ +G+CL+TL+G + +           N +++ S D +
Sbjct: 224 ELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 135 VRIWDVRTGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDGL----CRIWD 181
           V++WD++TG+ ++ L           V  +  +    +    S +G       + D
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 8e-21
 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
           W   + K  K + GH   +           +VSGSDD TLK+W   +GKCL+TL GH+  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 114 VFCCNFNP--------------------------------------QSNLIVSGSFDESV 135
           V+                                                +VSGS D ++
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           R+WD+ TG+CL  L  H   V       DG  +VS +YD + ++WD  +  CL TL    
Sbjct: 120 RVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           N          +G ++++ +LD ++++WD
Sbjct: 178 NR---VYSLQFDGIHVVSGSLDTSIRVWD 203

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 1e-20
 Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 44/244 (18%)

Query: 19  LKFTLAGHTKAVSSVKFSPN--------------------------------------GE 40
              TL GHT  V S +   N                                       +
Sbjct: 49  CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 41  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100
            + S S D  +++W    G+    + GH   +       D R +VSG+ D  +K+W+  +
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET 166

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
             CL TL+GH+N V+   F+     +VSGS D S+R+WDV TG C+ TL  H    S + 
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 220
                +++VS + D   +IWD  +GQCL+TL   +    +      N  +++ ++ D T+
Sbjct: 225 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 221 KLWD 224
           KLWD
Sbjct: 283 KLWD 286

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 92.2 bits (227), Expect = 2e-22
 Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 18/189 (9%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAW 77
                  +  F  + + L   S   L          F          I       +    
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235

Query: 78  SSDSRLLVSGS-------DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
              S    +G           +    +    + +  L+              +       
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295

Query: 131 FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
               +  +DV+T K    +    + ++ +  + D   ++    DG    +     +  +T
Sbjct: 296 EKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

Query: 191 LIDDDNPPV 199
           +  D  P V
Sbjct: 352 VETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 81.1 bits (198), Expect = 2e-18
 Identities = 20/219 (9%), Positives = 57/219 (26%), Gaps = 20/219 (9%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
                  +       P           + I ++     K     +         A+ +DS
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADS 190

Query: 82  RLLVSGSDDKTLKIWELSSGKC-------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           + L   S        +                +             P+S    +G +D +
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

Query: 135 VRIW-------DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
                      D    + +  L +     S        +    +   G+   +D  + + 
Sbjct: 251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK- 309

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
           +  + ++    ++ ++ S + K ++    D  +  +  +
Sbjct: 310 VTEVKNN----LTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 75.7 bits (184), Expect = 1e-16
 Identities = 12/143 (8%), Positives = 36/143 (25%), Gaps = 11/143 (7%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGIS 73
           F +     + +  K  P      +                    D +    +    L  S
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
                  +       +   L  +++ + K    +    N +     +     ++    D 
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 134 SVRIWDVRTGKCLKTLPAHSDPV 156
            +  + +   +  +T+     P+
Sbjct: 337 KIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.1 bits (167), Expect = 3e-14
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 13  PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 72
              +Y +   L       S         +   +    ++  +     K    ++  K  +
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNL 317

Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107
           +D+  S+D + ++   DD  +  + L   +  +T+
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 6e-10
 Identities = 25/213 (11%), Positives = 55/213 (25%), Gaps = 20/213 (9%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
                +  V+   + +            + I+        +    +   +  +    + +
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV----------FCCNFNPQSNLIVSGSFD 132
             V  +D   +   +L +GK     +     +          F     P  +    G   
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 190
           +++ ++D+   K       +S    A  F+ D   +   SY  L    D           
Sbjct: 159 QAIHVYDMEGRKIFAATTENSH-DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 191 ----LIDDDNPPVSFVKFSPNGKYILAATLDNT 219
               +I       +  K  P      A   D  
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 75  VAWS-SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
             +S  D  L+   S  +   I ++S    LK        +        + +       E
Sbjct: 8   EDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 134 --SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
              + I+D RTGK  +    +   V A+  +R+G   V ++        D  +G+     
Sbjct: 65  GDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123

Query: 192 IDDDNPPVSFVKF 204
              +     F   
Sbjct: 124 RSREAMITDFTIS 136

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLK 221
           DG LI   S      I D +    LK     +   + +V+   + K          + L 
Sbjct: 14  DGDLIAFVSRGQA-FIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 222 LWDSK 226
           ++D +
Sbjct: 70  IYDYR 74

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 3e-22
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 15/154 (9%)

Query: 37  PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW 96
            + +++ S+S D+ IK+W     +F +T++GHK GI+        RL+VSGS D T+++W
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLW 203

Query: 97  ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---------KCLK 147
           ++  G CL+ L+GH            +  IVSG++D  +++WD+             CL+
Sbjct: 204 DIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261

Query: 148 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           TL  HS  V  + F  D   IVSSS+D    IWD
Sbjct: 262 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 1e-19
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
              D + +VS S D+T+K+W  S+ + ++TL GH   + C  +     L+VSGS D ++R
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIR 201

Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QC 187
           +WD+  G CL+ L  H + V       D   IVS +YDG  ++WD  +           C
Sbjct: 202 LWDIECGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           L+TL++             +   I++++ D+T+ +WD
Sbjct: 260 LRTLVEHSGRVFRL---QFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 4e-18
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 50/244 (20%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
             +  +K V       + + + S   D  IKIW     + ++ ++GH   +  + +    
Sbjct: 10  CRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 82  RLLVSGS--------------------------------------DDKTLKIWELSSGKC 103
            +  S                                         D+++ +W+++S   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 104 L---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
           +   + L GH   V   +F+ +   IVS S D ++++W+  T + ++TL  H   ++ + 
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 220
           +     L+VS S D   R+WD   G CL+     +           + K I++   D  +
Sbjct: 186 Y--RDRLVVSGSSDNTIRLWDIECGACLRV---LEGHEELVRCIRFDNKRIVSGAYDGKI 240

Query: 221 KLWD 224
           K+WD
Sbjct: 241 KVWD 244

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 4e-18
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 48/222 (21%)

Query: 66  SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL 125
           S    G+  + +  D + +VSG  D T+KIW+ ++ +C + L GH+  V C  ++ +  +
Sbjct: 12  SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 126 IVSGSFDE--------------------------------------SVRIWDVRTGKCL- 146
             S                                           S+ +WD+ +   + 
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 147 --KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
             + L  H   V+ V F+     IVS+S D   ++W+T++ + ++TL   +         
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIACL 184

Query: 205 SPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYFYRN 246
               + +++ + DNT++LWD +      +      L    R 
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           TL  H+  V  ++F      + SSS D  I IW
Sbjct: 262 TLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.5 bits (212), Expect = 2e-20
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSRL 83
             + +S   ++ +   +A    +  + I+     K+ +   +  H   ++ V W+ DS  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 84  LVSGSDDKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
           +V+   D+   +W L     K    +   +    C  + P       GS    + I    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 142 TGK----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
                  C          V ++ ++ +  L+ + S D  CRI+     + 
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.4 bits (199), Expect = 2e-18
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 72  ISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 129
           IS  AW+ D   +    ++  + I+E S  K   +  LK H+  V   ++ P SN IV+ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 130 SFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ- 186
             D +  +W ++    K    +   +     V +  +       S   +  I        
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 187 --CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV 227
               K +       V  + + PN   + A + D   +++ + +
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.8 bits (174), Expect = 4e-15
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 6/184 (3%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           P+   +  P   L F  +     V  V FS NG  +A  S D  + +  A       T++
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
              L +  V + ++S L+ +G D     ++   S     +  G  +     +    +   
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG----SLIVSSSYDGLCRIWDT 182
              + D+                  H + VS +     G    S   ++  DG   IWD 
Sbjct: 300 RFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 183 ASGQ 186
            S +
Sbjct: 359 RSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.0 bits (159), Expect = 3e-13
 Identities = 44/248 (17%), Positives = 80/248 (32%), Gaps = 26/248 (10%)

Query: 16  NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
            +V    L  H   V+ V ++P+   + +   D+   +W       K    I        
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSG 129
            V W+ + +    GS  + + I           C    K   + V   +++P S L+ +G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 130 SFDESVRIWDVRTGK------------------CLKTLPAHSDPVSAVHFNRDGSLIVSS 171
           S D   RI+     +                   +    +    V  V F+ +GS +   
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA 231
           S+D    + D      + TL  +  P    V F      ++AA  D    L+        
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPL-LAVTFITESS-LVAAGHDCFPVLFTYDSAAGK 277

Query: 232 IICSTPLN 239
           +     L+
Sbjct: 278 LSFGGRLD 285

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 1e-12
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKY 210
             +P+S   +N+D + I     +    I++ +  +      + + N  V+ V ++P+   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 211 ILAATLDNTLKLWD 224
           I+    D    +W 
Sbjct: 66  IVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.6 bits (150), Expect = 5e-12
 Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 7/175 (4%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
                G+     S     +  V +S++   +   S D T+ + +      + TL   +  
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
           +    F  +S+L+ +G  D    ++   +     +     D           +     + 
Sbjct: 246 LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAATLDNTLKLWD 224
           D       +A+       +  +   VS +     GK          +D  + +WD
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKN--SVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.1 bits (211), Expect = 3e-20
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 2/178 (1%)

Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           + TL GH  +V +        ++ + + DK+I+++ + + KF   +SGH  G+  + ++ 
Sbjct: 5   RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 80  DSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
              L+   +D               +      +              IV+GS D ++ +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
            +     +       D     H   +    V      +  +   +    +      DN
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 9e-20
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL+GH   V  C    + N +++G+ D+ +R++D    K L  L  H   V A+ +   G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            L+  S+   +                 +       +    N KYI+  + DNTL +W 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (189), Expect = 3e-17
 Identities = 30/150 (20%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           T+ GH   +       +   +++G+DDK +++++  + K L  L GH   V+   +    
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 64

Query: 124 NLIVSGSFDESVRIWDVRT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
            ++VSGS D +VR+WD++      +      +     +   ++   IV+ S D    +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
                 +    ++ + P+ F     N  ++
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 1e-12
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 5/187 (2%)

Query: 38  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
           +G  + S S D  + +W     K    +SGH   I    +  + +  +S S D T++IW+
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229

Query: 98  LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS 157
           L +G+ + TL+GH+  V     + +  +  +          +  + K       H   +S
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF----SYHHTNLS 285

Query: 158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 217
           A+        I+ S  +    I++  SG+ +   I  D   +  V F      + A   D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKD 344

Query: 218 NTLKLWD 224
               L  
Sbjct: 345 GQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSRLL 84
           H   +S++      + +  S ++    I+    GK     I      I  V +     L+
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLV 338

Query: 85  VSGSDDKTLKIWELS 99
            +   D    +  L 
Sbjct: 339 AAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-07
 Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 59/265 (22%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAW 77
               L+GH   V ++K++  G  ++ S+   +                    +   D+  
Sbjct: 45  FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104

Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF---------------------C 116
             + + +V+GS D TL +W+L     +       +Y                        
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164

Query: 117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 176
              +   N++VSGS+D ++ +WDV   KCL  L  H+D + +  ++ +    +S+S D  
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 177 CRIWDTASGQCLKTLIDDDNP-------------------------------------PV 199
            RIWD  +G+ + TL                                            +
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +        IL +  +N   +++
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYN 309

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 3e-19
 Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 43/228 (18%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------AYDGKFEKTISGHKLGISDV 75
           +    ++  +SV  S  G  +A+   +  ++I         Y+ + + ++  +   I  V
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 76  AWSSDSRLLVSGSDDKTLKIW----------------ELSSGKCLKTLKGHSNYVFCCNF 119
            +S    LL    D  +                       S +       HS++V   +F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS----AVHFNRDGSLIVSSSYDG 175
           N     + S  +D  +R WDV+T + + TL  H D +      +  +  G  +       
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
           +  +                         +   + +    LD +++ +
Sbjct: 358 VKFLKKGWRSGM----------------GADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 7e-16
 Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAW- 77
            H   + SV    +  +  S S D  +K+W       E           HK G+  V   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 78  ------SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-------- 123
                 + +  L+ + S    L  + ++     K +      +   +    S        
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 124 -------NLIVSGSFDESVRIWDVRTGK------------------CLKTLPAHSDPVSA 158
                  + +V+     +  IW                         +++    S   ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 159 VHFNRDGSLIVSSSYDGLCRIW 180
           V  +  G LI +   +G  +I 
Sbjct: 190 VDISERG-LIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 4e-14
 Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 48/202 (23%)

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGH---------SNY 113
            H   I  V+  +     VS S D  LK+W+           K+                
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-------- 165
                   +  L+ + SF   +  + +      K +      +      +          
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 166 -------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSF 201
                    +V++   G   IW           +  +  P                  + 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 202 VKFSPNGKYILAATLDNTLKLW 223
           V  S  G  I     + T+++ 
Sbjct: 190 VDISERG-LIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 8e-13
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 29/149 (19%)

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC------LKTLPAHSDPV 156
                K H   +F  +     +  VS S D  +++WD +            +   H   +
Sbjct: 6   TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 157 SAVHF-------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF-------- 201
             V           +  L+ ++S+ G    +        K +I +    +          
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 202 -VKFSPNG-----KYILAATLDNTLKLWD 224
            +K+  +        ++A  +  T  +W 
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWK 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 36/277 (12%), Positives = 88/277 (31%), Gaps = 62/277 (22%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKF 61
              + +      ++   H   +  V         +     +A++S    +  +       
Sbjct: 42  KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101

Query: 62  EKTISGHKLG----------ISDVAWSSDS-----RLLVSGSDDKTLKIWELSSGK---- 102
            K +   KL              + W + +       LV+     T  IW+         
Sbjct: 102 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161

Query: 103 --------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI------WDVRT 142
                          +++    S +    + +    LI +G  + +V+I        +  
Sbjct: 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYN 220

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRIWDTASGQCLKTLIDDDNP-- 197
            +   ++  +S+ + +V F+  GSL+  +          +++T  G+ + +L    +   
Sbjct: 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 280

Query: 198 ----------PVSFVKFSPNGKYILAATLDNTLKLWD 224
                      V  + F+ +G+ + +A  D  L+ WD
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           S S P  +         H+  V S+ F+ +GE L S+  D  ++ W     +   T++ H
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 69  KLGISD----VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
              I      +A       L          +  L  G                     + 
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADL------------NE 375

Query: 125 LIVSGSFDESVRIW 138
            +     D S+R +
Sbjct: 376 SLCCVCLDRSIRWF 389

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 4e-19
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
             T  + S+ + P GEWLA       +++         +    H+  +  + ++   +  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWF 280

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
           VS   D  L  W    G  +      S+ V  C+ +     IV+GS D+   +++V
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 3e-17
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
           H + V    F       VS   D  +  W    G  +      S  V +   + D   IV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 170 SSSYDGLCRIWD 181
           + S D    +++
Sbjct: 323 TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 1e-16
 Identities = 41/259 (15%), Positives = 74/259 (28%), Gaps = 48/259 (18%)

Query: 10  SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 69
           S     + V +         + S K  P+G  L        + IW               
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139

Query: 70  LGIS--------------------------------------------DVAWSSDSRLLV 85
              +                                             +  S+D   L 
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           +G  D T++ W+L  G+ L+     ++ +F   + P    +  G    +V +  V     
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258

Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 205
            +    H   V ++ F   G   VS+  D L   W T  G  +    +     V     S
Sbjct: 259 YQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDIS 315

Query: 206 PNGKYILAATLDNTLKLWD 224
            + KYI+  + D    +++
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 1e-13
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 53/261 (20%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 69
           P +  +     H + V +V  S     + +      +K+W       +  +S        
Sbjct: 39  PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97

Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY---------------- 113
             I       D   L+ G +  TL IW+L++       +  S+                 
Sbjct: 98  NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157

Query: 114 ----------------------------VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
                                         C + +     + +G  D +VR WD+R G+ 
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217

Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 205
           L+     +  + ++ +   G  +          +         +  + +       +KF+
Sbjct: 218 LQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL--SLKFA 274

Query: 206 PNGKYILAATLDNTLKLWDSK 226
             GK+ ++   DN L  W + 
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-13
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           F  A  +K   S   + +G+        D LI        +   T+  H   +  V  S+
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN 61

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDES 134
            +R + +G     +K+W++S       +         NY+  C   P    ++ G    +
Sbjct: 62  PTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 135 VRIWDVRTGKC 145
           + IWD+     
Sbjct: 121 LSIWDLAAPTP 131

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 152 HSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
            S P  + H   DG +  V    D L         + + TL   +   V  V  S   ++
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGE--VVCAVTISNPTRH 65

Query: 211 ILAATLDNTLKLWD 224
           +        +K+WD
Sbjct: 66  VYTGG-KGCVKVWD 78

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.4 bits (194), Expect = 6e-18
 Identities = 24/205 (11%), Positives = 51/205 (24%), Gaps = 28/205 (13%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTI 65
             +         +         ++   +S     L   +    I       G   F   +
Sbjct: 175 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234

Query: 66  SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL 125
                      W       V+                                   Q + 
Sbjct: 235 EALTEAERADGWRPGGWQQVAYHRALDRIYL----------------------LVDQRDE 272

Query: 126 IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTA 183
               +    V + D +TG+ L         + +++ ++D    L   S+ D    I D  
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNG 208
           SG+ L+++    + P   +  +  G
Sbjct: 332 SGEELRSVNQLGHGP-QVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 32/222 (14%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
               +  +   V        T   +      +G     +   +            E    
Sbjct: 136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT----EVFHP 191

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQSN 124
             +  I+  A+S  +  LV  +    +   +LSSG    L  ++  +       + P   
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
             V+                                           +      + D  +
Sbjct: 252 QQVAYHRALDRIYL----------------------LVDQRDEWRHKTASRFVVVLDAKT 289

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWD 224
           G+ L     +    +  +  S + K +L A    D TL + D
Sbjct: 290 GERLAKF--EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 23/187 (12%), Positives = 53/187 (28%), Gaps = 33/187 (17%)

Query: 75  VAWSSDSRLL-----VSGSDDKTLKIWELSSGKCLKTLKGHS----------NYVFCCNF 119
            A + D+R +        +      + +  +G+ +  + G            +++   + 
Sbjct: 7   EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAST 66

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI---------VS 170
               + I  G   + V ++D  T      +     P   V      + +           
Sbjct: 67  V--FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNP------PVSFVKFSPNGKYIL-AATLDNTLKLW 223
            S      + D       + L   D        P +F     +G     A   + T ++ 
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 224 DSKVVTP 230
            ++V  P
Sbjct: 185 HTEVFHP 191

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.4 bits (194), Expect = 7e-18
 Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 46/242 (19%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSAD------------KLIKIWGAYDGKFEKTISGHKL-- 70
              +++ S   SP+G+ + ++                 ++++   DG   K +    +  
Sbjct: 86  EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145

Query: 71  GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS------------------- 111
            +  +  + D  L V+G D       ++ +GK    L   +                   
Sbjct: 146 QVYLMRAADDGSLYVAGPDIY---KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 112 ------NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRD 164
                        F        +          D++TGK      A  ++       +  
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
               +          +D    + +K    D       V F   G  +      N L +++
Sbjct: 263 DPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY--YCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 225 SK 226
             
Sbjct: 320 PD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 78.6 bits (192), Expect = 1e-17
 Identities = 14/118 (11%), Positives = 39/118 (33%), Gaps = 3/118 (2%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDE 133
             +  D +   +          +L +GK         +   F    +P+    + G  + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
            +  +D++  K +K           V F++ G  +          +++  + + +K +
Sbjct: 274 -LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 74.8 bits (182), Expect = 2e-16
 Identities = 25/240 (10%), Positives = 55/240 (22%), Gaps = 49/240 (20%)

Query: 33  VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSD-SRLLVSGSDD 90
                  E++  ++    + +         K+     K G      + D     V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 91  KTLKIWELSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDES---------- 134
             +   +L + K                 ++    +P    + +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 135 --VRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
             + ++    G   K +        V  +    DGSL V+          D  +G+    
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVA 178

Query: 191 LIDDDNP------------------------PVSFVKFSPNGKYILAATLDNTLKLWDSK 226
           L   +                            +  +F  + +    A L       D K
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 74.0 bits (180), Expect = 6e-16
 Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 3/135 (2%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSRLL 84
            +   +  +F  + +  A++             GK   +  +           S      
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK 144
           + G  +  L  ++L   K +K      +  +C  F+ + + +  G     + +++  T +
Sbjct: 267 IYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

Query: 145 CLKTLPAHSDPVSAV 159
            +K +      +S  
Sbjct: 325 KVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.1 bits (157), Expect = 7e-13
 Identities = 15/184 (8%), Positives = 45/184 (24%), Gaps = 21/184 (11%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN-LIVSGSFD 132
            A  +    ++  +    L + +++S    K+               P +    V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 133 ESVRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
             +   D+ T K                 + +   + DG  + ++               
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 187 CLKTLIDDDNP-------------PVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII 233
               +    +               V  ++ + +G   +A      + +   K      +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 234 CSTP 237
            +  
Sbjct: 182 RNWN 185

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.8 bits (184), Expect = 9e-17
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAV 159
           G   +   GH+  +   + +     + S   +  +  WD+ TG   +  P  H+  ++ +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 160 HFNRDGSLIVSSSYDGLCRIWDTASG 185
                G L   S  D L  +    SG
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.3 bits (175), Expect = 1e-15
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 59  GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCC 117
           G  ++   GH   I+ ++ S+D + L S   +  +  W++S+G   +     H+  +   
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKC 145
               + +L      D  +++        
Sbjct: 62  KTTSKGDLFTVSWDDH-LKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.0 bits (156), Expect = 6e-13
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
           G   +    H+  ++A+  + DG  + S+  +G    WD ++G   +   D     ++ +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 203 KF 204
           K 
Sbjct: 62  KT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.2 bits (146), Expect = 1e-11
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAW 77
           +     GH KA++++  S +G+ L S+ A+  I  W    G   +     H   I+ +  
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 78  SSDSRLLVSGSDDKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 135
           +S   L     DD    +    SG           S+       +   ++ V+  +    
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 136 RIW 138
              
Sbjct: 124 IYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 4e-10
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH--FNRDGSL 167
           H+  V C +++P +  + +GS D SV +W++        +   +  +S+V+     + + 
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 168 IVSSSYDGLCRIWD 181
           IVS+  D   + W+
Sbjct: 283 IVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 4e-09
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 85  VSGSDDKTLKIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
            +GS D ++ +W ++       +    H+              IVS   D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.8 bits (119), Expect = 4e-08
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 37  PNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLK 94
           P+   LA+ S D  + +W          I    H +   +     +   +VS   D  +K
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 95  IWELS 99
            W + 
Sbjct: 294 FWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 9e-07
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 1/123 (0%)

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
                      V   N                  + +        +   H+  V+ V ++
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLK 221
            D   + + S D    +W+         +I   +           N   I++A  D+ +K
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 222 LWD 224
            W+
Sbjct: 294 FWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 8e-04
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           KP+         H  +  +     N   + S+  D  IK W
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           G   +     +   ++ +  S +GK + +A  +  +  WD
Sbjct: 2   GSIDQVRYGHNKA-ITALSSSADGKTLFSADAEGHINSWD 40

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.7 bits (184), Expect = 1e-16
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSS 79
               H+   +  K SP+G + AS      ++IW         + TI      + D++W S
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC----------------------- 116
           +S+ + +  + +                                                
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172

Query: 117 ----------------------CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT------ 148
                                   +NP  +L  S   D ++ +++   G           
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 232

Query: 149 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
              AHS  V  + ++ DG+ I S+S D   +IW+ A+ +  KT+          +     
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292

Query: 208 GKYILAATLDNTLKLWD 224
            + +++ + +  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 2e-10
 Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 2/92 (2%)

Query: 97  ELSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155
           E S      +L   +          P  + I   +   SV    V +    +    HS  
Sbjct: 2   EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ 60

Query: 156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            +    +  G    S    G  RIWDT     
Sbjct: 61  TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 3e-10
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           +  +     +   +   ++    + S    +    HS+       +P      SG    +
Sbjct: 23  LGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 135 VRIWDVRTGKC 145
           VRIWD      
Sbjct: 82  VRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 9e-10
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 34  KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKT 92
            +SP+G  +AS+SADK IKIW     K EKTI    ++    +      + LVS S +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 93  LKIWEL 98
           +     
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 2e-09
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
              +  +P G+ +   +    +           +  + H    +    S       SG  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 90  DKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNL 125
              ++IW+ +        T+   S  V   +++ +S  
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.5 bits (181), Expect = 3e-16
 Identities = 18/136 (13%), Positives = 40/136 (29%), Gaps = 4/136 (2%)

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT-LKGHSNYVFCCNFNPQSNLI 126
             +         D       +    L   +L +G+     ++    + F    NP     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
                   +  +D+     +K +P       +V+ + DGS +      G    +D  + +
Sbjct: 256 FG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 187 CLKTLIDDDNPPVSFV 202
               +    N  +S  
Sbjct: 313 KKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.5 bits (163), Expect = 8e-14
 Identities = 13/143 (9%), Positives = 40/143 (27%), Gaps = 6/143 (4%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV 85
              A        + +    ++    +       G+         + +   + + +     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTR 254

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           +      L+ ++L     +K +    +  +  N +   + +  G     +  +D  T + 
Sbjct: 255 AFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 146 LKTLPAHSDP----VSAVHFNRD 164
              +    +      S   F RD
Sbjct: 314 KGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.4 bits (155), Expect = 1e-12
 Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 39/235 (16%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------EKTISGHKLGISD 74
             K++     SP+G+ LA   +   +++                    +        I+ 
Sbjct: 80  RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC----------------- 117
           +AW+ D   L     D    + +  +G  ++     S                       
Sbjct: 140 LAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197

Query: 118 ------NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171
                       +     ++   +   D+ TG+           V       + +   + 
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAF 256

Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK 226
               +   +D      +K +    +     V  S +G  +        L  +D++
Sbjct: 257 GAYNVLESFDLEKNASIKRVPLPHSY--YSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.1 bits (149), Expect = 6e-12
 Identities = 20/211 (9%), Positives = 59/211 (27%), Gaps = 25/211 (11%)

Query: 40  EWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWSSD-SRLLVSGSDDKTLKIW 96
           +++ + +    + +        +K I+    G +      +        + +  ++L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 97  ELSSGKCLKTLKGHS-----------------NYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           +L +G+ L  +   +                   +       +  L         V ++D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
             T    K        ++ + + RDGS +     D    + D  +G  ++          
Sbjct: 122 AETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAE 178

Query: 200 SFVKFSPNGKYILAATLDNTLKLWDSKVVTP 230
           ++    P+   +      + +          
Sbjct: 179 TY--AQPDVLAVWNQHESSGVMATPFYTARK 207

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.6 bits (145), Expect = 2e-11
 Identities = 16/180 (8%), Positives = 47/180 (26%), Gaps = 18/180 (10%)

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSN-LIVSGSFDESVRIW 138
             +++ +    L + +       K +               P       + +  ES+   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 139 DVRTGKCLKTLPAHS-----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 193
           D+ TG+ L  +   +       +     + DG  +          +           L D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 194 ----------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLNYF 243
                     +    ++ + ++ +G  +     D  +   ++  +       +     Y 
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 7/54 (12%), Positives = 16/54 (29%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
               +  SV  S +G  +    A   +  + A   + +  +         +A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 20/186 (10%), Positives = 53/186 (28%), Gaps = 26/186 (13%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 67
            +++      V          +  + + +  G  + + ++  L     A     +  I G
Sbjct: 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDG 251

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
           ++ G     + S    +V+   +    +                                
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS-----------------------RS 288

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASG 185
             +  E+        G+    +  +     A+   +DG+     +S+   +  I+D AS 
Sbjct: 289 CLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347

Query: 186 QCLKTL 191
           Q   ++
Sbjct: 348 QDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 16/196 (8%), Positives = 34/196 (17%), Gaps = 24/196 (12%)

Query: 66  SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW--ELSSGKCLKTLKGHSNYV--------F 115
            G        A S  S + +      T + W      G  L    G    +         
Sbjct: 19  DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSD 78

Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-------VHFNRDGS-L 167
               +        G   + V ++D  T   +  +     P  +       +      + L
Sbjct: 79  FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138

Query: 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS------FVKFSPNGKYILAATLDNTLK 221
           +                    +         +           S       +        
Sbjct: 139 LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198

Query: 222 LWDSKVVTPAIICSTP 237
                         + 
Sbjct: 199 AGIVGAQCTGAQNCSS 214

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 2e-15
 Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 21/155 (13%)

Query: 89  DDKTLKIWELSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGSFDESVRIWDVRTG- 143
           ++  ++ + L   +        S              +       S D  V +       
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 144 --------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189
                         +        + PV+++ F+     + ++  DG+   W+  + + +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                +    S VK + +   +  AT D+T K   
Sbjct: 288 NFAKFN--EDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 3e-15
 Identities = 17/217 (7%), Positives = 59/217 (27%), Gaps = 14/217 (6%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWS 78
                   +S +K  P+   L  +S D  + ++          +     +K  +    + 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 79  SDS-RLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
            ++   +  G+    +   +L             +N   C       + +++ S+D  + 
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 137 IWDVRTGKCLKTLPAHSDPVSAV------HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
           + D R          + +  +          + + S ++    +   + +     +    
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 191 ---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                                +    +++D  + +  
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 5e-14
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---GHSNYVFCCNF 119
           +     K  ISD+       LL+  S D +L +++         L     + + + CCNF
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 120 NPQS-NLIVSGSFDESVRIWDVRTGKC 145
              +   I  G+    +   D+     
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 6e-14
 Identities = 15/163 (9%), Positives = 42/163 (25%), Gaps = 20/163 (12%)

Query: 38  NGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLVSGSDDKTL 93
           N   L     +  ++ +     + +                     +       S D  +
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 94  KIWELSSG---------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            +                     +        +  V    F+P+   + +   D  +  W
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +++T K +K      +  S V      +++  ++ D   +   
Sbjct: 279 NLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 8e-14
 Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDG---------------KFEKTISGHKLGISDVAWSS 79
                E  A SS D  + +    D                +     +     ++ + +S 
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
             + L +   D  +  W L + K +K     +            N++   + D++ +   
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN- 319

Query: 140 VRTGKCLKTLPAHSDPVSAVH 160
                  +T+  ++  +  + 
Sbjct: 320 ---AAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSA 158
           + ++  +   +Y+      P  +L++  S+D S+ ++          L     +  P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 159 VHFNRD-GSLIVSSSYDGLCRIWDTASGQC 187
            +F  +    I   +  G     D      
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 6e-12
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 67
           SS       + L          V+S++FSP  ++L ++ +D +I  W     K  K  + 
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF 115
                S V  +    +L   + D T K          +T++ +++ ++
Sbjct: 292 FN-EDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 2e-11
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSF 201
           + ++   A  D +S +      SL++ +S+DG   ++          L+       P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 202 VKFSPNGKYILA 213
             F  N    + 
Sbjct: 62  CNFIDNTDLQIY 73

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.9 bits (161), Expect = 1e-13
 Identities = 46/278 (16%), Positives = 79/278 (28%), Gaps = 65/278 (23%)

Query: 12  NPKPNYVLKFTLAGH-TKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTI--- 65
           +            GH +  V++VKFSP    ++L S      + +WG    K   ++   
Sbjct: 47  DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 106

Query: 66  -----SGHKLGISDVAWSSDSRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSNYVFCCN 118
                      ISD++W  + R L    +  D         SG  L  + GHS  +  C+
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 166

Query: 119 FNPQSNLIVSGSFDESVR----IWDVRTGKCLKTLPAHSDPVSAVHFNR----------- 163
                 +      D+           +     +T       V  V F+            
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 164 -----------------------------------DGSLIVSSSYDGLCRIWDTASGQCL 188
                                              D     +   D   R+WD  + +C+
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286

Query: 189 KTLIDDDNP-PVSFVKFSPNG-KYILAATLDNTLKLWD 224
           +    D        V     G   I++ +LD TL  ++
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 5e-12
 Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 76  AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC---CNFNPQSNLIVSGSFD 132
               DS+   +   D T+++W++++ KC++        +           +  I+S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 133 ESVRIWDV 140
            ++  +++
Sbjct: 318 GTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 6e-09
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 30  VSSVKFSPNGEWLASSSADK-LIKIWGAYDGKFEK--TISGHKLG-ISDVAWS--SDSRL 83
            + + + P    +A        ++     D K       +GH    ++ V +S    S+ 
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 84  LVSGSDDKTLKIWELSSGKCLKTL--------KGHSNYVFCCNFNPQSNLIV--SGSFDE 133
           L SG +   + +W  +  K   ++        +  +  +   +++ +   +       D 
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
                   +G  L  +  HS  ++A H  +   +   +  D    ++
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 4e-06
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGK--CLKTLPAH-SDPVSAVHF--NR 163
             N+    +++P +N I       + VR  D    K   +     H S  V+ V F   +
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PVSFVKFSPNGKY 210
               + S    G   +W     +   ++  +          P+S + +   G+ 
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 7e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 156 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASG--QCLKTLIDDDNPPVSFVKFSP--NGKY 210
            + + ++   + I          R  D        +       +  V+ VKFSP    +Y
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 211 ILAATLDNTLKLW 223
           + +      + +W
Sbjct: 80  LCSGDESGKVIVW 92

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.4 bits (158), Expect = 7e-13
 Identities = 15/165 (9%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
                 +   V+  D   + + +  S K +K +      V     +     ++    D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84

Query: 135 VRIWDVRTGKC-----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189
           + + D+   +      +K         S+     +    ++ +Y               K
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC 234
            ++      V    + P  +           +   +   T  ++ 
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 47/234 (20%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGI 72
           K    L  T  G    ++   +  +   ++ +++    + +  + D +    +   K   
Sbjct: 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 252

Query: 73  SDVA---------------WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
                                 D  + + G+D K    +   + K +  L+G        
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309

Query: 118 NFNPQSNLIV-------SGSFDESVRIWDVRTGKCLKTLPAHSD-------PVSAVH--F 161
             +P+S+ +             +SV ++D++       +   ++           V   +
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369

Query: 162 NRDGSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
           N+ G  +  S +          + D  + + LK ++ D  P +     +P GK+
Sbjct: 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLK-LKAVVKD--PRL----ITPTGKF 416

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 34/236 (14%)

Query: 28  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTISGHKLGISDVAWSSDSR 82
            AV   + S +G +L     D  I +   +  +       K     +   S      + R
Sbjct: 62  YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 83  -LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 140
             +          I +  + +  + +      V    ++P+  +  +  S +    I +V
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181

Query: 141 R-TGKCL-----------KTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTASGQC 187
           + TGK L            T    +  ++   ++      + +++      + D+   + 
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL 241

Query: 188 LKT--------------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT 229
                             +     PV       +G   L  T       +  K V 
Sbjct: 242 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLA-------SSSADKLIKIWGAYDGKFEKTISGHK-- 69
               L G       +K  P    L         +   + + ++   +   +  +      
Sbjct: 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354

Query: 70  -------LGISDVAWSSD-SRLLVSGS------------DDKTLKIWELSSGKCLKTLKG 109
                    +    ++     +  S              DDKTLK+  +     L T  G
Sbjct: 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

Query: 110 HSN 112
             N
Sbjct: 415 KFN 417

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 24/239 (10%), Positives = 54/239 (22%), Gaps = 41/239 (17%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSR 82
                 SS        +  + +           +    K I   +    D          
Sbjct: 106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 165

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-- 140
             +  S +    I  +     +  +               +  +  G +D S R +    
Sbjct: 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA 225

Query: 141 --------------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174
                                       G+    +     PV +     DGS+ +  +  
Sbjct: 226 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285

Query: 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-------LDNTLKLWDSK 226
                +       L+           F+K  P   ++   T       +  ++ ++D K
Sbjct: 286 KNHPQYAWKKVAELQGQ----GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.2 bits (158), Expect = 7e-13
 Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           +++ ++   V+      + + D  T +    L            +  G  +     DG  
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKV 85

Query: 178 RIWDTASGQCLKTL-IDDDNPP---VSFVKFSPNGKYILAA-TLDNTLKLWDSKVVTPAI 232
            + D    +      I   +      +        KY +A         + D + + P  
Sbjct: 86  NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145

Query: 233 I 233
           I
Sbjct: 146 I 146

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (157), Expect = 8e-13
 Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 18/159 (11%)

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
             V+  D   + + + S+ +    L      V     +     +     D  V + D+  
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 143 GKC-----LKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLID--- 193
            +      +K         ++     +    I  + +     I D  + +  K       
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 194 -------DDNPPVSFVKFSPNGKYILAATLD-NTLKLWD 224
                     P V+ +  S      +    +   + L D
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 23/220 (10%), Positives = 55/220 (25%), Gaps = 20/220 (9%)

Query: 28  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTISGHKLGISDVAWSSDSR 82
            AV   + S +G +L     D  + +   +  +       K  S  +   +      + +
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 83  LL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN------------LIVSG 129
                        I +  + +  K             ++P+               IV+ 
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
                + + D      LKT    ++        +      ++++      +        L
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV 228
             + D             N  +     +  T  + D  V 
Sbjct: 242 VAIEDTGGQTPH-PGRGANFVHPTFGPVWATSHMGDDSVA 280

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 15/151 (9%)

Query: 65  ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
           I     G  D AW         G     +K    S    +         +          
Sbjct: 282 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 341

Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-----DGLCRI 179
            +     D   +   +        +      V    FN+DG+ +  S +     +    +
Sbjct: 342 AMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 398

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
            D  + + LK +I D+         +P GK+
Sbjct: 399 VDDKTLE-LKHVIKDER------LVTPTGKF 422

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 17/112 (15%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 73
                +  TL    +   SV    + + +    +D   K     +      I+  +  + 
Sbjct: 316 SQYLYVDATLNPEAEISGSV-AVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVV 371

Query: 74  DVAWSSDSRLLVSGS-------------DDKTLKIWELSSGKCLKTLKGHSN 112
              ++ D   +                 DDKTL++  +   + L T  G  N
Sbjct: 372 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFN 423

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.3 bits (149), Expect = 4e-12
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLI 126
                       +  L+ +GS D  + I+ +    K +K L  H + V    +    + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTL 272

Query: 127 VSGSFDESVRIWDV 140
           VS   D  ++ W+V
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 8e-11
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAV 159
             + LKT+ GH+  +     NP    ++SGS+D  +  W   +         HS+ + ++
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52

Query: 160 HFNRDGSLIVSSSYDGLCRIW 180
             ++       S  D L    
Sbjct: 53  DNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 3e-09
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 31  SSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
            + +     + +A+ S D  I I+      K  K ++ HK G++++ W + S  LVS   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 90  DKTLKIW 96
           D  +K W
Sbjct: 278 DACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 6e-09
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGH  GI+ +  +     L+SGS D  +  W  SS       + HSN +   + +  
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155
                    D        +     +   A ++ 
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANN 90

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 9e-08
 Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 1/115 (0%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
            S             L+      E            +  +        A     +  L+ 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           + S D    I+       +   ++     V+ + +      ++++  D  +K W+
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 1e-07
 Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 20/186 (10%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           T++GH K ++++  +P    L S S D  I  W +           H   I  +  S   
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ 58

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
                         W+ +      T     +     + N      V  + D+ + +    
Sbjct: 59  EYSSI--------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
                       +   +        + V        +++  +  +    L        S+
Sbjct: 111 ---GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167

Query: 202 VKFSPN 207
           +  SP+
Sbjct: 168 ISISPS 173

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 3e-07
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
             + LKT+  H+  ++A+  N     ++S SYDG    W ++S     +        +  
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS------NLIVS 51

Query: 202 VKFSPNGKYI 211
           +  S   +Y 
Sbjct: 52  LDNSKAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
            L  H   V+++ +      L SS AD  IK W
Sbjct: 253 ALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 58.0 bits (138), Expect = 1e-10
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 185
           ++ S  +++ + DV + K   T+P  S+P+     + DG+ + V++++     I DTA+ 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 186 QC 187
             
Sbjct: 65  NV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 55.6 bits (132), Expect = 8e-10
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-L 167
              + +       ++ +     +  +V + D  T K    +P   DP + +    DG  +
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKV 258

Query: 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
            V+ S+     + DTA+     T+    NP
Sbjct: 259 YVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 55.3 bits (131), Expect = 1e-09
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 92  TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLP 150
           T+ + +  + K    +    +        P    + V+ SF  +V + D  T     T+ 
Sbjct: 225 TVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

Query: 151 AHSDPVSAVHF 161
              +P ++  F
Sbjct: 284 VGKNPYASGQF 294

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 2/155 (1%)

Query: 44  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK 102
           ++S    I +      K   TI            S D +++ V+ +    + I + ++  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
            + T+   S+            + V+     ++ + D  +     T+     P+      
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
               L V+++ D    + +T +   + T+    +P
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTG 143
           ++ S+   + + +++S K   T+   SN       +P    + V+ +    V I D  T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 203
             + T+PA S P           + V++       + DT S     T+    +P    + 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GLA 122

Query: 204 FSPNGKYI 211
            SP+GK +
Sbjct: 123 LSPDGKKL 130

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKCLKTLK 108
                 K    I       + +A + D  ++ V+ S   T+ + + ++     T+ 
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.6 bits (111), Expect = 4e-07
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 224
           +++S      + D  S +   T+    NP       SP+G  +  A    N + + D
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP--MGAVISPDGTKVYVANAHSNDVSIID 60

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 48/243 (19%)

Query: 28  KAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS 86
                   SP+G  +  +++    + I          T+                ++ V+
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91

Query: 87  GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 146
                TL + + +S     T+K   + +          L V+ + D++V + +  T   +
Sbjct: 92  NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151

Query: 147 KTLPAHSDPVSAV--------------------------------------------HFN 162
            T+     P                                                   
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLK 221
               +     Y     + DT + +    +    +P  + +  +P+GK +  A +  NT+ 
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP--AGIAVTPDGKKVYVALSFCNTVS 269

Query: 222 LWD 224
           + D
Sbjct: 270 VID 272

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSN-LIVSGSFDES 134
           S    + ++  + + + +W L+    L   +       V     +P    L V    +  
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSA---VHFNRDGSLIVSSSYDGLCRIW 180
           V  + +       T  A S    +   +  +  G  +   SY+      
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGKYILAATL-DNTLKLWD 224
           + ++S       +W+      L      D P  V  +  SP+ +Y+      +  +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 32/212 (15%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           + +      G++  S+  +    +  A   + ++            A          G D
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-D 236

Query: 90  DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKT 148
            K   +      +  + +          N +P     I +G    +V +  +   K    
Sbjct: 237 SKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDL 293

Query: 149 LPAHSDPVSAVH-------------FNRDGSLIVSSSYDGLCRIWD---------TASGQ 186
                +    +              F+  G+   +   D     W+              
Sbjct: 294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353

Query: 187 CLKTLIDDDNPP-----VSFVKFSPNGKYILA 213
            ++  +D    P             +GK+++ 
Sbjct: 354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 15/149 (10%)

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
              SG     +++  + S + L  +      VF    N  S     G  +ES  I     
Sbjct: 13  GFWSGGHQGEVRVLGVPSMRELMRI-----PVF----NVDSAT-GWGITNESKEILG--G 60

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
            +       H   +S      DG  L ++   +           +  K     +   +  
Sbjct: 61  DQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHG 120

Query: 202 VKFSPNGK--YILAATLDNTLKLWDSKVV 228
           ++     K  Y+         +  D    
Sbjct: 121 LRLQKVPKTNYVFCNAEFVIPQPNDGTDF 149

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 22/221 (9%), Positives = 50/221 (22%), Gaps = 13/221 (5%)

Query: 12  NPKPNYVLKFTLAGHTKAVSS-----VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           N +  + L+      T  V       +    +G   +  ++  +     A        + 
Sbjct: 114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173

Query: 67  GHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL 125
                + +       +   S   + +       +       +    N           N 
Sbjct: 174 VDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNF 231

Query: 126 IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
              G     V +      +  + +P   +P            I +        +      
Sbjct: 232 KTIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK- 289

Query: 186 QCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDS 225
             L  L +D       +   P  G   L  T D     + +
Sbjct: 290 --LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT 328

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 14/112 (12%)

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
            SG     VR+  V + + L  +P          FN D +     + +    I       
Sbjct: 15  WSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGITNESK-EILGGDQQ- 63

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKVVTPAIICSTP 237
                 D  +P +S      +GKY+      +  +      ++    I   P
Sbjct: 64  --YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP 113

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 19/227 (8%), Positives = 64/227 (28%), Gaps = 28/227 (12%)

Query: 23  LAGHTKAVSSVKFSPNGEWLASSS------ADKLIKIWGAYDGKFEK------TISGHKL 70
           +  +   +++ +F P+G  +A             +  +   +G+ ++        +G ++
Sbjct: 36  IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRM 95

Query: 71  GISDVAWSSDSRLLVS---GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
                 +  D  L++S        ++          +  +  +        F     +I 
Sbjct: 96  FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 155

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------ 181
             +F+           +    +  +S     +                +  I D      
Sbjct: 156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ 215

Query: 182 ----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                  G+ L+      +        + +G+ I   +   ++ +++
Sbjct: 216 IYSTDLDGKDLRKHTSFTDYYPRH--LNTDGRRI-LFSKGGSIYIFN 259

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 24/213 (11%), Positives = 50/213 (23%), Gaps = 14/213 (6%)

Query: 10  SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 69
           + NP   + +  T +  +   ++         +           W   +    + +   +
Sbjct: 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ 282

Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
                     D            L   +         +            +  S   +  
Sbjct: 283 NYSVMDICDYDES----SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS 338

Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDG------LCRI-- 179
           + +    I   +  K   T         +       D    +S+ Y G      L +I  
Sbjct: 339 NEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D     CL   ++ +      V FS   KY  
Sbjct: 399 SDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 72  ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
           + ++A + D  + V+  +     I  ++     +        V    F    +L+ +G  
Sbjct: 30  LENLASAPDGTIFVTNHEVGE--IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN 87

Query: 132 DESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
            +S+ +  +               +  ++ +    D   + + SY G   + D       
Sbjct: 88  ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147

Query: 189 KTLIDDDNPPVSFV 202
             L        +  
Sbjct: 148 IWLEHPMLARSNSE 161

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 22/208 (10%), Positives = 62/208 (29%), Gaps = 15/208 (7%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           + ++  +P+G    ++     I      DG  +   +  +  +S +A++S+  L+ +G +
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITP-DGNQQ-IHATVEGKVSGLAFTSNGDLVATGWN 87

Query: 90  DKTLKIWELS---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 146
             ++ +  L               + ++        +  + + S+  ++ + DV      
Sbjct: 88  ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147

Query: 147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-------CRIWDTASGQCLKTLIDDDNPPV 199
             L       S        +  +    + L         +         K    +     
Sbjct: 148 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ 207

Query: 200 SF---VKFSPNGKYILAATLDNTLKLWD 224
           +      F   G    A  + N++    
Sbjct: 208 TNIDDFAFDVEGNLYGATHIYNSVVRIA 235

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAW 77
             +   T    +   +PNG  +  SS+     ++ +    DG+F+  +      +   AW
Sbjct: 207 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW 265

Query: 78  S 78
           S
Sbjct: 266 S 266

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 25/213 (11%), Positives = 60/213 (28%), Gaps = 11/213 (5%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSS 79
            +    + + S  +SP+G  LA  + +                + ++         A+S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 80  DSRLLV-----SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           D   L      +GS +  +        + +   + ++        +         +    
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 152

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
           V   ++  G   +     S    A   +    +++ SS  G   I           ++  
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-S 211

Query: 195 DNPPVSFVKFSPNGKYILAATLDNT---LKLWD 224
                     +PNG  ++ ++       L L  
Sbjct: 212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.95
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.77
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.49
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.89
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.34
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.74
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.18
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.4
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.79
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.22
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.77
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.44
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.22
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.86
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.77
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	80.84

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-38  Score=246.31  Aligned_cols=219  Identities=24%  Similarity=0.397  Sum_probs=194.1

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE--EEEEecccCCeEEEEECCCCCEEEEEcC--CCeEEEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSRLLVSGSD--DKTLKIW   96 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~   96 (247)
                      ..+.+|...|++++|+|+|++|++|+.||.|++|+...+..  ...+..|..+|.+++|+|+++++++++.  +..+++|
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            34568999999999999999999999999999999977653  3557788899999999999999998876  4569999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      ++++++....+.+|...|.+++|+|++.+ +++|+.|+.|++||+++++....+..|..+|.++.++|+++++++++.|+
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            99999888888999999999999999874 88899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCceeeeeecc------CCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         176 LCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      .+.+||..+++....+..      .+...|.+++|+|++++|++|+.||.|+|||.++++++.++..+..
T Consensus       212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence            999999998876655432      2456799999999999999999999999999999988877766544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-35  Score=230.39  Aligned_cols=228  Identities=26%  Similarity=0.434  Sum_probs=197.4

Q ss_pred             CCCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCe
Q psy4393          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (247)
Q Consensus        13 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   92 (247)
                      +..+.....++.||.++|++++|+|++++|++|+.||.|++||..+++....+..|..+|.+++|+|+++++++++.|+.
T Consensus        41 ~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             cccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCce----EEEEEe-----------------------------------------cCCccEEEEEEcCCCCEEE
Q psy4393          93 LKIWELSSGK----CLKTLK-----------------------------------------GHSNYVFCCNFNPQSNLIV  127 (247)
Q Consensus        93 i~v~d~~~~~----~~~~~~-----------------------------------------~~~~~v~~~~~~~~~~~l~  127 (247)
                      +.+|+.....    ....+.                                         .+...+....+.+.+.+++
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            9999865421    111111                                         1233456677788889999


Q ss_pred             EeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCCCeEEEEECC
Q psy4393         128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSP  206 (247)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~s~  206 (247)
                      +++.|+.+++||+++++.+..+..|..+|++++|+|++.+|++|+.||.+++||+...+....+. ..+...+..++|+|
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999887766553 33456799999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         207 NGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       207 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ++++|++|+.||.|++||....+++.++..+..+
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~  314 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC
Confidence            9999999999999999999999988888776553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-35  Score=226.81  Aligned_cols=225  Identities=34%  Similarity=0.595  Sum_probs=193.9

Q ss_pred             CCCceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEEC---------------
Q psy4393          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---------------   78 (247)
Q Consensus        14 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~---------------   78 (247)
                      .|+...++++.+|.++|++++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+               
T Consensus         4 ~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             CCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            34444567889999999999999999999999999999999998877766666655555555554               


Q ss_pred             ---------------------------CCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC
Q psy4393          79 ---------------------------SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF  131 (247)
Q Consensus        79 ---------------------------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  131 (247)
                                                 |+++.+++++.|+.+++||+++++....+..+...+.++.++|++.++++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence                                       44556677778889999999999988889999999999999999999999999


Q ss_pred             CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC--------------------CEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG--------------------SLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      |+.+++|++++++....+..+...+.++.++|++                    .++++++.|+.+++||..+++.+..+
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999999999999999988753                    46889999999999999999887776


Q ss_pred             ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       192 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      . .+...|..++|+|++++|++++.||.|+|||.++.+++.++..+.+
T Consensus       244 ~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  290 (317)
T d1vyhc1         244 V-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH  290 (317)
T ss_dssp             E-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             e-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC
Confidence            5 3556899999999999999999999999999999988888876654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-34  Score=230.10  Aligned_cols=214  Identities=16%  Similarity=0.204  Sum_probs=179.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe--EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceE
Q psy4393          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  103 (247)
                      +.++|+|++|+|+|++||+|+.||.|++|+..+++  ....+.+|..+|.+++|+|++++|++++.|+.|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45789999999999999999999999999997765  4556789999999999999999999999999999999987654


Q ss_pred             E--EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeE----EEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         104 L--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       104 ~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      .  ..+..+...+.+++|+|+++.+++++.|+.+++|++.....    ......|...|.+++|+|++.+|++|+.|+.+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            3  34456778899999999999999999999999998865432    23345778899999999999999999999999


Q ss_pred             EEEeCCCceee-----------------eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         178 RIWDTASGQCL-----------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       178 ~v~d~~~~~~~-----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++||.......                 ......+...+..++|+|++++|++++.|+.|++||.+...++..+..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            99998653211                 111223456789999999999999999999999999998887777665544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=220.92  Aligned_cols=217  Identities=17%  Similarity=0.332  Sum_probs=192.3

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ......+|.+.|.+++|+|++++|++|+.||.|++||...  ......+..|...+..+.|+|++..+++++.++.+++|
T Consensus        89 ~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445568999999999999999999999999999999864  34556677888889999999999999999999999999


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCe
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  176 (247)
                      ++.+++.......+...+.+++|++++..+++++.|+.+++||+++++.+..+. +...|.+++|+|++.++++++.|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccc
Confidence            999999888888899999999999999999999999999999999998877664 6788999999999999999999999


Q ss_pred             EEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      +++||+.+++....  ..+...|..++|+|++++|++++.||.|++||....+++.......
T Consensus       248 i~i~d~~~~~~~~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  307 (337)
T d1gxra_         248 VEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS  307 (337)
T ss_dssp             EEEEETTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccccccccccccc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCC
Confidence            99999998875543  3456789999999999999999999999999999988877655433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-34  Score=225.37  Aligned_cols=209  Identities=20%  Similarity=0.324  Sum_probs=180.0

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLK   94 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~   94 (247)
                      ....++.+|.++|.+++|+|++++|++++.  +..+++|+..+++....+.+|...|.+++|+|+++. +++++.|+.|+
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence            345667889999999999999999998875  456999999888887888889999999999999875 78899999999


Q ss_pred             EEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-------CCCCCeEEEEECCCCCE
Q psy4393          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-------AHSDPVSAVHFNRDGSL  167 (247)
Q Consensus        95 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~  167 (247)
                      +||+++++....+..|...|.++.|+|+++++++++.|+.+++||++++.....+.       .|...|++++|+|++++
T Consensus       173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~  252 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK  252 (311)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence            99999999999999999999999999999999999999999999999887766543       46788999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      |++|+.||.|++||++++++++.+..........+.+.+++++|++++.||.|++||..
T Consensus       253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999998887754433222334445556789999999999999963

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=221.12  Aligned_cols=206  Identities=17%  Similarity=0.349  Sum_probs=182.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-----EEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~   99 (247)
                      +|...|.+++|+|+|++|++|+ ||.|+|||+..+.     ......+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            8999999999999999999987 8999999986542     222334678889999999999999999999999999987


Q ss_pred             Cc--eEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeE
Q psy4393         100 SG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (247)
Q Consensus       100 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  177 (247)
                      ..  +....+..+...+.++.|+|++.++++++.++.+++||+++++.......|...+.+++|++++..+++++.|+.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            43  4556677888889999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      ++||+++++.+..+  .+..++.+++|+|++++|++++.||.+++||.+.......
T Consensus       208 ~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         208 RSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             EEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred             cccccccceeeccc--ccccceEEEEEcccccccceeccccccccccccccccccc
Confidence            99999998877655  3456799999999999999999999999999988776544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-32  Score=211.94  Aligned_cols=205  Identities=35%  Similarity=0.655  Sum_probs=188.3

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|...+.++.|+|+++.+++++.|+.+++|+..++.....+..|...+.+++|+|+++++++++.|+.+++|+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence            33445678899999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCccEEEEEEcCC--------------------CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQ--------------------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA  158 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~  158 (247)
                      .+++....+..+...+.++.++|+                    +..+++++.|+.+++||+++++.+..+..|..+|.+
T Consensus       173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  252 (317)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence            999988888888888998888775                    347899999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEE
Q psy4393         159 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  224 (247)
                      ++++|++++|++|+.||.|++||+.+++.+..+. .+..+|++++|+|++++|++|+.||+|+|||
T Consensus       253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999998777664 4567899999999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-32  Score=212.85  Aligned_cols=210  Identities=19%  Similarity=0.296  Sum_probs=171.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      +...+.||.++|++++|+|++++|++|+.||.|++||+.+++....+. .|...|.+++|+|++.+ ++++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence            567788999999999999999999999999999999999888776664 57888999999999875 5566789999998


Q ss_pred             CCCceE-------------EEE--E------------------e-------cCCccEEEEEEcCCCCEEEEeeCCCCEEE
Q psy4393          98 LSSGKC-------------LKT--L------------------K-------GHSNYVFCCNFNPQSNLIVSGSFDESVRI  137 (247)
Q Consensus        98 ~~~~~~-------------~~~--~------------------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v  137 (247)
                      ......             ...  +                  .       .....+.+++++|+++++++|+.|+.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            643110             000  0                  0       01223567889999999999999999999


Q ss_pred             EECCCCeEEE-eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee--ccCCCCCeEEEEECCCCCEEEEE
Q psy4393         138 WDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       138 ~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~  214 (247)
                      ||+++++... ....|..+|.+++|+|++.+|++++.++.+++||+.++......  ...+..+|.+++|+|++++|++|
T Consensus       163 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEE
Confidence            9998877543 34467889999999999999999999999999999876654332  23456789999999999999999


Q ss_pred             EcCCeEEEEECCCcc
Q psy4393         215 TLDNTLKLWDSKVVT  229 (247)
Q Consensus       215 ~~dg~i~vwd~~~~~  229 (247)
                      +.||.|++||.+...
T Consensus       243 s~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         243 SLDNSVIVWNMNKPS  257 (299)
T ss_dssp             ETTSCEEEEETTCTT
T ss_pred             cCCCEEEEEECCCCC
Confidence            999999999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-32  Score=216.70  Aligned_cols=205  Identities=32%  Similarity=0.619  Sum_probs=174.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe------------------cccCCeEEEEECCCCCEEEE
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------------------GHKLGISDVAWSSDSRLLVS   86 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~   86 (247)
                      +|.+.|++++|+|+|++|++|+ |+.|++|++.+++....+.                  .+...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999986 8999999998877665543                  34556999999999999999


Q ss_pred             EcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCC
Q psy4393          87 GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (247)
Q Consensus        87 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  166 (247)
                      ++.||.|++||...++......+|...|.++.+++++..+++++.++.+++||.++.........+...+....+.+++.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999888777766655555444556889


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeec------cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcce
Q psy4393         167 LIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTP  230 (247)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  230 (247)
                      +|++++.|+.+.+||..+++....+.      ..+...|.+++|+|++++|++++.||.|++||.+....
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            99999999999999999887665542      23456799999999999999999999999999876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-32  Score=218.03  Aligned_cols=216  Identities=19%  Similarity=0.276  Sum_probs=177.7

Q ss_pred             ceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE--EecccCCeEEEEECCCCCEEEEEcCCCeEE
Q psy4393          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (247)
Q Consensus        17 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   94 (247)
                      +.....+.+|.++|.+++|+|++++|++|+.|+.|++|+..++.....  +.+|...|.+++|+|+++.+++++.|+.++
T Consensus        41 ~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcce
Confidence            345566789999999999999999999999999999999987665443  456778899999999999999999999999


Q ss_pred             EEECCCceE----EEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCC------------------eEEEeecCC
Q psy4393          95 IWELSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG------------------KCLKTLPAH  152 (247)
Q Consensus        95 v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------------------~~~~~~~~~  152 (247)
                      +|++.....    ......+...|.+++|+|++.++++|+.|+.+++||+...                  +.+.....|
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            998866432    2334467788999999999999999999999999998642                  244556678


Q ss_pred             CCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEE
Q psy4393         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAI  232 (247)
Q Consensus       153 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  232 (247)
                      ...+.+++|+|++++|++++.|+.|.+||+.+++.+..+. .+..+|.+++|+|++++|++| .|+.+++|+.+......
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeee-cccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceE
Confidence            8899999999999999999999999999999988777654 455689999999999877755 58877777665544433


Q ss_pred             EE
Q psy4393         233 IC  234 (247)
Q Consensus       233 ~~  234 (247)
                      .+
T Consensus       279 ~~  280 (371)
T d1k8kc_         279 SF  280 (371)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-32  Score=214.69  Aligned_cols=220  Identities=30%  Similarity=0.514  Sum_probs=183.4

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCC
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  100 (247)
                      .....|...|.+++|+|++++|++|+.||.|++|+...++......+|...|.++.|++++..+++++.++.+++||..+
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            34456888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee-------cCCCCCeEEEEECCCCCEEEEecC
Q psy4393         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-------PAHSDPVSAVHFNRDGSLIVSSSY  173 (247)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~  173 (247)
                      .........+...+....+.+++.++++++.|+.+++||.+++.....+       ..|..+|.+++|+|++++|++++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            8877776666555554445568899999999999999999988766554       356788999999999999999999


Q ss_pred             CCeEEEEeCCCceeeee-----------eccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         174 DGLCRIWDTASGQCLKT-----------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       174 dg~i~v~d~~~~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ||.+++||+++++....           ....+...|.+++|+|++++|++|+.||.|++||.++++++.++..+.+.
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~  352 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS  352 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            99999999986543221           12234567899999999999999999999999999999998888776553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-31  Score=206.15  Aligned_cols=206  Identities=24%  Similarity=0.480  Sum_probs=177.0

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe----EEEE-----------------------------
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKT-----------------------------   64 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~----~~~~-----------------------------   64 (247)
                      ....++..|...|.+++|+|+++++++|+.|+.+++|+.....    ....                             
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEE
T ss_pred             eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccc
Confidence            3456677899999999999999999999999999999854321    1111                             


Q ss_pred             ------------EecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC
Q psy4393          65 ------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD  132 (247)
Q Consensus        65 ------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  132 (247)
                                  ...+...+....+.+.+..+++++.|+.+++||+++++.+..+.+|...|.+++|+|++.++++|+.|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC
Confidence                        11123346677788889999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCE
Q psy4393         133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (247)
Q Consensus       133 ~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  210 (247)
                      +.+++||++....+..+  ..+...+.+++|+|++.+|++|+.||.|++||+.+++.+..+. .|..+|.+++|+|++++
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCE
Confidence            99999999998876654  3556779999999999999999999999999999998877664 45678999999999999


Q ss_pred             EEEEEcCCeEEEEE
Q psy4393         211 ILAATLDNTLKLWD  224 (247)
Q Consensus       211 l~~~~~dg~i~vwd  224 (247)
                      |++|+.||.|+|||
T Consensus       327 l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         327 VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEccCCEEEEeC
Confidence            99999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-31  Score=205.32  Aligned_cols=219  Identities=23%  Similarity=0.342  Sum_probs=177.0

Q ss_pred             EEEEecCC-CCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCe--------EEEEEecccCCeEEEEECCCCCEEEEEc
Q psy4393          20 KFTLAGHT-KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKLGISDVAWSSDSRLLVSGS   88 (247)
Q Consensus        20 ~~~~~~h~-~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~   88 (247)
                      ...+.+|. ..|++++|+|  +|++|++|+.||.|++||...+.        ....+..+..+|.+++|+++++.+++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            34556774 6799999998  56799999999999999975432        1223456778899999999999988775


Q ss_pred             C--CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCE-EEEeeCCCCEEEEECCCCeEEEee---cCCCCCeEEEEEC
Q psy4393          89 D--DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFN  162 (247)
Q Consensus        89 ~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~  162 (247)
                      .  ++.+.+|+.++++.+..+.+|...+.++.|+|++.. +++++.|+.+++||.+..+.....   ..|...|.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            4  678999999999999999999999999999998865 678999999999999887765544   4567789999999


Q ss_pred             CC-CCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC---CCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         163 RD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       163 ~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      |+ +.++++++.|+.|++||+++++.+..+.. +..++..+.|+   |++++|++++.|+.|+|||.++.+++..+..+.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             cccceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            96 67899999999999999999988777643 33333333333   689999999999999999999998887766544


Q ss_pred             c
Q psy4393         239 N  239 (247)
Q Consensus       239 ~  239 (247)
                      .
T Consensus       294 ~  294 (325)
T d1pgua1         294 Q  294 (325)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=196.68  Aligned_cols=203  Identities=18%  Similarity=0.301  Sum_probs=166.9

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEe--CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCE-EEEEcCCCeEEEEEC
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWEL   98 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~   98 (247)
                      .+..|.++|.+++|+++++++++++  .++.+++|+..+++....+.+|...|.+++|+|++.. +++++.|+.+++||.
T Consensus       110 ~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  189 (325)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             ccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccc
Confidence            4456889999999999999988765  4678999999888888899999999999999998765 678999999999999


Q ss_pred             CCceEEEEEe---cCCccEEEEEEcCC-CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC---CCCCEEEEe
Q psy4393          99 SSGKCLKTLK---GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN---RDGSLIVSS  171 (247)
Q Consensus        99 ~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~  171 (247)
                      .+.+......   .+...|.+++|+|+ +.++++++.|+.|++||+++++.+..+..|..++..+.|+   |++++|+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEE
T ss_pred             cccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEE
Confidence            8877655543   45677999999996 6889999999999999999999999988887766554444   688999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCC-CCCeEE--EEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDD-NPPVSF--VKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~--~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +.|+.|++||+.+++.++.+..+. ...+..  +.+.++ .+|++++.||.|+|||+
T Consensus       270 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            999999999999999887765432 222333  344443 47899999999999995

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-29  Score=193.34  Aligned_cols=208  Identities=34%  Similarity=0.640  Sum_probs=164.6

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEEC
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~   98 (247)
                      ....+.+|.+.|.+ +++++|++|++|+.||.|++||..+++....+.+|...|.+++|+|+  .+++++.|+.+++|+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            34567899999865 46678999999999999999999999999999999999999999874  8999999998888886


Q ss_pred             CCceEEEE------------------------------------------------------------------------
Q psy4393          99 SSGKCLKT------------------------------------------------------------------------  106 (247)
Q Consensus        99 ~~~~~~~~------------------------------------------------------------------------  106 (247)
                      ........                                                                        
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            54221100                                                                        


Q ss_pred             --------EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         107 --------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       107 --------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                              +.++...  ...+.+++..+++++.||.|++||++.++.+..+..|...+.++.+++  ++|++++.|+.|+
T Consensus       165 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~  240 (342)
T d2ovrb2         165 ETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVK  240 (342)
T ss_dssp             GGTEEEEEECCCSSC--EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEE
T ss_pred             ccceeeEEEcCcccc--cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEE
Confidence                    0011111  223445678899999999999999999999999999999998887754  6899999999999


Q ss_pred             EEeCCCceeeeeeccC--CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                      +||....+....+...  +...+.++.++  ++++++|+.||.|+|||.++++.+..+.
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            9999988766655433  34455556554  5799999999999999999988766553

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-28  Score=196.66  Aligned_cols=216  Identities=20%  Similarity=0.274  Sum_probs=162.9

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCe-------EEE-------------------------EE-e-c--
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEK-------------------------TI-S-G--   67 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~-------~~~-------------------------~~-~-~--   67 (247)
                      ++|.+.|.++++++  +++++++.|+.|++||.....       ...                         .+ . +  
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            58999999999864  689999999999999853211       000                         00 0 0  


Q ss_pred             -----------------------------ccCCeEEEEECCC-----CCEEEEEcCCCeEEEEECCCce-----------
Q psy4393          68 -----------------------------HKLGISDVAWSSD-----SRLLVSGSDDKTLKIWELSSGK-----------  102 (247)
Q Consensus        68 -----------------------------~~~~v~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~~~-----------  102 (247)
                                                   +...+..++|.++     +.++++++.|+.+++|++....           
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence                                         1112334455443     3567888888999999864210           


Q ss_pred             ----EEEE---EecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEee------cCCCCCeEEEEECCCCCEEE
Q psy4393         103 ----CLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL------PAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       103 ----~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~  169 (247)
                          ....   ...+...+.+++|+|++ ++++|+.|+.|++||+++++.+..+      ..|..+|.+++|+|++++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  247 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA  247 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred             cceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence                0011   11233457789999987 8899999999999999998876544      45788999999999999999


Q ss_pred             EecCCC---eEEEEeCCCceeeeeec------------cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         170 SSSYDG---LCRIWDTASGQCLKTLI------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       170 ~~~~dg---~i~v~d~~~~~~~~~~~------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      +|+.|+   .|++||+.+++.+..+.            ..|...|++++|+|++++|++++.|++|+|||.++++++-++
T Consensus       248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence            999886   58999999988766553            245677999999999999999999999999999999999898


Q ss_pred             ccCCcccc
Q psy4393         235 STPLNLNY  242 (247)
Q Consensus       235 ~~~~~~~~  242 (247)
                      ..+.++.+
T Consensus       328 ~gH~~~v~  335 (393)
T d1sq9a_         328 NMHCDDIE  335 (393)
T ss_dssp             ECCGGGCS
T ss_pred             CCcCCccc
Confidence            88776544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-27  Score=186.95  Aligned_cols=209  Identities=28%  Similarity=0.601  Sum_probs=161.7

Q ss_pred             EEEEEecCCCCe-EEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          19 LKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        19 ~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      .+.+|.||...| +|+.|  ++++|++|+.||.|++||..+++....+.+|..+|.+++|+|+ ..|++++.|+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            367899998886 55555  6889999999999999999999999999999999999999985 5899999999999999


Q ss_pred             CCCceEEEEEecCCc--cEEEEEEcCC-----------------------------------------------------
Q psy4393          98 LSSGKCLKTLKGHSN--YVFCCNFNPQ-----------------------------------------------------  122 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~--~v~~~~~~~~-----------------------------------------------------  122 (247)
                      ....+..........  ......+.++                                                     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            887654433321111  1122223333                                                     


Q ss_pred             ----------CCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy4393         123 ----------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (247)
Q Consensus       123 ----------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (247)
                                +++++++..|+.+++||+++++.+.....+...+.++.++|++..+++++.|+.+++||..++..+..+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence                      4455555555566666666665555666667778889999999999999999999999999988776654


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       193 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                       .+...|.++++++  ++|++++.||.|++||.++......
T Consensus       241 -~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         241 -GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             -CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             -ccccccccccccc--ceeeeeecccccccccccccceecc
Confidence             4566788888874  6999999999999999998766544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.2e-27  Score=184.53  Aligned_cols=201  Identities=18%  Similarity=0.263  Sum_probs=157.0

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE-------------EE--------------------EE-----
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------------EK--------------------TI-----   65 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~-------------~~--------------------~~-----   65 (247)
                      .+|...|++++|+|+|+++ +++.|+.+++|+......             ..                    ..     
T Consensus        52 ~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~  130 (299)
T d1nr0a2          52 DVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  130 (299)
T ss_dssp             CSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             CCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4688999999999999755 556799999998532100             00                    00     


Q ss_pred             --ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE-EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC
Q psy4393          66 --SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (247)
Q Consensus        66 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (247)
                        ......+.+++|+|+++.+++++.|+.+++||+++++... ....|...|.+++|+|++.++++++.++.+++||+.+
T Consensus       131 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              0122346788999999999999999999999998776443 3446778899999999999999999999999999987


Q ss_pred             CeEEE---eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee--ccCCCCCeEEEEECCCCCEEEEEEcC
Q psy4393         143 GKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLD  217 (247)
Q Consensus       143 ~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d  217 (247)
                      +....   .+..|..+|++++|+|++.+|++|+.||.|++||+.+++.....  ..+....+..+.| +++++|++++.|
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence            76543   34568889999999999999999999999999999876543322  2233456776655 567899999999


Q ss_pred             CeEEEEECC
Q psy4393         218 NTLKLWDSK  226 (247)
Q Consensus       218 g~i~vwd~~  226 (247)
                      |.|++||+.
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999963

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.3e-29  Score=190.51  Aligned_cols=197  Identities=19%  Similarity=0.238  Sum_probs=148.6

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d   97 (247)
                      .+..++.+|.++|++++|+|    |++|+.||.|++||..++     ...|...|.++.+++++ .+++++.|+.+++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            35678899999999999987    899999999999997543     23455555555555432 344455555544443


Q ss_pred             --------------------------------------------------------------------------CCCceE
Q psy4393          98 --------------------------------------------------------------------------LSSGKC  103 (247)
Q Consensus        98 --------------------------------------------------------------------------~~~~~~  103 (247)
                                                                                                +...+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence                                                                                      222111


Q ss_pred             EEEEe-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEE-eecCCCCCeEEEEECCC----------CCEEEEe
Q psy4393         104 LKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRD----------GSLIVSS  171 (247)
Q Consensus       104 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~  171 (247)
                      ...+. .+...+.+++|+|++.+|++|+.||.|++||+.+++... .+..|..+|.+++|+|.          +.++++|
T Consensus       154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence            11111 234568899999999999999999999999999887654 46788899999999874          4689999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +.|+.|++||+.++.........+...|.+++|+|++ .|++++.||.|++||.
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999999987554445556677889999999986 5889999999999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-26  Score=180.05  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=152.7

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEE---EEEecccCCeEEEEECCCC-CEEEEEcCCCeEEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWE   97 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d   97 (247)
                      -..+|...|++++|+|++++|++|+.||.|++||+..+...   ....+|..+|.+++|+|++ ..|++|+.|+.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            34689999999999999999999999999999998654332   2234688899999999864 5789999999999999


Q ss_pred             CCCceEEEEEecCCc-------------------------------------------------cEEEEEEcCCCCEEEE
Q psy4393          98 LSSGKCLKTLKGHSN-------------------------------------------------YVFCCNFNPQSNLIVS  128 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~-------------------------------------------------~v~~~~~~~~~~~l~~  128 (247)
                      ............+..                                                 ......+.+.+..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            876433222211100                                                 0112234455667777


Q ss_pred             eeCCCCEEEEECCCCeEE---EeecCCCCCeEEEEEC-CCCCEEEEecCCCeEEEEeCCCceeeee------e-------
Q psy4393         129 GSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKT------L-------  191 (247)
Q Consensus       129 ~~~d~~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~------~-------  191 (247)
                      ++.|+.+++||++.....   ...........+..+. .++..+++++.||.+.+|+.........      .       
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence            788888888887655422   1222333445555554 4677899999999999998764321110      0       


Q ss_pred             -ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         192 -IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       192 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                       ...+...+++++|+|++++|++|+.||.|+|||.+..+.+..+..
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence             112345688999999999999999999999999999887766543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-25  Score=175.03  Aligned_cols=208  Identities=24%  Similarity=0.473  Sum_probs=154.7

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCC--eEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      ....++.+|.++|.+++|+|+ .+|++|+.|+.|++|+................  .....+.+++..+++++.|+.|++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEE
Confidence            456678899999999999985 57899999999999998876655443322222  233444555555666666666666


Q ss_pred             EECC---------------------------------------------------------------CceEEEEEecCCc
Q psy4393          96 WELS---------------------------------------------------------------SGKCLKTLKGHSN  112 (247)
Q Consensus        96 ~d~~---------------------------------------------------------------~~~~~~~~~~~~~  112 (247)
                      ||+.                                                               +++.+.....+..
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc
Confidence            6543                                                               3333333444555


Q ss_pred             cEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy4393         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (247)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (247)
                      .+.++.++|++..+++++.|+.+++||++++..+..+..|..+|.++++++  ++|++++.||.|++||+.+........
T Consensus       203 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  280 (355)
T d1nexb2         203 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYH  280 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceecccc
Confidence            677888999999999999999999999999999999999999999999864  689999999999999998876544332


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       193 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                        +........+++++++|++| .||.|+|||.++++++
T Consensus       281 --~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         281 --HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             --CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             --cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence              22222334567787776665 5999999999887765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-25  Score=179.15  Aligned_cols=166  Identities=23%  Similarity=0.369  Sum_probs=133.9

Q ss_pred             CCCCeEEEEECCC-----CCEEEEEeCCCeEEEEecCCC------------e---EEEEE---ecccCCeEEEEECCCCC
Q psy4393          26 HTKAVSSVKFSPN-----GEWLASSSADKLIKIWGAYDG------------K---FEKTI---SGHKLGISDVAWSSDSR   82 (247)
Q Consensus        26 h~~~v~~~~~s~~-----~~~l~~~~~dg~v~iw~~~~~------------~---~~~~~---~~~~~~v~~~~~~~~~~   82 (247)
                      +...+..++|.++     +.++++++.||.+++|++...            .   .....   ..+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            3455677777765     357889999999999986321            0   01111   1223447889999987 


Q ss_pred             EEEEEcCCCeEEEEECCCceEEEEE------ecCCccEEEEEEcCCCCEEEEeeCCCC---EEEEECCCCeEEEeec---
Q psy4393          83 LLVSGSDDKTLKIWELSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDES---VRIWDVRTGKCLKTLP---  150 (247)
Q Consensus        83 ~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~~---  150 (247)
                      ++++|+.|+.|++||+.+++.+..+      .+|...|.+++|+|++++|++|+.|+.   |++||+++++.+..+.   
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            8899999999999999998776544      457889999999999999999998874   8999999988776653   


Q ss_pred             ----------CCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy4393         151 ----------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (247)
Q Consensus       151 ----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (247)
                                +|.+.|++++|+|++++|++|+.|+.|++||+.+++++..+.
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence                      688899999999999999999999999999999999887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.9e-24  Score=160.62  Aligned_cols=207  Identities=24%  Similarity=0.495  Sum_probs=166.6

Q ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        23 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      ..+|...|+|+.|  +|++|++|+.||.|++||..+++....+.+|..+|.+++|  ++++|++++.|+.+++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            4578899998765  7899999999999999999999999999999999999887  57899999999999999999887


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCe---EEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                      ............  ..+.+....++++..++.+.+||.....   ....+..|...+....+.+  ..+++++.|+.+++
T Consensus        87 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~  162 (293)
T d1p22a2          87 MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV  162 (293)
T ss_dssp             EEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEE
T ss_pred             cccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceee
Confidence            766655444433  3445566789999999999999998654   3445567777887777654  56788899999999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCcc
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNL  240 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  240 (247)
                      ||+++++.+..+. .+...+..+.++  +.++++++.||.|++||.+...++.....+..+
T Consensus       163 ~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  220 (293)
T d1p22a2         163 WNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL  220 (293)
T ss_dssp             EETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee
Confidence            9999988776654 334456666554  578999999999999999998888777665543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-24  Score=169.42  Aligned_cols=187  Identities=28%  Similarity=0.581  Sum_probs=155.7

Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccE
Q psy4393          35 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV  114 (247)
Q Consensus        35 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v  114 (247)
                      +.+....++.++.|+.+++|+.........+.+|...+..+.  +++..+++++.|+.|++||++.++.+..+..|...+
T Consensus       143 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v  220 (342)
T d2ovrb2         143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  220 (342)
T ss_dssp             EEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             eccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecccccce
Confidence            334556788889999999999988888888888877666554  467899999999999999999999999999999888


Q ss_pred             EEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC---CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy4393         115 FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (247)
                      .++.+++  +++++++.|+.|++||+...+....+..   |...+.++.++  +.++++|+.||.|++||+++++.++.+
T Consensus       221 ~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         221 SGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            8877764  6999999999999999998887766654   44566666664  578999999999999999999887766


Q ss_pred             cc----CCCCCeEEEEECCCCCEEEEEEcCC----eEEEEECCC
Q psy4393         192 ID----DDNPPVSFVKFSPNGKYILAATLDN----TLKLWDSKV  227 (247)
Q Consensus       192 ~~----~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~  227 (247)
                      ..    .+...|.+++|+|++.+|++|+.||    .|++||.+.
T Consensus       297 ~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            42    3456799999999999999999888    499999764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8.6e-25  Score=172.02  Aligned_cols=157  Identities=13%  Similarity=0.148  Sum_probs=133.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  102 (247)
                      +|...|.+++|+|||++|++++.++  .|++||..+++. ..+..|...+.+++|+|++++|++++.++.+++|+..+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            6899999999999999998766553  789999977655 4566788899999999999999999999999999999999


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEee----------CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGS----------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  172 (247)
                      ....+..+...+.+++|+|++++|+.+.          .++.+++||+.+++... +..+...+..+.|+|+|+.|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe
Confidence            8888888888888999999999998653          34468999999887544 344566788899999999999999


Q ss_pred             CCCeEEEEeCC
Q psy4393         173 YDGLCRIWDTA  183 (247)
Q Consensus       173 ~dg~i~v~d~~  183 (247)
                      .++.+.+||..
T Consensus       198 ~~~~~~~~d~~  208 (360)
T d1k32a3         198 YRSLDPSPDRV  208 (360)
T ss_dssp             SCCCCCEECSS
T ss_pred             CCCceEccccc
Confidence            88888888753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.9e-25  Score=173.98  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=160.7

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCC--eEEEEECCCceEEEEEe
Q psy4393          32 SVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLK  108 (247)
Q Consensus        32 ~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~  108 (247)
                      .-.||| ||+++|+++ +|.|++|+...+...+.  +|...|.+++|+|||+.|++++.+.  .+++||.++++. ..+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEee
Confidence            356999 999999876 57999999987766543  6888999999999999998776553  799999988765 4567


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEec----------CCCeEE
Q psy4393         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS----------YDGLCR  178 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~  178 (247)
                      .+...+.+++|+|+++++++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            7888999999999999999999999999999999998888888888899999999999998643          345689


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      +||+.+++.....  .+...+..++|+|||++|++++.++.+++||....
T Consensus       163 v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         163 VYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            9999987654432  34456788999999999999999999999997654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-24  Score=162.29  Aligned_cols=196  Identities=31%  Similarity=0.667  Sum_probs=152.6

Q ss_pred             eEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEE--------------------------------
Q psy4393          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--------------------------------   65 (247)
Q Consensus        18 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--------------------------------   65 (247)
                      ....++.+|.++|++++|  ++++|++|+.|+.+++|+...+......                                
T Consensus        46 ~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA  123 (293)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred             cEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecc
Confidence            355678899999999987  5789999999999999997655332211                                


Q ss_pred             -----------ecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCC
Q psy4393          66 -----------SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  134 (247)
Q Consensus        66 -----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (247)
                                 ..|...+..+.+.  ...+++++.|+.+++||..+++.+..+.++...+..+.++  +..+++++.|+.
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~  199 (293)
T d1p22a2         124 SPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT  199 (293)
T ss_dssp             SSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE
Confidence                       1122233333332  3567788899999999999999888898888888777665  568999999999


Q ss_pred             EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCce---------eeeeeccCCCCCeEEEEEC
Q psy4393         135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---------CLKTLIDDDNPPVSFVKFS  205 (247)
Q Consensus       135 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~~v~~~~~s  205 (247)
                      |++||+++...+.....+...+..  +.+++.+|++++.||.|++||+....         .+.. ...|...|.+++|+
T Consensus       200 i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~H~~~V~~v~~d  276 (293)
T d1p22a2         200 IRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT-LVEHSGRVFRLQFD  276 (293)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE-ECCCSSCCCCEEEC
T ss_pred             EEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEE-ecCCCCCEEEEEEc
Confidence            999999999999988888888765  45678899999999999999975422         2222 34456778888885


Q ss_pred             CCCCEEEEEEcCCeEEEEE
Q psy4393         206 PNGKYILAATLDNTLKLWD  224 (247)
Q Consensus       206 ~~~~~l~~~~~dg~i~vwd  224 (247)
                        +++|++++.||+|+|||
T Consensus       277 --~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         277 --EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --SSCEEECCSSSEEEEEC
T ss_pred             --CCEEEEEecCCEEEEeC
Confidence              57899999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=2.9e-22  Score=162.08  Aligned_cols=216  Identities=11%  Similarity=0.119  Sum_probs=151.3

Q ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEE--Ee---cccCCeEEEEECCCCCEEEE-EcCCCeEE
Q psy4393          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--IS---GHKLGISDVAWSSDSRLLVS-GSDDKTLK   94 (247)
Q Consensus        21 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~---~~~~~v~~~~~~~~~~~l~~-~~~d~~i~   94 (247)
                      .++..| ..+..++|+|||++|++++.|+.+++||+.+++....  +.   +|...+.+++|+|||+++++ +..++.+.
T Consensus        56 ~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          56 KVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             EEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence            455544 4689999999999999999999999999988764432  22   34444566778899998754 45789999


Q ss_pred             EEECCCceEEEEEec-------------------------------------------------------CCccEEEEEE
Q psy4393          95 IWELSSGKCLKTLKG-------------------------------------------------------HSNYVFCCNF  119 (247)
Q Consensus        95 v~d~~~~~~~~~~~~-------------------------------------------------------~~~~v~~~~~  119 (247)
                      +||..++.....+..                                                       +...+..+.+
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW  214 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence            999877544322210                                                       1122346778


Q ss_pred             cCCCCEEEEeeC-CCCEEEEECCCCeE-----------------------------------------------------
Q psy4393         120 NPQSNLIVSGSF-DESVRIWDVRTGKC-----------------------------------------------------  145 (247)
Q Consensus       120 ~~~~~~l~~~~~-d~~i~v~d~~~~~~-----------------------------------------------------  145 (247)
                      +|++++++++.. +..+.+++..+++.                                                     
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            888887766653 33455666554332                                                     


Q ss_pred             -EEeecCCCCCeEEEEECCCCCEEEE-------ecCCCeEEEEeCCCceeeeeec--------cCCCCCeEEEEECCCCC
Q psy4393         146 -LKTLPAHSDPVSAVHFNRDGSLIVS-------SSYDGLCRIWDTASGQCLKTLI--------DDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       146 -~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~  209 (247)
                       ...+..|...+..++|+|++++|++       +..+++|++||+.+++....+.        ..+...+..++|||||+
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence             2234455566788999999999995       4457899999999887654432        23345688899999999


Q ss_pred             EEEEE-----EcCCeEEEEECCCcceEEEEccC
Q psy4393         210 YILAA-----TLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       210 ~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                      +++.+     +.+|.|+|||.++.+...++..+
T Consensus       375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             EEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence            77543     35789999999999877665543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=9.6e-20  Score=139.44  Aligned_cols=206  Identities=17%  Similarity=0.210  Sum_probs=155.7

Q ss_pred             CCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCceEE
Q psy4393          27 TKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~  104 (247)
                      ...+..++|+|||++|+ ++..++.|++||..+++....+..+. .+..+.|++++..++ ++..++.+.+|+..+++..
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA  109 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceee
Confidence            35678999999999875 56678999999999998888877654 468899999998654 5566789999999998887


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCCCeEEEeecCC-------------------------------
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKCLKTLPAH-------------------------------  152 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~-------------------------------  152 (247)
                      ..+..+. ...++.++|++..++. +..++.+.+|+..+...+..+..+                               
T Consensus       110 ~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (301)
T d1l0qa2         110 GTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (301)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc
Confidence            7776544 4677889999887754 455677888988776544332111                               


Q ss_pred             ----------CCCeEEEEECCCCCEEEEec---CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEE-EEEcCC
Q psy4393         153 ----------SDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDN  218 (247)
Q Consensus       153 ----------~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg  218 (247)
                                ......+++++++..++++.   .++.|.+||+.+++....+..  ...+..++|+|||++|+ +++.|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             TTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCC
Confidence                      11234567888888776554   346899999999887766543  23568899999999875 666789


Q ss_pred             eEEEEECCCcceEEEEcc
Q psy4393         219 TLKLWDSKVVTPAIICST  236 (247)
Q Consensus       219 ~i~vwd~~~~~~~~~~~~  236 (247)
                      +|++||.++++.+.++..
T Consensus       267 ~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         267 TVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEeC
Confidence            999999999887777653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.9e-20  Score=145.46  Aligned_cols=209  Identities=11%  Similarity=0.076  Sum_probs=159.1

Q ss_pred             ecCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCeEEEEEecccC-----CeEEEEECCCCCEEEEEc---------
Q psy4393          24 AGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSRLLVSGS---------   88 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~---------   88 (247)
                      ..+...+.+++|+|||++++ +++.++.|.+||..+++....+..+..     .+..++|+|+++.++++.         
T Consensus        30 ~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            34556788999999999874 567899999999999988877765432     345689999999988775         


Q ss_pred             ---CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecC--------------
Q psy4393          89 ---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--------------  151 (247)
Q Consensus        89 ---~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------  151 (247)
                         .+..+.+||..+++....+... ..+..+.++|+++++++++.  .+.+||..+++....+..              
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             ccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcc
Confidence               3567889999999887777654 44677899999999988764  467888776544332211              


Q ss_pred             ----------------------------------------------------CCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         152 ----------------------------------------------------HSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       152 ----------------------------------------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                                                                          +......+.++|++.+++.+  ++.+.+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v  264 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEE
Confidence                                                                11223445667777777654  588999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ||+.+++.+..+...  ..+.+++|+|||++|++++.||.|+|||..+.+.+..+..|..
T Consensus       265 ~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         265 FDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             EECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCCC
Confidence            999999888776443  3467899999999999999999999999999988877765443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.2e-21  Score=148.34  Aligned_cols=149  Identities=19%  Similarity=0.306  Sum_probs=122.9

Q ss_pred             EEECCCCCEEEEEeCCC-eEEEEecCCCeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE-EEec
Q psy4393          33 VKFSPNGEWLASSSADK-LIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLKG  109 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~  109 (247)
                      .+++++++.+++++.++ .+++|+..+......+. .+...+++++|+|++.+|++++.||.|++||+.++.... .+..
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  203 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF  203 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence            45667778887777665 79999986655444443 356779999999999999999999999999999887554 3567


Q ss_pred             CCccEEEEEEcCC----------CCEEEEeeCCCCEEEEECCC-CeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEE
Q psy4393         110 HSNYVFCCNFNPQ----------SNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (247)
Q Consensus       110 ~~~~v~~~~~~~~----------~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  178 (247)
                      |...|.+++|+|.          +.++++|+.|+.|++||++. .+.+..+.+|...|++++|+|++ .|++++.|+.|+
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~  282 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK  282 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence            8889999999874          46899999999999999976 45667778899999999999986 588899999999


Q ss_pred             EEeC
Q psy4393         179 IWDT  182 (247)
Q Consensus       179 v~d~  182 (247)
                      +|++
T Consensus       283 iW~i  286 (287)
T d1pgua2         283 RWNV  286 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.2e-20  Score=151.26  Aligned_cols=196  Identities=14%  Similarity=0.035  Sum_probs=151.5

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce--EEEEEe---cCCccE
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLK---GHSNYV  114 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---~~~~~v  114 (247)
                      -++++.+.+|.|.+||..+++.+..+..+. .+..++|+|||+++++++.|+.+++||+.+++  ....++   .+...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            345788899999999999999999998664 68999999999999999999999999998765  333333   233445


Q ss_pred             EEEEEcCCCCEE-EEeeCCCCEEEEECCCCeEEEeecCC-----------CCCeEEEEECCCCCEE-EEecCCCeEEEEe
Q psy4393         115 FCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSLI-VSSSYDGLCRIWD  181 (247)
Q Consensus       115 ~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d  181 (247)
                      ....|+|||+++ +++..++.+++||..+++.+..+..+           ......+.++|++..+ ++...++.+.+||
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            555678899976 67888999999999999887765433           2345678899999866 4566779999999


Q ss_pred             CCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEEcc
Q psy4393         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~  236 (247)
                      ..+.+...............++|+|||+++++++. ++.+.++|.........+..
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            98876554333334456788999999999888775 56899999988776555433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=4.4e-21  Score=148.60  Aligned_cols=201  Identities=13%  Similarity=0.113  Sum_probs=139.1

Q ss_pred             ecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCeEEEEEecccCC-------------------------------
Q psy4393          24 AGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLG-------------------------------   71 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-------------------------------   71 (247)
                      .+|..+|.+++|+|++ .+|++|+.||.|++|+............+...                               
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccc
Confidence            3699999999999865 57899999999999998654332222111111                               


Q ss_pred             ------------------eEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE---EEecCCccEEEEEE-cCCCCEEEEe
Q psy4393          72 ------------------ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK---TLKGHSNYVFCCNF-NPQSNLIVSG  129 (247)
Q Consensus        72 ------------------v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~-~~~~~~l~~~  129 (247)
                                        ...+.+.+.+..+++++.|+.+++||+.......   ..........+..+ ..++..++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             TTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee
Confidence                              1122334455566667777777777765443211   11222233444444 4567889999


Q ss_pred             eCCCCEEEEECCCCeEE---------E------eecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy4393         130 SFDESVRIWDVRTGKCL---------K------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD  194 (247)
Q Consensus       130 ~~d~~i~v~d~~~~~~~---------~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  194 (247)
                      +.||.+.+|+.......         .      ....|...+.+++|+|++.+|++|+.||.|++||+.+++.+..+...
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~  292 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            99999999987643211         1      11244567899999999999999999999999999999887766443


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         195 DNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       195 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      +  ....++|+|++++|++++.|+.+++|..-
T Consensus       293 ~--~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         293 N--EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             S--SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             C--CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            3  34567889999999999999998888653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=2.7e-20  Score=145.10  Aligned_cols=205  Identities=13%  Similarity=0.088  Sum_probs=145.0

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecC
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGH  110 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~  110 (247)
                      ++|++++++|++++.++.|.+||..+++....+.. +...+.+++|+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            57899999999999999999999999998887763 45567899999999987 55667899999999998877655432


Q ss_pred             Cc------cEEEEEEcCCCCEEEEee------------CCCCEE------------------------------------
Q psy4393         111 SN------YVFCCNFNPQSNLIVSGS------------FDESVR------------------------------------  136 (247)
Q Consensus       111 ~~------~v~~~~~~~~~~~l~~~~------------~d~~i~------------------------------------  136 (247)
                      ..      .+..+.++|+|+.+++++            .+..+.                                    
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            11      123456777776665443            122333                                    


Q ss_pred             -----EEECCCCeEEEeecC------------------------------------------------------------
Q psy4393         137 -----IWDVRTGKCLKTLPA------------------------------------------------------------  151 (247)
Q Consensus       137 -----v~d~~~~~~~~~~~~------------------------------------------------------------  151 (247)
                           +||+.+++.+..+..                                                            
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                 333333322222111                                                            


Q ss_pred             --------CCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEE
Q psy4393         152 --------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (247)
Q Consensus       152 --------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  223 (247)
                              +...+..+.+++++..++... ++.+.+||..+++.+..+...  ..+..++|+|||++|++++.||.|+||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~--~~~~~va~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC--CCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence                    111223344555555555443 457999999999877766433  357789999999999999999999999


Q ss_pred             ECCCcceEEEEccCCcc
Q psy4393         224 DSKVVTPAIICSTPLNL  240 (247)
Q Consensus       224 d~~~~~~~~~~~~~~~~  240 (247)
                      |.++.+.+..+..|..+
T Consensus       319 D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             ETTTTEEEEEEECSSSC
T ss_pred             ECccCCEEEEEECCCCC
Confidence            99999999888876643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=8.3e-18  Score=135.62  Aligned_cols=201  Identities=12%  Similarity=0.064  Sum_probs=145.9

Q ss_pred             ECCCCC--EEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE--EEe--
Q psy4393          35 FSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK--TLK--  108 (247)
Q Consensus        35 ~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~--  108 (247)
                      ++.+.+  ++++...||.|++||..+++.+..+..+. .+..++|+|||+++++++.|+.+++||+.+++...  .+.  
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            555533  45678889999999999999999988764 58999999999999999999999999999876432  332  


Q ss_pred             -cCCccEEEEEEcCCCCEEEE-eeCCCCEEEEECCCCeEEEeecCCCC-----------CeEEEEECCCCCEEEEec-CC
Q psy4393         109 -GHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSS-YD  174 (247)
Q Consensus       109 -~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~-~d  174 (247)
                       ++...+..+.|+|+|+++++ +..++.+++||..++..+.....+..           ....+..++++..++... ..
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence             33444566678899998755 45789999999999887766654432           334556667766555443 34


Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECCCcceEEEEcc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~  236 (247)
                      +.+.+++.................+..++|+|++++++++.. ++.+.+++............
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            566666665544333222234556788999999999988774 56899999988877655543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5e-17  Score=125.78  Aligned_cols=197  Identities=14%  Similarity=0.143  Sum_probs=148.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCeEEEEEecc--cCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecCCc----
Q psy4393          40 EWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSN----  112 (247)
Q Consensus        40 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~----  112 (247)
                      +++++++.|+.|++||..+++....+..+  ...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999988887653  3457789999999987 5667899999999999998877765432    


Q ss_pred             -cEEEEEEcCCCCEEEEeeC------------CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEE
Q psy4393         113 -YVFCCNFNPQSNLIVSGSF------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (247)
Q Consensus       113 -~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  179 (247)
                       .+..+.++|+++.++.+..            +..+.+||..+++....+..+ ..+..++++|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence             2346789999999887763            567899999999888777654 456788999999999888654  567


Q ss_pred             EeCCCceeeeeec-----------------------------------------------------------------cC
Q psy4393         180 WDTASGQCLKTLI-----------------------------------------------------------------DD  194 (247)
Q Consensus       180 ~d~~~~~~~~~~~-----------------------------------------------------------------~~  194 (247)
                      ||..+++....+.                                                                 ..
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            8877654332210                                                                 01


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCccc
Q psy4393         195 DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLNLN  241 (247)
Q Consensus       195 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  241 (247)
                      .......++++|++.+++.+  ++.|++||.++.+.+.....+..+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~  283 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYY  283 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCC
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEE
Confidence            11223456778888887765  5899999999988777766554443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=4.9e-17  Score=131.36  Aligned_cols=207  Identities=11%  Similarity=0.002  Sum_probs=142.7

Q ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeE--EEEEe---cccCCeEEEEECCCCCEE-EEEcCCCe
Q psy4393          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTIS---GHKLGISDVAWSSDSRLL-VSGSDDKT   92 (247)
Q Consensus        19 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l-~~~~~d~~   92 (247)
                      ...++..| ..+..++|+|||+++++++.||.+++||+.+++.  ...+.   .+...+.+..|+|||+++ +++..++.
T Consensus        54 v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2          54 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCe
Confidence            33445544 4699999999999999999999999999877653  33333   333445556778899986 67788999


Q ss_pred             EEEEECCCceEEEEEecC-----------CccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCCeEEEeec-CCCCCeEEE
Q psy4393          93 LKIWELSSGKCLKTLKGH-----------SNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAV  159 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~  159 (247)
                      +++||..+++.+..+..+           ......+.++|++..++ +...++.+.+||..+.+...... .+......+
T Consensus       133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~  212 (432)
T d1qksa2         133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  212 (432)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence            999999999887766532           33456778899988764 55667899999998876543322 234567889


Q ss_pred             EECCCCCEEEEecC-CCeEEEEeCCCceeeeeeccC----CCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         160 HFNRDGSLIVSSSY-DGLCRIWDTASGQCLKTLIDD----DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       160 ~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                      .++|+|+++++++. ++.+.++|..+++........    +........+...+...++.. .++.+.+|+..
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence            99999998777665 558899999887765544322    112223344444444444443 26677777654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=5.6e-16  Score=118.08  Aligned_cols=191  Identities=13%  Similarity=0.164  Sum_probs=150.3

Q ss_pred             EEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEE-EEEcCCCeEEEEECCCceEEEEEecCCccEEEEEEcC
Q psy4393          43 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP  121 (247)
Q Consensus        43 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  121 (247)
                      ++.+.++.|.+||..+++....+... ..+..++|+|||+++ +++..++.|++||+.+++.+..+..+.. ...+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence            45678899999999999988887643 457889999999987 5667889999999999998888876654 57889999


Q ss_pred             CCCEEEE-eeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE-EecCCCeEEEEeCCCceeeeeeccCCCCCe
Q psy4393         122 QSNLIVS-GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (247)
Q Consensus       122 ~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v  199 (247)
                      ++..++. +..++.+.+|+..+++....+..+ ....++.++|++..++ ++..++.+.+|+..+.+....+...  ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSE
T ss_pred             ccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC--CCc
Confidence            9986655 556678999999999888877665 4567889999998765 5556788999999998877665432  346


Q ss_pred             EEEEECCCCCEEEEEEcC-CeEEEEECCCcceEEEEccCC
Q psy4393         200 SFVKFSPNGKYILAATLD-NTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       200 ~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~  238 (247)
                      ..++++|+++.+++++.+ +.+.+|+............+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeecccccC
Confidence            789999999999888765 678888877766555444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=1e-15  Score=120.56  Aligned_cols=213  Identities=10%  Similarity=0.001  Sum_probs=143.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------C
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------D   89 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~   89 (247)
                      .+.+++..++++|||+.++...     ..+.|.+||..+++....+..+..+  .++|+|||++++++.          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            5788899999999999987642     3457999999999988887655443  689999999998874          3


Q ss_pred             CCeEEEEECCCceEEEEEecCC-----------------------------------------------ccEEEEEEcCC
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHS-----------------------------------------------NYVFCCNFNPQ  122 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~-----------------------------------------------~~v~~~~~~~~  122 (247)
                      ++.|.+||..+++.+..+..+.                                               ....++.++|+
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  175 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPG  175 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecC
Confidence            5789999998876544332110                                               11123456666


Q ss_pred             CCE-EEEeeCCCCEEEEECCCCeEEEeecC--------------------------CC----------------------
Q psy4393         123 SNL-IVSGSFDESVRIWDVRTGKCLKTLPA--------------------------HS----------------------  153 (247)
Q Consensus       123 ~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~--------------------------~~----------------------  153 (247)
                      +.. +++.+.|+.+.+||...+........                          ..                      
T Consensus       176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  255 (373)
T d2madh_         176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccc
Confidence            654 45677888999998765433221100                          00                      


Q ss_pred             -----------CCeEEEEECCCCCEEE----------EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCE--
Q psy4393         154 -----------DPVSAVHFNRDGSLIV----------SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY--  210 (247)
Q Consensus       154 -----------~~i~~~~~~~~~~~l~----------~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--  210 (247)
                                 .....+.+++++..++          +...++.+.+||..+++.+..+..  ...+..++|+|||+.  
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l  333 (373)
T d2madh_         256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDL  333 (373)
T ss_pred             cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC--CCCeeEEEECCCCCEEE
Confidence                       0011234445554433          334456788999988887765532  345678999999984  


Q ss_pred             EEEEEcCCeEEEEECCCcceEEEEccC-Cccc
Q psy4393         211 ILAATLDNTLKLWDSKVVTPAIICSTP-LNLN  241 (247)
Q Consensus       211 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~  241 (247)
                      +++++.|+.|+|||..+++.+..+..+ ..|+
T Consensus       334 ~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~  365 (373)
T d2madh_         334 YALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ  365 (373)
T ss_pred             EEEeCCCCeEEEEECCCCCEEEEECCCCCCCc
Confidence            467889999999999999988877643 3344

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.2e-15  Score=116.48  Aligned_cols=203  Identities=12%  Similarity=0.193  Sum_probs=129.4

Q ss_pred             ecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCeEEEEE---ecccCCeEEEEECCCCCEEEEEcC-CCeEEEEEC
Q psy4393          24 AGHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWEL   98 (247)
Q Consensus        24 ~~h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~   98 (247)
                      ..|.+.+..++|+|||++|++++ .|+.|++|++........+   ......+..++|+|||+++++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            46888999999999999986554 5899999998754322222   223345678999999999988875 678898887


Q ss_pred             CCceEEEE--EecCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEE----------------------------
Q psy4393          99 SSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLK----------------------------  147 (247)
Q Consensus        99 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~----------------------------  147 (247)
                      ........  ...+...+.++.++|+++.++.++. +..+.+|+........                            
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            66543322  2334445666778888887766654 3456666654321000                            


Q ss_pred             -------------------------eec------CCCCCeEEEEECCCCCEEEE-ecCCCeEEEEeCCCceeeeeec--c
Q psy4393         148 -------------------------TLP------AHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLKTLI--D  193 (247)
Q Consensus       148 -------------------------~~~------~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~--~  193 (247)
                                               ...      ........+++++++++++. +..++.+.+|++..........  .
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence                                     000      00112345677888876554 4556788888776543222111  1


Q ss_pred             CCCCCeEEEEECCCCCEEEEEEc-CCeEEEEECC
Q psy4393         194 DDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSK  226 (247)
Q Consensus       194 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~  226 (247)
                      ........++|+|||++|++++. ++.|++|+.+
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            12233466899999999888765 5899999554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=5.5e-16  Score=121.16  Aligned_cols=205  Identities=12%  Similarity=0.109  Sum_probs=141.3

Q ss_pred             eEEEEECCCCCEEEEE----------eCCCeEEEEecCCCeEEEEEecccC-------CeEEEEECCCCCEEEEEc--CC
Q psy4393          30 VSSVKFSPNGEWLASS----------SADKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS--DD   90 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~----------~~dg~v~iw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~d   90 (247)
                      ...++|+|||++|+++          ..++.|++||..+++....+..+..       ....++|+|+++.++.+.  .+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3468999999988764          3478999999999988777654322       234578999999887764  45


Q ss_pred             CeEEEEECCCceEEEEEecCCc---------------------------------------------cEEEEEEcCCCCE
Q psy4393          91 KTLKIWELSSGKCLKTLKGHSN---------------------------------------------YVFCCNFNPQSNL  125 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~~~~---------------------------------------------~v~~~~~~~~~~~  125 (247)
                      ..+.+|+..+++.+..+.....                                             .+....+.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            6889999988765544332110                                             0111233445556


Q ss_pred             EEEeeCCCCEEEEECCCCeEEE--eecCC----------CCCeEEEEECCCCCEEEEecCC----------CeEEEEeCC
Q psy4393         126 IVSGSFDESVRIWDVRTGKCLK--TLPAH----------SDPVSAVHFNRDGSLIVSSSYD----------GLCRIWDTA  183 (247)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~--~~~~~----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~v~d~~  183 (247)
                      ++.++.++.+++|++..+....  ....+          ......+++++++..++....+          ..+.+||..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            7777888899999988765321  11111          1122347889999987765433          369999999


Q ss_pred             CceeeeeeccCCCCCeEEEEECCCCC--EEEEEEcCCeEEEEECCCcceEEEEcc
Q psy4393         184 SGQCLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDSKVVTPAIICST  236 (247)
Q Consensus       184 ~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~  236 (247)
                      +++.+..+...  ..+..++|+|||+  +++++..|+.|+|||.++++.+..+..
T Consensus       289 t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         289 TGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCcEEEEecCC--CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            99877665432  3467899999998  345566799999999999998877754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3.7e-14  Score=111.68  Aligned_cols=210  Identities=10%  Similarity=-0.024  Sum_probs=134.0

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEecCCCeEEEEEecccC-------CeEEEEECCCCCEEEEEc-CCCeE
Q psy4393          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS-DDKTL   93 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~i   93 (247)
                      .++|+|||+.|++++          .|+.|++||..+++....+..+..       ....++|+|||++++++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999888754          467899999999888777654322       234589999999988775 57899


Q ss_pred             EEEECCCceEEEEEecCCcc-------EEEEEEcCCCCEEEEee------------------------------------
Q psy4393          94 KIWELSSGKCLKTLKGHSNY-------VFCCNFNPQSNLIVSGS------------------------------------  130 (247)
Q Consensus        94 ~v~d~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~------------------------------------  130 (247)
                      .+||+.+++....+..+...       ...+.+++++.+++...                                    
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            99999998877665433211       11122333333222211                                    


Q ss_pred             CCCCEEEEECCCCeEEEeec--CC----------CCCeEEEEECCCCCEEEEecCC---------CeEEEEeCCCceeee
Q psy4393         131 FDESVRIWDVRTGKCLKTLP--AH----------SDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLK  189 (247)
Q Consensus       131 ~d~~i~v~d~~~~~~~~~~~--~~----------~~~i~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~  189 (247)
                      ..+.+++++...+.......  ..          ......+++++++..+++...+         ..+.+||..+++.+.
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence            12233344433322211110  00          0112246778888776654322         258899999998776


Q ss_pred             eeccCCCCCeEEEEECCCCCE-E-EEEEcCCeEEEEECCCcceEEEEccCCcccce
Q psy4393         190 TLIDDDNPPVSFVKFSPNGKY-I-LAATLDNTLKLWDSKVVTPAIICSTPLNLNYF  243 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~~~~~-l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  243 (247)
                      .+...  ..+..++|+|||+. | +++..|+.|+|||..+++.+..+.....|+.+
T Consensus       309 ~~~~~--~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l  362 (368)
T d1mdah_         309 PISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESL  362 (368)
T ss_dssp             CCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred             EecCC--CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEE
Confidence            65432  34677999999973 3 45567899999999999998888877666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.7e-13  Score=105.61  Aligned_cols=186  Identities=13%  Similarity=0.226  Sum_probs=129.1

Q ss_pred             EEEEeCCCeEEEEecCCCeEEE--EEecccCCeEEEEECCCCCEEEEE-cCCCeEEEEECCCceEEEEE---ecCCccEE
Q psy4393          42 LASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGKCLKTL---KGHSNYVF  115 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~---~~~~~~v~  115 (247)
                      ++++..++.|++|++.......  ....+...+..++|+|||++|+++ ..++.|.+|++........+   ......+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            3567789999999986543322  233567789999999999988554 45899999998765322222   22334456


Q ss_pred             EEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEe--ecCCCCCeEEEEECCCCCEEEEecC-CCeEEEEeCCCceeee--
Q psy4393         116 CCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLK--  189 (247)
Q Consensus       116 ~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~--  189 (247)
                      .++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|+++++++++. +..+.+|+........  
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  166 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  166 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence            7899999999988875 66789998876654333  3345556778899999998877664 4578999876543221  


Q ss_pred             ---eeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCC
Q psy4393         190 ---TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKV  227 (247)
Q Consensus       190 ---~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~  227 (247)
                         ............++|++++.+++... ..+...+|+...
T Consensus       167 ~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         167 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence               11222334457899999999887766 456788887543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=4.1e-14  Score=109.45  Aligned_cols=160  Identities=13%  Similarity=0.062  Sum_probs=118.8

Q ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec-CCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCCeEEEeecCC
Q psy4393          75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKCLKTLPAH  152 (247)
Q Consensus        75 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~  152 (247)
                      ++|+++++++++++.++.|.+||+++++.++.++. +......+.|+|+|++++ ++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46899999999999999999999999999888764 344567899999999874 5567899999999999887766543


Q ss_pred             CC------CeEEEEECCCCCEEEEec------------CCCeEEEEeCCCceeeeeecc-CCCCCeEEEEECCCCCEEEE
Q psy4393         153 SD------PVSAVHFNRDGSLIVSSS------------YDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA  213 (247)
Q Consensus       153 ~~------~i~~~~~~~~~~~l~~~~------------~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~  213 (247)
                      ..      .+..++++|||++++++.            .++.+.+||..+++....+.. .....+..+.+++++..++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            22      245689999999887765            366788898887665433221 11223455667787776654


Q ss_pred             EEcCCeEEEEECCCcceEEEEccC
Q psy4393         214 ATLDNTLKLWDSKVVTPAIICSTP  237 (247)
Q Consensus       214 ~~~dg~i~vwd~~~~~~~~~~~~~  237 (247)
                         ++.+.+||..+...+.....+
T Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~  182 (346)
T d1jmxb_         162 ---GPDIYKMDVKTGKYTVALPLR  182 (346)
T ss_dssp             ---SSSEEEECTTTCCEEEEECST
T ss_pred             ---CCcceEEEccCCCEEEEEecC
Confidence               356899999888777665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.5e-12  Score=101.32  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=131.2

Q ss_pred             EEEECCCCCEEEEEe-----CCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCCeEEEE
Q psy4393          32 SVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIW   96 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~   96 (247)
                      -.+.+|||+.++...     .++.|.+||..+++....+..+..  ..++|+|||++|++++          .++.|.+|
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            345689999987653     355799999999998888765543  3689999999887653          46889999


Q ss_pred             ECCCceEEEEEecCCc-------cEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCC-------CeEEEE
Q psy4393          97 ELSSGKCLKTLKGHSN-------YVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSD-------PVSAVH  160 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~-------~i~~~~  160 (247)
                      |..+++....+..+..       ....+.|+|++..++...  .+..+.+||..+++.+..+..+..       ....+.
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             ECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            9999988776653321       123468999999887764  456789999999988777665432       122345


Q ss_pred             ECCCCCEEEEec-CCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         161 FNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       161 ~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ++++++.++... .++.+.+++......      .....+....+.+++..++.++.++.+.+|+.......
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence            566665554432 233444444333221      12223344567788888999999999999998876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.47  E-value=6e-12  Score=98.54  Aligned_cols=160  Identities=11%  Similarity=-0.060  Sum_probs=119.1

Q ss_pred             cccCCeEEEEECCCCCEEEEEc-----CCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeC----------
Q psy4393          67 GHKLGISDVAWSSDSRLLVSGS-----DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF----------  131 (247)
Q Consensus        67 ~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------  131 (247)
                      .+..++..++++|||+.++...     ..+.+.+||..+++.+..+..+..  ..+.|+|+|+.+++++.          
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccccc
Confidence            3566788899999999987652     345799999999998888775544  36899999999988753          


Q ss_pred             CCCEEEEECCCCeEEEeecCCCCCe-------EEEEECCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCCCCCeEEE
Q psy4393         132 DESVRIWDVRTGKCLKTLPAHSDPV-------SAVHFNRDGSLIVSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFV  202 (247)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~  202 (247)
                      ++.|.+||+.+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+.....     .....+
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  170 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----SSPTCY  170 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-----ccceeE
Confidence            5679999999999887776554433       3467888888765554  3567888888776654433     223567


Q ss_pred             EECCCCCEE-EEEEcCCeEEEEECCCcceEEE
Q psy4393         203 KFSPNGKYI-LAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       203 ~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .++|+++.+ ++.+.||.+.+||.........
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            899999766 5677899999999877665444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=8.4e-12  Score=101.11  Aligned_cols=148  Identities=15%  Similarity=0.217  Sum_probs=110.2

Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec-----CCccEEEEEEcCCCCEEEEeeC---------CCCEEEE
Q psy4393          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSF---------DESVRIW  138 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~  138 (247)
                      ..+.|.++++++..  .++.+.+||+.+++....+..     +...+.+..|+||++.|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            34679999887654  467899999999987654443     3456889999999999998753         4578899


Q ss_pred             ECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-----------------CCCeEE
Q psy4393         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----------------NPPVSF  201 (247)
Q Consensus       139 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~v~~  201 (247)
                      |+.+++. ..+..+...+..+.|+|||+.+|.. .++.+.+|+..+++..+......                 ......
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998874 5577778889999999999999885 57789999998887554332111                 112345


Q ss_pred             EEECCCCCEEEEEEcCCe-EEEEE
Q psy4393         202 VKFSPNGKYILAATLDNT-LKLWD  224 (247)
Q Consensus       202 ~~~s~~~~~l~~~~~dg~-i~vwd  224 (247)
                      +.|||||++|+....|.+ +..|+
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cEECCCCCccceeEecCCcCceEE
Confidence            789999999999876543 44443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.7e-09  Score=79.41  Aligned_cols=205  Identities=17%  Similarity=0.177  Sum_probs=124.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-C--eEEEEEC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSAD-K--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-K--TLKIWEL   98 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~   98 (247)
                      .+...+.+.+|||||+.||..... +  .+.+.+...+.. ..+..+........|+|+|+.++..... +  .+..+..
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            356778899999999999865433 2  355555544443 4455566778889999999988765542 2  2333333


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEEEe-eCCC--CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      ....... ............+++++..++.. ..++  .+.+.++..+... .............|+|+++.++..+.++
T Consensus       115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         115 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             TTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             cccccee-eeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecC
Confidence            3333222 22233333445567766655444 3444  3556666555432 2333445566778999999887765543


Q ss_pred             ---eEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC---CeEEEEECCCcceEEEEc
Q psy4393         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~  235 (247)
                         .+.+.+...+...  .. ..........|+|||+.|+..+..   ..|.+++.+...+..+..
T Consensus       193 ~~~~i~~~~~~~~~~~--~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~  255 (269)
T d2hqsa1         193 GQQHIAKQDLATGGVQ--VL-SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  255 (269)
T ss_dssp             SCEEEEEEETTTCCEE--EC-CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             CceeeeEeecccccce--Ee-ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence               4555566554432  22 223345678899999999876643   478999998877654433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.2e-11  Score=100.20  Aligned_cols=139  Identities=13%  Similarity=0.212  Sum_probs=107.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-----cCCeEEEEECCCCCEEEEEcC---------CCeEEEEE
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSRLLVSGSD---------DKTLKIWE   97 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d   97 (247)
                      ++.|.++++++..  .++.+.+||..+++....+..+     ...|.++.|+|||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5779999987764  5788999999998877665543     456899999999999988753         46788999


Q ss_pred             CCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC------------------CCCeEEE
Q psy4393          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------SDPVSAV  159 (247)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------~~~i~~~  159 (247)
                      +.+++. ..+..+...+..+.|+|+|+.+|.. .++.+++|+..+++..+....+                  .+....+
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            998874 4567777889999999999999986 4678999999888765433211                  1223557


Q ss_pred             EECCCCCEEEEecCC
Q psy4393         160 HFNRDGSLIVSSSYD  174 (247)
Q Consensus       160 ~~~~~~~~l~~~~~d  174 (247)
                      .|+|||+.|+....|
T Consensus       177 ~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         177 WWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EECTTSSEEEEEEEE
T ss_pred             EECCCCCccceeEec
Confidence            899999999887544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.5e-09  Score=80.81  Aligned_cols=202  Identities=10%  Similarity=0.005  Sum_probs=130.7

Q ss_pred             CCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEE
Q psy4393          26 HTKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  104 (247)
                      +.-.-.+++++++|+..++. +..+.+..++...................+++++++..+++...++.+++++..+...+
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            33456799999999966654 45567777665433222211122234567899999998888777777776665554443


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCC
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (247)
                      .... .......++++++++++++-..+..+..++...................++++++++++++...++.+..+|...
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            3222 234567899999999888776677777777654432221112223456789999999888888888999999876


Q ss_pred             ceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcc
Q psy4393         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVT  229 (247)
Q Consensus       185 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  229 (247)
                      ..... +..........++++++|.++++....++|..++.....
T Consensus       171 ~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         171 NNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             CCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             ceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            54332 222222344779999999887777778899989875543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=6.8e-10  Score=88.10  Aligned_cols=200  Identities=9%  Similarity=0.056  Sum_probs=133.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEec-ccCCeEEEEECCCCCE--EEEEcCCC---------
Q psy4393          25 GHTKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRL--LVSGSDDK---------   91 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~d~---------   91 (247)
                      .|+.......++|||++|++. ..+..|.++|..+.+....+.. .......++|+|+++.  ++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            355566666678999998665 4678999999999988777653 4567899999999884  44443332         


Q ss_pred             --------eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCC-------------------------------
Q psy4393          92 --------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-------------------------------  132 (247)
Q Consensus        92 --------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------------------  132 (247)
                              .+..+|..+.+....+.... ....+.++|+|+++++.+.+                               
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    23457777776665555333 35567899999988776543                               


Q ss_pred             ----------CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE-EecCCCeEEEEeCCCceee--------eee--
Q psy4393         133 ----------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQCL--------KTL--  191 (247)
Q Consensus       133 ----------~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~--------~~~--  191 (247)
                                +.+.+++......+..+..+.. ...+.++|||++++ ++..++++.+||+.+.+..        ..+  
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                      2233333333344455555443 35689999999875 5677899999998653210        000  


Q ss_pred             ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       192 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ...........+|+++|..+.+...|..|..|+..
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            11112223456899999888888899999999963

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.27  E-value=5.2e-10  Score=88.79  Aligned_cols=183  Identities=13%  Similarity=0.079  Sum_probs=120.4

Q ss_pred             EEEEeCCCeEEEEecCCCeEEEEEec------------------------------ccCCeEEEEECCCCCEEEEE-cCC
Q psy4393          42 LASSSADKLIKIWGAYDGKFEKTISG------------------------------HKLGISDVAWSSDSRLLVSG-SDD   90 (247)
Q Consensus        42 l~~~~~dg~v~iw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d   90 (247)
                      +++++.+|.|++|++..++....+..                              |.........+|||+++++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            45677889999999888877666522                              11223334456899988555 567


Q ss_pred             CeEEEEECCCceEEEEEec-CCccEEEEEEcCCCCE--EEEeeCCC-----------------CEEEEECCCCeEEEeec
Q psy4393          91 KTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNL--IVSGSFDE-----------------SVRIWDVRTGKCLKTLP  150 (247)
Q Consensus        91 ~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~v~d~~~~~~~~~~~  150 (247)
                      ..|.++|+.+.+....+.- .......++++|+++.  ++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999988776653 3556888999998884  33333321                 23557887777666655


Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCC-----------------------------------------eEEEEeCCCceeee
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSSYDG-----------------------------------------LCRIWDTASGQCLK  189 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~v~d~~~~~~~~  189 (247)
                      ... ....+.++|+|+++++++.+.                                         .+.+++....+.+.
T Consensus       174 v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            433 456789999999888776432                                         23333333333333


Q ss_pred             eeccCCCCCeEEEEECCCCCEEEEE-EcCCeEEEEECCC
Q psy4393         190 TLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSKV  227 (247)
Q Consensus       190 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~  227 (247)
                      .+... .. -..+.++|||++++++ ..+++|.|||...
T Consensus       253 ~IPvg-ks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         253 YIPVP-KN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EECCB-SS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEeCC-CC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            33222 22 2568999999988664 5789999999754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=2.3e-09  Score=79.81  Aligned_cols=197  Identities=8%  Similarity=-0.025  Sum_probs=130.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      ....++++++|+++++....+.+++++..+........ .......+++.++++.+++-..+..+..++...........
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            34678899999877776666666666544433322222 22457889999999988777667777777765433221111


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceee
Q psy4393         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (247)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (247)
                      ........+.++++++++++...++.|..+|...................++++++|.++++....+.|..++...... 
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-  215 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-  215 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-
Confidence            1223345788999999888888888899999875543332223344568899999999888888888888887655432 


Q ss_pred             eeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCC
Q psy4393         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKV  227 (247)
Q Consensus       189 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  227 (247)
                      .......-..-..++++++|.++++-..+++|+.++...
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            222112222346899999998777767778888877554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=9.7e-08  Score=71.53  Aligned_cols=154  Identities=16%  Similarity=0.289  Sum_probs=102.4

Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec
Q psy4393          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (247)
Q Consensus        73 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (247)
                      ..+++.+++..+++....+.+.+++.. ++.+..+.  .+......++++++++++++....+.|++||.. ++.+..+.
T Consensus       117 ~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g  194 (279)
T d1q7fa_         117 RGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG  194 (279)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES
T ss_pred             ceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeec
Confidence            344555555555555555555555543 34444442  233456678889999988888888999999975 55565553


Q ss_pred             --CCCCCeEEEEECCCCCEEEEecC-CCeEEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         151 --AHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       151 --~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                        ........++++++|+++++-.. +..|.+|+. +++.+..+.... ......+++.|||.++ .++.+++|++|...
T Consensus       195 ~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         195 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYV  272 (279)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECS
T ss_pred             ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEee
Confidence              23345688999999997776544 456999985 466555543322 2345778999999754 45678999999988


Q ss_pred             Ccce
Q psy4393         227 VVTP  230 (247)
Q Consensus       227 ~~~~  230 (247)
                      +..|
T Consensus       273 ~~~~  276 (279)
T d1q7fa_         273 QLAP  276 (279)
T ss_dssp             CCCC
T ss_pred             eecC
Confidence            7655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.21  E-value=1.5e-07  Score=71.87  Aligned_cols=212  Identities=8%  Similarity=0.042  Sum_probs=136.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC----CCeEEEEECCC
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----DKTLKIWELSS  100 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~  100 (247)
                      .....+-.++|+++|++.++-...+.|..|+...+.....+.........+++.++|+++++...    .+.+...+...
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            34445678999999997777667889999988776655555555667889999999998876543    23455555555


Q ss_pred             ceEEEEEec--CCccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEE-EEe
Q psy4393         101 GKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSS  171 (247)
Q Consensus       101 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~  171 (247)
                      .........  .......+.+.++|++.++....      +.+..++...+. +..+...-...+.++|+|+++.| ++-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEec
Confidence            443332221  12346678899999877764321      235555544332 22222222345679999999866 445


Q ss_pred             cCCCeEEEEeCCCc-eee----eee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCC
Q psy4393         172 SYDGLCRIWDTASG-QCL----KTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPL  238 (247)
Q Consensus       172 ~~dg~i~v~d~~~~-~~~----~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  238 (247)
                      +..+.|..||+... ...    ...  .......-..++++++|++.++....+.|.+||. .++.+..+..|.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            66789999987532 111    111  1111122356899999998888888999999996 566766666664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=1.7e-08  Score=76.66  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=132.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc--eEEEE
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG--KCLKT  106 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~  106 (247)
                      .+..++++|||+++++...++.|..|+.. ++. ..+......+..++|.++|+++++...++.+..++....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            57899999999999988889988888754 332 334445667899999999999888888888877776432  22211


Q ss_pred             Ee-cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec----------CCCCCeEEEEECCCCCEEEEecCCC
Q psy4393         107 LK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP----------AHSDPVSAVHFNRDGSLIVSSSYDG  175 (247)
Q Consensus       107 ~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg  175 (247)
                      .. ........+.+.++++++++...++.+..+|...+.......          ........+.++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            11 233456788999999998888888888888888765322211          1112344555543 33555667788


Q ss_pred             eEEEEeCCCceeeeeec-cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCc
Q psy4393         176 LCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVV  228 (247)
Q Consensus       176 ~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  228 (247)
                      .|..++........... .........++++++|++.++...+++|..++....
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            88888876543221110 001122345899999998888888899999987543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=1.1e-09  Score=85.59  Aligned_cols=198  Identities=8%  Similarity=-0.126  Sum_probs=125.4

Q ss_pred             CCCeEEEEECCCCCEE--EE-EeCCC--eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc----------CCC
Q psy4393          27 TKAVSSVKFSPNGEWL--AS-SSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDK   91 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l--~~-~~~dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~   91 (247)
                      .++...++..++++..  +. ...++  .+.+||..+++....+..+..+  .++|+|||+.|++.+          .++
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence            3444555667888753  22 33444  4667788888888877765544  588999999888754          366


Q ss_pred             eEEEEECCCceEEEEEecCCc-------cEEEEEEcCCCCEEEEee-CCCCEEEEECCCCeEEEeecCCCCCeEEEEECC
Q psy4393          92 TLKIWELSSGKCLKTLKGHSN-------YVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  163 (247)
                      .|.+||..+++.+..+..+..       ....+.|+|+|++++++. .++.+.+||+.+++....+..+.....   ...
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~  173 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPG  173 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEE
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccC
Confidence            799999999988776653321       123578999999888775 578999999999998887765543321   111


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeee-----ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceE
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPA  231 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  231 (247)
                      ....+++.+.||.+.++++.........     ............+++++..+...  ++.+.+++.......
T Consensus       174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT  244 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE
T ss_pred             CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceE
Confidence            2335556667777777776554322111     11112223446677777655443  455666665554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=1.9e-07  Score=72.74  Aligned_cols=160  Identities=11%  Similarity=0.122  Sum_probs=100.5

Q ss_pred             CCeEEEEECCCCCEEEEEcC-CCeEEEEECCCc-eEE--EEEe--cCCccEEEEEEcCCCCEEEEee-CCCCEEEEECCC
Q psy4393          70 LGISDVAWSSDSRLLVSGSD-DKTLKIWELSSG-KCL--KTLK--GHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRT  142 (247)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~  142 (247)
                      ..+.++.|+|+|++++++.. ...|.+|+.... ...  ....  ........+.|+|++++++... .++.|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999999998877754 457888876543 221  1111  2234577899999999886655 467899999865


Q ss_pred             CeE--EEe---ec--------------CCCCCeEEEEECCCCCEEEEecC------CCeEEEEeCCCceeeee---ec--
Q psy4393         143 GKC--LKT---LP--------------AHSDPVSAVHFNRDGSLIVSSSY------DGLCRIWDTASGQCLKT---LI--  192 (247)
Q Consensus       143 ~~~--~~~---~~--------------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~---~~--  192 (247)
                      +..  +..   ..              .+......+.++|+|++|+++..      .+.|..|++.....+..   +.  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            432  111   11              00112456889999999987642      23477777654321111   11  


Q ss_pred             cCCCCCeEEEEECC-CCCEEEEEE-cCCeEEEEECCCcc
Q psy4393         193 DDDNPPVSFVKFSP-NGKYILAAT-LDNTLKLWDSKVVT  229 (247)
Q Consensus       193 ~~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~vwd~~~~~  229 (247)
                      ......-..++++| +|++|+++. .++.|.+|+.+...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            11122235588998 899887775 56899999876554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=6.7e-08  Score=73.76  Aligned_cols=195  Identities=12%  Similarity=0.166  Sum_probs=124.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc-c----CCeEEEEECCCCCEEEEEcC---------------
Q psy4393          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-K----LGISDVAWSSDSRLLVSGSD---------------   89 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~---------------   89 (247)
                      -..++|+++|+.++++...+.+...+...... ..+... .    ...+++++.++|++.++-..               
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            45799999999888877777788888654432 222111 1    13578999999998776432               


Q ss_pred             CCeEEEEECCCceEEEEEecCCccEEEEEEcCCCC-----EEEEeeCCCCEEEEECCCCeEEE------eecC-CCCCeE
Q psy4393          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSFDESVRIWDVRTGKCLK------TLPA-HSDPVS  157 (247)
Q Consensus        90 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~v~d~~~~~~~~------~~~~-~~~~i~  157 (247)
                      .|.+..++.. ++...... ....-..++|+|++.     +.++-+..+.|..||+.....+.      .+.. ......
T Consensus       152 ~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            2344444432 33322222 222345678888764     45555677889888875432221      1221 122346


Q ss_pred             EEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEE-EEEcCCeEEEEECCCc
Q psy4393         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDSKVV  228 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~  228 (247)
                      .|+++.+|+++++....+.|.+||.+.++....+... ....++++|.||++.|+ +.+.+|+|..+|....
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            7899999998888777899999998877655444332 34568899999998664 4556789999887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=2.9e-07  Score=70.14  Aligned_cols=210  Identities=11%  Similarity=0.077  Sum_probs=128.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcCCCeEEE
Q psy4393          27 TKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSDDKTLKI   95 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v   95 (247)
                      -...-.++|+++|+++++...       +|.|..|+..++.........    ...-..+.|.++++.++++...+.+..
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            345667899999997765332       467888888776544332211    223567999999998888877777888


Q ss_pred             EECCCceEEEEEecCC----ccEEEEEEcCCCCEEEEeeC---------------CCCEEEEECCCCeEEEeecCCCCCe
Q psy4393          96 WELSSGKCLKTLKGHS----NYVFCCNFNPQSNLIVSGSF---------------DESVRIWDVRTGKCLKTLPAHSDPV  156 (247)
Q Consensus        96 ~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d~~i~v~d~~~~~~~~~~~~~~~~i  156 (247)
                      ++..............    .....+.++++|++.++...               .|.+..++.. ++..... ..-...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCccee
Confidence            8876543221111111    12456789999998877422               2234444432 2222221 112234


Q ss_pred             EEEEECCCCC-----EEEEecCCCeEEEEeCCCceeee---eec---cCCCCCeEEEEECCCCCEEEEEEcCCeEEEEEC
Q psy4393         157 SAVHFNRDGS-----LIVSSSYDGLCRIWDTASGQCLK---TLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (247)
Q Consensus       157 ~~~~~~~~~~-----~l~~~~~dg~i~v~d~~~~~~~~---~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  225 (247)
                      +.++|+|++.     ++++-+..+.|..||+.....+.   .+.   .........++++.+|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6788888764     44555677889988865332211   111   111222457899999998888778899999998


Q ss_pred             CCcceEEEEccCC
Q psy4393         226 KVVTPAIICSTPL  238 (247)
Q Consensus       226 ~~~~~~~~~~~~~  238 (247)
                      +...++..+..|.
T Consensus       255 ~~g~~~~~i~~p~  267 (314)
T d1pjxa_         255 DGGQPKMRIRCPF  267 (314)
T ss_dssp             TCBSCSEEEECSS
T ss_pred             CCCEEEEEEECCC
Confidence            8777666555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=1.2e-07  Score=71.83  Aligned_cols=192  Identities=13%  Similarity=0.060  Sum_probs=124.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CeEEEEEe-cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      .....+.+++|+++|+++++...++.+..++...  +....... ........+.+.++++++++.+.++.+..++...+
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            4567789999999999888877778887776543  22222222 23345788999999999988888999988888776


Q ss_pred             eEEEEEec----------CCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEe--ecCCCCCeEEEEECCCCCEEE
Q psy4393         102 KCLKTLKG----------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus       102 ~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      ........          .......+.++. +.++++....+.|..++.........  ..........++++++|.+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v  223 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG  223 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred             cceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence            53322211          112244555553 34556667778888888765432111  101122345689999999888


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEE---CCCCCEEEEEEcC
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF---SPNGKYILAATLD  217 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  217 (247)
                      +...++.|..++.........-........+.++|   ++|++.|+.++..
T Consensus       224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         224 ATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            88888999999876543221111222344688999   7788988877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.9e-08  Score=79.21  Aligned_cols=201  Identities=10%  Similarity=0.106  Sum_probs=126.9

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEeccc---CCeEEEEECCCCCEEEEEc---------CCCeEEEEECCC
Q psy4393          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSRLLVSGS---------DDKTLKIWELSS  100 (247)
Q Consensus        33 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~---------~d~~i~v~d~~~  100 (247)
                      ..|.+++.++.. ..+|.+.+|++.+++....+....   ..+....|+||++.++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            358888876653 567889999998776655554432   3567788999999887653         346788999998


Q ss_pred             ceEEEEEe--cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCC-CC-----------------CeEEEE
Q psy4393         101 GKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SD-----------------PVSAVH  160 (247)
Q Consensus       101 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~-----------------~i~~~~  160 (247)
                      +.......  .....+....|+|+|+.+|... ++.|.+.+...+..++..... .+                 .-..+.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            76543221  2233444578999999998876 567888888766554433221 11                 124678


Q ss_pred             ECCCCCEEEEecCC-C---------------------------------eEEEEeCCCceeeeeeccC-----CCCCeEE
Q psy4393         161 FNRDGSLIVSSSYD-G---------------------------------LCRIWDTASGQCLKTLIDD-----DNPPVSF  201 (247)
Q Consensus       161 ~~~~~~~l~~~~~d-g---------------------------------~i~v~d~~~~~~~~~~~~~-----~~~~v~~  201 (247)
                      |+|||+.||....| .                                 .+.++|+.++.........     ...-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999875422 1                                 2344444433221111110     0112466


Q ss_pred             EEECCCCCEEEEEEc-C---CeEEEEECCCcceEEEEc
Q psy4393         202 VKFSPNGKYILAATL-D---NTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       202 ~~~s~~~~~l~~~~~-d---g~i~vwd~~~~~~~~~~~  235 (247)
                      +.|+|++++++.... +   ..+.++|..++....+..
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            889999987666442 2   268889998887665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.91  E-value=9.1e-07  Score=68.77  Aligned_cols=157  Identities=11%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             CeEEEEECCCCCEEEEEeC-CCeEEEEecCC-CeEE--EEEe--cccCCeEEEEECCCCCEEEE-EcCCCeEEEEECCCc
Q psy4393          29 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYD-GKFE--KTIS--GHKLGISDVAWSSDSRLLVS-GSDDKTLKIWELSSG  101 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~-~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~  101 (247)
                      .+.+++|+|+|+++++++. .+.|.+|+... +...  ....  ........++|+|+++++.+ ...++.|.+|+...+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4679999999998887653 45788886543 3222  1222  23456788999999998754 455789999998764


Q ss_pred             eEE--EE---Ee--------------cCCccEEEEEEcCCCCEEEEeeC-C-----CCEEEEECCCCeEEE------eec
Q psy4393         102 KCL--KT---LK--------------GHSNYVFCCNFNPQSNLIVSGSF-D-----ESVRIWDVRTGKCLK------TLP  150 (247)
Q Consensus       102 ~~~--~~---~~--------------~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~------~~~  150 (247)
                      ...  ..   ..              ........+.++|+|++++++.. +     +.|..|++.....+.      ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            321  11   11              01123456889999999887643 1     237777765422111      111


Q ss_pred             CCCCCeEEEEECC-CCCEEEEec-CCCeEEEEeCCCc
Q psy4393         151 AHSDPVSAVHFNR-DGSLIVSSS-YDGLCRIWDTASG  185 (247)
Q Consensus       151 ~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~v~d~~~~  185 (247)
                      ........++++| +|++|+++. .++.|.+|+.+..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2223346688998 789887764 5689999976543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.7e-06  Score=61.84  Aligned_cols=175  Identities=13%  Similarity=0.130  Sum_probs=104.7

Q ss_pred             eEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC---CeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEE
Q psy4393          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (247)
Q Consensus        50 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (247)
                      .|.+.|... .....+......+...+|+|||+.|+.....   ..+.+.+...+... .+..+........|+|++..+
T Consensus        20 ~l~i~d~dG-~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCC-CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            466667643 3334444456678899999999999866443   25666777665543 444556667788999999988


Q ss_pred             EEeeCC-CC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEE-ecCCC--eEEEEeCCCceeeeeeccCCCCCeE
Q psy4393         127 VSGSFD-ES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (247)
Q Consensus       127 ~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~~v~  200 (247)
                      +..... +.  +..+....... ..............+++++..++. ...+|  .+.+.++..+....  .........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~--~~~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--ITWEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--CCCSSSEEE
T ss_pred             eEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccccee--eeccccccc
Confidence            876542 22  22333332222 222233344455567777765544 44444  45566666654322  222334556


Q ss_pred             EEEECCCCCEEEEEEcCC---eEEEEECCCcc
Q psy4393         201 FVKFSPNGKYILAATLDN---TLKLWDSKVVT  229 (247)
Q Consensus       201 ~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~  229 (247)
                      ...|+|+++.++..+.++   .+.+.|.....
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~  206 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  206 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ccccccccceeEEEeecCCceeeeEeeccccc
Confidence            788999999998877654   45555554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=9.5e-06  Score=61.62  Aligned_cols=190  Identities=8%  Similarity=0.085  Sum_probs=118.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeC----CCeEEEEecCCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcC------CCe
Q psy4393          25 GHTKAVSSVKFSPNGEWLASSSA----DKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSD------DKT   92 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~~~----dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------d~~   92 (247)
                      ........++++++|+++++...    .+.+...+............  .......+++.++|++.++...      .+.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcce
Confidence            34456778999999987776432    23455555544444333322  1234778999999997776432      233


Q ss_pred             EEEEECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCC-eEE-------EeecCCCCCeEEEEECC
Q psy4393          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTG-KCL-------KTLPAHSDPVSAVHFNR  163 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~-~~~-------~~~~~~~~~i~~~~~~~  163 (247)
                      +..++...+. +..+.........++|+|+++.|+ +-+..+.|+.||+... ...       ............|++++
T Consensus       159 v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         159 VYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             EEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             eEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC
Confidence            5555544333 232322233456789999998664 4466788999987532 111       11111122346799999


Q ss_pred             CCCEEEEecCCCeEEEEeCCCceeeeeeccCC-----CCCeEEEEECCCCCEEEEEEc
Q psy4393         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATL  216 (247)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~  216 (247)
                      +|++.++....+.|.+||. .++.+..+....     ...+++++|.+++..+++.+.
T Consensus       238 ~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         238 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            9998888888999999996 566666553321     234678999998887776654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=3e-06  Score=62.61  Aligned_cols=193  Identities=13%  Similarity=0.071  Sum_probs=111.2

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcC----C--CeEEEEECCCceEEE
Q psy4393          34 KFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----D--KTLKIWELSSGKCLK  105 (247)
Q Consensus        34 ~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d--~~i~v~d~~~~~~~~  105 (247)
                      ..+||  |+.++-. .+|.|.+.++..++.. .+..+...+....|+|||+.|+....    +  ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  9988765 3567888898777654 55556667888999999999885532    2  247777877776543


Q ss_pred             EEecC-------CccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEEee------------------c----
Q psy4393         106 TLKGH-------SNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKTL------------------P----  150 (247)
Q Consensus       106 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~------------------~----  150 (247)
                       +...       ........|+|+++.++.....      ..+...+...+......                  .    
T Consensus        83 -lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          83 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFEL  161 (281)
T ss_dssp             -CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred             -eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeecccc
Confidence             2211       1234567899999988765322      12344444332211000                  0    


Q ss_pred             ---------------------------CCCCCeEEEEECCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCCCeEE
Q psy4393         151 ---------------------------AHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSF  201 (247)
Q Consensus       151 ---------------------------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v~~  201 (247)
                                                 ..........+.++. .+.....  ...|.++|+.+++... +.......  .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~--~  237 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYY--P  237 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSC--E
T ss_pred             ceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCCCcc--c
Confidence                                       000011112222322 2222222  2357777887665432 22222222  3


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         202 VKFSPNGKYILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       202 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                      ..|+|||+.|+.. .++.|.++|..++++..+.
T Consensus       238 ~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         238 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             ccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence            4689999998874 4789999999988766553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=5.1e-06  Score=61.85  Aligned_cols=154  Identities=16%  Similarity=0.281  Sum_probs=109.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--cccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      .....+++.++|.++++....+.+.+++. +++....+.  .+......+++.++++.+++....+.|.+||.. ++.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence            44567888888887777666777877775 455555543  234457788999999988888889999999974 56565


Q ss_pred             EEe--cCCccEEEEEEcCCCCEEEEeeC-CCCEEEEECCCCeEEEeecC--CCCCeEEEEECCCCCEEEEecCCCeEEEE
Q psy4393         106 TLK--GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (247)
Q Consensus       106 ~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  180 (247)
                      .+.  +.......++++++++++++-.. ++.|.+|+. +++.+..+..  .......+++.|+|.+++ +..+..|++|
T Consensus       192 ~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~f  269 (279)
T d1q7fa_         192 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIY  269 (279)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEE
T ss_pred             eecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEE
Confidence            553  23345678899999998877543 456999984 5766655532  223568899999997555 5578899999


Q ss_pred             eCCCc
Q psy4393         181 DTASG  185 (247)
Q Consensus       181 d~~~~  185 (247)
                      .....
T Consensus       270 r~~~~  274 (279)
T d1q7fa_         270 RYVQL  274 (279)
T ss_dssp             ECSCC
T ss_pred             Eeeee
Confidence            76543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.4e-07  Score=71.25  Aligned_cols=184  Identities=10%  Similarity=0.134  Sum_probs=110.5

Q ss_pred             CCeEEEEECCCCCEEEEEe---------CCCeEEEEecCCCeEEEEEec--ccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSS---------ADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ..+....||||+++++...         ..+...++|+.++........  ....+....|+|||+.++-.. ++.+.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3567888999999887653         246788899887765433221  233455678999999988765 5678888


Q ss_pred             ECCCceEEEEEecC-Ccc-----------------EEEEEEcCCCCEEEEeeCC-CC-----------------------
Q psy4393          97 ELSSGKCLKTLKGH-SNY-----------------VFCCNFNPQSNLIVSGSFD-ES-----------------------  134 (247)
Q Consensus        97 d~~~~~~~~~~~~~-~~~-----------------v~~~~~~~~~~~l~~~~~d-~~-----------------------  134 (247)
                      +..++...+..... ...                 -..+.|+|+|+.||....| ..                       
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            87766554433221 111                 1467799999999886432 22                       


Q ss_pred             ----------EEEEECCCCeEEEeec------CCCCCeEEEEECCCCCEEEEecC-C---CeEEEEeCCCceeeeeeccC
Q psy4393         135 ----------VRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIVSSSY-D---GLCRIWDTASGQCLKTLIDD  194 (247)
Q Consensus       135 ----------i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~v~d~~~~~~~~~~~~~  194 (247)
                                +.++|+.++.......      .....+..+.|+|++++++.... +   ..+.++|..+++........
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                      3344443332111111      11123567889999886655432 2   25788899988765443222


Q ss_pred             CCC----CeEEEEECCCCCEEE
Q psy4393         195 DNP----PVSFVKFSPNGKYIL  212 (247)
Q Consensus       195 ~~~----~v~~~~~s~~~~~l~  212 (247)
                      ...    .-....|+|||+.++
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEE
T ss_pred             CCceEeccCCceeEccCCCeeE
Confidence            111    112356899988543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=7.7e-05  Score=55.78  Aligned_cols=184  Identities=12%  Similarity=0.090  Sum_probs=120.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecc----cCCeEEEEECCCCCEEEEEcC----CCeEEEEEC
Q psy4393          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSD----DKTLKIWEL   98 (247)
Q Consensus        27 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~   98 (247)
                      ...+.++++.++|.+++++ .+ .+.++|..+++........    ...+.++.+.|+|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            4568889999998877654 44 5888998887765443211    234788999999997776532    223455666


Q ss_pred             CCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCC------e--EEEeecCCCCCeEEEEECCCCCEEE
Q psy4393          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTG------K--CLKTLPAHSDPVSAVHFNRDGSLIV  169 (247)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~l~  169 (247)
                      ..++....... ......+.|+++++.++ +.+..+.|..|++...      +  .........+....++++.+|.+.+
T Consensus       136 ~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         136 AKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             ETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             cCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence            66654433332 23456789999998665 4456778888886421      1  1112223344567899999999888


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEEC-CCCCEEEEEE
Q psy4393         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAAT  215 (247)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  215 (247)
                      +.-..+.|..||. .++.+..+.... ..+++++|- ||.+.|+..+
T Consensus       215 a~~~~g~V~~~dp-~G~~~~~i~lP~-~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         215 ARWGEGAVDRYDT-DGNHIARYEVPG-KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEETTTEEEEECT-TCCEEEEEECSC-SBEEEEEEESTTSCEEEEEE
T ss_pred             eeeCCCceEEecC-CCcEeeEecCCC-CceEEEEEeCCCCCEEEEEE
Confidence            7777889999996 466666554432 457889995 7777776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.49  E-value=9.1e-05  Score=55.37  Aligned_cols=203  Identities=14%  Similarity=0.061  Sum_probs=130.9

Q ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec
Q psy4393          31 SSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (247)
Q Consensus        31 ~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  109 (247)
                      -+..|++. +++..+=-..+.|..||..++... .+ .....+.++++.++|.+++++ .+ .+..+|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence            35678875 444444446788999998877543 22 234567889998888776654 44 577899988875433221


Q ss_pred             ----CCccEEEEEEcCCCCEEEEeeC----CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEE-EecCCCeEEEE
Q psy4393         110 ----HSNYVFCCNFNPQSNLIVSGSF----DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIW  180 (247)
Q Consensus       110 ----~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~  180 (247)
                          .......+.+.|+|++.++...    .+.-.+|.+..++....... -.....++++++++.++ +.+..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence                1235678889999998776532    23456676666654433322 23457889999998654 55667888888


Q ss_pred             eCCCce--e---eeee--ccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         181 DTASGQ--C---LKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       181 d~~~~~--~---~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      ++....  .   ...+  ..........++++.+|.+.++.-..+.|..||. +++.+..++.|..
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~  240 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK  240 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC
Confidence            764211  1   1111  1122334567899999987777777889999996 4566667676643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=0.00066  Score=49.42  Aligned_cols=66  Identities=14%  Similarity=0.340  Sum_probs=43.2

Q ss_pred             EEecCCCCeEEEEECCCCCEEEEEe-CCC-----eEEEEecCCCeEEEEEe------cccCCeEEEEECCCCCEEEEE
Q psy4393          22 TLAGHTKAVSSVKFSPNGEWLASSS-ADK-----LIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDSRLLVSG   87 (247)
Q Consensus        22 ~~~~h~~~v~~~~~s~~~~~l~~~~-~dg-----~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~   87 (247)
                      .+..+.+.+...+|||||++||... .++     .+.+++..+++......      ..........|+|+|+.|+..
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            3455677889999999999988543 222     36666766665443211      112235678899999988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.89  E-value=0.0017  Score=50.30  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             CCCEEEEEc-CCCeEEEEECCCceEEEEEec-CCccEEEEEE--cCCCCEEEEeeCCC------------------CEEE
Q psy4393          80 DSRLLVSGS-DDKTLKIWELSSGKCLKTLKG-HSNYVFCCNF--NPQSNLIVSGSFDE------------------SVRI  137 (247)
Q Consensus        80 ~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~~~d~------------------~i~v  137 (247)
                      ||+++++.. .+..|.+.|+++.+..+.+.. ....+..++.  .|...+++..+...                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            678776655 578999999999887664432 2234555555  34556666655522                  2667


Q ss_pred             EECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCC---------------eEEEE----------------------
Q psy4393         138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---------------LCRIW----------------------  180 (247)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~v~----------------------  180 (247)
                      +|..+.+....+.... ....+.++++|+++++.+.+.               .+.++                      
T Consensus       178 ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            8988887766655432 345678999999988876431               12233                      


Q ss_pred             -eCCCc---eeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECC
Q psy4393         181 -DTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSK  226 (247)
Q Consensus       181 -d~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~  226 (247)
                       |.+..   ..++.+....  .-..+.++|||+++++++ .+.++.|+|.+
T Consensus       257 VD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             ecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence             33221   0111111111  124578999999998876 68999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=0.002  Score=46.91  Aligned_cols=207  Identities=9%  Similarity=-0.015  Sum_probs=128.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECCCce
Q psy4393          25 GHTKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGK  102 (247)
Q Consensus        25 ~h~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~  102 (247)
                      .+.+.+.+++|++..+.|+-+ ..++.|+..+.........+......+..+++..-+..|. +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344567889999887777654 4557788777765555444544445678888877566554 55567799999987654


Q ss_pred             EEEEEecCCccEEEEEEcCCCCEEEEeeCC-CC--EEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEE
Q psy4393         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-ES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCR  178 (247)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  178 (247)
                      ....+.........++++|...+++..... +.  |.-.++............-.....+++++.+..|+.+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            333333334567788999977777654322 23  4444554332222222233456789998877767555 4567899


Q ss_pred             EEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEEEc
Q psy4393         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  235 (247)
                      ..|+...... .+......| ..+++.  +.+|+-.. ..+.|...|..+++...++.
T Consensus       193 ~~~~~g~~~~-~v~~~~~~P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         193 CLNPAQPGRR-KVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEETTEEEEE-EEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCeE-EEECCCCCc-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            9998765432 333322233 456665  45666555 56899999998877665543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.0092  Score=43.30  Aligned_cols=168  Identities=5%  Similarity=-0.045  Sum_probs=106.7

Q ss_pred             ccCCeEEEEECCCCCEEEEE-cCCCeEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEE-EeeCCCCEEEEECCCCeE
Q psy4393          68 HKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKC  145 (247)
Q Consensus        68 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~  145 (247)
                      +...+..++|.+..+.+.-+ ...+.|...++..+.....+.........++++..+..++ +-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            33447778998877766654 4567888888876554444444445677888887666555 445567899999875543


Q ss_pred             EEeecCCCCCeEEEEECCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEE
Q psy4393         146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLK  221 (247)
Q Consensus       146 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  221 (247)
                      ...+.........++++|...+++.....   ..|.-.++..... ..+..........+++++.++.|+-+. ..+.|.
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            22233333567889999977776654322   2344445554332 223323333447899998888887665 568999


Q ss_pred             EEECCCcceEEEEcc
Q psy4393         222 LWDSKVVTPAIICST  236 (247)
Q Consensus       222 vwd~~~~~~~~~~~~  236 (247)
                      ..|.+......++..
T Consensus       193 ~~~~~g~~~~~v~~~  207 (263)
T d1npea_         193 CLNPAQPGRRKVLEG  207 (263)
T ss_dssp             EEETTEEEEEEEEEC
T ss_pred             EEECCCCCeEEEECC
Confidence            999987766555444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.34  E-value=0.027  Score=45.67  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=110.2

Q ss_pred             CCeEEEEecCCCeEEEEEeccc-------------------------------------CCe-EEEEECCCCCEEEEEcC
Q psy4393          48 DKLIKIWGAYDGKFEKTISGHK-------------------------------------LGI-SDVAWSSDSRLLVSGSD   89 (247)
Q Consensus        48 dg~v~iw~~~~~~~~~~~~~~~-------------------------------------~~v-~~~~~~~~~~~l~~~~~   89 (247)
                      .|.|+-+|..+++.+.......                                     ..+ ...+..+....+..+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999888754211                                     011 12344555555554433


Q ss_pred             ----------------CCeEEEEECCCceEEEEEecCCccE---------EEEEEcCCCC---EEEEeeCCCCEEEEECC
Q psy4393          90 ----------------DKTLKIWELSSGKCLKTLKGHSNYV---------FCCNFNPQSN---LIVSGSFDESVRIWDVR  141 (247)
Q Consensus        90 ----------------d~~i~v~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~v~d~~  141 (247)
                                      ...+.-.|.++++....++.....+         .......+++   .++.++.+|.+.++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            2356678999998877666432111         1112222332   45677889999999999


Q ss_pred             CCeEEEeecCCCC---------------------------------------CeEEEEECCCCCEEEEecCC--------
Q psy4393         142 TGKCLKTLPAHSD---------------------------------------PVSAVHFNRDGSLIVSSSYD--------  174 (247)
Q Consensus       142 ~~~~~~~~~~~~~---------------------------------------~i~~~~~~~~~~~l~~~~~d--------  174 (247)
                      +++.+...+....                                       .-...+++|+...+++...+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            9887643211100                                       00124566666655543322        


Q ss_pred             -----------------------------CeEEEEeCCCceeeeeeccCC---CCCeEEEEECCCCCEEEEEEcCCeEEE
Q psy4393         175 -----------------------------GLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNTLKL  222 (247)
Q Consensus       175 -----------------------------g~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~v  222 (247)
                                                   |.+..+|+.+++.+=......   ..++     .-.+.++++++.||.++-
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l-----~TagglVf~G~~dg~l~A  489 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTL-----YTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEE
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCccee-----EecCCEEEEECCCCeEEE
Confidence                                         356677777776542221111   1111     123567888999999999


Q ss_pred             EECCCcceEEEEccCCc
Q psy4393         223 WDSKVVTPAIICSTPLN  239 (247)
Q Consensus       223 wd~~~~~~~~~~~~~~~  239 (247)
                      +|.++++.+=.+..+..
T Consensus       490 ~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         490 LDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EETTTCCEEEEEECSSC
T ss_pred             EECCCCcEEEEEECCCC
Confidence            99999998877766654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.013  Score=47.38  Aligned_cols=79  Identities=16%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             CCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC---CCCeEEEEECCCCC
Q psy4393         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGK  209 (247)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~  209 (247)
                      |.+.-+|+.+++.+....... +...-.+.-.+.++++|+.||.++.+|..+++.+=.+....   ..+   +.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P---~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP---MTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            457888999998876654321 11111122245677889999999999999999875543322   233   34455675


Q ss_pred             -EEEEEE
Q psy4393         210 -YILAAT  215 (247)
Q Consensus       210 -~l~~~~  215 (247)
                       ||+..+
T Consensus       514 qyv~v~a  520 (560)
T d1kv9a2         514 QYVAIMA  520 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.018  Score=41.81  Aligned_cols=206  Identities=7%  Similarity=-0.029  Sum_probs=121.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCC----eEEEEEecccCCeEEEEECCCCCEEE-EEcCCCeEEEEECC
Q psy4393          26 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELS   99 (247)
Q Consensus        26 h~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~   99 (247)
                      ....+.++.|++..+.|+-.. .++.|.-.++...    .....+......+..+++.+.+..|. +-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445677899998877776554 4455655544321    11222333334467788877555554 44566789999988


Q ss_pred             CceEEEEEecCCccEEEEEEcCCCCEEEEee--CCCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCe
Q psy4393         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL  176 (247)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  176 (247)
                      .......+.........++++|...+++...  ..+.|.-.++............-.....+++++.+..|+.+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            6655444555555677888988666665443  33456666665433322223333456889999877766655 55678


Q ss_pred             EEEEeCCCceeeeeeccCC-CCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCcceEEE
Q psy4393         177 CRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~  233 (247)
                      |...|+............. ......+++.  +.+|+-+. .++.|...+..++.....
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            9888886543322222211 1223446655  34565554 668888888777654433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.24  E-value=0.026  Score=43.58  Aligned_cols=193  Identities=11%  Similarity=0.150  Sum_probs=115.3

Q ss_pred             EEEECC---CCCEEEEEe-CCCeEEEEecCCCeEEEEEecc-cCCeEEEEEC--CCCCEEEEEcCCC-------------
Q psy4393          32 SVKFSP---NGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-KLGISDVAWS--SDSRLLVSGSDDK-------------   91 (247)
Q Consensus        32 ~~~~s~---~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d~-------------   91 (247)
                      .+.+..   ||++|+... .+..|.+-|+.+.+..+.+... ...+..+...  |...+++.++...             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   889887654 6789999999988877665432 3346666664  4556677666532             


Q ss_pred             -----eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCC---------------CEEEEE------------
Q psy4393          92 -----TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---------------SVRIWD------------  139 (247)
Q Consensus        92 -----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~v~d------------  139 (247)
                           .+.+.|..+.+....+.... ....+.++++|+++++.+.+.               .+.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 35677888877665554332 344678999999888765331               133333            


Q ss_pred             -----------CCCC---eEEEeecCCCCCeEEEEECCCCCEEEEec-CCCeEEEEeCCCceee--------eee--ccC
Q psy4393         140 -----------VRTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCL--------KTL--IDD  194 (247)
Q Consensus       140 -----------~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~--------~~~--~~~  194 (247)
                                 .+..   ..++.+.... ....+..+|||+++++++ .+.++.|+|++.-...        ...  ...
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                       3211   0111121111 124578999999887655 5789999998642110        000  011


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCeEEEEECC
Q psy4393         195 DNPPVSFVKFSPNGKYILAATLDNTLKLWDSK  226 (247)
Q Consensus       195 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  226 (247)
                      ....-...+|+..|.-..+--.|..|.-|+..
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            11222456899888533444579999999973

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.95  E-value=0.032  Score=42.26  Aligned_cols=115  Identities=11%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCEEEEeeCCC-----------CEEEEECCCCeEE--Eee-cCCCCCeEEEEECCCCCEEEEecCC-CeEEE
Q psy4393         115 FCCNFNPQSNLIVSGSFDE-----------SVRIWDVRTGKCL--KTL-PAHSDPVSAVHFNRDGSLIVSSSYD-GLCRI  179 (247)
Q Consensus       115 ~~~~~~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~v  179 (247)
                      .......++++++.|+.+.           .+.+||..+++-.  ... ..+........+.+++.+++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344556777777776421           2668999876521  111 2222233456788999999988765 58999


Q ss_pred             EeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcC------CeEEEEECCCcc
Q psy4393         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDSKVVT  229 (247)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~  229 (247)
                      ||..+.+....-...........+..+||++++.++.+      +.+.+||..+.+
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            99988765432211112223456778899999988753      368999987654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.80  E-value=0.044  Score=44.32  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=47.4

Q ss_pred             CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC---CCCeEEEEECCCCC-
Q psy4393         134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGK-  209 (247)
Q Consensus       134 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~-  209 (247)
                      .+.-||+.+++.+...+... +...=..+-.+.++++|+.||.++.+|.++++.+-.+....   ..+++   |..+|+ 
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~t---y~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPST---YMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEE---EEECCEE
Confidence            47778888888776654321 11110122256678889999999999999999875554332   23443   445675 


Q ss_pred             EEEEE
Q psy4393         210 YILAA  214 (247)
Q Consensus       210 ~l~~~  214 (247)
                      |++..
T Consensus       534 Yv~v~  538 (573)
T d1kb0a2         534 YVSVA  538 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.053  Score=39.15  Aligned_cols=163  Identities=9%  Similarity=-0.056  Sum_probs=97.9

Q ss_pred             CCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEc--CCCeEEEEECCCceEE
Q psy4393          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCL  104 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~  104 (247)
                      ..+.++++.+.+..|+.+ ...+.|.+.+.........+.........++++|...++....  ..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            456678887766655544 4567899998876555555555555678899998666655443  3456776777554443


Q ss_pred             EEEecCCccEEEEEEcCCCCEEEEe-eCCCCEEEEECCCCeEEEee--cCCCCCeEEEEECCCCCEEEEecCCCeEEEEe
Q psy4393         105 KTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (247)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  181 (247)
                      ............+++++.+..|+-+ ...+.|...|+.........  .........+++.. +.++.+-..++.|...+
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEE
Confidence            3333333456788899877766655 45678888888654322222  22222345566652 33334444667787777


Q ss_pred             CCCceeeeee
Q psy4393         182 TASGQCLKTL  191 (247)
Q Consensus       182 ~~~~~~~~~~  191 (247)
                      ..+++....+
T Consensus       236 ~~~g~~~~~~  245 (266)
T d1ijqa1         236 RLTGSDVNLL  245 (266)
T ss_dssp             TTTCCCCEEE
T ss_pred             CCCCcceEEE
Confidence            7776544443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.079  Score=41.03  Aligned_cols=205  Identities=16%  Similarity=0.136  Sum_probs=107.7

Q ss_pred             CeEEEEECCCCCEEEEE-eCC----CeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCC-------------
Q psy4393          29 AVSSVKFSPNGEWLASS-SAD----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-------------   90 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~-~~d----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------   90 (247)
                      .+..+.++|++++++.+ +.+    ..++++|+.+++....... ......+.|.+|++.|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34567889999988743 223    3689999999886543211 1123467899999987654322             


Q ss_pred             ---CeEEEEECCCce--EEEEEecCC--ccEEEEEEcCCCCEEEEeeC---CCC--EEEEECCCCeE--------EEeec
Q psy4393          91 ---KTLKIWELSSGK--CLKTLKGHS--NYVFCCNFNPQSNLIVSGSF---DES--VRIWDVRTGKC--------LKTLP  150 (247)
Q Consensus        91 ---~~i~v~d~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~---d~~--i~v~d~~~~~~--------~~~~~  150 (247)
                         ..+..+.+.+..  ....+....  ..+..+..++++++++....   ++.  +.+.|+.....        ...+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               257777776542  122333322  23556677889888764322   233  44445543211        11122


Q ss_pred             CCCCCeEEEEECCCCCEEEEec---CCCeEEEEeCCCcee--eeeeccCCCCCeEEEEECCCCCEEEEEE-cCC--eEEE
Q psy4393         151 AHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAAT-LDN--TLKL  222 (247)
Q Consensus       151 ~~~~~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~v  222 (247)
                      .......-+. +.++.+++...   .++.+...++.....  ...+.......+..-.+...+.+|+..- .++  +|++
T Consensus       285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            2222222222 22233333332   235666666665322  2333333333343333444445666554 454  6899


Q ss_pred             EECCCcceEEEEc
Q psy4393         223 WDSKVVTPAIICS  235 (247)
Q Consensus       223 wd~~~~~~~~~~~  235 (247)
                      ++...+....+..
T Consensus       364 ~~~~~~~~~~~~~  376 (430)
T d1qfma1         364 HDLATGALLKIFP  376 (430)
T ss_dssp             EETTTCCEEEEEC
T ss_pred             EECCCCcEEEecC
Confidence            9988776554433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.60  E-value=0.13  Score=41.55  Aligned_cols=195  Identities=12%  Similarity=0.049  Sum_probs=110.5

Q ss_pred             CCCEEEEEeCCCeEEEEecC-CCeEEEEEecccC----Ce-------EEEEECCCCCEEEEEcCCCeEEEEECCCceEEE
Q psy4393          38 NGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL----GI-------SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~----~v-------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  105 (247)
                      +|...++.+.++.|.-.|.. +++.+.++.....    ..       ..+++.  +..++.++.++.+.-.|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            34433333336778888864 6888877642110    00       112222  3467778889999999999998766


Q ss_pred             EEecCCccE-EEEEEcC--CCCEEEEee------CCCCEEEEECCCCeEEEeecCCC-----------------------
Q psy4393         106 TLKGHSNYV-FCCNFNP--QSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHS-----------------------  153 (247)
Q Consensus       106 ~~~~~~~~v-~~~~~~~--~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~-----------------------  153 (247)
                      ......... ..+...|  .+..++.+.      ..|.|+-+|+++|+.+..+....                       
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  219 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             cccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence            553211100 0000011  123344443      26789999999999877643211                       


Q ss_pred             --------------C-CeEEEEECCCCCEEEEecC----------------CCeEEEEeCCCceeeeeeccCCC------
Q psy4393         154 --------------D-PVSAVHFNRDGSLIVSSSY----------------DGLCRIWDTASGQCLKTLIDDDN------  196 (247)
Q Consensus       154 --------------~-~i~~~~~~~~~~~l~~~~~----------------dg~i~v~d~~~~~~~~~~~~~~~------  196 (247)
                                    . ......+++....++.+..                ...+...|.++++..-.+...+.      
T Consensus       220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D  299 (571)
T d2ad6a1         220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA  299 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred             cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence                          0 1123456666666655443                24577789999886644432211      


Q ss_pred             --CCeEEEEECCCCC---EEEEEEcCCeEEEEECCCcceEEEE
Q psy4393         197 --PPVSFVKFSPNGK---YILAATLDNTLKLWDSKVVTPAIIC  234 (247)
Q Consensus       197 --~~v~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~  234 (247)
                        .+........+++   .++.++.+|.+.++|.++++++...
T Consensus       300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccceeeeeccCccccceeeccccceEEEEecCCCcEeeee
Confidence              1112222333443   5667888999999999999987653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.54  E-value=0.15  Score=41.42  Aligned_cols=63  Identities=19%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                      |.+..||+.+++.+=......  +...-.++-.+.+++.|+.||.++-+|.++++.+=.+..+..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~--~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~  515 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ceEEEEeCCCCceecccCCCC--CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence            457777777776542221111  110001123467788899999999999999998888777654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.51  E-value=0.14  Score=41.10  Aligned_cols=146  Identities=10%  Similarity=0.082  Sum_probs=86.8

Q ss_pred             eEEEEECCCceEEEEEecCCccE---------EEEEEcCCC---CEEEEeeCCCCEEEEECCCCeEEEeecCCCC-----
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYV---------FCCNFNPQS---NLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----  154 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----  154 (247)
                      .|.-.|.++++....++.....+         .-.....++   ..++.+..+|.+.++|..+++.+...+....     
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            46667888888766554322111         111222233   3566788999999999999987654321100     


Q ss_pred             -------------------------------CeEEEEECCCCCEEEEecC------------------------------
Q psy4393         155 -------------------------------PVSAVHFNRDGSLIVSSSY------------------------------  173 (247)
Q Consensus       155 -------------------------------~i~~~~~~~~~~~l~~~~~------------------------------  173 (247)
                                                     .....+++|+...+++...                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                                           0113456666665554321                              


Q ss_pred             ------CCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEEEccCCc
Q psy4393         174 ------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAIICSTPLN  239 (247)
Q Consensus       174 ------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  239 (247)
                            .|.+..+|+.+++.+=......  +...-.+.-.+.++++|+.||.++-+|.++++.+=.+..+..
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~  500 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCC--CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence                  2467788888887553332211  111111223466788899999999999999998878777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.44  E-value=0.11  Score=39.03  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=95.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-----C------eEEEEecCCCeEEEE--E-ecccCCeEEEEECCCCCEEEEEcCC-Ce
Q psy4393          28 KAVSSVKFSPNGEWLASSSAD-----K------LIKIWGAYDGKFEKT--I-SGHKLGISDVAWSSDSRLLVSGSDD-KT   92 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~d-----g------~v~iw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~   92 (247)
                      .++.......+|+.++.|+.+     +      .+.+||..++.....  . ..+..-....++.+++..++.++.+ ..
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            344455566788888777642     1      367899887654321  1 2222334566788999998888655 58


Q ss_pred             EEEEECCCceEEEEEecCC-ccEEEEEEcCCCCEEEEeeCC------CCEEEEECCCCeEEEeecC----------CC--
Q psy4393          93 LKIWELSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKTLPA----------HS--  153 (247)
Q Consensus        93 i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~----------~~--  153 (247)
                      +.+||..+......-.... ..-..+...+++.+++.|+..      ..+.+||..+.+-.. +..          +.  
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~  178 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGL  178 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGG
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccce
Confidence            9999998765432111111 112345667889999988753      358899988765211 110          00  


Q ss_pred             ---CCeEEEEECCCCCEEEEecCCCeEEEEeCCCcee
Q psy4393         154 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (247)
Q Consensus       154 ---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (247)
                         ..-..+..-++++.+..+...+.+.++|..+...
T Consensus       179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence               0001123345677777777777788888776653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.40  E-value=0.052  Score=44.02  Aligned_cols=82  Identities=22%  Similarity=0.320  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCCCeEEEEECCCCC-E
Q psy4393         132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-Y  210 (247)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~  210 (247)
                      .|.+.-+|+.+++.+.....+. ++..-..+-.+.++++|+.||.++.+|.++|+.+=.+.......-.-+.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678899999998877665332 2211112235667788999999999999999988655433221111144566775 5


Q ss_pred             EEEE
Q psy4393         211 ILAA  214 (247)
Q Consensus       211 l~~~  214 (247)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.18  E-value=0.066  Score=43.28  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             eEEEEECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCe-EEEEECCCCCE
Q psy4393          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRDGSL  167 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~  167 (247)
                      .+.-||+.+++.+-..+.... ...-...-.+.++++|+.|+.++.+|.++|+.+.++....... .-|.|..+|+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCCC-CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            466677777776655543221 1111122356788889999999999999999998876543211 12444557763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.08  E-value=0.26  Score=39.82  Aligned_cols=198  Identities=12%  Similarity=0.063  Sum_probs=114.2

Q ss_pred             CCCEEEEEeCCCeEEEEec-CCCeEEEEEecccC-----------CeEEEEECCC----CCEEEEEcCCCeEEEEECCCc
Q psy4393          38 NGEWLASSSADKLIKIWGA-YDGKFEKTISGHKL-----------GISDVAWSSD----SRLLVSGSDDKTLKIWELSSG  101 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~-----------~v~~~~~~~~----~~~l~~~~~d~~i~v~d~~~~  101 (247)
                      +|.+.++.+.++.+...|. .+++.+..+.....           ..+.+++.++    ..+++.++.|+.+.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3443344444566766675 46777776542110           0123344332    346888889999999999999


Q ss_pred             eEEEEEecCCccE-EEEEEcC--CCCEEEEeeC------CCCEEEEECCCCeEEEeecCCC-------------------
Q psy4393         102 KCLKTLKGHSNYV-FCCNFNP--QSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHS-------------------  153 (247)
Q Consensus       102 ~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~-------------------  153 (247)
                      +.+..+....... ..+.-.|  .+..++.+..      .|.|+-+|+++|+.+..+....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            9887664321100 0000111  1345555543      4789999999999887653210                   


Q ss_pred             -------------------CCeEEEEECCCCCEEEEecC----------------CCeEEEEeCCCceeeeeeccCCC--
Q psy4393         154 -------------------DPVSAVHFNRDGSLIVSSSY----------------DGLCRIWDTASGQCLKTLIDDDN--  196 (247)
Q Consensus       154 -------------------~~i~~~~~~~~~~~l~~~~~----------------dg~i~v~d~~~~~~~~~~~~~~~--  196 (247)
                                         .....+.+++...+++.+..                ...+...|+++++..=.+...+.  
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                               01223456666666655532                23577789999886544432211  


Q ss_pred             ------CCeEEEE-ECCCC---CEEEEEEcCCeEEEEECCCcceEEEEc
Q psy4393         197 ------PPVSFVK-FSPNG---KYILAATLDNTLKLWDSKVVTPAIICS  235 (247)
Q Consensus       197 ------~~v~~~~-~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~  235 (247)
                            .....+. ...+|   +.++..+.+|.+.++|.++++++....
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence                  1122222 23444   367778889999999999998876543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.55  E-value=0.27  Score=35.89  Aligned_cols=150  Identities=11%  Similarity=0.224  Sum_probs=92.0

Q ss_pred             CCeEEEEECCCCCEEEEEe---C----CCeEEEEecCCCeEEEEEecccCCeEEEEECC--C-CCEEEEE---cCCCeEE
Q psy4393          28 KAVSSVKFSPNGEWLASSS---A----DKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--D-SRLLVSG---SDDKTLK   94 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~---~----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~---~~d~~i~   94 (247)
                      ..|..-.-+++.++++..+   .    .|.+++|..+.. ..+.+.+|-.....+...-  . .+.++.+   ...+.++
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLh  226 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  226 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEE
Confidence            5688888899999876432   2    367788987654 4456666654443333321  1 1223322   2236788


Q ss_pred             EEECCCceE------EE--EEe----cCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeecCCCCCeEEEEEC
Q psy4393          95 IWELSSGKC------LK--TLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (247)
Q Consensus        95 v~d~~~~~~------~~--~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  162 (247)
                      +-++.....      .+  .+.    ...+.-.++..++....++.-+.-|.+++||+.++.++..-+....+|...+-+
T Consensus       227 IiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~  306 (327)
T d1utca2         227 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  306 (327)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             EEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccC
Confidence            888754210      01  111    112334467888888899999999999999999999988877666676655544


Q ss_pred             CCCCEEEEecCCCeEE
Q psy4393         163 RDGSLIVSSSYDGLCR  178 (247)
Q Consensus       163 ~~~~~l~~~~~dg~i~  178 (247)
                      .+..-+++...+|++.
T Consensus       307 ~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         307 EATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTTEEEEEETTSEEE
T ss_pred             CCCceEEEECCCCeEE
Confidence            4444444444566543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.40  E-value=0.35  Score=36.23  Aligned_cols=194  Identities=10%  Similarity=0.212  Sum_probs=107.7

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEEC------CCCCEEEEEcC--C--CeEEEEECCC-ceEEE
Q psy4393          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS------SDSRLLVSGSD--D--KTLKIWELSS-GKCLK  105 (247)
Q Consensus        37 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--~~i~v~d~~~-~~~~~  105 (247)
                      |+..+++...+++-|.+||+. |+.+..+.  .+++..+...      -...-+++++.  +  ..|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999984 66555543  2344444432      12223444442  2  3577777642 22233


Q ss_pred             EEecC-------CccEEEEEE--cCC-CC-EEEEeeCCCCEEEEECC---CC----eEEEeecCCCCCeEEEEECCCCCE
Q psy4393         106 TLKGH-------SNYVFCCNF--NPQ-SN-LIVSGSFDESVRIWDVR---TG----KCLKTLPAHSDPVSAVHFNRDGSL  167 (247)
Q Consensus       106 ~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~  167 (247)
                      .+...       ...+..+|+  ++. +. +++....+|.+..|.+.   .+    +.++.+.. ...+..+.+++....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence            22211       123445555  554 44 34556678888877663   22    23445554 346778889988888


Q ss_pred             EEEecCCCeEEEEeCCCc-----eeeeeecc-CCCCCeEEEEE--CCCCC-EEEEEE-cCCeEEEEECCCc-ceEEEE
Q psy4393         168 IVSSSYDGLCRIWDTASG-----QCLKTLID-DDNPPVSFVKF--SPNGK-YILAAT-LDNTLKLWDSKVV-TPAIIC  234 (247)
Q Consensus       168 l~~~~~dg~i~v~d~~~~-----~~~~~~~~-~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~~~~-~~~~~~  234 (247)
                      |+.+-++.-+..+++...     ..+..... .-..-+..|+.  .++++ ||++++ .+++..|||.+.. ..+..+
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            988888877777765421     11111111 12334555553  33433 666665 4689999998774 444343

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.30  E-value=0.33  Score=35.40  Aligned_cols=196  Identities=13%  Similarity=0.190  Sum_probs=121.5

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCc-eEEEEEecC
Q psy4393          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLKTLKGH  110 (247)
Q Consensus        32 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~  110 (247)
                      +...+|..+.||.-+ ...++++|+++........-. .+|.-=.|-.+. .|+..+ +..|+-|+++.. .+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            456788888777644 568999999988777666543 356555676544 344333 457899999542 355555544


Q ss_pred             C----ccEEEEEEcCCCCEEEEee---C----CCCEEEEECCCCeEEEeecCCCCCeEEEEECCCC---CEEEEe---cC
Q psy4393         111 S----NYVFCCNFNPQSNLIVSGS---F----DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSS---SY  173 (247)
Q Consensus       111 ~----~~v~~~~~~~~~~~l~~~~---~----d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~---~~  173 (247)
                      .    ..|.....+++.++++..+   .    .|.+.+|..+.+. .+.+.+|......+.+..+.   .+++.+   ..
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            3    3566677788888876543   2    3567888876543 34556665443333332111   122222   23


Q ss_pred             CCeEEEEeCCCce---e------eeeeccC---CCCCeEEEEECCCCCEEEEEEcCCeEEEEECCCcceEEE
Q psy4393         174 DGLCRIWDTASGQ---C------LKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSKVVTPAII  233 (247)
Q Consensus       174 dg~i~v~d~~~~~---~------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  233 (247)
                      .+.+++.++....   .      ...++.+   ...|| .+..++....++.-+.-|.|++||..+++++..
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv-amqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE-EEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence            3678888876521   1      1111111   22344 477888888999999999999999999887654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.79  E-value=0.26  Score=37.96  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             EEEEEEcCCCCEEEEee-CCC----CEEEEECCCCeEEEeecCCCCCeEEEEECCCCCEEEEecCC--------------
Q psy4393         114 VFCCNFNPQSNLIVSGS-FDE----SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--------------  174 (247)
Q Consensus       114 v~~~~~~~~~~~l~~~~-~d~----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------  174 (247)
                      +...+++|++++++.+- .+|    .++++|+.+++.+...-. ......+.|.+|++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            34567899999988642 233    599999999986542211 1112357899999877543322              


Q ss_pred             --CeEEEEeCCCceeeeeec-c-CC-CCCeEEEEECCCCCEEEEEE
Q psy4393         175 --GLCRIWDTASGQCLKTLI-D-DD-NPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~-~-~~-~~~v~~~~~s~~~~~l~~~~  215 (247)
                        ..+..+.+.+......+. . .. ..-+..+..++++++++...
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence              257777777654322221 2 22 22355677899999987543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.73  E-value=0.56  Score=35.06  Aligned_cols=143  Identities=13%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             CCCCEEEEEcCCCeEEEEECCCceEEEEEecCCccEEEEE------EcCCCCEEEEeeC--CC--CEEEEECCC-CeEEE
Q psy4393          79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN------FNPQSNLIVSGSF--DE--SVRIWDVRT-GKCLK  147 (247)
Q Consensus        79 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~--d~--~i~v~d~~~-~~~~~  147 (247)
                      |+.++++...+.+-+.+||++ |+.+..+..  +.+.-+.      +......++.++.  ++  .|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888888789999985 666665542  3333333      2222333444442  22  466776642 22233


Q ss_pred             eecCCC-------CCeEEEEE--CCC-CC-EEEEecCCCeEEEEeC---CCce----eeeeeccCCCCCeEEEEECCCCC
Q psy4393         148 TLPAHS-------DPVSAVHF--NRD-GS-LIVSSSYDGLCRIWDT---ASGQ----CLKTLIDDDNPPVSFVKFSPNGK  209 (247)
Q Consensus       148 ~~~~~~-------~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~---~~~~----~~~~~~~~~~~~v~~~~~s~~~~  209 (247)
                      .+....       ..+..+|+  ++. +. ++++...+|.+..|.+   ..+.    .++.+  .....+..|.+++..+
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~  192 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDEYG  192 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCCCC
Confidence            332211       12444554  664 44 4556677888877755   2232    22233  2345678899999999


Q ss_pred             EEEEEEcCCeEEEEECC
Q psy4393         210 YILAATLDNTLKLWDSK  226 (247)
Q Consensus       210 ~l~~~~~dg~i~vwd~~  226 (247)
                      .|+.+-++..|..++..
T Consensus       193 ~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEEETTTEEEEEESS
T ss_pred             cEEEecCccceEEEEec
Confidence            99999988877777654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.79  Score=34.63  Aligned_cols=137  Identities=12%  Similarity=0.026  Sum_probs=77.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe
Q psy4393          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (247)
Q Consensus        29 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  108 (247)
                      .|..++|+-+  .|+.. .++.+..++...-...........++..+.+.|.  .++....++.+.++++.+++......
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            6888999744  45543 4566777776654333343334566888888875  45556678889999998775432211


Q ss_pred             c-----CCccEEEEEEcCCCCEEEEeeCCCCEEEE-ECCCCeEEEeecCCCCCeEEEEECCCCCEEEEe
Q psy4393         109 G-----HSNYVFCCNFNPQSNLIVSGSFDESVRIW-DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus       109 ~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      +     -.+.+.+++|++.+..++++..+. ..+- ++.....+..-......+.++.|-.+..++++-
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            1     124467778888877777764322 1111 111111010001123457788888766665543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.73  Score=32.66  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=50.8

Q ss_pred             CCEEEEeeCC-----CCEEEEECCCCeEEEeecCCCC--CeEEEEECCCCCEEEEecCCC-----eEEEEeCCCceeeee
Q psy4393         123 SNLIVSGSFD-----ESVRIWDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKT  190 (247)
Q Consensus       123 ~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~  190 (247)
                      ..+++.|+.+     ..+..||....+.... .....  ...++.. .++.+++.|+.++     ....+|..+.+....
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ecceEecCcccccccceEEEeeccccccccc-cccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            4555566543     3478888876653221 11111  1112222 2355666665443     467778776654322


Q ss_pred             eccCCCCCe-EEEEECCCCCEEEEEEcCC-----eEEEEECCCcc
Q psy4393         191 LIDDDNPPV-SFVKFSPNGKYILAATLDN-----TLKLWDSKVVT  229 (247)
Q Consensus       191 ~~~~~~~~v-~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~  229 (247)
                      - ....... ..++ ..++++++.|+.++     .+.+||....+
T Consensus       227 ~-~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         227 A-PMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             C-CCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             c-CccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            1 1111111 1122 23577888876543     47889987653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.44  E-value=1  Score=33.35  Aligned_cols=154  Identities=11%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             CeEEEEECCCCCEEEEEcC------------CCeEEEEECCCceE-EEE--EecCC-----ccEEEEEE--cCCCCE-EE
Q psy4393          71 GISDVAWSSDSRLLVSGSD------------DKTLKIWELSSGKC-LKT--LKGHS-----NYVFCCNF--NPQSNL-IV  127 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~-~~~--~~~~~-----~~v~~~~~--~~~~~~-l~  127 (247)
                      +..++...|+|..+++++.            .|.+.++|+++... ...  +.+..     ..-..+..  .+++.. |+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456777777766665532            48899999876432 111  12111     11233333  345543 33


Q ss_pred             Ee---eCCCCEEEEECCCCe-EE---EeecC-CCCCeEEEEECCCCCEEEEec--C---------------CCeEEEEeC
Q psy4393         128 SG---SFDESVRIWDVRTGK-CL---KTLPA-HSDPVSAVHFNRDGSLIVSSS--Y---------------DGLCRIWDT  182 (247)
Q Consensus       128 ~~---~~d~~i~v~d~~~~~-~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~--~---------------dg~i~v~d~  182 (247)
                      ..   ....+|.+|++.... .+   ..+.. .......+....++.+++|-.  .               .+.+..||.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            33   234567788775332 11   12221 123467888888888877731  1               123444444


Q ss_pred             CCceeeeeeccCCCCCeEEEEECCCCCEEEEEE-cCCeEEEEECCCc
Q psy4393         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSKVV  228 (247)
Q Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  228 (247)
                      ...+..   . ..-..-+.++++||+++|+.+. ..++|++|+.+..
T Consensus       196 ~~~~~~---~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         196 NDVRVV---A-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SCEEEE---E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CceEEE---c-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            332221   1 1122357899999999887765 5689999988644

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=1.2  Score=33.54  Aligned_cols=177  Identities=11%  Similarity=0.035  Sum_probs=96.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEecC-----------CCeEEEEEecccCCeEEEEECCCCCEEEEEcCCCeEEEE
Q psy4393          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (247)
Q Consensus        28 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~   96 (247)
                      ....-++.++...++++|+.++ +.|-...           .........  -..|..++|+.+  .++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            3455677877777788777765 5565421           111111221  235888888644  44444 34567777


Q ss_pred             ECCCceEEEEEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCCCeEEEeec-----CCCCCeEEEEECCCCCEEEEe
Q psy4393          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSS  171 (247)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~  171 (247)
                      +...-............+..+.++|.  .++....++.+-++++..+.......     .-.+.+.+++|++.|..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            77654333333334455777777774  56666778889999998775322111     112457778888888877776


Q ss_pred             cCCCeEEEE-eCCCceeeeeeccCCCCCeEEEEECCCCCEEEEE
Q psy4393         172 SYDGLCRIW-DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (247)
Q Consensus       172 ~~dg~i~v~-d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  214 (247)
                      ..++ ..+- ++.....+.. .......+..+.|-.+..++++-
T Consensus       189 ~g~~-~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         189 RNGE-MEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ETTE-EEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCCc-eeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEE
Confidence            3221 1111 1111100000 01123456778887776666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.40  E-value=1.5  Score=32.45  Aligned_cols=184  Identities=13%  Similarity=0.156  Sum_probs=97.6

Q ss_pred             eEEEEECCCCCEEEEEeC------------CCeEEEEecCCCeEE-E--EEecc-----cCCeEEEEE--CCCCCE-EEE
Q psy4393          30 VSSVKFSPNGEWLASSSA------------DKLIKIWGAYDGKFE-K--TISGH-----KLGISDVAW--SSDSRL-LVS   86 (247)
Q Consensus        30 v~~~~~s~~~~~l~~~~~------------dg~v~iw~~~~~~~~-~--~~~~~-----~~~v~~~~~--~~~~~~-l~~   86 (247)
                      --.++..|+|..+++++.            .|.+.++|..+.... .  .+.+.     ......+..  .++|.. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346788899987766542            488999997654321 1  12211     122344443  455653 433


Q ss_pred             E---cCCCeEEEEECCCce-EE---EEEecC-CccEEEEEEcCCCCEEEEee--C-------------CCCEEEEECCCC
Q psy4393          87 G---SDDKTLKIWELSSGK-CL---KTLKGH-SNYVFCCNFNPQSNLIVSGS--F-------------DESVRIWDVRTG  143 (247)
Q Consensus        87 ~---~~d~~i~v~d~~~~~-~~---~~~~~~-~~~v~~~~~~~~~~~l~~~~--~-------------d~~i~v~d~~~~  143 (247)
                      .   .....|.++++.... .+   ..+... ......+.+..++.+++|-.  .             -+.-.+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            3   235578888875432 11   222211 23356777777888777721  1             122344444333


Q ss_pred             eEEEeecCCCCCeEEEEECCCCCEEEEe-cCCCeEEEEeCCCceeeee-eccCCCCCeEEEEECCC-CCEEEEE
Q psy4393         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFSPN-GKYILAA  214 (247)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~  214 (247)
                      .. ......-...+.++++||+++|+++ +..+.|++|++.....+.. ....-....-.+.++++ |.+.+++
T Consensus       197 ~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            32 2221222356889999999877655 5677899998865432211 11112233456778764 4444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.01  E-value=2  Score=33.09  Aligned_cols=54  Identities=13%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             cCCeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEe--------cCCccEEEEEEcCC
Q psy4393          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--------GHSNYVFCCNFNPQ  122 (247)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~  122 (247)
                      -....+|+|.|+++++++.-..|.|++++..++.......        ........++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3457799999999988877567999999877765432221        11234678899884

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.86  E-value=2.1  Score=32.97  Aligned_cols=64  Identities=14%  Similarity=0.218  Sum_probs=42.7

Q ss_pred             CceEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCeEEEEEe--------cccCCeEEEEECCC
Q psy4393          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSD   80 (247)
Q Consensus        16 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------~~~~~v~~~~~~~~   80 (247)
                      ++..+. +...-..-.+++|.|+|+++++--..|.|++++..++.......        ....+...++++|+
T Consensus        16 ~f~~~~-ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          16 NFDKKV-ILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             TSCEEE-EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CcEEEE-EECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            344433 33334567799999999988876457999999877665443221        12346788999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.75  E-value=1.7  Score=29.93  Aligned_cols=146  Identities=12%  Similarity=0.175  Sum_probs=76.4

Q ss_pred             CeEEEEECCCCCEEEEEcCCCeEEEEECCCceEEEEEec-CCccEEEEEEcCCCCEEEEe----eCCCCEEEEECCCCeE
Q psy4393          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSG----SFDESVRIWDVRTGKC  145 (247)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~----~~d~~i~v~d~~~~~~  145 (247)
                      +|.+++.. +.+..++|+......+|-++.|+..+...- .-+.|..+.    +.+++-.    +....+-+=|+.+|. 
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~SG~-  178 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSSGG-  178 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTTEE-
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEecccCC-
Confidence            45555543 344566777666777888877764332211 111222221    2222211    111112222443332 


Q ss_pred             EEeecCCCCCeEEEEECCCCCEEEEecC----CCeEEEEeCCCceeeeeeccC------CCCCeEEEEECCCCCEEEEEE
Q psy4393         146 LKTLPAHSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDD------DNPPVSFVKFSPNGKYILAAT  215 (247)
Q Consensus       146 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~  215 (247)
                      ++.+...++.++...+.+..+. +++.+    ...| -+|+++++....-+..      ....|..+-+.|++++++.+-
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence            3444445566666667776654 33322    1233 4588876543321111      233567788999999999999


Q ss_pred             cCCeEEEEE
Q psy4393         216 LDNTLKLWD  224 (247)
Q Consensus       216 ~dg~i~vwd  224 (247)
                      .||+-++|+
T Consensus       257 rdG~s~lF~  265 (313)
T d2hu7a1         257 REGRSAVFI  265 (313)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCchheee
Confidence            999999986

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.77  E-value=5.2  Score=27.81  Aligned_cols=92  Identities=15%  Similarity=0.218  Sum_probs=44.5

Q ss_pred             eEEEEECCCceEEEEEecCCc-cEEEEEEcCCCCEEEEeeCCC-----CEEEEECCCCeEEEeecC--CCCCeEEEEECC
Q psy4393          92 TLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLKTLPA--HSDPVSAVHFNR  163 (247)
Q Consensus        92 ~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~  163 (247)
                      .+..||..+.+....-..... ...+... ..+.+++.|+.++     ....+|..+.+....-..  ...... ++. .
T Consensus       165 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~-~  241 (288)
T d1zgka1         165 SAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITV-H  241 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-E
T ss_pred             eEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceE-EEE-E
Confidence            567788776543321111111 1111222 2345666665443     467778776553322111  111112 222 2


Q ss_pred             CCCEEEEecCCC-----eEEEEeCCCce
Q psy4393         164 DGSLIVSSSYDG-----LCRIWDTASGQ  186 (247)
Q Consensus       164 ~~~~l~~~~~dg-----~i~v~d~~~~~  186 (247)
                      ++++++.|+.++     .+.+||+.+.+
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            577778777654     47788888765

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.84  E-value=8.2  Score=28.02  Aligned_cols=144  Identities=13%  Similarity=0.073  Sum_probs=79.4

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCe-------EE-EEEecccCCeEEEEECCCCCEEEEEcCCCeEEEEECCCce-------
Q psy4393          38 NGEWLASSSADKLIKIWGAYDGK-------FE-KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-------  102 (247)
Q Consensus        38 ~~~~l~~~~~dg~v~iw~~~~~~-------~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-------  102 (247)
                      ...+|+..+..|.++......-.       .. ..+ .....+..+....+...++.++..|.+..++...-.       
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~  183 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA  183 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccceeccCCCeEEEEEEecceeeEeecccccccCcccc
Confidence            35677788899999988763211       11 112 233345566666666778888899988888864321       


Q ss_pred             EEE--EEecCCccEEEEEEcCCCCEEEEeeCCCCEEEEECCC-------CeEEEeec---CCCCCeEEEEECCCCCEEEE
Q psy4393         103 CLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-------GKCLKTLP---AHSDPVSAVHFNRDGSLIVS  170 (247)
Q Consensus       103 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~---~~~~~i~~~~~~~~~~~l~~  170 (247)
                      -++  .+......+......+++..+++.+..|..+...+..       ++-+..++   .....+..+....+...++.
T Consensus       184 GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l  263 (323)
T d1wp5a_         184 GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYL  263 (323)
T ss_dssp             CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEE
T ss_pred             cccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEE
Confidence            111  2222233343445556677888888888887765532       11122221   12234555544444445555


Q ss_pred             ecCCCeEEEEeC
Q psy4393         171 SSYDGLCRIWDT  182 (247)
Q Consensus       171 ~~~dg~i~v~d~  182 (247)
                      .+..|.+.-.++
T Consensus       264 ~T~~g~~~r~~~  275 (323)
T d1wp5a_         264 QTEKSFIETIKV  275 (323)
T ss_dssp             EETTSCEEEEEG
T ss_pred             EeCCCEEEEEEh
Confidence            556666544443